Citrus Sinensis ID: 004922
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYL7 | 852 | Pentatricopeptide repeat- | yes | no | 0.988 | 0.839 | 0.560 | 0.0 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.453 | 0.598 | 0.272 | 1e-28 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.532 | 0.446 | 0.234 | 2e-27 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.587 | 0.568 | 0.232 | 3e-27 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.589 | 0.520 | 0.220 | 3e-26 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.520 | 0.394 | 0.241 | 3e-26 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.547 | 0.401 | 0.239 | 5e-26 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.507 | 0.330 | 0.223 | 1e-25 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.524 | 0.534 | 0.224 | 2e-25 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.611 | 0.596 | 0.224 | 9e-25 |
| >sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/733 (56%), Positives = 526/733 (71%), Gaps = 18/733 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKV 722
NLAIDL+GLTK+
Sbjct: 721 GNLAIDLQGLTKI 733
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 21/349 (6%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F S T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LFREMSQRG-------LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 193/444 (43%), Gaps = 59/444 (13%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA 585
Y V L ++M + P+ ++ +I ACG G E A +IL+ M + + P A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA 459
Query: 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645
YT I+ ++ ++A F M P++ T+ +LL + +R G + E + L+
Sbjct: 460 YTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV 519
Query: 646 DMWKAGYKANDTYLKELIEEWCEG 669
D +G N IE + +G
Sbjct: 520 D---SGIPRNRDTFNAQIEAYKQG 540
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/478 (23%), Positives = 213/478 (44%), Gaps = 53/478 (11%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY--- 621
E ALQ+ M E G+ PDVV Y+ I + R ++A L ++ + + P+ VTY
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 622 ------------ITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667
++L++ G + E Q V++ M +K + T +I C
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQ---VFESMLGKNHKPDGTAYNIMIHGHC 651
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 213/458 (46%), Gaps = 32/458 (6%)
Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--L 309
+ P+++ T++ G + +I+E++R+ NI FN+ + + + KFT +
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
+++ + G+ D+ ++N LL + G + E+ G K ++ G + + T++T+
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLL---AVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTL 495
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ ++ A+ V ML AGVTP+ T+++++ A A G+ EQ+ + EM C
Sbjct: 496 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 555
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
+PN LL A + L E Y G + + + K
Sbjct: 556 KPNELTYCSLLHAYANGKEIGLMHSLAE------------EVYSGVIEPRAVL-LKTLVL 602
Query: 490 ITNTPNFVPNSH--YSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLS 545
+ + + +P + +S +R F P TT N ++ KA +++ M+ G +
Sbjct: 603 VCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
P+ ++ L+ S + + +IL+ + G+ PD+++Y T I R+ R++ A +
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
F EM++ I P+++TY T + + Y + ++ + V + M K G + N +++
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGS---YAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 666 WCEGVIQDKNQNQGEVTLCRRTNSQRPQS---LLLEKV 700
+C+ + K++ + V R + P+ LLE++
Sbjct: 779 YCK--LNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERI 814
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 182/405 (44%), Gaps = 29/405 (7%)
Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
I T++D + D K +++ L+ T + + L+N+ K + LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
++ GV ++ +Y++++ + A ++ ++ K +K DV Y+ I+ F
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
A++ ++M P T T+ +I+ A +G + +++ +F+ M + GC P
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
N L+ VE Q ++A + TL+ +S EH K Q +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
+ Y + + TY L+KACC AL EM + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
+ ILID G+V A +++ M+++G+ PD+ YT+ I C ++ + +A EEM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 792 ALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPD 833
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 193/484 (39%), Gaps = 88/484 (18%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM--------- 579
+ L++ M G PN I + LID G ++ A ++ M E G
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714
Query: 580 --------------------------SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613
+P+VV YT I + + +A+ L + M+
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774
Query: 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQD 673
QPN+VTY ++ +G + +++ CL + + M G N + LI+ C+ D
Sbjct: 775 CQPNVVTYTAMIDG---FGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831
Query: 674 KNQN 677
N
Sbjct: 832 VAHN 835
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 176/402 (43%), Gaps = 35/402 (8%)
Query: 277 AIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ +++ + + N+Y F + V A + E+ K M G D+ +Y +L+ A
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394
C A A+E++ ++K G K D TY T++ F+D + + +M G
Sbjct: 304 CTARKLDCAKEVFEKMK----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359
Query: 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454
P+ +T++ L++A AG +A + M G PN N L+ + + D A
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 455 LFRSW------TLSKTQVALGEDYDGNTDRISNMEHKDKQSITN-TPNFVP-NSHYSSFD 506
LF + + T + + Y + D +S +E +K PN V N+ S
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566
K + K + ++ +GL P+ +++ +++ G ++
Sbjct: 480 KAGRDR------------------EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDE 521
Query: 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626
A+++L M E+G PDV+ + I ++ R+ +A+ +F MK +++P +VTY TLL
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581
Query: 627 ARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668
+ G ++Q+ + +++ M + G N L + C+
Sbjct: 582 GLGKNG---KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 196/472 (41%), Gaps = 93/472 (19%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
L + + F K D AL+ ++ S +II G +++ A++E+L
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
R + +N+L+ V LK + M+K GV D +Y++L+ A AG
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P+
Sbjct: 391 ESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
++ +I+ ++ AM F+ ML G EP+ N L+ C+ R
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC---HCKHGR--------- 494
Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
+ V + + ++R P TTYNI
Sbjct: 495 ----------------------------------HIVAEEMFEAMERRGCL-PCATTYNI 519
Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL------- 571
++ + + +K L+ +M++ G+ PN ++ T L+D G SG A++ L
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 572 ----------------------------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++M DG+ P ++A + I +R +AF
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAF 639
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655
++ + MK ++P++VTY TL++A R + + Q+ VY++M +G K +
Sbjct: 640 AVLQYMKENGVKPDVVTYTTLMKALIR---VDKFQKVPVVYEEMIMSGCKPD 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 109/485 (22%), Positives = 203/485 (41%), Gaps = 43/485 (8%)
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
EF V +C N N+ I + C + R I + V + +
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+L + + K+ PN YI +II + C IC A E +R Q + + V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354
Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+L++ D++ + + M + D+ +Y ++ C G+ V A +++ E
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ KG L+ D T++ ++ + A + A +V M+ AG +PN +T+++LI+ G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
++ A L EM + G +PN N ++ ++ + A +L V E
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
N D ++ D + + K +PT T+N+LM C
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
+ L+N M G++PN ++ L+ N++ A I K M G+ PD Y +
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 638
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650
K +++ +K+A+ LF+EMK ++ TY L++ + E ++ V+ M +
Sbjct: 639 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE---VFDQMRRE 695
Query: 651 GYKAN 655
G A+
Sbjct: 696 GLAAD 700
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | ||||||
| 225439759 | 842 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.796 | 0.640 | 0.0 | |
| 224068636 | 828 | predicted protein [Populus trichocarpa] | 0.926 | 0.809 | 0.634 | 0.0 | |
| 449448705 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.839 | 0.594 | 0.0 | |
| 30679784 | 852 | pentatricopeptide repeat-containing prot | 0.988 | 0.839 | 0.560 | 0.0 | |
| 39104565 | 852 | unknown protein [Arabidopsis thaliana] | 0.988 | 0.839 | 0.559 | 0.0 | |
| 449521499 | 855 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.988 | 0.836 | 0.585 | 0.0 | |
| 255568444 | 786 | pentatricopeptide repeat-containing prot | 0.850 | 0.782 | 0.616 | 0.0 | |
| 356572391 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.839 | 0.549 | 0.0 | |
| 357510555 | 829 | Pentatricopeptide repeat-containing prot | 0.879 | 0.767 | 0.566 | 0.0 | |
| 7413558 | 798 | putative protein [Arabidopsis thaliana] | 0.908 | 0.823 | 0.491 | 0.0 |
| >gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera] gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/685 (64%), Positives = 533/685 (77%), Gaps = 14/685 (2%)
Query: 40 LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
L +S+S P + S S+ LLS VR DL++ Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36 LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91
Query: 98 VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
++S +S+ +E+V++GI +REGR+ CVV VL+K+++LG+ PLELFDGS +L
Sbjct: 92 ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146
Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
L EC+R+L+ G+VE V L+E+L+ F PVK+L E +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A ILFC + EFGKKRDL SAL A++ASK+ L PNMY RT+IDVCG+C Y KSR
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
IYE+L +Q +T NIYVFNSLMNVN HDL +T VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
SW S+ Q +E K + IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503
Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++ILK MRE
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREA 563
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637
G+ PDVVAYTTAIK CV SK LK AFSLF EMK YQIQPNLVTY TLLRARSRYGSLHEV
Sbjct: 564 GIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEV 623
Query: 638 QQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLL 697
QQCLA+YQ M KAGYK+ND YLKELIEEWCEGVIQD N NQ + + R + RPQSLLL
Sbjct: 624 QQCLAIYQHMRKAGYKSNDYYLKELIEEWCEGVIQDNNLNQSKFSSVNRADWGRPQSLLL 683
Query: 698 EKVAVHLQKSAAENLAIDLRGLTKV 722
EKVA HLQKS AE+LAIDL+GLT+V
Sbjct: 684 EKVAAHLQKSVAESLAIDLQGLTQV 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/679 (63%), Positives = 513/679 (75%), Gaps = 9/679 (1%)
Query: 49 IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
IP VHS LLST+ + SS DY+A++ASKLA+DGRL++F MI ESV+ S
Sbjct: 45 IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104
Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
S F + LS+ VA GI K++++G +DCVV LKK ELGV+ L+ DG LLK E R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
+++ G+VE V +ME L F KEL + I+++CV+K + +A+RYA I P IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN + EFG+K L SAL AYD +K LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284
Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
++ V N+YVFNSLMNVNAHDL +T V+KNMQ LGV AD+ASYNILLKACC+AG LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
++IY EVK LE+ VLKLDVFTY IVK+FADAK WQMALK+KEDMLS+GVTPN WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404
Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
Q D+ GN D I EH K N VPNSH+ +F K+F F PT TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520
Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+QILK MR G+ PDV
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDV 580
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643
VAYTTAIKVCV +K LK AFSLF EMK QI PNLVTY TLLRAR+RYGSL EVQQCLA+
Sbjct: 581 VAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAI 640
Query: 644 YQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703
YQDM KAGYK+ND YLK+LIEEWCEGVIQD NQ QG C+RT+ RP+SLLLEKVA H
Sbjct: 641 YQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGFASCKRTDLGRPRSLLLEKVAAH 700
Query: 704 LQKSAAENLAIDLRGLTKV 722
LQ + +ENLAIDL+GLTKV
Sbjct: 701 LQNNISENLAIDLQGLTKV 719
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/734 (59%), Positives = 539/734 (73%), Gaps = 21/734 (2%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNV N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
+ +TD +N++ + NT PN + H SF F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588
YY KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTT
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTT 591
Query: 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648
AIKVCV K K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+YQDM
Sbjct: 592 AIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMR 651
Query: 649 KAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSA 708
K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HLQKS
Sbjct: 652 KSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHLQKSF 711
Query: 709 AENLAIDLRGLTKV 722
AE+L IDL+ LTKV
Sbjct: 712 AESLTIDLQELTKV 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic; Flags: Precursor gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/733 (56%), Positives = 526/733 (71%), Gaps = 18/733 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKV 722
NLAIDL+GLTK+
Sbjct: 721 GNLAIDLQGLTKI 733
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/733 (55%), Positives = 526/733 (71%), Gaps = 18/733 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709
AGYK ND +LKELIEEWCEGVIQ+ ++Q +++ N+ RP SLL+EKVA H+Q+ A
Sbjct: 661 AGYKPNDHFLKELIEEWCEGVIQENGRSQDKISDQEGDNAGRPVSLLIEKVATHMQERTA 720
Query: 710 ENLAIDLRGLTKV 722
NLAIDL+GLTK+
Sbjct: 721 GNLAIDLQGLTKI 733
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/738 (58%), Positives = 535/738 (72%), Gaps = 23/738 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRND-------YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ +TD + + + T PN + H SF +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTTAI
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAI 593
Query: 591 KVCVRSKRL------KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
KV + L K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+Y
Sbjct: 594 KVSIPLAVLVLKXNWKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIY 653
Query: 645 QDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHL 704
QDM K+G+K+ND YLKELI EWCEGVIQ NQ E+T C + + +P+ L+LEKVA HL
Sbjct: 654 QDMRKSGFKSNDHYLKELIAEWCEGVIQKNNQQPVEITPCNKIDIGKPRCLILEKVADHL 713
Query: 705 QKSAAENLAIDLRGLTKV 722
QKS AE+L IDL+ LTKV
Sbjct: 714 QKSFAESLTIDLQELTKV 731
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/615 (61%), Positives = 464/615 (75%)
Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
+S L + +A GI K++RE +D VV L ++LG+ P +LFD + LLK EC R+++
Sbjct: 41 SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100
Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
G +E + LME L + +KEL E R+++LCV++ + +LA+RYA + P IL C+
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160
Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
V++FGKK DL SAL AY+A +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220
Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
E K LE G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W S+ Q
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
DY+ D IS+ H + I PN NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460
Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587
DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+QILK MR G+ PDV+AYT
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYT 520
Query: 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
TAIKV V SK LK AFSLF EMK YQ++PNLVTY TLLRAR+RYGSL EVQQCLA+YQDM
Sbjct: 521 TAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDM 580
Query: 648 WKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKS 707
KAGYK+ND YLK+LIEEWCEGVIQD +Q Q + C+R RP SLLLEKVA HL +
Sbjct: 581 RKAGYKSNDNYLKQLIEEWCEGVIQDNDQCQDDFKPCKRAEFGRPHSLLLEKVAAHLHHN 640
Query: 708 AAENLAIDLRGLTKV 722
AE+L++DL+GLTKV
Sbjct: 641 VAESLSVDLQGLTKV 655
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/722 (54%), Positives = 501/722 (69%), Gaps = 41/722 (5%)
Query: 3 VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
V+ GSS + + +T + H KP P + KL P +S+ ++S AL
Sbjct: 5 VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53
Query: 62 TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
A +A D +L +EF ++ E + S ++ E++A +
Sbjct: 54 ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93
Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
+ IR ++ V+ L K+ ++ +GS ++ EC RL+ VE V LMEV
Sbjct: 94 LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151
Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
L F++ ++EL + I++ CV + LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211
Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
L+AY+ASKKHL++PNMYI R ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N+HDL +TL +Y+NMQ LG+ DM SYNILLKACC+AG LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW K + GE Y+ S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
N+ +T+ PN + NSH +F +RF F PTTTTYNIL+KAC TDYY KAL+ EM
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
TVGLSPN ISW+ILID CG S NVEGA++ILK M + G+ PDV+AYTTAIKVCV SK
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFM 565
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
QA +L+EEMK YQI+PN VTY TLL+ARS+YG LHEVQQCLA+YQDM KAGYK ND YL+
Sbjct: 566 QALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLE 625
Query: 661 ELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLT 720
ELIEEWCEGVIQ+ + QGE + ++ S+RPQSLLLEK+A HL K A+ LAID++GLT
Sbjct: 626 ELIEEWCEGVIQNNREKQGEFSSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLT 685
Query: 721 KV 722
KV
Sbjct: 686 KV 687
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/658 (56%), Positives = 478/658 (72%), Gaps = 22/658 (3%)
Query: 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
+LS RN+ + + + L L+EF ++ + S+ +V E++A+ ++ I+
Sbjct: 40 NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86
Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
+ + V+ L K+ G++ + L + NEC ++ G +E V LMEVL F+
Sbjct: 87 DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144
Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
L + +L + I++ C+ LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204
Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
A KK+L PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
++L +Y+NMQKLG+ DMASYNILLKACC+AG +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW SK V L E + SN E
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
++T P + +SH SF +RF F PTTTTYNIL+KAC T+YY KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN ISW+ILI+ CG S NV+G ++IL+ M + G+ PDV++YTTAIKVCV SK QA +L
Sbjct: 499 PNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTL 558
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665
+ EMK Y PNLVTY TLLRARS+YGSL EVQQ LA+YQDM KAGYK+ND YL+ELIEE
Sbjct: 559 YREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAGYKSNDYYLEELIEE 618
Query: 666 WCEGVIQDKNQNQG-EVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKV 722
WCEGVIQD + +G E + +++ +RPQSLLLEK+A HL K A+ LAID++GLTKV
Sbjct: 619 WCEGVIQDNEEYEGEEFSSSKKSEIERPQSLLLEKIASHLLKRVADILAIDVQGLTKV 676
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/737 (49%), Positives = 470/737 (63%), Gaps = 80/737 (10%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIR + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 586
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK EM+ YQI+PN DM
Sbjct: 587 IK----------------EMRRYQIKPNW---------------------------DMRN 603
Query: 650 AGYKAN----DTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQ 705
AGY+ T++ L + VIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q
Sbjct: 604 AGYEQFLLLWSTFI-SLPDGSATRVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQ 662
Query: 706 KSAAENLAIDLRGLTKV 722
+ A NLAIDL+GLTK+
Sbjct: 663 ERTAGNLAIDLQGLTKI 679
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | ||||||
| TAIR|locus:2151236 | 852 | AT5G02830 [Arabidopsis thalian | 0.896 | 0.760 | 0.592 | 9.5e-208 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.453 | 0.598 | 0.272 | 1.3e-26 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.556 | 0.566 | 0.255 | 6.8e-24 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.419 | 0.506 | 0.245 | 1.8e-18 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.630 | 0.556 | 0.215 | 1.4e-23 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.582 | 0.442 | 0.230 | 2e-23 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.495 | 0.569 | 0.244 | 6.3e-23 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.503 | 0.690 | 0.239 | 9.9e-23 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.504 | 0.632 | 0.244 | 2.3e-22 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.571 | 0.371 | 0.229 | 2.5e-22 |
| TAIR|locus:2151236 AT5G02830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 9.5e-208, P = 9.5e-208
Identities = 388/655 (59%), Positives = 492/655 (75%)
Query: 72 DYYADMASKLAKDGRLEEFAMIXXXXXXXXG-NVSKFASMLSLEMVASGIVKSIREGRID 130
+YYAD ASKLA+DGR+E+ A+I G NV++FASM+ ++++ GI ++R+G+I+
Sbjct: 82 EYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIE 141
Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
VV LK++ ++G+APL+L D S KL++ + + + +S +VE + LME+L +KE
Sbjct: 142 SVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKE 201
Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
L + F +V+ CV + LAIRYAC++P ++L C + FGKK D+VS + AY+A K+
Sbjct: 202 LVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACKQI 261
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIYV NSLMNVN+HDL +TL+
Sbjct: 262 LDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLK 321
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K +E+ G+LKLD FTY TI+
Sbjct: 322 VYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTII 381
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAGLVEQA HLFEEML +GCE
Sbjct: 382 KVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCE 441
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
PNSQC NILL ACVEACQ+DRAFRLF+SW S +L D G T + +++
Sbjct: 442 PNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGP 501
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
S+ N + NS Y KRF FKPTT TYNIL+KAC TDYYR K LM+EM+++GLSPN
Sbjct: 502 GSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPN 558
Query: 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607
I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTAIK+C +K LK AFSLFE
Sbjct: 559 QITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFE 618
Query: 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667
EM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM AGYK ND +LKELIEEWC
Sbjct: 619 EMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWC 678
Query: 668 EGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKV 722
EGVIQ+ Q+Q +++ N+ RP SLL+EKVA H+Q+ A NLAIDL+GLTK+
Sbjct: 679 EGVIQENGQSQDKISDQEGDNAGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKI 733
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 95/349 (27%), Positives = 171/349 (48%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLINGL---CLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F +R T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LF------REMSQR-GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKE 661
++P++VTY T++ G LHEV+ A+Y M + G ND L +
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEGLMKNDCTLSD 510
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 115/450 (25%), Positives = 197/450 (43%)
Query: 221 DILFCN-FVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D+ N + F K D AL+ A LS+ + +II G +++ A+
Sbjct: 268 DVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLV-SIISALADSGRTLEAEAL 326
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+LR + +N+L+ V LK + M+K GV D +Y++L+ A
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
AG A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P
Sbjct: 387 AGRWESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+ ++ +I+ ++ AM F+ ML G EP+ N L+ C C+ R
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLID-C--HCKHGR----- 494
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFD--KRF--S 510
+ E ++ ME + T N + NS+ +D KR
Sbjct: 495 --------HIVAEEMFEA-------MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGK 539
Query: 511 FKPTTTTYNILMKACCTDYYRVKALMN-------EMRTVGLSPNHISWTILIDACGGSGN 563
K N++ D Y N EM++VGL P+ + LI+A G
Sbjct: 540 MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGL 599
Query: 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E A+ ++M DG+ P ++A + I +R +AF++ + MK ++P++VTY T
Sbjct: 600 SEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTT 659
Query: 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653
L++A R +V VY++M +G K
Sbjct: 660 LMKALIRVDKFQKVP---VVYEEMIMSGCK 686
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 80/326 (24%), Positives = 149/326 (45%)
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ + ++ G + D+ +YN+++ C AG EI + L+ V DV TY+TI
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAG------EINNALSVLDRMSVSP-DVVTYNTI 210
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
++ D+ + A++V + ML P+ IT++ LI A C ++G V AM L +EM G
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRG 269
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ N+L+ + + D A + S Q + T I +
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV------ITHNII------LR 317
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
S+ +T ++ + R F P+ T+NIL+ C +A+ + +M G P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606
N +S+ L+ ++ A++ L+ M G PD+V Y T + + +++ A +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 607 EEMKHYQIQPNLVTYITLLRARSRYG 632
++ P L+TY T++ ++ G
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAG 463
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 105/488 (21%), Positives = 228/488 (46%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281
+ + + + + + L A+ + + + P+++ T++ G + +I+E+
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 282 LRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGN 339
+R+ NI FN+ + + + KFT ++++ + G+ D+ ++N LL + G
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL---AVFGQ 466
Query: 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399
+ E+ G K ++ G + + T++T++ ++ ++ A+ V ML AGVTP+
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525
Query: 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459
T+++++ A A G+ EQ+ + EM C+PN LL A + L S
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG----KEIGLMHS- 580
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFDKRFSFKPTTTT 517
L++ E Y G + + + K + + + +P + +S +R F P TT
Sbjct: 581 -LAE------EVYSGVIEPRAVLL-KTLVLVCSKCDLLPEAERAFSELKER-GFSPDITT 631
Query: 518 YNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575
N ++ KA +++ M+ G +P+ ++ L+ S + + +IL+ +
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635
G+ PD+++Y T I R+ R++ A +F EM++ I P+++TY T + + Y +
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS---YAADS 748
Query: 636 EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQS- 694
++ + V + M K G + N +++ +C+ + K++ + V R + P+
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK--LNRKDEAKLFVEDLRNLDPHAPKGE 806
Query: 695 --LLLEKV 700
LLE++
Sbjct: 807 DLRLLERI 814
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 103/446 (23%), Positives = 201/446 (45%)
Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
+ ++ + +P + I T++D + D K +++ L+ T + + L+N+
Sbjct: 439 EMEEEGIDAP-IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 305 LKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
K + LEV + M++ GV ++ +Y++++ + A ++ ++ K +K D
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPD 553
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V Y+ I+ F A++ ++M P T T+ +I+ A +G + +++ +F+
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
M + GC P N L+ VE Q ++A + TL+ V+ E +I
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG--VSANEH---TYTKIM-- 666
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR 540
+ S+ +T +++ TY L+KACC AL EM
Sbjct: 667 --QGYASVGDTGKAF--EYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
+ N + ILID G+V A +++ M+++G+ PD+ YT+ I C ++ +
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMN 781
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660
+A EEM+ ++PN+ TY TL++ +R SL E + L+ Y++M G K +
Sbjct: 782 RATQTIEEMEALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMGIKPDKAVYH 838
Query: 661 ELIEEWCEGV-IQDKNQNQGEVTLCR 685
L+ I + G +T+C+
Sbjct: 839 CLLTSLLSRASIAEAYIYSGVMTICK 864
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 95/388 (24%), Positives = 183/388 (47%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
P+++ T+++ G+C GD + ++ + + + ++ ++ ++++ N ++ L
Sbjct: 218 PDLFTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M G+ ++ +YN L++ C G A + ++ +E K + +V T+S +
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSAL 331
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
PN N L++ +A + + LFR +S+ + GNT + + Q
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFRE--MSQRGLV------GNTVTYNTLI----QG 439
Query: 490 ITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRV-KALM--NEMRTVGL 544
+ + + F K S P TY+IL+ C Y ++ KAL+ ++ +
Sbjct: 440 LFQAGDC--DMAQKIFKKMVSDGVPPDIITYSILLDGLCK-YGKLEKALVVFEYLQKSKM 496
Query: 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604
P+ ++ I+I+ +G VE + + G+ P+V+ YTT I R ++A +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 605 LFEEMKHYQIQPNLVTYITLLRARSRYG 632
LF EMK PN TY TL+RAR R G
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDG 584
|
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| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 94/393 (23%), Positives = 184/393 (46%)
Query: 254 PNMYICRTIIDVCGIC-GDYMK-SRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
P++ ++I+ G C G+ M+ + ++ + + ++ ++ ++++ N H + +
Sbjct: 140 PDIVTFTSLIN--GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH-VNYA 196
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
L ++ M+ G+ D+ Y L+ C +G A + + K +K DV T++
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM----TKRKIKPDVITFNA 252
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ F + A ++ +M+ + PN T++SLIN G V++A +F M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ L+ + + D A ++F + +S+ + GNT + + Q
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLT------GNTITYTTLIQGFGQ 364
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEM--RTV-G 543
PN V +S R P TYN+L+ C + KALM +M R + G
Sbjct: 365 --VGKPN-VAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG 420
Query: 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++PN ++ +L+ +G +E AL + + MR+ M ++ YT I+ ++ ++K A
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636
+LF + ++PN+VTY T++ R G HE
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHE 513
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 98/401 (24%), Positives = 183/401 (45%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D G+ G +KSR + +I+ FN L++ A KF L + + MQ+LG+
Sbjct: 68 DAIGLFGGMVKSRPLP----------SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +YNIL+ C LA + G++ L G + + T S+++ + K
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKL---GY-EPSIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D AF L +K + + Y D + H+D + N
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHED-----DALNL----- 282
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDAC 558
++ + + +P TY+ L+ C +Y R L+++M ++PN +++ LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLISCLC-NYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
G + A ++ M + + PD+ Y++ I RL +A +FE M PN+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND-TY 658
VTY TL+ + + + + ++++M + G N TY
Sbjct: 401 VTYNTLING---FCKAKRIDEGVELFREMSQRGLVGNTVTY 438
|
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 102/444 (22%), Positives = 193/444 (43%)
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
K R A+ Y P++ +++ G D + +++ + + N+Y
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
F + V A + E+ K M G D+ +Y +L+ A C A A+E++ ++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K G K D TY T++ F+D + + +M G P+ +T++ L++A
Sbjct: 320 K----TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW-TLSKTQVALG 469
AG +A + M G PN N L+ + + D A LF + +L A
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 470 E----DYDGNT-DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524
DY G + D +S +E +K T PN + + Y+ L KA
Sbjct: 436 YIVFIDYYGKSGDSVSALETFEKMK---TKGIAPNIVACN----------ASLYS-LAKA 481
Query: 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584
D K + ++ +GL P+ +++ +++ G ++ A+++L M E+G PDV+
Sbjct: 482 G-RDR-EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
+ I ++ R+ +A+ +F MK +++P +VTY TLL + G ++Q+ + ++
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG---KIQEAIELF 596
Query: 645 QDMWKAGYKANDTYLKELIEEWCE 668
+ M + G N L + C+
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCK 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYL7 | PP361_ARATH | No assigned EC number | 0.5607 | 0.9889 | 0.8392 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00023063001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (818 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 723 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-27
Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 63/362 (17%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
N++ +ID C G K+ Y +RS+NV + VFN+L++ A D F
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF-- 562
Query: 310 EVYKNM--QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+V M + + D + L+KAC AG A+E+Y + KG ++ Y+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YT 618
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
V + W AL + +DM GV P+ + +S+L++ +AG +++A + ++ +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
G + + + L+ AC A + +A L+ K
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------ 714
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
+PT +T N L+ A C KAL ++EM+ +GL
Sbjct: 715 -----------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN I+++IL+ A + + L +L +EDG+ P++V +C+R R ++A +L
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809
Query: 606 FE 607
E
Sbjct: 810 GE 811
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-25
Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 58/350 (16%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++++N+L+ C + Q+I G V L + LK D Y+T++ A +
Sbjct: 437 LSTFNMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
+V +M++AGV N T+ +LI+ CA AG V +A + M +P+ N L+
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
AC ++ DRAF D ++ M+ + P
Sbjct: 551 ACGQSGAVDRAF-----------------------DVLAEMKAE------THP------- 574
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
P T LMKAC R K + + + +TI +++C
Sbjct: 575 ---------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619
G+ + AL I M++ G+ PD V ++ + V + L +AF + ++ + I+ V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669
+Y +L+ A S + ++ L +Y+D+ + + + LI CEG
Sbjct: 686 SYSSLMGACS---NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 103/430 (23%), Positives = 169/430 (39%), Gaps = 83/430 (19%)
Query: 269 CGDYMKSRAIYE-----DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
CGD + +R +++ D S N ++ Y N LE++ M++L V D
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-------LELFFTMRELSVDPD 287
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ + ++ AC L G+ L +E++G V K +DV +++++++ W A
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
KV M T + ++W+++I+ GL ++A+ + M Q P+ +L AC
Sbjct: 344 KVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 444 VEACQFDRAFRLF----RSWTLSKTQVA--LGEDY------DGNTDRISNMEHKDKQSIT 491
D +L R +S VA L E Y D + N+ KD S T
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 492 NTPN-FVPNSHYSSFDKRFSF-------KPTTTTYNILMKACCTDYYRVKALM------- 536
+ N F+ F KP + T + AC R+ ALM
Sbjct: 460 SIIAGLRLN--NRCFEALIFFRQMLLTLKPNSVTLIAALSACA----RIGALMCGKEIHA 513
Query: 537 NEMRT-VGLS---PNHI-------------------------SWTILIDACGGSGNVEGA 567
+ +RT +G PN + SW IL+ G A
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLR 626
+++ M E G++PD V + + + C RS + Q F M+ Y I PNL Y ++
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 627 ARSRYGSLHE 636
R G L E
Sbjct: 634 LLGRAGKLTE 643
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
P+ +T+++LI+ G VE+A+ LF EM + G +PN +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627
PDVV Y T I + ++++A LF EMK I+PN+ TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 71/223 (31%)
Query: 513 PTTTTYNILMKACCTDY-----YRVKALM------------------------------- 536
PT +T+N+LM C + RV L+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 537 -NEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
+EM G+ N ++ LID C +G V A IMR + PD V + I C +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 596 SKRLKQAFSLFEEMKH--YQIQPNLVTYITLL----------RARSRYGSLHE------- 636
S + +AF + EMK + I P+ +T L+ RA+ Y +HE
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 637 ------VQQC---------LAVYQDMWKAGYKANDTYLKELIE 664
V C L++Y DM K G K ++ + L++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 523 KAC-----CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
KAC + +R L+ P ++ +L+ C S +++GAL++L++++E
Sbjct: 414 KACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634
G+ D YTT I C +S ++ F +F EM + ++ N+ T+ L+ +R G +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
DV TY+T++ + + ALK+ +M G+ PN T+S LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
P+ +++ LID G VE AL++ M++ G+ P+V Y+ I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDL-KFTLEVY 312
+ ++ +ID+ CGD +R +++ + + +NS++ A H + L +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVK 371
M+ GV D +++I+++ A++ + G ++ LD+ + +V
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPLDIVANTALVD 368
Query: 372 VFADAKWWQM--ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ KW +M A V + M P N I+W++LI N G +A+ +FE M+
Sbjct: 369 LYS--KWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
G PN +L AC + ++ + +F+S +
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 44/328 (13%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
LE Y M++ V D + +L AC G+ + +++ + E KG++ V +
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH---ELAERKGLISYVVVANAL 430
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQA 427
I ++++ K AL+V ++ + I+W+S+I N E A+ F +ML
Sbjct: 431 I-EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFE-ALIFFRQML-L 483
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKD 486
+PNS + L A + AC A + + +G + + N + ++ +
Sbjct: 484 TLKPNS----VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRC 537
Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR------VKALMNEMR 540
+ F NSH + ++NIL+ T Y L N M
Sbjct: 538 GRMNYAWNQF--NSH----------EKDVVSWNILL----TGYVAHGKGSMAVELFNRMV 581
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRL 599
G++P+ +++ L+ AC SG V L+ M E ++P++ Y + + R+ +L
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641
Query: 600 KQAFSLFEEMKHYQIQPNLVTYITLLRA 627
+A++ +M I P+ + LL A
Sbjct: 642 TEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P TYN L+ C L NEM+ G+ PN +++ILID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 68/372 (18%), Positives = 154/372 (41%), Gaps = 36/372 (9%)
Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
CG + +R +++++ +N + + +++ V+A + + +++ M + G A+ +
Sbjct: 171 CGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
+ ++L+A G+ Q+++ V G D F ++ +++ + A V
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIEDARCVF 282
Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
+ M T+ W+S++ A G E+A+ L+ EM +G + +I+++
Sbjct: 283 DGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
+ A + + D NT + + K V FD
Sbjct: 339 ALLEHA----KQAHAGLIRTGFPLDIVANTALV---DLYSKWGRMEDARNV-------FD 384
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
+ + ++N L+ KA + M G++PNH+++ ++ AC SG
Sbjct: 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 565 EGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E +I + M E+ + P + Y I++ R L +A+++ ++ +P + +
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAA 499
Query: 624 LLRARSRYGSLH 635
LL A + +L
Sbjct: 500 LLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++ +N+L++ ++ L+++ M+K G+ ++ +Y+IL+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+T+++LI+ AG VE+A+ LF+EM + G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 100/494 (20%), Positives = 195/494 (39%), Gaps = 73/494 (14%)
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---- 220
L G++E + L+E ++E R+PV E D + +LC K V R +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
+ + FVR FG +LV A + + +++ ++ G + ++
Sbjct: 120 GVRLGNAMLSMFVR-FG---ELVHAWYVF----GKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
+Y + V ++Y F ++ DL EV+ ++ + G D+ N L+
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
G+ V A+ ++ + + D +++ ++ + + L++ M
Sbjct: 232 YVKCGDVVSARLVF--------DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
V P+ +T +S+I+AC G + +++ G + CN L+Q + + A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-----PNFVPNSH---YSSF 505
++F S ME KD S T N +P+ Y+
Sbjct: 344 KVF-----------------------SRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 506 DKRFSFKPTTTTYNILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTI----LIDACGG 560
++ + P T ++ AC C V ++E+ IS+ + LI+
Sbjct: 381 EQD-NVSPDEITIASVLSACACLGDLDVGVKLHEL---AERKGLISYVVVANALIEMYSK 436
Query: 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620
++ AL++ + E DV+++T+ I + R +A F +M ++PN VT
Sbjct: 437 CKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVT 491
Query: 621 YITLLRARSRYGSL 634
I L A +R G+L
Sbjct: 492 LIAALSACARIGAL 505
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 7e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G+ P+ +T+++LI+ AG V++A+ L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+T++SLI+ AG +E+A+ LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
T+++L+ A A AG + A+ + EEM +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
+++ LID +G VE AL++ K M+E G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 79/357 (22%)
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
LEA L TY +V+ K + V + S+G P+ + ++ G
Sbjct: 113 LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-W------------ 459
++ A LF+EM E N ++ V+A + AF LFR W
Sbjct: 173 MLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--------YSSF----DK 507
+ + LG G + V ++ YS D
Sbjct: 229 VMLRASAGLGSARAG----------QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 508 RFSF----KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGS 561
R F + TT +N ++ Y +AL EMR G+S + +++I+I
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK--------------------- 600
+E A Q + G D+VA T + + + R++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 601 ----------QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
+A +FE M + PN VT++ +L A RY L +Q ++Q M
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGL--SEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
G+ PDVV Y T I R+ R+ +A L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
+ Y + ++ A ++ EEMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617
V Y T I ++ R+++A LF+EMK I+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579
+++ LI +G +E AL++ K M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ N L+ + + + A +LF + M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-----------------------NEM-------- 29
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
K+ KP TY+IL+ C
Sbjct: 30 ----------------KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP 581
++ L+ A +G+ + AL +L+ M+ G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
TY+T++ A + AL++ ++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.08 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.46 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.16 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.16 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.58 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.16 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.08 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.04 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.96 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.94 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.57 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.15 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.04 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.78 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.78 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.55 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.76 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.51 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.43 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.88 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.68 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.54 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.94 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.31 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.18 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.95 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.67 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.46 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.41 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.65 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.64 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 88.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.01 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.94 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.35 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.78 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.27 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.62 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.47 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.82 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.71 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.61 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.53 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.46 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.17 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=583.66 Aligned_cols=587 Identities=17% Similarity=0.182 Sum_probs=502.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhh----------------------------HHHHHhHHH
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (723)
+...++.++..+++.|++++|..+|+.|...|..|+..+.... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677889999999999999999999999888766654432111 122356778
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.|++.|+++.|.++|++|.+ |+. .+++.++.++.. .|++++|+.+|++|...++.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~----~~~n~li~~~~~---~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDL----FSWNVLVGGYAK---AGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCe----eEHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 88999999999999999874 443 477888887666 8999999999999999988775 45688899999
Q ss_pred hcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004922 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 276 (723)
...+++..+.+++..+ .++..+++.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999999887764 56778999999999999999999999999975 78999999999999999999999
Q ss_pred HHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 277 ~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
++|++|.+.|+.||..||+.++.+++ ++.+.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|+.|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999866 7899999999999999999999999999999999999999999999985
Q ss_pred hcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
+|+.++++|++.|++++|.++|++|...+... ++.....+...... .....+...|. .++.||
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs-----~~~mi~~~~~~g~~-----------~eA~~lf~~m~-~~~~pd 488 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVIS-----WTSIIAGLRLNNRC-----------FEALIFFRQML-LTLKPN 488 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee-----HHHHHHHHHHCCCH-----------HHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999987643211 11111000000000 00000111122 247999
Q ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 515 ~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
..||+.+|.+|++ +.+.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|+++ .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 9999999999985 78999999999999999999999999999999999999999999987 6899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh-hh
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEWCE-GV 670 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~-g~ 670 (723)
|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++ ++++|++|. +.|+.|+..+|+.++++|++ |.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999666 666999999 69999999999999999999 99
Q ss_pred hhhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhhhhhh
Q 004922 671 IQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENL 712 (723)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 712 (723)
+++|.++.+++. -++....+..++..+...+..++
T Consensus 641 ~~eA~~~~~~m~-------~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 641 LTEAYNFINKMP-------ITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChHH
Confidence 999999988763 23445555555555555444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=550.21 Aligned_cols=513 Identities=21% Similarity=0.334 Sum_probs=396.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...|..+...+++.|++++|.++|+.|...+.. ++... ...++..+.+.|.+++|+.+|+.|.. |+.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~-------~~~li~~~~~~g~~~eAl~lf~~M~~----pd~- 437 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY-------HAKFFKACKKQRAVKEAFRFAKLIRN----PTL- 437 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHH-------HHHHHHHHHHCCCHHHHHHHHHHcCC----CCH-
Confidence 566777777777888888888888888777643 23221 13445556777888888888877763 543
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.+++.++.+|+. .|++++|.++|+.|.+.+..| +..+|+.|+.
T Consensus 438 ---~Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-------------------------------D~~tynsLI~ 480 (1060)
T PLN03218 438 ---STFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-------------------------------DCKLYTTLIS 480 (1060)
T ss_pred ---HHHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHH
Confidence 366777776665 788888888888888777554 3467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (723)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+++ |+++.
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888765 67888
Q ss_pred HHHHHHHHHH--cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 308 a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+ .| +.|+..+|+.+|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888865 56788888888888888888888888888888876 44 678888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcc
Q 004922 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~ 465 (723)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-- 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-- 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888776543
Q ss_pred cccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcC
Q 004922 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~ 543 (723)
+.||..+||.+|.+|++ +.++|.++|++|...|
T Consensus 715 ---------------------------------------------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 715 ---------------------------------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 47888888888888874 6788888888888888
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 004922 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (723)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~ 600 (723)
+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 8888888888888888888888888888888888888888888888765432 1 2245
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhccccc
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~~~a~~~~~~ 680 (723)
+|..+|++|++.|+.||..||+.++.++++.+..+. +..++++|...+..|+..+|++||+++++- .++|..++++
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-~~~A~~l~~e 905 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY-DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-hHHHHHHHHH
Confidence 788888888888888888888888877666666554 444777777777788888888888887541 2457777666
Q ss_pred chHhhhc
Q 004922 681 VTLCRRT 687 (723)
Q Consensus 681 ~~~~~~~ 687 (723)
+...+-.
T Consensus 906 m~~~Gi~ 912 (1060)
T PLN03218 906 AASLGVV 912 (1060)
T ss_pred HHHcCCC
Confidence 6654443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=550.62 Aligned_cols=476 Identities=20% Similarity=0.300 Sum_probs=438.5
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC-CcchHHHHHHHHHhcCC
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRD 236 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~ 236 (723)
++..+..+.+.|++++|+++|++|...+..+.+...+..++..|.+.|.+++|.++++.++. +..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 44444555568999999999999999998777778888899999999999999999998854 55889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKN 314 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~ 314 (723)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+++ |++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876 799999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
|...|+.||..+|+.||.+|++.|++++|.++|++|... ..| +.||..+|+++|.+|++.|++++|.++|+.|.+.|+
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999752 123 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCC
Q 004922 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474 (723)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 474 (723)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|+.|.+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G----------- 679 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG----------- 679 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred chhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWT 552 (723)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~ 552 (723)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..+|+
T Consensus 680 ------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 680 ------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred ------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999985 7899999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR-- 630 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 630 (723)
.||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred --cCChH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 631 --YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 631 --~g~~~----------------~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
++... -...|+.+|++|.+.|+.||..||+.+|.++++ +....+....+++.
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 11110 124588999999999999999999999988876 66666666655444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=544.80 Aligned_cols=563 Identities=16% Similarity=0.192 Sum_probs=491.5
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
..+......++.++..|.+.|+++.|..+|+.|... +. ..++.++..|++.|++++|+++|++|.+.|+
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d~-------~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DL-------FSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC----Ce-------eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 344455778999999999999999999999999643 32 2346778889999999999999999999999
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC-Ccch
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADIL 223 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 223 (723)
.|+.. +++.++++|.. .++++.+.+++..+.+.|..+ +...++.++..|.+.|+++.|.++|+.++. +..+
T Consensus 184 ~Pd~~----t~~~ll~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s 255 (857)
T PLN03077 184 RPDVY----TFPCVLRTCGG---IPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255 (857)
T ss_pred CCChh----HHHHHHHHhCC---ccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcch
Confidence 99776 67778887765 788999999999999999876 456789999999999999999999999865 5689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc-
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~- 302 (723)
|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+|++++..++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 -~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
|+++.|.++|++|. .||..+||.++.+|++.|++++|.++|++|.. .| +.||..+|+.++.+|++.|++++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHH
Confidence 79999999999997 57999999999999999999999999999986 55 89999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 56889999999999999999999999999975
Q ss_pred hhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHH
Q 004922 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m 539 (723)
. ..++..+. .......... ...-....+...+.+.|+.+|..++|++|.+|++ +.++|.++|+.+
T Consensus 484 ~-~~pd~~t~-~~lL~a~~~~-----------g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 484 T-LKPNSVTL-IAALSACARI-----------GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred C-CCCCHhHH-HHHHHHHhhh-----------chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 3 32221110 0000000000 0000011223345667889999999999999985 789999999987
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCH
Q 004922 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNL 618 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~ 618 (723)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|. +.|+.|+.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 589999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
.+|++++.+|++.|++++| .+++++| .++||..+|++|+.+|.. |+.+.+....+++.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA---~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEA---YNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHhCCCHHHH---HHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999998775 4588887 589999999999999876 77776665554444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=515.99 Aligned_cols=461 Identities=16% Similarity=0.222 Sum_probs=411.0
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcC-CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
..++..+.+.|++++|+++|++|.+.+ ..|+.. +++.++.+|.. .++++.|..++..|.+.|..|+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~~------ 157 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEPD------ 157 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCcc------
Confidence 456677888899999999999988754 556554 77788887776 7899999999999998886543
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|
T Consensus 158 -------------------------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 158 -------------------------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -------------------------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHH
Confidence 46788899999999999999999999975 8899999999999999999999
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004922 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (723)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 353 (723)
+++|++|.+.|+.||..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999876 5788899999999999999999999999999999999999999999885
Q ss_pred hhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004922 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 354 ~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (723)
.+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 287 ------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 287 ------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|+.++++|++.|++++|.++|++|. .|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~ 389 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RK 389 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CC
Confidence 999999999999999999999999874 67
Q ss_pred CHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004922 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAI 590 (723)
Q Consensus 514 ~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 590 (723)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999985 6899999999999999999999999999999999999999999999976 69999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Q 004922 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE- 668 (723)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~- 668 (723)
.+|++.|++++|.+++++| ++.||..+|++++.+|+..|+++.+++ +++++. ++.|+ ..+|..|+..|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhC
Confidence 9999999999999998876 578999999999999999999887655 566664 44454 6689999999998
Q ss_pred hhhhhhhcccccchHhhh
Q 004922 669 GVIQDKNQNQGEVTLCRR 686 (723)
Q Consensus 669 g~~~~a~~~~~~~~~~~~ 686 (723)
|++++|.++.+.+...+-
T Consensus 542 G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999988876654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=494.74 Aligned_cols=468 Identities=16% Similarity=0.229 Sum_probs=427.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...|+.++..+.+.|++++|+.+|+.|...+ ..|+.+ .+..++.++.+.++++.|.+++..|.+.|+.|+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-------t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-------TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4589999999999999999999999998765 355533 34677788899999999999999999999999765
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
+++.++..+.. .|++++|.++|++|.+ ++..+|+.++.
T Consensus 160 ----~~n~Li~~y~k---~g~~~~A~~lf~~m~~-----------------------------------~~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLLMHVK---CGMLIDARRLFDEMPE-----------------------------------RNLASWGTIIG 197 (697)
T ss_pred ----HHHHHHHHHhc---CCCHHHHHHHHhcCCC-----------------------------------CCeeeHHHHHH
Confidence 66667665554 8999999999998743 23478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (723)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|++++..|+ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
|.++|++|. ++|..+||.++.+|++.|++++|.++|++|.. .| +.||..||+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999996 57999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccc
Q 004922 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (723)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~ 467 (723)
.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999995 5799999999999999999999999999998765
Q ss_pred cCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHH-cCC
Q 004922 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~-~~~ 544 (723)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 59999999999999985 68999999999986 699
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYIT 623 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 623 (723)
.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999998876 5799999999999999999999999999999974 567 4789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCC
Q 004922 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (723)
Q Consensus 624 ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p 654 (723)
+++.|++.|++++|. +++++|.+.|++.
T Consensus 534 L~~~y~~~G~~~~A~---~v~~~m~~~g~~k 561 (697)
T PLN03081 534 LLNLYNSSGRQAEAA---KVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHhCCCHHHHH---HHHHHHHHcCCcc
Confidence 999999999988854 5999999999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-28 Score=286.96 Aligned_cols=538 Identities=14% Similarity=0.059 Sum_probs=317.9
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+...|.. ...+..++..+.+.|++++|+..++.+... .|.... .+..+...+...|++++|.+.|++
T Consensus 318 ~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 318 LNQILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPA------ALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33335566666 666777778888888888888888887766 333221 223344456778888888888888
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+ ..|+.. ..+..+.. .+...|++++|+..++.+.+.. |........++..+.+.|++++|.+.+..+
T Consensus 389 ~~~--~~~~~~---~~~~~l~~---~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 389 ATE--LDPENA---AARTQLGI---SKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHh--cCCCCH---HHHHHHHH---HHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 776 344322 12222222 2333677777887777776644 445555666677777777777777776553
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|.+..++..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 4555677777777777777777777777776642 2345566677777777777777777777776653 2244455
Q ss_pred HHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
..+...+ .|+.++|...++++...+ +.+...+..+...+...|++++|..+++.+... .+.+...|..+..+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence 5554443 367777777777776654 345556666777777777777777777777642 23455677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|...|++++|...|+++.+.... +...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665422 55666777777777777777777777776653 34566677777777777777777
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~ 530 (723)
.++++.+.... +.+...+..+...+. ++.+
T Consensus 689 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 689 KKIAKSLQKQH------------------------------------------------PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHHhhC------------------------------------------------cCChHHHHHHHHHHHHCCCHH
Confidence 77777665432 122233333333332 2445
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|...+..+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...++.+...|...|+.++|.++|+++.
T Consensus 721 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5555555554432 223444444555555555555555555554432 2234444455555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
+.. ..+...++.+...+...|+ .+ |+.+++++.+.... +..++..+...+.+ |++++|.+.+.+..
T Consensus 798 ~~~-p~~~~~~~~l~~~~~~~~~-~~---A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 798 KKA-PDNAVVLNNLAWLYLELKD-PR---ALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCc-HH---HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2344445555555555554 22 33344444432211 22333344444443 55555555444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-27 Score=277.44 Aligned_cols=539 Identities=13% Similarity=0.082 Sum_probs=350.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..+...+...|++++|...+++++.. .|..... ...+...+...|++++|...++.
T Consensus 284 ~~~~l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 284 LQDALKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQA------RRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33345556665 445555666677777777777777777766 3332221 12333446677777777777777
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+. .|... ..+..+... +...|++++|..+|+++.+.. |+....+..++..+...|++++|.+.+..+
T Consensus 355 ~~~~--~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 355 ALGL--DPDDP---AALSLLGEA---YLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHhc--CCCCH---HHHHHHHHH---HHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7653 23211 233333333 333677777777777776644 566666777777777777777777776653
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|........++..+.+.|++++|..+++.+... .+.+..++..+...|...|++++|...|+++.+... .+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHH
Confidence 344455666777777777777777777777653 234566777777777777777777777777766431 222333
Q ss_pred HHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 295 NSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
..+... ..|++++|.+.|+.+...+ +.+..++..+...+.+.|+.++|...++++... .+.+...+..++..
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHH
Confidence 333332 3467777777777776654 345667777777777777777777777777652 23445566677777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|.+.|++++|..+++.+.... +.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 3356677777777777777777777777776653 34556677777777777777777
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~ 530 (723)
...++++.... +.+..++..+...+. ++.+
T Consensus 655 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 655 ITSLKRALELK------------------------------------------------PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHhcC------------------------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 77777765431 233455555555554 4677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|..+++.+.+.+ +.+...+..+...+.+.|++++|...|+++... .|+..++..+..++.+.|++++|.+.++++.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777654 345566677777777777777777777777764 3455666667777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchH
Q 004922 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTL 683 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~ 683 (723)
+.. ..+...+..+...|.+.|+.++ |..+|+++.+... .+...++.+...+.+ |+ .+|...+++...
T Consensus 764 ~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 764 KTH-PNDAVLRTALAELYLAQKDYDK---AIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HhC-CCCHHHHHHHHHHHHHCcCHHH---HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 642 3466677777777777777655 4447777766543 356667777776666 55 556666555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-20 Score=218.81 Aligned_cols=580 Identities=12% Similarity=0.016 Sum_probs=380.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHH----------HHHhHHHhhhccCc
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (723)
+.+.+..+|++ +..+..++..+...|+.++|.+.++++.+.. |.......... ........+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 44457788998 8889999999999999999999999999994 44322211100 11233445789999
Q ss_pred cchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH
Q 004922 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (723)
Q Consensus 129 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (723)
+++|+..|+.+.+. .|.... .... +..... ...|+.++|+..|+++++.. |.+...+..++..+...|+++
T Consensus 128 ~~eA~~~~~~~l~~--~p~~~~--la~~-y~~~~~--~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNG--APPELD--LAVE-YWRLVA--KLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccC--CCCChH--HHHH-HHHHHh--hCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 99999999999974 332210 0111 111111 12599999999999999876 888888999999999999999
Q ss_pred HHHHHhhhCCCCc------------------------chH----------------------------------HHHHHH
Q 004922 209 LAIRYACIVPRAD------------------------ILF----------------------------------CNFVRE 230 (723)
Q Consensus 209 ~A~~~~~~~~~~~------------------------~~~----------------------------------~~l~~~ 230 (723)
+|+..++.+.... ..+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9998877641100 000 012445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHH-----------
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLM----------- 298 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll----------- 298 (723)
+...|++++|+..|++..+... .+..++..+..+|.+.|++++|+..|++..+..... +...|..++
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6778999999999999987532 378889999999999999999999999998764322 222222221
Q ss_pred ---hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 299 ---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 299 ---~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
....+++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-
Confidence 123479999999999998875 446677778889999999999999999999873 1233445555655553
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004922 376 AKWWQMALKVKEDMLSAGVT--------PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (723)
.++.++|..+++.+...... .....+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 45677777777654322100 012245566677777788888888888777653 335566667777777888
Q ss_pred CHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH---------H
Q 004922 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT---------Y 518 (723)
Q Consensus 448 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---------~ 518 (723)
++++|...++++......... ..... ..+.. .......... ....+......++... +
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~--~~~a~-al~l~-~~~~~~~Al~---------~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPE--QVYAY-GLYLS-GSDRDRAALA---------HLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHH--HHHHH-HHHHH-hCCCHHHHHH---------HHHhCCchhcChhHHHHHHHHhhhHH
Confidence 888888888776643221100 00000 00000 0000000000 0000000000111111 1
Q ss_pred HHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 519 NILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 519 ~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
......+. ++.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 11222232 467788887762 34456677788899999999999999999999853 22577888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHh-h
Q 004922 597 KRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK--A---NDTYLKELIEEWCE-G 669 (723)
Q Consensus 597 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~--p---~~~~~~~li~~~~~-g 669 (723)
|+.++|.+.++...+. .| +..++..+..++...|+.++| .++++++...... | +...+..+...+.+ |
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA---~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA---QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH---HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999988753 44 456677778888889997774 5588888764432 2 22344444555554 8
Q ss_pred hhhhhhcccccchH
Q 004922 670 VIQDKNQNQGEVTL 683 (723)
Q Consensus 670 ~~~~a~~~~~~~~~ 683 (723)
+.++|.+.+...+.
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 89999888776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-19 Score=207.44 Aligned_cols=578 Identities=12% Similarity=0.043 Sum_probs=339.7
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
......+......++.+.|.+.+.+++.. +|+.... +...+..+.+.|+.++|...++++.+ +.|+....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~------~~~~~~~~l~~g~~~~A~~~l~~l~~--~~P~~~~~ 98 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELI--DPNNPDV------IAARFRLLLRQGDSDGAQKLLDRLSQ--LAPDSNAY 98 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHH------HHHHHHHHHhCCCHHHHHHHHHHHHh--hCCCChHH
Confidence 33555677788899999999999999988 6664333 34455568899999999999999998 45654322
Q ss_pred cchhhh----------hHHHHHHhhccchHHHHHHHHHHHHhcCCCCccccc-HHHHHHHHhcCCChHHHHHHhhhC---
Q 004922 152 GSGFKL----------LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE-EFRIVQLCVNKPDVNLAIRYACIV--- 217 (723)
Q Consensus 152 ~~~~~~----------l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (723)
...... .+.....+...|++++|+..|+.+.+.. |+.... ...........++.++|++.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 111111 1222223445899999999999998754 333221 112222233568999999988775
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 004922 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-------------------NMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
|.+..++..+...+...|++++|+..++++.+..... ....+...+..+-.......|..
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 7777888899999999999999999999986532100 00111111222222223445555
Q ss_pred HHHHHHhCCCcccHHH-HHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc
Q 004922 278 IYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 356 (723)
.+..+......|+... .........|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+....
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555443322333221 11222234578888888888887764 346777778888888888888888888887763110
Q ss_pred CCccccHHHH------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 357 GVLKLDVFTY------------STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 357 g~~~~~~~~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
.+....| ......+.+.|++++|...|+++++..+. +...+..+...+...|++++|++.|++.
T Consensus 336 ---~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 336 ---SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred ---ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 12234566788888888888888876533 5666777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccc
Q 004922 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (723)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (723)
.+.. +.+...+..+...|. .++.++|..+++.+..............-....+........ .. .-.......
T Consensus 412 L~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~----~~--g~~~eA~~~ 483 (1157)
T PRK11447 412 LRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE----NQ--GKWAQAAEL 483 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH----HC--CCHHHHHHH
Confidence 7753 233445555555443 345566666655433221000000000000000000000000 00 000000000
Q ss_pred cccccCCCcC-HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHH----------------------------
Q 004922 505 FDKRFSFKPT-TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI---------------------------- 553 (723)
Q Consensus 505 ~~~~~~~~p~-~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~---------------------------- 553 (723)
+.+.....|+ ...+..+...|. ++.++|...++++.+.... +...+..
T Consensus 484 ~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 484 QRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 0000112332 233333333333 3566777766666653211 2222222
Q ss_pred ----------------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 004922 554 ----------------LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP- 616 (723)
Q Consensus 554 ----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 616 (723)
+...+...|+.++|..+++. ...+...+..+...+.+.|+.++|++.|++..+. .|
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~ 635 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPG 635 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 22334445555555555541 1334556677888899999999999999999874 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-hhhhhhhcccccchHhhhc
Q 004922 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRT 687 (723)
Q Consensus 617 ~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~~~ 687 (723)
+...+..+...+...|+.++|.+ .++...+. .|+ ...+..+...+.+ |+.++|.+.++.+......
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~---~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARA---QLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHH---HHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 68889999999999999887554 66665543 333 4455556666666 9999999988877655433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-21 Score=187.73 Aligned_cols=370 Identities=13% Similarity=0.104 Sum_probs=314.6
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
.+.+++..|-. .+.|..++..+-..|++.+|+.+|+.+++. +|... +++.++..++..+|+.+.|...|..
T Consensus 105 ~~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fi------da~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 105 SLLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFI------DAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchhh------HHHhhHHHHHHhcCCCcccHHHHHH
Confidence 33456777777 889999999999999999999999999999 77643 4455666679999999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
.++ +.|+.....+..+.|+++ .|+.++|-..+-+.++.. |.....|+.++-.+..+|+.-.|++.|+++
T Consensus 176 alq--lnP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHh--cCcchhhhhcchhHHHHh------hcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 997 788776555555555542 799999999999888755 888999999999999999999999999885
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~ 292 (723)
|.-..+|.+|...|-..+.++.|+..|.+.... .| ...++..+...|-..|..+-|+..|++..+. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 555689999999999999999999999998863 45 4678889999999999999999999999876 455 45
Q ss_pred HHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHH
Q 004922 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTI 369 (723)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~l 369 (723)
.|+.+-.+.. |++.+|.+.|....... +......+.|.+.|...|.+++|..+|..... +.|.- ..++.|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNL 394 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNL 394 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhH
Confidence 6777777644 89999999999998864 33467788899999999999999999999887 55554 578999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
...|-+.|++++|+..|++.+.. .|+ ...|+.+...|-..|+.+.|.+.+.+.++.+ +.-....+.+...|-.+|+
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCC
Confidence 99999999999999999999875 555 5689999999999999999999999998763 2234578889999999999
Q ss_pred HHHHHHHHHHhhh
Q 004922 449 FDRAFRLFRSWTL 461 (723)
Q Consensus 449 ~~~a~~l~~~~~~ 461 (723)
+.+|++-|+...+
T Consensus 472 i~~AI~sY~~aLk 484 (966)
T KOG4626|consen 472 IPEAIQSYRTALK 484 (966)
T ss_pred cHHHHHHHHHHHc
Confidence 9999999998775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=177.02 Aligned_cols=438 Identities=16% Similarity=0.151 Sum_probs=282.2
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHH
Q 004922 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (723)
Q Consensus 60 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 139 (723)
+++....|.. ......|+..+-+.|++++|+......-.. +|+.-..++..+.. +.+..+++.-..--...
T Consensus 38 ~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~a 108 (966)
T KOG4626|consen 38 LQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLLA 108 (966)
T ss_pred HHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhhh
Confidence 3443344444 344567777788899999999988877666 55554444444333 55666666544443334
Q ss_pred hhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--
Q 004922 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (723)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (723)
++ ..| .....++.+.+.+.. .|+..+|+.+++.+++.. |+....|..++.++...|+.+.|.+.|...
T Consensus 109 ~r--~~~---q~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 109 IR--KNP---QGAEAYSNLANILKE---RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hh--ccc---hHHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 43 233 133466666666555 899999999999998865 777777777777777777776666655442
Q ss_pred --CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 --PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|...-+...+...+-..|++++|...|.+..+. .|. ..+|..|...+-..|+...|+..|++.++.
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------- 247 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------- 247 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---------
Confidence 322233334555555566666666666666552 232 345666666666666666666666665543
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~ 372 (723)
.|+ ...|-.|.+.|...+.++.|...|..... ..|+ ...+..+...
T Consensus 248 --------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 248 --------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACI 295 (966)
T ss_pred --------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEE
Confidence 233 45677788888888888888888888776 3444 4567777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|...|.++-|++.|++.++..+. =...|+.|..++-..|++.+|.+.+.+..... .-.....+.+...|...|.++.|
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 88888888888888888875322 25678888888888888888888888887753 44566788888888888888888
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a 532 (723)
..+|.....- .|.
T Consensus 374 ~~ly~~al~v-------------------------------------------------~p~------------------ 386 (966)
T KOG4626|consen 374 TRLYLKALEV-------------------------------------------------FPE------------------ 386 (966)
T ss_pred HHHHHHHHhh-------------------------------------------------Chh------------------
Confidence 8888654421 111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
-...++.|...|-.+|++++|+..+++.+. ++|+ ...|+.+...|-..|+.+.|.+.+.+.+.
T Consensus 387 --------------~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 387 --------------FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred --------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 122345556666666666666666666665 4555 44666666666666666666666666655
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 612 YQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 612 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
+.|. ...++-|...|-.+|++.+ |+.-++...+
T Consensus 451 --~nPt~AeAhsNLasi~kDsGni~~---AI~sY~~aLk 484 (966)
T KOG4626|consen 451 --INPTFAEAHSNLASIYKDSGNIPE---AIQSYRTALK 484 (966)
T ss_pred --cCcHHHHHHhhHHHHhhccCCcHH---HHHHHHHHHc
Confidence 3453 4455566666666666544 3334444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-17 Score=178.04 Aligned_cols=501 Identities=9% Similarity=-0.049 Sum_probs=295.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+...+..+|++ ...+..++..|.+.|++++|+..+++++.. +|+.......+ ...+++++|..+|++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH----------HHhccChhHHHHHHH
Confidence 55568999999 999999999999999999999999999999 66543332221 122999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHH-----HHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH
Q 004922 139 LNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (723)
+.+ ..|+... .+..+... ...+. +.++|.+.++ .......|........+.+.|.+.+++++|+..
T Consensus 134 l~~--~~P~n~~---~~~~la~~~~~~~~l~y~---q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 134 LLA--QQKACDA---VPTLRCRSEVGQNALRLA---QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHH--hCCCChh---HHHHHHHHhhccchhhhh---hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 998 4554431 21111111 01122 2233333333 222221122333334445666666666666665
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 004922 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
+..+ |.+......|..+|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 5543 2233334445555555 244 555555332 12235555556666666666666666655554332111
Q ss_pred -ccHHHHH------------------------------------------------------------------------
Q 004922 289 -LNIYVFN------------------------------------------------------------------------ 295 (723)
Q Consensus 289 -~~~~~~~------------------------------------------------------------------------ 295 (723)
|+..+|.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 1111110
Q ss_pred -----------------------HHHhhhcCChHHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCCh---HHHHHH-
Q 004922 296 -----------------------SLMNVNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGNT---VLAQEI- 346 (723)
Q Consensus 296 -----------------------~ll~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~---~~A~~~- 346 (723)
+.+....|+.++|.++|...... +...+......++..|.+.+.. .++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 01111123334444444444331 0122333344555666655442 222111
Q ss_pred ---------------------HHHHHhhhhcCCccc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 347 ---------------------YGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 347 ---------------------~~~~~~~~~~g~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
++.+... -+..++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1111111 010123 45566767666666 6777788877777655 355444434
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 444556788888888888877554 444445556666777888888888888776542
Q ss_pred hhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
.|+.......+.... ++.++|...+.+..+. .|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 233222222222222 6788999998888874 4667788888888999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 004922 561 SGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQ 638 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 638 (723)
.|++++|+..+++..+. .|+ ...++.+..++...|+.++|++.+++..+. .| +...+..+..++...|++++|.
T Consensus 622 lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 622 RHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998875 454 667777778888899999999999988873 45 6778888888888999977754
Q ss_pred HHHHHHHHHHHcC
Q 004922 639 QCLAVYQDMWKAG 651 (723)
Q Consensus 639 ~a~~~~~~m~~~g 651 (723)
. .+++..+..
T Consensus 698 ~---~l~~Al~l~ 707 (987)
T PRK09782 698 H---YARLVIDDI 707 (987)
T ss_pred H---HHHHHHhcC
Confidence 4 666666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-18 Score=178.99 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
.+.....+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 33345556778899999999999987532 356688888889999999999999998887653211110
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+...+..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.
T Consensus 106 -------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 106 -------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHH
Confidence 1123444555555566666666666655541 1234455555666666666666666
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 384 KVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
+.++.+...+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666665554433221 133445555556666666666666665542 223445555556666666666666666665
Q ss_pred h
Q 004922 460 T 460 (723)
Q Consensus 460 ~ 460 (723)
.
T Consensus 241 ~ 241 (389)
T PRK11788 241 E 241 (389)
T ss_pred H
Confidence 4
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-16 Score=174.73 Aligned_cols=433 Identities=11% Similarity=-0.022 Sum_probs=272.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+......+.+.|++++|+..|++++...++|. .+.++...|...|++++|++.++.+++ +.|+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~~-- 194 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAALE--LDPDYS-- 194 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCCH--
Confidence 3456778899999999999999999998844322 234556668899999999999999997 566432
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
..+......+...|++++|+..|..+.... +........++..+........+...+..-|.+...+..+...+
T Consensus 195 ----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 195 ----KALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 233333444555899999999887765543 11111111122211111122344444454455444444443333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-Cccc-HHHHHHHHhh--hcC
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g-~~~~-~~~~~~ll~~--~~~ 303 (723)
...+...+..-++...+ ..+. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.+ ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 22222222222222111 1111 1111111111 123478999999999988764 2233 2333333232 347
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
++++|+..|++..... +.+...|..+...+...|++++|...|+++... .+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887653 234557777888888889999999998888763 2345667888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..|++.+...+. +...+..+...+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|+......
T Consensus 420 ~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 420 KDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999888876533 56777778888888899999999998887752 4456778888888888888888888887765421
Q ss_pred cccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 004922 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~ 543 (723)
|+...
T Consensus 498 -------------------------------------------------p~~~~-------------------------- 502 (615)
T TIGR00990 498 -------------------------------------------------KETKP-------------------------- 502 (615)
T ss_pred -------------------------------------------------Ccccc--------------------------
Confidence 11000
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 544 LSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 544 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
...+. ..++..+..+...|++++|..++++..+. .|+ ...+..+...+.+.|++++|.++|++..+
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00000 01111222233457888888888887764 343 45677788888888888888888888765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-15 Score=169.12 Aligned_cols=559 Identities=11% Similarity=-0.033 Sum_probs=333.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-.....+...|++++|+..|+++++. +|+.... ...+...|.+.|++++|+..+++..+ ..|++..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 344444455556669999999999999999 7775332 24566779999999999999999998 5665432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHH--------HhcCCChHHHHHHhhhCCCC--
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (723)
....+. . .+++++|+.+++++.... |.+...+..++.. |.+.+....++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222222 1 388899999999999877 7777778777777 777777777777 5555444
Q ss_pred cc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 221 ~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
+. ....+...|.+.|++++|+.++.++.+.++ .+......+..+|.. .++ +++..+++. .++-+...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999754 356667777778887 466 888888553 2235677777777
Q ss_pred hhhc--CChHHHHHHHHHHHHcCCC-cChhhH------------------------------HHHHHHHHHcCChHHHHH
Q 004922 299 NVNA--HDLKFTLEVYKNMQKLGVM-ADMASY------------------------------NILLKACCLAGNTVLAQE 345 (723)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~g~~-~~~~~~------------------------------~~ll~~~~~~~~~~~A~~ 345 (723)
..+. |+.+.|.+++.++...-.. |...++ -.++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7543 7888888888776543211 222111 112344445555554444
Q ss_pred HHHHHHh-----hhhcCC------------------c-cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C-CCCCHH
Q 004922 346 IYGEVKH-----LEAKGV------------------L-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-G-VTPNTI 399 (723)
Q Consensus 346 ~~~~~~~-----~~~~g~------------------~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~ 399 (723)
+.+.-.. ....+. . +-+......+.-...+.|+.++|.++|+..... + -.++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 3210000 000000 0 112222222223344566777777777766542 1 112233
Q ss_pred HHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHhCCHH
Q 004922 400 TWSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFD 450 (723)
Q Consensus 400 ~~~~li~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~ 450 (723)
...-++..|.+.+. ...+..+ .+..... +. ++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33455555555443 2222111 1111110 11 22 34445555544444 5555
Q ss_pred HHHHHHHHhhhhhcccccCCcCCCchhhhhh-hhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--h
Q 004922 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (723)
Q Consensus 451 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~ 527 (723)
+|...+.+......... . ....... ...+... .....+.+.....|+...+..+...+. +
T Consensus 494 eAi~a~~~Al~~~Pd~~--~----~L~lA~al~~~Gr~e-----------eAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 494 VALYAWLQAEQRQPDAW--Q----HRAVAYQAYQVEDYA-----------TALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHhCCchH--H----HHHHHHHHHHCCCHH-----------HHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 56665544433221100 0 0000000 0000000 000000000011333333333333333 4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
+.++|...++...+.. +.+...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|.+.++
T Consensus 557 d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7889999999988764 223333334444555679999999999999874 6788889999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHhh
Q 004922 608 EMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCR 685 (723)
Q Consensus 608 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~ 685 (723)
+.... .| +...++.+..++...|+.++ |+..+++..+... -+...+..+-.++.. |++++|...+++.....
T Consensus 634 ~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 634 AALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99874 56 56677777778999999766 5557777777543 245667777777776 99999998877665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-18 Score=176.65 Aligned_cols=311 Identities=13% Similarity=0.096 Sum_probs=242.6
Q ss_pred cHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHH
Q 004922 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYS 367 (723)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~ 367 (723)
....+..+.....++++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.. .+...+ ....+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~ 111 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQRLLALQ 111 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHHHHHHHH
Confidence 333444555555677777888888887764 34567888899999999999999999998875 211111 135688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQAC 443 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~ 443 (723)
.+...|.+.|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88999999999999999999998764 346788999999999999999999999999886533321 2455677788
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
.+.|++++|...|+++.... +.+...+..+..
T Consensus 191 ~~~~~~~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~la~ 222 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD------------------------------------------------PQCVRASILLGD 222 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC------------------------------------------------cCCHHHHHHHHH
Confidence 89999999999999887532 223445556666
Q ss_pred HHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004922 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (723)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 601 (723)
.+. ++.++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHH
Confidence 665 478999999999997643333567889999999999999999999999885 5777777889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~ 657 (723)
|.++++++.+. .|+..+++.++..+...+...+..+++.++++|.+.+++|++.
T Consensus 301 A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 301 AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999874 7999999999988875332122444778999999988888766
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-15 Score=155.82 Aligned_cols=566 Identities=13% Similarity=0.048 Sum_probs=358.5
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH-HHhhHHHHHhHHHhhhccCccchHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA-SMLSLEMVASGIVKSIREGRIDCVVGVL 136 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 136 (723)
.|...++..|++ ...+-.-+...-..|+|..|+.+|..++...+ ..-. ..+..+.+ +++.|+.+.|+..|
T Consensus 152 ~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp--~~~aD~rIgig~C------f~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 152 QFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINP--ACKADVRIGIGHC------FWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCc--ccCCCccchhhhH------HHhccchhhHHHHH
Confidence 354557778888 66666666666778999999999999887742 2211 11122222 67899999999999
Q ss_pred HHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh
Q 004922 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (723)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (723)
.++++ +.|... ..+-.|.-.-...-+...+..++..+.+.-. ..+.++...+.|..-+-..+++..+..+...
T Consensus 223 ~ralq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 223 ERALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 99997 666332 1221221111122234555667776666544 3377888888888888889999888887665
Q ss_pred CCC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 217 VPR-------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 217 ~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
+-. -...|+.+..+|-..|++++|...|-+..+....--+..+.-+.+.|.+.|+++.+...|+.+.+. .|
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p 373 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LP 373 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Cc
Confidence 421 125578888999999999999999988776432111445667788899999999999999988876 34
Q ss_pred cHHH-HHHHHhhhcC------ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh-hhhcCCccc
Q 004922 290 NIYV-FNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKL 361 (723)
Q Consensus 290 ~~~~-~~~ll~~~~~------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~g~~~~ 361 (723)
|..- ...+-..|++ ..+.|..++....+.- +.|...|-.+...+....-+ .++..|..+.. +...+ -.+
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~-~~i 450 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG-KQI 450 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC-CCC
Confidence 4433 3333333433 2355666666665543 45666776666665554443 34777766653 33344 346
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (723)
.....|.+...+...|+++.|...|...... ...+|. .+-..+...+...++++.|.+++..+.+. .|+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~ 528 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPG 528 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cch
Confidence 7778888888888999999999988887654 122232 23445666777788888999999888876 344
Q ss_pred HH-HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 433 SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 433 ~~-~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
-. .|--+.......+...+|..+++..............+.|... +. ...+. .....+......-..
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~----l~---k~~~~-----~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH----LK---KSEWK-----PAKKKFETILKKTST 596 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH----Hh---hhhhc-----ccccHHHHHHhhhcc
Confidence 33 2333332223346677787777776643322111100000000 00 00000 000001111111122
Q ss_pred CcCHHHHHHHHHHHhh--------------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004922 512 KPTTTTYNILMKACCT--------------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~--------------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (723)
.+|.++.-+|-..|.. ..++|.++|.++.+... -|.+.-|-+.-.++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3566665555443321 35789999999988643 37777788888999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 004922 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~ 656 (723)
.. -...+|-.+..+|...|++..|+++|+... ...-.-+....+.|-+++.+.|.+.++.++ +-.....-+.-..
T Consensus 676 ~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~---ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 676 TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA---LLKARHLAPSNTS 751 (1018)
T ss_pred Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHhCCccch
Confidence 43 245678889999999999999999999765 445556899999999999999998776553 3233333333334
Q ss_pred HHHHHHH
Q 004922 657 TYLKELI 663 (723)
Q Consensus 657 ~~~~~li 663 (723)
..||..+
T Consensus 752 v~FN~a~ 758 (1018)
T KOG2002|consen 752 VKFNLAL 758 (1018)
T ss_pred HHhHHHH
Confidence 4455443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-16 Score=168.53 Aligned_cols=419 Identities=11% Similarity=-0.014 Sum_probs=227.3
Q ss_pred HHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
....+...|++++|+..|+++++ +.|+.. . +.+.+..+...|++++|++.++..++.. |+....+..++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~----~---~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIE--CKPDPV----Y---YSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCchH----H---HHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 34447789999999999999887 556432 2 3333334455799999999999988755 77777777777
Q ss_pred HHHhcCCChHHHHHHhhhC---CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 199 QLCVNKPDVNLAIRYACIV---PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (723)
.++...|++++|+..+..+ +.. ......++..+.. ..+........+... ++...+..+...+ ...+...
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCc
Confidence 7777777777777655432 111 1111111111111 112222222222111 1111222222211 1111111
Q ss_pred HHHHHHHHHhCCCccc-----HHHHHHHHhh-hcCChHHHHHHHHHHHHcC-C-CcChhhHHHHHHHHHHcCChHHHHHH
Q 004922 275 SRAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-V-MADMASYNILLKACCLAGNTVLAQEI 346 (723)
Q Consensus 275 a~~~~~~m~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~~~~~~A~~~ 346 (723)
...-+....+. .++ .......+.. ..+++++|.+.|+.....+ . +.+...++.+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111100 010 0000000011 1135556666666655543 1 12233455555555566666666666
Q ss_pred HHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 347 YGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 347 ~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
|++... ..|+ ...|..+...+...|++++|...|++.++.... +..+|..+...+...|++++|...|++..
T Consensus 354 ~~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 354 LSKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666554 2233 335555555566666666666666665554322 34555555556666666666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (723)
+.. +.+...+..+..++.+.|++++|...|+.
T Consensus 427 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~----------------------------------------------- 458 (615)
T TIGR00990 427 DLD-PDFIFSHIQLGVTQYKEGSIASSMATFRR----------------------------------------------- 458 (615)
T ss_pred HcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------------------------
Confidence 542 22344444555555555555555555544
Q ss_pred ccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--
Q 004922 506 DKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-- 583 (723)
Q Consensus 506 ~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 583 (723)
..+. .+.+...++.+...+...|++++|+..|++..+..-..+.
T Consensus 459 ---------------------------------al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 459 ---------------------------------CKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred ---------------------------------HHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 3332 1234667888888999999999999999998874211111
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 004922 584 ----VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (723)
Q Consensus 584 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~ 650 (723)
..++..+..+...|++++|.+++++.... .| +...+..+...+.+.|++++| +..|++..+.
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eA---i~~~e~A~~l 571 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEA---LKLFERAAEL 571 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHH---HHHHHHHHHH
Confidence 11222233344579999999999998874 45 455788899999999997774 5577776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-15 Score=166.41 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=216.6
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
+...|++++|+.+++..+... |+....+..++.+....|++++|...++.+ |.+..++..+...+...|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 344799999999988888765 777777888888888888999888887774 77778888889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCC
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~ 320 (723)
...|++..+.. +.+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.....
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999988742 23567788888889999999999999988876543322222222222344788888888888776543
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH----HHHHHHHHHHCCCCC
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTP 396 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~~~~p 396 (723)
.++...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++ |...|++.....+.
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 334445555567788888999998888888763 23355677778888888888875 78888888876543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+.+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778888888888899999998888888763 33556677777888888888888888877654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-16 Score=170.70 Aligned_cols=330 Identities=13% Similarity=0.031 Sum_probs=247.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-....+..+.+.|++++|+.+++..+.. .|.....+ ..++......|++++|++.|+++.+ ..|+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l------~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~- 110 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLL------RRWVISPLASSQPDAVLQVVNKLLA--VNVCQP- 110 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHH------HHHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh-
Confidence 344556778888899999999999999999 55543332 3334446789999999999999997 567543
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
..+..+.. .+...|++++|+..++++++.. |++...+..++..+...|++++|...++.+ |.+...+..
T Consensus 111 --~a~~~la~---~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 111 --EDVLLVAS---VLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred --HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 23333333 3445899999999999998865 888888999999999999999999887653 555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~ 304 (723)
+. .+...|++++|...++.+.+....++...+..+...+...|++++|+..|+++.+... .+...+..+-.. ..|+
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 43 4788899999999999987754334455556667788899999999999999987642 234444444333 3466
Q ss_pred hHH----HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 305 LKF----TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 305 ~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+++ |...|++..... +.+...+..+...+...|++++|...+++.... .+.+...+..+..++.+.|+++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 664 788999888764 446778888899999999999999999998873 2234456777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+|.+.|+.+...++. +...+..+..++...|+.++|...|++..+.
T Consensus 336 eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999998876432 2233444567788999999999999998876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-14 Score=132.03 Aligned_cols=439 Identities=14% Similarity=0.171 Sum_probs=288.8
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHH-HHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFV-GLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
+..+|.++++.-+|++|.+.|...+..... .|....+ +.+..++--|. +.|-.|...|... ...|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~----~L~~LV~-~~Ns~~~~~~E~~~Fv~~~~~~E~S--~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQL----ELFRLVT-YYNSSNVPFAEWEEFVGMRNFGEDS--TSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHH----HHHHHHH-hhcCCCCcchhHHHHhhcccccccc--cccc-------
Confidence 457899999999999999987665544222 2222222 22233333222 2344444444322 2222
Q ss_pred hcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
+.| +.|.-+++..|..+.++..+|.++|+-...+.|..+|.+......+.+..++|.+|.+-+-... .+++.+
T Consensus 191 -K~G--~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 191 -KSG--AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred -ccc--cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 233 3455778889999999999999999999999999999998887777899999999987544433 689999
Q ss_pred HHhCCCcccHHHHHHHHhhhc--CCh----HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH-HHHHHHHHH-hh
Q 004922 282 LRSQNVTLNIYVFNSLMNVNA--HDL----KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (723)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~--~~~----~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~-~~ 353 (723)
|....+.||..|+|+++.+.+ |++ ..|.+++.+|++.|++|...+|..+|..+++.++..+ |..+...+. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999855 544 4468999999999999999999999999999988755 333333332 22
Q ss_pred hhcC---CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 354 EAKG---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 354 ~~~g---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
.++. ..+.|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...++.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122345567788888889999999998877665321 2333 23467788888999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcc
Q 004922 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503 (723)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (723)
|.-.-+-|+..+...++.+..-.|.++-.-+++..+...+..... +...++..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~--------~l~eeil~------------------- 476 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS--------DLREEILM------------------- 476 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH--------HHHHHHHH-------------------
Confidence 998888899999999999999999999888888887765531100 00000000
Q ss_pred ccccccCC---CcCHHHHHHHHHHHhhcHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 004922 504 SFDKRFSF---KPTTTTYNILMKACCTDYYRVK-ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG- 578 (723)
Q Consensus 504 ~~~~~~~~---~p~~~~~~~ll~~~~~~~~~a~-~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 578 (723)
.+-.... .|...-+.....-|+-++.++. .--.+|.+..++ ....+...-.+.+.|..++|.++|..+.+.+
T Consensus 477 -~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 477 -LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred -HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 0000011 2222234444443443333222 223344443333 3444555556677777777777777775432
Q ss_pred CCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 579 MSPDVVAYT---TAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 579 ~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
--|-....| -+++.-.+..+...|...++-|...
T Consensus 554 ~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 554 KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 223333333 4445555666777777777777543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-13 Score=138.95 Aligned_cols=552 Identities=13% Similarity=0.109 Sum_probs=368.6
Q ss_pred ChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHh
Q 004922 86 RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL 165 (723)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~ 165 (723)
+++.|.+.|...+.. .|.....++....+ ....|+|-.|+.+|..++.. .|.-..+.. +.+. ...
T Consensus 145 ~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i------~ynkkdY~~al~yyk~al~i--np~~~aD~r---Igig--~Cf 209 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQ--SPDNILALLGKARI------AYNKKDYRGALKYYKKALRI--NPACKADVR---IGIG--HCF 209 (1018)
T ss_pred cHHHHHHHHHHHHhh--CCcchHHHHHHHHH------HhccccHHHHHHHHHHHHhc--CcccCCCcc---chhh--hHH
Confidence 369999999999998 67766555554443 56889999999999998863 443222211 1222 234
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCC---hHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD---VNLAIRYACI----VPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
++.|+.+.|+..|.++++.. |..+..+..|+-.-....+ +..+...+.. -+.++.+.+.|...|...|++.
T Consensus 210 ~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 45899999999999999866 7777666666655444443 3455554433 3788899999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH--H--HhhhcCChHHHHHHH
Q 004922 239 SALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS--L--MNVNAHDLKFTLEVY 312 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--l--l~~~~~~~~~a~~~~ 312 (723)
.+..+...+...-.. .-...|..+.++|-..|++++|...|.+..+. .+|.+++.. + +..+.|+++.+...|
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHH
Confidence 999999998874321 12456889999999999999999999888765 344433332 2 334568999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcC----ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAG----NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+.+.+.. +-+..+...|...|...+ ..+.|..++.+.... .+.|...|-.+...+-...-+.. +.+|..
T Consensus 366 Ekv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-----~~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 366 EKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-----TPVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 9998764 445667777777777664 456777777777652 35577788888777766555444 666655
Q ss_pred HH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHhCCHHHHHHH
Q 004922 389 ML----SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNS------QCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 389 m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.. ..+-.+.....|.+.......|.+..|...|...... ...++. .+--.+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 4455577888999999999999999999999988765 122333 2233344556667899999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhh--ccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHK--DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~ 533 (723)
|..+....+. -++....+... ...+. ......+...+..-...|+..++-.-++.--+....|.
T Consensus 519 Yk~Ilkehp~---------YId~ylRl~~ma~~k~~~-----~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 519 YKSILKEHPG---------YIDAYLRLGCMARDKNNL-----YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHHHHHHCch---------hHHHHHHhhHHHHhccCc-----HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 9988865431 11111000000 00000 00000111112222234554444322222122344555
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004922 534 ALMNEMRTV-GLSPNHISWTILIDACGG------------SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600 (723)
Q Consensus 534 ~l~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 600 (723)
+-|..+.+. ...+|.++.-+|...|.. .+..++|+++|.+.+... +.|...-|-+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 544444432 123577766666665532 235678889998888753 236777888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-hhhhhhhccc
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK-AGYKANDTYLKELIEEWCE-GVIQDKNQNQ 678 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~-g~~~~a~~~~ 678 (723)
+|..+|.+..+.. .-+..+|--+.+.|.-.|++.. |+++|+...+ .+..-+..+.+.|-++|.+ |...++.+.+
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~---AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL---AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999998754 3456778888999999998665 5668877765 5556678899999999998 8888888766
Q ss_pred ccch
Q 004922 679 GEVT 682 (723)
Q Consensus 679 ~~~~ 682 (723)
....
T Consensus 740 l~a~ 743 (1018)
T KOG2002|consen 740 LKAR 743 (1018)
T ss_pred HHHH
Confidence 5333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-14 Score=161.14 Aligned_cols=417 Identities=13% Similarity=0.038 Sum_probs=227.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
.....-.+.+..-.|+.++|+.++.++... .|.. ...+..+...+...|++++|.+.|+++++ ..|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 444445566677788888888888888764 2221 12223445557788888888888888886 345432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
... ......+...|++++|+..++++++.. |++.. +..++.++...|++++|+..++.+ |.+..++..
T Consensus 84 --~a~---~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 --DYQ---RGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred --HHH---HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 111 222233445788888888888887754 55555 555566666666666665555442 444445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
+...+...+..+.|+..++.... .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555555555555554432 1210 000011111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHc-CCCcChh-hH----HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHH
Q 004922 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (723)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~ 371 (723)
..+++ +.|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.. .+...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~---~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA---EGQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cCCCCCHH-HHHHHHH
Confidence 00112 4455555555532 1112211 11 1112344556777777777777765 12111221 1122355
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAG-----------CEPN---SQ 434 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~---~~ 434 (723)
.|...|++++|+.+|+++....... .......+..++.+.|++++|...++.+.... -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6777777777777777776543221 12345555566677777777777777776542 1123 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
.+..+...+...|+.++|.++++++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------------------------------------------- 389 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA--------------------------------------------------- 389 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 45566667778888888888888876431
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004922 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVC 593 (723)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 593 (723)
+.+...+..+...+...|++++|++.+++..+. .|+ ...+-.....+
T Consensus 390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 123344555566666666677777777666653 344 34444555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
...|++++|.++++++.+ ..|+......+=+
T Consensus 438 l~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 666677777777766665 2454444333333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-14 Score=159.51 Aligned_cols=380 Identities=11% Similarity=-0.053 Sum_probs=277.5
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 63 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
.+.+|.+ ...+..++..+...|++++|+.++++++.. +|...... ..++..+...|++++|+..++++.+.
T Consensus 42 ~~~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 42 RVHMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ------RGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3346666 677999999999999999999999999998 55543332 23444578999999999999999974
Q ss_pred CCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcc
Q 004922 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (723)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (723)
.|+.. . +..+..+ +...|++++|+..++++++.. |++...+..++.++...+..+.|++.++.++..+.
T Consensus 113 --~P~~~---~-~~~la~~---l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 113 --APDKA---N-LLALAYV---YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred --CCCCH---H-HHHHHHH---HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 66543 2 3333333 334899999999999999866 88888888889999999999999999988765321
Q ss_pred --------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCCHH-H----HHHHHHHHHhcCCHHHHHHHHH
Q 004922 223 --------LFCNFVREFG-----KKRDL---VSALRAYDASKKH-LSSPNMY-I----CRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 223 --------~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
....++..+. ..+++ ++|+..++.+.+. ...|+.. . ....+.++...|++++|+..|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1222333332 22234 7788899888854 1223221 1 1111334567799999999999
Q ss_pred HHHhCCCc-cc-HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 281 DLRSQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 281 ~m~~~g~~-~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
.+.+.+.. |+ ...+...+....+++++|+..|+++....... .......+..++...|++++|...++.+.....
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 99988632 33 44445555566799999999999987653111 124456677788999999999999999886210
Q ss_pred c-----C--Ccccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 356 K-----G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 356 ~-----g--~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
. + .-.|+ ...+..+...+...|++++|+++++++....+. +...+..+...+...|++++|++.+++..
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 0 00122 234566778889999999999999999887544 67889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
... +-+...+......+.+.|++++|..+++.+.+...
T Consensus 421 ~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 421 VLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred hhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 863 33456666777788899999999999999886543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-13 Score=148.26 Aligned_cols=469 Identities=10% Similarity=0.013 Sum_probs=302.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+.....-+-...++|+++.|+..|+++++. .|.....+. .++..+...|+.++|+..+++... |+..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~~----p~n~- 100 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQS----SMNI- 100 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhcc----CCCC-
Confidence 333444455677889999999999999998 555321111 333446677999999999999883 2222
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC-CCc--chHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RAD--ILFCNF 227 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~l 227 (723)
....+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.+..+. .++ ..+..+
T Consensus 101 ---~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 101 ---SSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 12222222333444899999999999999866 7777777777888888888888888877752 222 222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (723)
+..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-. +.++-...... +.+.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l---~~~~ 245 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL---ERDA 245 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---HHHH
Confidence 333334556656888888888753 2356677777788888888888877666532 22211111110 0011
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH----HHHHHHHHHHccCCHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----TYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~----~~~~ll~~~~~~g~~~~a~ 383 (723)
+ -++++.+..++..- . . +---.+.|+.-++.+.... +..++... ...-.+-++...|++.+++
T Consensus 246 ~----a~~vr~a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 246 A----AEQVRMAVLPTRSE-T---E---RFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred H----HHHHhhcccccccc-h---h---hHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1 11121111111100 0 0 0012234444455544321 11222222 2234466788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+.|+.+...+.+....+-.++.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999998876566788899999999999999999999997753 123444467889999999999999999999
Q ss_pred hhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHH---HHHHHHHhhcHHHHHHH
Q 004922 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY---NILMKACCTDYYRVKAL 535 (723)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~a~~l 535 (723)
+..... .....+.+ +. ..-.||-..+ .+...++.++..+|++.
T Consensus 393 ~~~~~p--~~~~~~~~-------------------~~-------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 393 YSEQTP--YQVGVYGL-------------------PG-------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHhcCC--cEEeccCC-------------------CC-------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876321 00000000 00 0013443333 33344566789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004922 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (723)
Q Consensus 536 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (723)
++.+.... +-|......+.+.+...|++.+|+.+++..... .|+ ..+....+.++...|++.+|..+.+.... .
T Consensus 439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~ 513 (822)
T PRK14574 439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--R 513 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 99997753 347788888999999999999999999777664 554 55666777888888999999999988876 3
Q ss_pred CCCHH
Q 004922 615 QPNLV 619 (723)
Q Consensus 615 ~p~~~ 619 (723)
.|+..
T Consensus 514 ~Pe~~ 518 (822)
T PRK14574 514 SPEDI 518 (822)
T ss_pred CCCch
Confidence 56555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-13 Score=145.26 Aligned_cols=425 Identities=11% Similarity=0.042 Sum_probs=306.5
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC--CCcchHHHH--HHHHHhcCCHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCNF--VREFGKKRDLVSAL 241 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~l--~~~~~~~~~~~~A~ 241 (723)
.+.|+++.|+..|++.++.. |........++..+...|+.++|+.+++++- .+...+..+ +..|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999998866 6654333378888888999999999998863 233333334 66888999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g 319 (723)
++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999998643 35677778888999999999999999999877 45555554444444 245555999999999885
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH--HHHHHHHH---------ccCC---HHHHHHH
Q 004922 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFA---------DAKW---WQMALKV 385 (723)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~--~~ll~~~~---------~~g~---~~~a~~~ 385 (723)
+.+...+..++.++.+.|-...|.++..+-+.+ +.+....+ ...+.-.+ ...+ .+.|+.-
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 456778888999999999999999887765432 22221111 01111111 1223 3445555
Q ss_pred HHHHHHC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 386 KEDMLSA-GVTPNTI-----TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 386 ~~~m~~~-~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
++.+... +..|... ...-.+-++...|++.++++.++.|...+.+....+-..+.++|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6665542 2223321 223456678899999999999999999887767778999999999999999999999988
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMN 537 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~ 537 (723)
....... ....++......|..++. .++++|..+++
T Consensus 354 ~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 354 YYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred hhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6532100 001334444567777876 47899999999
Q ss_pred HHHHcCC-----------CCCH--H-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004922 538 EMRTVGL-----------SPNH--I-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 538 ~m~~~~~-----------~p~~--~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (723)
.+.+.-. .|+. . .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987421 1221 1 34456677889999999999999998753 337888889999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 604 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
+.++.... +.| +..+......++...|+++++++ +.+.+..
T Consensus 471 ~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~---~~~~l~~ 512 (822)
T PRK14574 471 QELKAVES--LAPRSLILERAQAETAMALQEWHQMEL---LTDDVIS 512 (822)
T ss_pred HHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHH---HHHHHHh
Confidence 99987765 356 56677777888888888877665 5545544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-14 Score=132.01 Aligned_cols=464 Identities=14% Similarity=0.099 Sum_probs=272.1
Q ss_pred cccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC-
Q 004922 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA- 220 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~- 220 (723)
|.....-.++++|.+++..+.-.....+|+..++-+++....|+.-..-..++..+.+.+.+..|+++++.. |.-
T Consensus 192 ~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 192 PEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred hhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 333334457788888777777788999999999999999988888887788899999999999999998874 331
Q ss_pred ----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 004922 221 ----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--------- 287 (723)
Q Consensus 221 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--------- 287 (723)
....+++.-.+.+.|++++|+..|+...+. .||..+-..|+-++..-|+.++..+.|..|.....
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 145666777788999999999999998874 58877766667677788999999999999986532
Q ss_pred ---cccHHHHHHHHhh-----hc-C---ChHHHHHHHHHHHHcCCCcChh-------------hH--------HHHHHHH
Q 004922 288 ---TLNIYVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMA-------------SY--------NILLKAC 334 (723)
Q Consensus 288 ---~~~~~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~ll~~~ 334 (723)
.|+....+..+.. .. . +.+.++-.--.++.--+.|+-. .+ -.-...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2344444444332 11 1 1111111111111111222210 00 0112457
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS-TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
.+.|+++.|.+++..+.+.. . -..+...-| .++..+-...++..|..+-+..+..+- -+....+.-.+.....|+
T Consensus 430 lk~~d~~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGD 505 (840)
T ss_pred HhccCHHHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCc
Confidence 89999999999998877521 1 011111111 122222223345555555555443221 122222222233334556
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCC
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (723)
+++|.+.+++.+...-......||+=+ .+...|++++|++.|-++...-.. ...........+..++..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n--n~evl~qianiye~led~-------- 574 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN--NAEVLVQIANIYELLEDP-------- 574 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhCH--------
Confidence 666666665555443222222333322 234455555555555443211000 000000000000000000
Q ss_pred CCCcCCCCccccccccCC-CcCHHHHHHHHHHHhhcH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004922 494 PNFVPNSHYSSFDKRFSF-KPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (723)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (723)
...+...++...+ +.|+..++-+...|-+.+ .+|.+.+-+--+. ++-+..|...|...|....-+++|+.+
T Consensus 575 -----aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 575 -----AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred -----HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 0001111222223 445677777777776544 3444443333222 445777888888888888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004922 571 LKIMREDGMSPDVVAYTTAIKVCV-RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (723)
Q Consensus 571 ~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 635 (723)
|++..- +.|+..-|..||..|. +.|++.+|+.+|+...+. +.-|...+..|++.|...|-.+
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 988764 5899999998886554 579999999999988764 6678899999999988877543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-11 Score=128.26 Aligned_cols=366 Identities=13% Similarity=0.095 Sum_probs=265.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
..-..+..+...|++++|..++...+.. +|..+...-.+ ...|-.+|+.+++...+-.+- .+.|...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL------~~IyEqrGd~eK~l~~~llAA--HL~p~d~--- 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTL------GEIYEQRGDIEKALNFWLLAA--HLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHH------HHHHHHcccHHHHHHHHHHHH--hcCCCCh---
Confidence 3344455666679999999999999999 66655443344 444899999999877654433 4677543
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCc-----ch
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (723)
......+....+.|++++|.-+|.++++.. |++......-...|.+.|+...|...|..+ |+.. ..
T Consensus 208 ---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 208 ---ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 333333334455899999999999999877 888888888899999999999998876663 4322 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-------------
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL------------- 289 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~------------- 289 (723)
-...++.+...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2335677888888899999998877632 22456678899999999999999999988887722222
Q ss_pred --------------cHHHHHHHHhh-hcCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 290 --------------NIYVFNSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 290 --------------~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+...+...+.. ..+..+...-+...+.... ..-+...|.-+..+|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 22222222221 1134444555555555555 334567788899999999999999999999986
Q ss_pred hhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004922 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML------- 425 (723)
Q Consensus 353 ~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~------- 425 (723)
.. ..-+...|-.+..+|...|.+++|.+.|+..+...+. +...-..|-..+.+.|+.++|.+++..+.
T Consensus 443 ~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 443 RE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred Cc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 21 2335778999999999999999999999999986432 45556677778899999999999999854
Q ss_pred -HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 426 -QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 426 -~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..+..|+........+.+.+.|+.++-.+.-..|..
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334566677777777888899998886666555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-12 Score=123.13 Aligned_cols=406 Identities=13% Similarity=0.127 Sum_probs=275.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHH-HHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYM-KSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
.+-++|+.. ...|.+.++.-+|+.|...|...+...-..|... |-...++. .-++-|-.|...|- ....+|.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK--- 191 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc---
Confidence 455566654 4568899999999999999887776665555543 22222222 11233444443331 1112221
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
+.+-|. ++-+.. +.+..+|.++|.++|+--..+.|.+++++.... + .+.+..+||.+|.+-.-.
T Consensus 192 -----~G~vAd-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k--~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 192 -----SGAVAD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAA--K--GKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -----cccHHH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--h--heeeHHhhhhhhhHHHhh--
Confidence 112233 333332 668899999999999999999999999988762 2 467889999998764432
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH-HH
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ----AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR-AF 453 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~ 453 (723)
...+++.+|....+.||..|||+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 337899999999999999999999999999998775 56788999999999999999999999998887755 34
Q ss_pred HHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCC-cCHHHHHHHHHHHhh--cHH
Q 004922 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-PTTTTYNILMKACCT--DYY 530 (723)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~--~~~ 530 (723)
.++.++...-. ++.. ..+. .|...|...|..|.+ +.+
T Consensus 334 ~~i~dI~N~lt-------------------GK~f---------------------kp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 334 SWINDIQNSLT-------------------GKTF---------------------KPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHhhc-------------------cCcc---------------------cCCCCchhHHHHHHHHHHHHhhhHH
Confidence 44444332110 0000 0122 345566777777653 666
Q ss_pred HHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004922 531 RVKALMNEMRTV----GLSPNH---ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 531 ~a~~l~~~m~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (723)
-|.++..-.... -+.|+. .-|.-+....|.....+.-...++.|.-.-.-|+..+...++.+..-.|.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 777765544421 123332 2456677778888889999999999987777789999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--H-H-------HHHHHHH-------HHHHHHcCCCCCHHHHHHHHHH
Q 004922 604 SLFEEMKHYQIQPNLVTYITLLRARSRYG-SL--H-E-------VQQCLAV-------YQDMWKAGYKANDTYLKELIEE 665 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~--~-~-------a~~a~~~-------~~~m~~~g~~p~~~~~~~li~~ 665 (723)
++|..|+..|..-+...-.-++..+++.. ++ - . ++-|..+ -.+|.+... .....+.+.--
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~L 531 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAIL 531 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHH
Confidence 99999998887766666666666666655 22 1 0 0111111 122333333 45566777777
Q ss_pred HHh-hhhhhhhcccccchHhhhcccCCh
Q 004922 666 WCE-GVIQDKNQNQGEVTLCRRTNSQRP 692 (723)
Q Consensus 666 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 692 (723)
+.+ |..++|.++++-+.....+.+..+
T Consensus 532 l~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 532 LLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred HHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 888 999999999987765555555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-10 Score=121.34 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=221.8
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK 234 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~ 234 (723)
+..+..+.-.|+.++|..++.++++.. |.....|..|+..|.++|+.+++....-. -|.+...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 333333333599999999999999877 88999999999999999999999886443 377889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc------CChHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFT 308 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~------~~~~~a 308 (723)
|++++|.-.|.+..+..+ ++...+-.-+..|-+.|+...|.+.|.++.....+.|..-+..++.... ++.+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998643 4666666677789999999999999999998754444444444444321 344777
Q ss_pred HHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh----------------------hcC-CccccHH
Q 004922 309 LEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AKG-VLKLDVF 364 (723)
Q Consensus 309 ~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----------------------~~g-~~~~~~~ 364 (723)
.+.++..... +-..+...++.++..+.+...++.|......+.... ..| .+.++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 7777776652 234566788899999999999999988877776510 000 0222222
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
. -.++-++.+.+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 3 233344555555555555555565555 3334567888888999999999999999998887555667788888888
Q ss_pred HHHhCCHHHHHHHHHHhhh
Q 004922 443 CVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~ 461 (723)
|...|..+.|.+.|+.+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 9899999999998888765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-11 Score=116.49 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHH
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (723)
...+..|+..|+-+++.-+.... -.....++++...+.+.|+|++|+..|+...+ ..|+.. ..+++.+-+++
T Consensus 250 kr~fskaikfyrmaldqvpsink---~~rikil~nigvtfiq~gqy~dainsfdh~m~--~~pn~~---a~~nl~i~~f~ 321 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINK---DMRIKILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFI---AALNLIICAFA 321 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccch---hhHHHHHhhcCeeEEecccchhhHhhHHHHHH--hCccHH---hhhhhhhhhee
Confidence 33444555555544444221111 11244556777777888888888888887776 355432 23344333222
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCC
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPV 188 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~ 188 (723)
-|+.+...+.|.+|+.....+
T Consensus 322 ----i~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 322 ----IGDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred ----cCcHHHHHHHHHHHhcCCCCC
Confidence 477777777777777654333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-09 Score=99.81 Aligned_cols=419 Identities=11% Similarity=0.094 Sum_probs=299.0
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
-.+++++..|..+|++++... ..+...|..-+..-.+...+..|..+++. +|.-+..|...+.+=...|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 344788999999999998755 56777788888888888889999988877 477788888888888889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHc
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (723)
.++|+.-.+ ..|+..+|++.|+.=.+.+.++.|..+|+..+-. .|++.+|--.... ..|....+..+|....+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999876 5799999999999999999999999999998865 5888888777665 447888899999887664
Q ss_pred -CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccCCHHHHHHH--------H
Q 004922 319 -GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKV--------K 386 (723)
Q Consensus 319 -g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~ 386 (723)
|- ..+...+.+....=.++..++.|.-+|+..... ++.+ ...|..+...=-+.|+.....+. |
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 21 112233444434444677888999999888763 2222 33455544444445554333322 3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HHhCCHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLF 456 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll-----~~~---~~~g~~~~a~~l~ 456 (723)
+.++..++ -|-.+|--.++.-...|+.+...++|++.... ++|-.. .|.-.| -+| ....+.+.+.++|
T Consensus 312 E~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44554443 36678888888888899999999999999876 344221 122111 122 2467888888888
Q ss_pred HHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh------cHH
Q 004922 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT------DYY 530 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~------~~~ 530 (723)
+...+. ++....||.-+--.|+. ++.
T Consensus 390 q~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 390 QACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccH
Confidence 877652 34556666665555542 577
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
.|.+++...+ |..|-..+|-..|..=.+.+++|.+.+++++.++.+. -|-.+|.-....=-..|+.+.|..+|.-.+
T Consensus 422 ~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8888877665 4568888888888888888899999999999888542 255677666666667889999999998887
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 004922 611 HYQ-IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (723)
Q Consensus 611 ~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~ 650 (723)
+.. +......|.+.|.-=...|..+.+ ..+++++++.
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~eka---R~LYerlL~r 536 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKA---RALYERLLDR 536 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHH---HHHHHHHHHh
Confidence 532 334566677777776677765554 4477777764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-08 Score=99.25 Aligned_cols=396 Identities=12% Similarity=0.075 Sum_probs=233.3
Q ss_pred HHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004922 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (723)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (723)
..++++.++.- |+++..|-. .....+.+.|.-++.++..--.....|..+|.+..-|+.|.++++...+. ++-
T Consensus 366 ~RVlRKALe~i--P~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC
Confidence 34455555433 555444432 22334444455444443221122333455666777788888888887764 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCc--Chhh
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA--DMAS 326 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~--~~~~ 326 (723)
+...|.+-...--.+|+.+.+..++++- ...|+..+..-|-.=-..+ +|..-.+..+....+..|+.- -..|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 6666766666666778888777777653 3457666666654443332 256666777777777666543 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (723)
|+.-...|.+.+.++-|..+|....+. .+-+...|......=-..|..++...+|++....-++ ....|-....
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ak 592 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAK 592 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHH
Confidence 777777788888888888888877763 3445566777766666677888888888888766433 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhc
Q 004922 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (723)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (723)
.+...|++..|..++....+.. +.+..+|-..+..-..+..++.|..+|.+....
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~------------------------ 647 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI------------------------ 647 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------------------------
Confidence 7777788888888888877764 336667777777777888888888888766542
Q ss_pred cccccCCCCCcCCCCccccccccCCCcCHHHH--HHHHHHHhhcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC
Q 004922 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY--NILMKACCTDYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGN 563 (723)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 563 (723)
.|+...| ++-+.-|..+.++|.+++++..+. -|+ ...|-.+...+-..++
T Consensus 648 -------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 648 -------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred -------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 3333333 222333444556666666555553 222 2345555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004922 564 VEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 638 (723)
++.|...|..=.+. -|+ +..|-.+.+.=-+.|.+-+|..++++..-.+ .-|...|-..|+.=.|.|+.+.|+
T Consensus 701 ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 55555555443332 232 3344444444444555556666665554322 224555555555555666555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-08 Score=100.95 Aligned_cols=486 Identities=13% Similarity=0.043 Sum_probs=289.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
.-.+++..|.+ +..|-..+.. ..+...-..+++++++. .|+....+-. .......++|.-++.+
T Consensus 338 vA~Avr~~P~S-v~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKa----------AVelE~~~darilL~r 401 (913)
T KOG0495|consen 338 VANAVRFLPTS-VRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKA----------AVELEEPEDARILLER 401 (913)
T ss_pred HHHHHHhCCCC-hhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHH----------HHhccChHHHHHHHHH
Confidence 44456667777 5554433322 12334445666777777 6665443222 2344556667777777
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+ .-|. . +..+.++.+..-|+.|..+++++.+.= |.+...|....+.-...|+.+...++.+..
T Consensus 402 Ave--ccp~------s----~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 402 AVE--CCPQ------S----MDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHH--hccc------h----HHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 776 3441 2 222333444677788888888776633 667777777777777777777777665552
Q ss_pred --------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 218 --------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 218 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
.-+...|..=...+-+.|..--+..+......-|+.- -..+|+.-...|.+.+.++-|..+|....+.-
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf- 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF- 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-
Confidence 1233455555666666777777777777766666543 24567777777777777777777777766541
Q ss_pred cccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 288 ~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
+-+...|...... .-|..+.-..+|++....- +.....|-.....+-..|+...|..++..+-+. .+.+...
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-----~pnseei 620 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-----NPNSEEI 620 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CCCcHHH
Confidence 2334445444433 2256666667777766542 334445555556666777777777777777652 2234556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACV 444 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 444 (723)
|.+-+.....+..++.|..+|.+.... .|+...|.--+....-.++.++|.+++++.++. -|+ ...|-.+-+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 777777777777777777777777654 455566666666666667777777777777665 333 335666666777
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
+.++++.|.+.|..-.+ ..|+..-+..++.-
T Consensus 697 ~~~~ie~aR~aY~~G~k-------------------------------------------------~cP~~ipLWllLak 727 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTK-------------------------------------------------KCPNSIPLWLLLAK 727 (913)
T ss_pred HHHHHHHHHHHHHhccc-------------------------------------------------cCCCCchHHHHHHH
Confidence 77777777777754322 23444444443333
Q ss_pred Hh---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-------------------
Q 004922 525 CC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----G------------------- 578 (723)
Q Consensus 525 ~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g------------------- 578 (723)
+- +++-+|..+++.....+. -+...|-..|.+-.+.|+.+.|..++.+.... |
T Consensus 728 leEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH
Confidence 32 245566666666665543 25556666666666777777776666655542 0
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004922 579 ------MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (723)
Q Consensus 579 ------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 636 (723)
+.-|....-.+...|....++++|.+.|.+.++.+ .-+-.+|.-+...+.++|.-+.
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHH
Confidence 11244444455555666666667777776666532 1234566666666666665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-11 Score=121.33 Aligned_cols=284 Identities=10% Similarity=-0.068 Sum_probs=211.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcc-hHHHHHHHHHhcCCHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~A~~ 242 (723)
.|+++.|.+.+.+..+.. |+....+...+++..+.|+++.|.+++..+ |.+.. +.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877654 555555666778888999999999998884 44432 34446888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC-----ChHHHHHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (723)
.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.++.+..........+..+ ..+...+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999864 236778999999999999999999999999998754333221111122211 11222334444444
Q ss_pred cCC---CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH---HHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 318 LGV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 318 ~g~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
... +.++..+..+...+...|+.++|.++++...+ ..||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 321 23788888899999999999999999999987 3345442 12222233456788899999988887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 392 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6332 44 566788999999999999999999644444479999999999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-08 Score=96.30 Aligned_cols=450 Identities=13% Similarity=0.131 Sum_probs=262.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+..|....+.+.++|++..-...|++++.. -|..- + ..++.-.+.-....|-++.++.+|++-++ +.|...
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--Lpvtq-H---~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~~- 172 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQ-H---DRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEAR- 172 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHh-h---ccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHHH-
Confidence 445666778888899999999999988877 33221 0 01111112223466777889999999887 566431
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCC-----CCcccccHHHHHHHHhcCCChHHHHHH-------hhhCC
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-----PVKELDEEFRIVQLCVNKPDVNLAIRY-------ACIVP 218 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~ 218 (723)
...+..|.. .+++++|-+.+...+.... .+.+...|..+.....+..+.-....+ ...++
T Consensus 173 -eeyie~L~~-------~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 173 -EEYIEYLAK-------SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred -HHHHHHHHh-------ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 122333332 7999999988887764321 144556666666665554433222211 11122
Q ss_pred CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 004922 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (723)
Q Consensus 219 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a 275 (723)
+. ...|++|.+.|.+.|.++.|..+|++..+.- .++.-+..+-++|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 22 3779999999999999999999999977642 23334444444443221 12223
Q ss_pred HHHHHHHHhCC-----------CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcC------hhhHHHHHHHHHHcC
Q 004922 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (723)
Q Consensus 276 ~~~~~~m~~~g-----------~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~ 338 (723)
..-|+.+...+ -+-++..|..-+..+.++..+-...|.+..+.- .|- ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcC
Confidence 33444443332 123455666666666677777788888876641 222 235777888899999
Q ss_pred ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 004922 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (723)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----------------~~~~~ 401 (723)
+++.|..+|++..+..-.+ +.-=..+|......=.+..+++.|+++.+......-.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999887521000 11112345555555556777888888777665321111 22345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhh
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
...++.-...|-++....+++++.+..+.....+.|-. .-+....-++++.+.|++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA-mfLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA-MFLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 55566666677778888888888776543222222221 1223445567777777643211
Q ss_pred hhhhccccccCCCCCcCCCCccccccccCCCcCH-HHHHHHHHHHh----h-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC----T-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (723)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~----~-~~~~a~~l~~~m~~~~~~p~~~~~~~li 555 (723)
+. -|+. ..|+..+.-+. + .++.|..+|++..+ |++|...-+-.|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 01 2332 34565555543 2 68999999999999 6766544222222
Q ss_pred --HHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 004922 556 --DACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIK 591 (723)
Q Consensus 556 --~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~ 591 (723)
..=-+.|-...|+.++++.... +++. ...||..|.
T Consensus 592 YA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 2223458888888888886542 3332 234555553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-09 Score=111.16 Aligned_cols=285 Identities=12% Similarity=0.059 Sum_probs=196.8
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHH-HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH--HHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL-LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS--TIVK 371 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~--~ll~ 371 (723)
..++....|+++.|.+.+....+.. +++..+-.+ .....+.|+++.|.+.+.++.+ ..|+...+. ....
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE------LADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHH
Confidence 3444455678888887776655432 233333333 3444788999999999998876 456654333 3356
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACV 444 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~ 444 (723)
.+...|+++.|.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999887644 67788888999999999999999999999876443221 2223333333
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
...+.+...++++.+... .+.+......+..+
T Consensus 241 ~~~~~~~l~~~w~~lp~~------------------------------------------------~~~~~~~~~~~A~~ 272 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK------------------------------------------------TRHQVALQVAMAEH 272 (398)
T ss_pred HhcCHHHHHHHHHhCCHH------------------------------------------------HhCCHHHHHHHHHH
Confidence 334445555555544322 13344555555555
Q ss_pred Hh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004922 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQ 601 (723)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 601 (723)
+. ++.++|..++.+..+. +|+.... ++.+....++.+++.+..++..+. .|+ ...+.++...|.+.|++++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 54 4788899988888774 4454322 344445668999999999988875 454 5567788899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m 647 (723)
|.+.|+.+.+ ..|+..++..+...+.+.|+.+++.+ ++++-
T Consensus 347 A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~---~~~~~ 387 (398)
T PRK10747 347 ASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAA---MRRDG 387 (398)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHH
Confidence 9999999987 47999999999999999999887654 55543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-10 Score=114.66 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=65.7
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (723)
++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++
T Consensus 308 ~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555555555555542 235667888899999999999999999999984 799999999999999999999999999
Q ss_pred HHHHH
Q 004922 607 EEMKH 611 (723)
Q Consensus 607 ~~m~~ 611 (723)
++-..
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 97753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=119.32 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=167.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--cccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
=+..+|...|..+..+ +.-+.++...+..+|...+++++|.++|+.+.+... .-+..+|.+.|.-..+.++. ..+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L--s~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL--SYL 409 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH--HHH
Confidence 3578999999996654 323457888899999999999999999999987632 24577788877654443332 222
Q ss_pred -HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 313 -KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 313 -~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+..+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2223322 45789999999999999999999999999988 455 77899999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..... +--+|.-+...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|++++++...
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 64322 33455567788999999999999999998764 44667777888888899999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-10 Score=102.03 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc--------chHHHHHHHHHhcCCHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~ 239 (723)
+...++|+++|-+|.+.. |...+....++..|.+.|..+.|+++++.+..++ .+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 488899999999999855 8888999999999999999999999998863332 445568888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHhhh--cCChHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYK 313 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~--~~~~~~a~~~~~ 313 (723)
|..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.|-.+.. ..|.-+-... ..+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 23457888999999999999999999999887655432 3344433322 258889999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
+..+.+ +..+..--.+.+.+...|++..|.+.++.+.+. .|+. .+...|..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 988765 234444445678899999999999999999872 3443 4678899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHhhhhhcc
Q 004922 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (723)
Q Consensus 392 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~l~~~~~~~~~~ 465 (723)
....++ .-..+-.......-.+.|..++.+-.+. +|+...+..+|+.... -|...+...++++|......
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 644433 3344444444555567777777666665 8999999999987654 34567777888888766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-09 Score=103.72 Aligned_cols=359 Identities=11% Similarity=0.009 Sum_probs=208.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..+....+.+-++|+|++|+..|.+++..+++ |..| .+...+|...|+|+++++.-...++ +.|+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY---------sNraAcY~~lgd~~~Vied~TkALE--l~P~Y-- 182 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY---------SNRAACYESLGDWEKVIEDCTKALE--LNPDY-- 182 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh---------hhHHHHHHHHhhHHHHHHHHHHHhh--cCcHH--
Confidence 34455667788899999999999999999765 5444 3445558899999999999988887 67743
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.-.|.+-+.+.-..|++++|+.=+.-..-.+...+. .....+-+.+...++ ..+.+-+..-........+.+..
T Consensus 183 ----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 183 ----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred ----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHH
Confidence 234555444455567777776533322211111111 001111111111111 11122222100001111122222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC-Ccc-----c--------HHHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQN-VTL-----N--------IYVFN 295 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g-~~~-----~--------~~~~~ 295 (723)
|...=..+-- ..+...+.+.|...-..+-..+... ..+..|.+.+.+-.... ..+ | ...+.
T Consensus 257 yf~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 257 YFGSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred HHhhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 2211000000 0000000000111111111111110 12333333332211100 000 1 11222
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
..+....|+...+.+-|+..+..... +...|..+..+|...++.++....|....++ -+-|..+|..-...+.-
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHRGQMRFL 406 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhHHHHHHH
Confidence 33334568888899999999887533 3333777888999999999999999999874 23455677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.+++++|..=|++.....+. +...|..+.-+..+.+++++++..|++.++. ++-.+..|+.....+.-.++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 89999999999999887654 6677777777777889999999999999886 466778899999999999999999999
Q ss_pred HHHhhh
Q 004922 456 FRSWTL 461 (723)
Q Consensus 456 ~~~~~~ 461 (723)
|+....
T Consensus 485 YD~ai~ 490 (606)
T KOG0547|consen 485 YDKAIE 490 (606)
T ss_pred HHHHHh
Confidence 987765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-09 Score=99.66 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=204.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCCHHHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~ 244 (723)
+.|....|++.|...+-.- |.....|..+...+. +.+.+..+....|.+...+. -+..+|....+.++++.-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888776544 655555655554442 33333333333444322222 2456677777889999888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc
Q 004922 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++.+....-.. ..+.+-...=-+-
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--s~LA~~v~~idKy 328 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--SYLAQNVSNIDKY 328 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH--HHHHHHHHHhccC
Confidence 88888888655555555555566778999999999999987321 3677888887765532221 1121111110134
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.+.|+..+.+-|.-.++.++|...|+...++ -+.....|+.+.+-|....+...|.+-|+..++..+. |-..|.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL-----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc-----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHh
Confidence 5667888888888999999999999999884 2234567999999999999999999999999987654 888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+.++|.-.+-..-|+-+|++..+.. +-|...|.+|.++|.+.++.++|+..|.+...-
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999998864 558889999999999999999999999876643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=127.65 Aligned_cols=252 Identities=17% Similarity=0.132 Sum_probs=98.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (723)
..|++++|++++++......+|++...|..++...... ++++.|+..++.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~------------------------------~~~~~A~~ay~~ 69 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL------------------------------GDYDEAIEAYEK 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc------------------------------cccccccccccc
Confidence 36888888888755443332344444444444444444 445555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcC-CCcC
Q 004922 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG-VMAD 323 (723)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g-~~~~ 323 (723)
+...+.. +...+..++.. ...+++++|.+++....+.. ++...+...+.. ..++++.+.++++.+.... .+.+
T Consensus 70 l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 70 LLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred ccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 4443221 23334444443 34455555555544443321 222223333332 1244555555555543321 2456
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
...|..+...+.+.|+.++|.+.+++... ..| |....+.++..+...|+.+++..+++...... +.|...+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALE------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 77788888888999999999999999887 345 46678888888999999999888888877654 34556778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
.+..+|...|+.++|+.+|++..+.. +.|+.....+.+++.+.|+.++|.++.++..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 88889999999999999999988763 5578888888899999999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-10 Score=114.90 Aligned_cols=82 Identities=11% Similarity=-0.015 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004922 528 DYYRVKALMNEMRTVGLSPNH--ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (723)
+.+.+.+.++...+.. +-|. ....++.+.|.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555555431 1233 455677788888888888888888544433467877777888888888888888888
Q ss_pred HHHHH
Q 004922 606 FEEMK 610 (723)
Q Consensus 606 ~~~m~ 610 (723)
|++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 87653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=125.65 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh-hcC
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~ 303 (723)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 45667778888888888886544433 2234555666666677778888888888888776432 33444444443 346
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+++.|.+++....+. .+++..+..++..+...++++++.++++.+.. ....+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE---LPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777665543 24555566677777777777777777777654 2213456666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+.+++.++..+. |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|...|++..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 777777766433 46666777777777777777777777666553 3444556667777777777777777776644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-09 Score=100.05 Aligned_cols=329 Identities=12% Similarity=0.043 Sum_probs=186.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHh-----------------------HHHhhhccCccchHHH
Q 004922 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-----------------------GIVKSIREGRIDCVVG 134 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------------~~~~~~~~g~~~~A~~ 134 (723)
.-.+.+.|....|+..+...+.. -|-.|..++.+.-+.. +..++....+.+++..
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777777777776655 5666666555433311 1111222234444444
Q ss_pred HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCC-CCcccccHHHHHHHHhcCCChH-HHHH
Q 004922 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPDVN-LAIR 212 (723)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~A~~ 212 (723)
-++.....|...+. .+-..+ +...-...++++|+.+|+.+.+... +.++..+++.++-+.....++. .|..
T Consensus 249 k~e~l~~~gf~~~~-----~i~~~~--A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 249 KKERLSSVGFPNSM-----YIKTQI--AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHhccCCccH-----HHHHHH--HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44444443332211 111111 1112235666666666666665431 1234444444444333322222 3333
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH
Q 004922 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (723)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 292 (723)
++..-+-.+++.+.+...|.-.++.++|+..|....+.+. ....+|+.+.+-|...++...|++-|+..++-
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------- 393 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------- 393 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-------
Confidence 3333333345555555566666666666666666555321 12344555555566555555555555555443
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
. +.|-..|-.|..+|.-.+...-|+-.|++.... -+.|...|.+|..+
T Consensus 394 --------------------------~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 394 --------------------------N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGEC 441 (559)
T ss_pred --------------------------C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHH
Confidence 2 456677777888888888888888888888763 34567788888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHHh
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EP-NSQCCNILLQACVEA 446 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~ 446 (723)
|.+.++.++|++.|......|-. +...+..+...|-+.++.++|...|.+..+. |. .| ......-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 88888888888888888876633 5577888888888888888888888776552 32 22 112222234455566
Q ss_pred CCHHHHHHHH
Q 004922 447 CQFDRAFRLF 456 (723)
Q Consensus 447 g~~~~a~~l~ 456 (723)
+++++|....
T Consensus 521 ~~~~~As~Ya 530 (559)
T KOG1155|consen 521 KDFDEASYYA 530 (559)
T ss_pred cchHHHHHHH
Confidence 7777765544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-09 Score=99.92 Aligned_cols=407 Identities=12% Similarity=0.039 Sum_probs=231.1
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
..-+.+.|+|++|+..|.++++ +.|+.. ..|+..... +...|+|++.++--.+.++.. |+-+-.+..-.+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~--l~p~ep---iFYsNraAc---Y~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIE--LCPDEP---IFYSNRAAC---YESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHh--cCCCCc---hhhhhHHHH---HHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 3346799999999999999997 677642 233333332 334799999998888887755 777777777778
Q ss_pred HHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHH---------HHhcCC--CCCHHHHHHHHHHHHh
Q 004922 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA---------SKKHLS--SPNMYICRTIIDVCGI 268 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------~~~~~~--~~~~~~~~~l~~~~~~ 268 (723)
++...|+.++|..- .+..++...+....-.--+.++++. +.+.+. -|+....++....+..
T Consensus 192 A~E~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 192 AHEQLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHhhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 88888888877642 2223333333333222223333322 111221 1333333332222211
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC---ChHHHHHHHHHHHHc---CCCc---C------hhhHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL---GVMA---D------MASYNILLKA 333 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~---g~~~---~------~~~~~~ll~~ 333 (723)
. + ...+...+-+-|...-..+=..+.+ .+..+.+.+.+-... .... | ..+.......
T Consensus 264 ~--~------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 D--P------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c--c------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 0 0000000000111111111111111 222222222211110 0001 1 1122222223
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+.-.|+.-.|.+-|+....+. +.+...|--+..+|....+.++..+.|++..+.++. +..+|..-...+.-.++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 445678888888888888731 223333777777788889999999999988887655 67777777777777888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCC
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (723)
+++|..-|++..... +-+...|-.+.-+..+.+.+++++..|++..+.-
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------------------------------ 458 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------------------------------ 458 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------------------
Confidence 999999888887653 3345556666666667888888888888766431
Q ss_pred CCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHcCC
Q 004922 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN---------HISWTILIDACGGSG 562 (723)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~---------~~~~~~li~~~~~~g 562 (723)
+.-...|+.....+. +++++|.+.|+..++. .|+ +.+--.++..-. .+
T Consensus 459 ------------------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qw-k~ 517 (606)
T KOG0547|consen 459 ------------------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQW-KE 517 (606)
T ss_pred ------------------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhch-hh
Confidence 222334444444444 4678888888877763 232 111122222112 27
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
++..|..++++.++...+ ....|..|...-.+.|++++|+++|++...
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888888864321 345678888888888888888888887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-10 Score=115.54 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=203.0
Q ss_pred cCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC-CCCcccccHHHHHHHHhcC
Q 004922 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNK 204 (723)
Q Consensus 126 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 204 (723)
+-+..+|+..|..+.+. .++ +.-.+.++..++-+.+++++|.++|+.+.+.. ...++++.|+.++.-+.+.
T Consensus 332 ~y~~~~A~~~~~klp~h--~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh
Confidence 34456677777663331 221 11234444444555677777777777766543 2345556666555544332
Q ss_pred CCh-HHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 205 PDV-NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 205 ~~~-~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
-.. -.|..+.+..|..+.+|+.+...|.-+++.+.|++.|++..+. .| ..++|+.+..-+.....++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 222 2455566667888999999999999999999999999999883 45 6889999999999999999999999987
Q ss_pred HhCCCcccHHHHHHHHhh---h--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 283 RSQNVTLNIYVFNSLMNV---N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
+. .|...||+.--. + .++++.|+-.|+.....+ +-+.+....+...+.+.|+.++|+++|++...+.
T Consensus 482 l~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--- 553 (638)
T KOG1126|consen 482 LG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--- 553 (638)
T ss_pred hc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---
Confidence 64 466777765442 3 368888998888888765 4466677778888889999999999999988752
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
+.|...--..+..+...+++++|+..++++++.-+. +...|..+...|.+.|+.+.|+.-|..+.+..
T Consensus 554 --~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 554 --PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred --CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 334455555666778889999999999999886322 45677788889999999999998888887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-09 Score=106.77 Aligned_cols=528 Identities=12% Similarity=0.100 Sum_probs=272.4
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
...|+. .+|.+++..|+..|+.+.|- +|.-|.......+ -+.++.++......++.+.+.
T Consensus 20 gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 20 GILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred cCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC----------
Confidence 344544 89999999999999999998 7777755532211 233344555566666666554
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHH---HHHHHHHHHh----cC-------------CCCcccccHHHHHHHHhc
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEM---FVGLMEVLEE----FR-------------LPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~---A~~~~~~~~~----~~-------------~~~~~~~~~~~l~~~~~~ 203 (723)
.| ...++..|.+++.. .|+..- ..+.++.+.. .| ..|........++....-
T Consensus 80 -ep----~aDtyt~Ll~ayr~---hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -EP----LADTYTNLLKAYRI---HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -CC----chhHHHHHHHHHHh---ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 22 22455566665555 555443 2222222211 11 112222222334444555
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 204 ~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
.|-++.+.+....+|.....-.... +.+.. .+....++.+......-.|+..+|.+++..-...|+.+.|..++.+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 6777777777777765432211111 12221 2333444444433321248999999999999999999999999999
Q ss_pred HHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc
Q 004922 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (723)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~ 361 (723)
|++.|++.+.+.|..|+.+ .++...+..++.-|...|+.|+..|+...+-.+..+|....+.+..+.- .-.
T Consensus 230 mke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--------hg~ 300 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--------HGF 300 (1088)
T ss_pred HHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--------hhh
Confidence 9999999999888888877 7788889999999999999999999998888887766533222211100 001
Q ss_pred cHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCH
Q 004922 362 DVFTYSTIVKVFADAKWW-----QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE-PNS 433 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~ 433 (723)
+...+..+.++.....+. .-....+.+..-.|+......|...+. ....|+-++..++...|..-- .. .++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 122233333332111111 112222233222343333333433222 233566666666666654321 11 133
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCC-chhhhhhhhhhccccccCCCCCcCCCCccccccccC--
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-- 510 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 510 (723)
..|..++.-|.+.-+..-...++. ...+.....+..... ..+.+... -++........+..........-.+
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~l---rkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENL---RKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHh---CcchHHHHHhhhhHHHHhcccccchhh
Confidence 344444444433221111111111 000000000000000 00000000 0000000000000000000000000
Q ss_pred CCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 004922 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPDVVAY 586 (723)
Q Consensus 511 ~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~ 586 (723)
..+--..-+.++..|++ +..+++..-+.....-+ ...|..||.-++.....+.|..+.++.... .+..|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 01112233445555554 33344433322222111 156788888888888888888888887642 233455567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQ 639 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~ 639 (723)
..+.+.+.+.+....+..++++|.+.- .+| ...++--++...+..|..+..++
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 788888888888888888888887521 122 24556666667777777666555
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=87.21 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (723)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 630 (723)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-09 Score=99.58 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=97.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
|.++.+.....+.|.+.|++.....++..+.+.|.-.+ ..+|+.+++-....+..+.-...++..... .+-+
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~ 262 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRND 262 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcC
Confidence 44455555556666666666666666666665554322 234555555444444444433444444322 1111
Q ss_pred HHHHHHHHh--hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHH
Q 004922 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (723)
Q Consensus 291 ~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (723)
...-.++.. ..+|+.++|.++..+..+.+..|+ -..+-.+.+-++...-.+..++-.+. .+-+...+.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~t 333 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLST 333 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHH
Confidence 222222221 234556666666666555544333 11112233444444444444433321 2233345566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666655443 45666666666666666666666666665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-09 Score=95.11 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHH
Q 004922 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164 (723)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (723)
.+.+.|..+|-.+++. +|+.+...+.++-+ |.+.|..+.|+.+.+.+.+ .|+.. +....-.+-....-
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnL------fRsRGEvDRAIRiHQ~L~~---spdlT-~~qr~lAl~qL~~D 116 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNL------FRSRGEVDRAIRIHQTLLE---SPDLT-FEQRLLALQQLGRD 116 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHH------HHhcchHHHHHHHHHHHhc---CCCCc-hHHHHHHHHHHHHH
Confidence 4556666666666665 66666665555555 6666777777776666664 33221 22222233333333
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (723)
+...|-+|.|+.+|..+.+.+.. ...+...|+..|-..++|++|+++-
T Consensus 117 ym~aGl~DRAE~~f~~L~de~ef--------------------------------a~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEF--------------------------------AEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhh--------------------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44456666666666655543311 1244555667777777777777777
Q ss_pred HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH---hhhcCChHHHHHHHHHHHH
Q 004922 245 DASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM---NVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 245 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~~~~a~~~~~~m~~ 317 (723)
.++.+.+..+. ...|..+...+....+++.|..++.+..+.. |...--+.++ ..-.|+++.|.+.++...+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 76666544332 2235555555666667777777777666542 2211111111 1233677777777777777
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.+..--+.+...|..+|...|+.++....+..+.+ ..+....-..+...-....-.+.|...+.+-+.. +|+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~------~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt 314 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME------TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPT 314 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCc
Confidence 65444566778888999999999999988888776 3445545455544444444455666665555544 689
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004922 398 TITWSSLINACANA---GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 398 ~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 427 (723)
...++.+|..-... |...+-+.+++.|...
T Consensus 315 ~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 315 MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 99999999876543 3455566666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-06 Score=84.70 Aligned_cols=473 Identities=10% Similarity=0.085 Sum_probs=321.4
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
-..++++..|..+|++++... . ..+.+.++-+..-.++..+..|..++++++..- |.....|...+..-.
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~------r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--Y------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEE 152 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--c------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence 346888899999999999732 1 223334443333445788999999999988744 666677777777777
Q ss_pred cCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
..|++..|.++|..- .++..+|.+.+..=.+-+.++.|..+|+...- +.|++..|-.....=.++|....|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 889999999999873 56679999999999999999999999999886 5699999999998888999999999999
Q ss_pred HHHHhC-CCc-ccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChHHHHHH-------
Q 004922 280 EDLRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI------- 346 (723)
Q Consensus 280 ~~m~~~-g~~-~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~------- 346 (723)
+...+. |-. .+...++++... .++.++.|.-+|+-..+.- +.+ ...|..+...=-+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988764 211 223334444332 2357788888888877652 222 33444444443445554333322
Q ss_pred -HHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCCHH
Q 004922 347 -YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-------TWSSLINAC---ANAGLVE 415 (723)
Q Consensus 347 -~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~---~~~g~~~ 415 (723)
|+.+.. + -+.|..+|--.+..--..|+.+...++|+..... ++|-.. .|-.+=-++ ....+++
T Consensus 310 qYE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 310 QYEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred HHHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222 1 2457778888888888889999999999999865 344211 222221122 2467899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcccccc
Q 004922 416 QAMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (723)
.+.++++..++. ++....||..+--.|+ +..++..|.+++-...
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------------------------------- 431 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------------------------------- 431 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-------------------------------
Confidence 999999998884 4556667666544443 5678888888876543
Q ss_pred CCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 004922 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569 (723)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 569 (723)
|..|...+|-..|..-. ++++.+..+++...+.+.. |..+|.-....=...|+.+.|..
T Consensus 432 ------------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 432 ------------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred ------------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHH
Confidence 34677777777666543 5899999999999996543 67788888888888999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChH-----------
Q 004922 570 ILKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS--RYGSLH----------- 635 (723)
Q Consensus 570 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~----------- 635 (723)
+|+-.+... +.-....|-+.|+-=...|.+++|..+++++.+. .+-...|-++..-=. ..|+-+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~ 570 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDE 570 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchh
Confidence 999998732 1123446667777667799999999999999864 333335554433222 222222
Q ss_pred HHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHh
Q 004922 636 EVQQCLAVYQDMWKA--GYKANDTYLKELIEEWCE 668 (723)
Q Consensus 636 ~a~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~ 668 (723)
....|..+|++.... ...| ..-=-.|++++..
T Consensus 571 ~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 571 NIKRARKIFERANTYLKESTP-KEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 345566677766531 1122 3333455666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=85.14 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (723)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999974
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-07 Score=87.77 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=205.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
..+-..+++...|++..|++...+-.+.+ +.....|..-..+....|+.+.+-.++.++.+.. | .++...+-+..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltra 160 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHH
Confidence 34455667777899999999998877766 2234445555677778899999999999988721 1 34556777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH
Q 004922 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQAC 443 (723)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~ 443 (723)
......|+++.|..-++++...+.. +........++|.+.|++.....++..|.+.|.-.+.. +|..+++-.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988765 67778899999999999999999999999988655543 344455443
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
...+..+.-...|+..... .+.++..-.+++.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~ 271 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAE 271 (400)
T ss_pred hccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHH
Confidence 3333333323333332211 1222333333333
Q ss_pred HH--hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 004922 524 AC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLK 600 (723)
Q Consensus 524 ~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 600 (723)
-+ +++.++|.++..+..+.+..|+ -...-.+.+-++...-++..++-.+. +- ++-.+.+|...|.+++.+.
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHH
Confidence 33 3577889998888888877666 22234456777777777777665543 33 3467888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 639 (723)
+|.+.|+...+ ..|+..+|+-+-.++.+.|++.++.+
T Consensus 346 kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 346 KASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHH
Confidence 99999997776 57999999999999999999888766
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-10 Score=114.11 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 625 (723)
|+..+|.++++.-...|+++.|..++.+|.+.|+..+..-|..|+-+ .|+..-+..++.-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 55555555555555555555555555555555555555555555544 455555555555555555555555555555
Q ss_pred HHHHhcCChHHH---------------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh
Q 004922 626 RARSRYGSLHEV---------------------------------QQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQ 672 (723)
Q Consensus 626 ~~~~~~g~~~~a---------------------------------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~~ 672 (723)
-.+...|..... .-.+..+.+..=.|+.....+|...++..-.|.-+
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 444442221110 00111122222245555555666655555556666
Q ss_pred hhhcccccchHhhhcccC
Q 004922 673 DKNQNQGEVTLCRRTNSQ 690 (723)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~ 690 (723)
+-.++.+.+..+....++
T Consensus 359 ~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 359 EVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hHHHHHhhhcCCccccCc
Confidence 666666666555544444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-07 Score=90.58 Aligned_cols=506 Identities=7% Similarity=-0.025 Sum_probs=302.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-+..+.+-+..+.++.-|+-+.++....+.+|..... +...+.-.|+++.|..++..-.-.+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~---------~aq~l~~~~~y~ra~~lit~~~le~~------ 80 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW---------LAQVLYLGRQYERAAHLITTYKLEKR------ 80 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH---------HHHHHHhhhHHHHHHHHHHHhhhhhh------
Confidence 566777888888899999999999999998878876432 23336778888888877754321111
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC--cchHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~l~ 228 (723)
+......+... +....++++|..++..... ...+..+...-. ...-..+.+. +..+.+ ...+..-.
T Consensus 81 d~~cryL~~~~---l~~lk~~~~al~vl~~~~~----~~~~f~yy~~~~--~~~l~~n~~~---~~~~~~~essic~lRg 148 (611)
T KOG1173|consen 81 DIACRYLAAKC---LVKLKEWDQALLVLGRGHV----ETNPFSYYEKDA--ANTLELNSAG---EDLMINLESSICYLRG 148 (611)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHhcccch----hhcchhhcchhh--hceeccCccc---ccccccchhceeeeee
Confidence 11122233332 3336788888887763210 000000000000 0000000000 000111 12222234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCcccHHHHHHHHhhhc-CCh
Q 004922 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA-HDL 305 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~-~~~ 305 (723)
..|....+.++|...|.+... .|...+.++...-... =..++..++|+.+.-. -...+......+..... +..
T Consensus 149 k~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~ 224 (611)
T KOG1173|consen 149 KVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNR 224 (611)
T ss_pred ehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhc
Confidence 556677788888888888775 4555555444322211 1122333333321111 11123333333333211 110
Q ss_pred H-HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 306 K-FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 306 ~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
+ .....-.+..-.+..-+.........-+...+++.+..++++.+... .++....+..-|.++...|+..+-.-
T Consensus 225 n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~ 299 (611)
T KOG1173|consen 225 NEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFL 299 (611)
T ss_pred cccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHH
Confidence 0 01111111111233445555666667777888899999988888763 45666667777778888888888777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
+=.++.+.-+. ...+|-++.-.|.-.|+..+|.+.|.+...-. +.=...|-.+...|.-.|..++|+..+....+.-.
T Consensus 300 lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 300 LSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 77788776433 67788888888888899999999998876543 11234577778888888888888888765543110
Q ss_pred ccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 004922 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL 544 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~ 544 (723)
-..-+..|..+=.+..++.+.|.++|.+.... .
T Consensus 378 ----------------------------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~ 410 (611)
T KOG1173|consen 378 ----------------------------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-A 410 (611)
T ss_pred ----------------------------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 01123344444444556788888888887764 2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMRED----G-MS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
+-|+...+-+.....+.+.+.+|..+|...... + -+ -...+++.|..+|.+.+++++|+..+++.... ..-|.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~ 489 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDA 489 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCch
Confidence 336677777777777788888998888877631 1 01 14556788888888899999999999888764 24478
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 667 (723)
.++.++.-.|...|+++. |++.|++. -.+.||..+...++....
T Consensus 490 ~~~asig~iy~llgnld~---Aid~fhKa--L~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDK---AIDHFHKA--LALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHhcChHH---HHHHHHHH--HhcCCccHHHHHHHHHHH
Confidence 888888888888888776 44466554 466777766666666544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-10 Score=112.05 Aligned_cols=267 Identities=13% Similarity=0.069 Sum_probs=154.2
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--- 143 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--- 143 (723)
|.. ......++..|...|+++.|+.+++.+++.=..-..-.++.....+..+...|...+++++|+.+|++++..-
T Consensus 196 P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 444 6677779999999999999999999988771011112233344445567777999999999999999998752
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC------CcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------VKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..++.. ....++.++...+...|++++|..+++++.+.... +.-.
T Consensus 275 ~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~-------------------------- 325 (508)
T KOG1840|consen 275 FGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA-------------------------- 325 (508)
T ss_pred cCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH--------------------------
Confidence 233333 34445555555566699999999998887642211 1112
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHL---SSP-N---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ----N 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g 286 (723)
..++.++..++..+++++|..++....+.- +.+ + ..+++.|...|.+.|++++|.++|+..+.. +
T Consensus 326 ----~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 326 ----AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred ----HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 234445555555555555555554432210 111 1 235666666666666666666666655432 1
Q ss_pred CcccH---HHHHHHHhhhc--CChHHHHHHHHHH----HHcC--CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 287 VTLNI---YVFNSLMNVNA--HDLKFTLEVYKNM----QKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 287 ~~~~~---~~~~~ll~~~~--~~~~~a~~~~~~m----~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
-.-+. ..++-+-..+. +.+..|.++|.+. +..| .+-...+|..|...|...|++++|.++.+.+....+
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 11111 11111111111 3344444444332 2222 223356788899999999999999999888875433
Q ss_pred --cCCccccHHHHH
Q 004922 356 --KGVLKLDVFTYS 367 (723)
Q Consensus 356 --~g~~~~~~~~~~ 367 (723)
.|...|+.....
T Consensus 482 ~~~~~~~~~~~~~~ 495 (508)
T KOG1840|consen 482 QRLGTASPTVEDEK 495 (508)
T ss_pred HcCCCCCcchhHHH
Confidence 233344444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=115.74 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=92.1
Q ss_pred hhhccccCCcchhhhHHHHHHHHh---------hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCcc
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLA---------KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI 129 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 129 (723)
+.+++..+|+. ...|..++..+. ..|++++|...++++++. +|+....+... ...+...|++
T Consensus 284 ~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~l------g~~~~~~g~~ 354 (553)
T PRK12370 284 LTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLL------GLINTIHSEY 354 (553)
T ss_pred HHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHH------HHHHHHccCH
Confidence 44457777777 556655554433 234467777777777777 55543332222 2235667777
Q ss_pred chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 130 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
++|+..|+++++ +.|+.. ..+..+..+ +...|++++|+..++++++.. |.+...+...+..+...|++++
T Consensus 355 ~~A~~~~~~Al~--l~P~~~---~a~~~lg~~---l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISA---DIKYYYGWN---LFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHHHHHHH--hCCCCH---HHHHHHHHH---HHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHH
Confidence 777777777776 455433 122222222 333677777777777777655 4443333333333444455555
Q ss_pred HHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 210 AIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 210 A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
|+..+..+ |.+...+..+...|...|++++|...+.++.
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55544432 2223334445555555555555555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-06 Score=83.33 Aligned_cols=447 Identities=14% Similarity=0.107 Sum_probs=258.8
Q ss_pred HHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC--C-cchHHHHHHHHHhcCCHHH
Q 004922 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--A-DILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~ 239 (723)
......|++++|+....+++..+ |++......-+-++.+.++++.|+.+.+.-+. . ...+..-+-..-+.+..++
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 34555899999999999999866 88888888888889999999999977665432 1 1222233334447899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHHHHHHc
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (723)
|+..++.... .+..+...-...+-+.|++++|+.+|+.+.+.+.. -|...-..++.+-. +... +.+...
T Consensus 98 alk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~~~q~v 167 (652)
T KOG2376|consen 98 ALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-QLLQSV 167 (652)
T ss_pred HHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-HHHHhc
Confidence 9999883322 34456777778889999999999999999887543 22222222322211 1111 122222
Q ss_pred CCCcChhhHHHHHH---HHHHcCChHHHHHHHHHHHhhhhcC----Ccc-ccH-----HHHHHHHHHHHccCCHHHHHHH
Q 004922 319 GVMADMASYNILLK---ACCLAGNTVLAQEIYGEVKHLEAKG----VLK-LDV-----FTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 319 g~~~~~~~~~~ll~---~~~~~~~~~~A~~~~~~~~~~~~~g----~~~-~~~-----~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
...| ..+|..+.+ .+...|++.+|+++++...+..... ... -+. ..-.-|.-.+-..|+.++|..+
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2223 335555554 4457899999999999984433211 000 011 1122344456678999999999
Q ss_pred HHHHHHCCCCCCHHH----HHHHHHHHHhcCC-HH-HHHHHHHHHHHcCC----------CCCHHHHHH-HHHHHHHhCC
Q 004922 386 KEDMLSAGVTPNTIT----WSSLINACANAGL-VE-QAMHLFEEMLQAGC----------EPNSQCCNI-LLQACVEACQ 448 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~----~~~li~~~~~~g~-~~-~a~~~~~~~~~~~~----------~~~~~~~~~-ll~~~~~~g~ 448 (723)
|...+...+. |... -|.++. +..-.+ ++ .++..++....... .......|. ++..| .+.
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 9999987643 4432 233322 222111 11 12222221111000 011111221 22222 223
Q ss_pred HHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh-
Q 004922 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT- 527 (723)
Q Consensus 449 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~- 527 (723)
.+.+.++...... ..| ...+.+++..+.+
T Consensus 323 ~~q~r~~~a~lp~-------------------------------------------------~~p-~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 323 MDQVRELSASLPG-------------------------------------------------MSP-ESLFPILLQEATKV 352 (652)
T ss_pred HHHHHHHHHhCCc-------------------------------------------------cCc-hHHHHHHHHHHHHH
Confidence 3333333322110 122 2344455554432
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 528 ---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 528 ---~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
....+..++...-+....-...+.-.++......|+++.|.+++. .+.+.+-.|.. ...+...+.+.
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~ 430 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKI 430 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhc
Confidence 244566666655554333334566677788889999999999999 55555555554 44556667777
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhh
Q 004922 597 KRLKQAFSLFEEMKHY--QIQPNLVTYITL----LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGV 670 (723)
Q Consensus 597 g~~~~A~~~~~~m~~~--g~~p~~~~~~~l----l~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~ 670 (723)
++.+-|.+++.+.... .-.+......++ ...-.+.|+.++ |..+++++.+... +|..+...++.+|++-+
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n~-~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFNP-NDTDLLVQLVTAYARLD 506 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhCC-chHHHHHHHHHHHHhcC
Confidence 7777777777766521 012222333333 333356788555 5668889988543 57888999999999977
Q ss_pred hhhhhcccccch
Q 004922 671 IQDKNQNQGEVT 682 (723)
Q Consensus 671 ~~~a~~~~~~~~ 682 (723)
++.|..+...+.
T Consensus 507 ~eka~~l~k~L~ 518 (652)
T KOG2376|consen 507 PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhhcCC
Confidence 777777665443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-06 Score=80.62 Aligned_cols=447 Identities=11% Similarity=0.056 Sum_probs=232.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChh-hHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 157 (723)
.-+..+.++..|+.+++.....+-+-. ....+ +.-.+.+.|++++|.+.|..+.+..-.|. -+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--------ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--------IAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--------HHHHHHhhccHHHHHHHHHHHhccCCCCc------ccch
Confidence 445558899999999988776543222 22222 22236789999999999998887543332 2222
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (723)
.+..| ..-.|.+.+|..+-... |+++.....+.....+.++-++-..+.+.+.+..+--.+|....-.+-.+
T Consensus 96 nLAcc--~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACC--KFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHH--HHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 22222 22368889988876543 44444445555666677777777777777766666667777777777889
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHhh----hcCChHHHHHH
Q 004922 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV----NAHDLKFTLEV 311 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~----~~~~~~~a~~~ 311 (723)
.+|+++|..+... .|+-...|.-+. .|.+..-++-+.+++.-..+. -|| +...|..... +.| ..|++-
T Consensus 168 QeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ng--r~ae~E 241 (557)
T KOG3785|consen 168 QEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLING--RTAEDE 241 (557)
T ss_pred HHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhcc--chhHHH
Confidence 9999999998874 355555555444 456677777777777766654 234 3333333221 222 223333
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 312 YKNMQKLGVMADMASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 312 ~~~m~~~g~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
.+.+.+.+-.. |- .+.-+++. .+-+.|++++--+.+ +-|.. -..|+--|.+.+++.+|..+.
T Consensus 242 ~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~------~IPEA--RlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 242 KKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK------HIPEA--RLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred HHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh------hChHh--hhhheeeecccccHHHHHHHH
Confidence 34443322110 11 12222222 223455555544433 22222 223444567777777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAG-------LVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+++.- ..| .-|-.-.-.+...| ...-|.+.|.-.-.++...|.. --..+..++.-..++++.+-.+..
T Consensus 309 Kdl~P--ttP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 309 KDLDP--TTP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred hhcCC--CCh--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55421 111 11211111112222 2334555555444443332221 122223333333445555555544
Q ss_pred hhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHHHHH
Q 004922 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMN 537 (723)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~l~~ 537 (723)
+..-- ...|...||..-.-++ ++..+|+++|-
T Consensus 385 i~sYF-----------------------------------------------~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 385 IESYF-----------------------------------------------TNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHh-----------------------------------------------cCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 43211 1233333333222222 45666666665
Q ss_pred HHHHcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCC
Q 004922 538 EMRTVGLSPNHISWTI-LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQ 615 (723)
Q Consensus 538 ~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (723)
.+....++ |..+|.+ |..+|.+++..+.|+.++-++.. .-+..+.--+| +-|.+.+.+=-|-+.|+.+.. ..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 55443333 4445543 34566677777777666544432 22233333333 456666666666666666654 45
Q ss_pred CCHHHHHH
Q 004922 616 PNLVTYIT 623 (723)
Q Consensus 616 p~~~~~~~ 623 (723)
|++.-|..
T Consensus 492 P~pEnWeG 499 (557)
T KOG3785|consen 492 PTPENWEG 499 (557)
T ss_pred CCccccCC
Confidence 66666653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=103.78 Aligned_cols=258 Identities=16% Similarity=0.122 Sum_probs=180.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LS-SPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
|.-..+...|...|...|+++.|..++....+. |. .|.+.+ .+.+...|...+++.+|..+|+++.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL------- 268 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL------- 268 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-------
Confidence 344466777999999999999999999887663 21 244433 4457778889999999999998765
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccccHH-HHH
Q 004922 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYS 367 (723)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~~~~-~~~ 367 (723)
.+++.......+.-..+++.|..+|.+.|++++|...++....+... |...|.+. .++
T Consensus 269 -------------------~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 269 -------------------TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -------------------HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 34444443333334567788888999999999999988888765443 22333443 366
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C---CCCCH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSA---GVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQA----G---CEPNS 433 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~ 433 (723)
.+...++..+++++|..++....+. -+.++ ..+++.|...|...|++++|.+++++..+. + ..-..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788899999999988876542 12222 357888999999999999999998877653 1 11224
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
..++.+...|.+.++..+|.++|.+..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~----------------------------------------------------- 436 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAK----------------------------------------------------- 436 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHH-----------------------------------------------------
Confidence 467777788888888888888886432
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (723)
Q Consensus 514 ~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (723)
.+. .....+.+-...+|..|...|...|++++|+++.+...
T Consensus 437 --------------------~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 --------------------DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 11111122234588999999999999999999988776
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.1e-09 Score=110.57 Aligned_cols=115 Identities=4% Similarity=-0.117 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc---------CCChHHHHHHhhhC----CCCcchHHHHHHHHHhc
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKK 234 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 234 (723)
.+..++|+..|++.++.. |+....+..++..+.. .+++++|...++++ |.+..++..+...+...
T Consensus 274 ~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 355678888888888755 6666666555544331 12244454444432 44445555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|++++|...|++..+.++ .+...+..+...+...|++++|+..+++..+.
T Consensus 352 g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555555555554321 13444555555555555555555555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-07 Score=90.30 Aligned_cols=439 Identities=13% Similarity=0.064 Sum_probs=272.4
Q ss_pred hccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc
Q 004922 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (723)
-..++|...+...+.+++. .|... .++.+..- .+-..|+-++|.+..+..+... +.+...|..++-.+..
T Consensus 18 yE~kQYkkgLK~~~~iL~k--~~eHg---eslAmkGL---~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK--FPEHG---ESLAMKGL---TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh--CCccc---hhHHhccc---hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhh
Confidence 3678888888888888873 44322 23222221 2333799999999998877644 6788999999999999
Q ss_pred CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..++++|++.|..+ |++...+..+.-.-++.|+++..........+. .| ....|..+..++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998774 667788888888888999999999998888874 34 455688888888999999999999
Q ss_pred HHHHHhCCC-cccHHHHHHH--------HhhhcCChHHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChHHHHHHHH
Q 004922 279 YEDLRSQNV-TLNIYVFNSL--------MNVNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYG 348 (723)
Q Consensus 279 ~~~m~~~g~-~~~~~~~~~l--------l~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~ 348 (723)
+++..+... .|+...+.-. +....|..+.|++.+..-... ..|-. .-..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999987642 3554443222 223446667776666554432 12322 22344567788899999999999
Q ss_pred HHHhhhhcCCccccHHHHHHHH-HHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 004922 349 EVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMAL-KVKEDMLSAGVTPNTITWS-SLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 349 ~~~~~~~~g~~~~~~~~~~~ll-~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.+.. ..||..-|...+ .++.+-.+.-+++ .+|....+. .|....-. .=++......-.+..-.++..+.
T Consensus 244 ~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9887 346766555544 4443333333344 556555443 11111111 11111111223344556677777
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (723)
+.|+++- +..+...|- ++..+. +++++...-.....+. ....+
T Consensus 316 ~Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~------------------------------~~f~~ 358 (700)
T KOG1156|consen 316 SKGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGT------------------------------GMFNF 358 (700)
T ss_pred hcCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccc------------------------------cCCCc
Confidence 7776553 333333332 112211 3333332211100000 00000
Q ss_pred cccc-CCCcCHHHHHHH--HHHH--hhcHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004922 506 DKRF-SFKPTTTTYNIL--MKAC--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (723)
Q Consensus 506 ~~~~-~~~p~~~~~~~l--l~~~--~~~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (723)
.... --+|....|... +..+ .++.+.|...++..+.. .|+.+ .|..=...+.+.|++++|..++++..+..
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 0000 025555555443 3333 35788999999988874 45544 55555688899999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
.||...=..-.+-..++.+.++|.++.....+.|. +..-.-.-+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mq 480 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQ 480 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhh
Confidence 35555444666777789999999999999988876 4444444343
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-05 Score=81.76 Aligned_cols=513 Identities=11% Similarity=0.126 Sum_probs=291.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+..+|+.......|++++.. +... .+...+..+++-... .|-++.++.++++.++.. |.. ....+..++
T Consensus 112 l~~Q~~iT~tR~tfdrALra-Lpvt--qH~rIW~lyl~Fv~~---~~lPets~rvyrRYLk~~--P~~---~eeyie~L~ 180 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRA-LPVT--QHDRIWDLYLKFVES---HGLPETSIRVYRRYLKVA--PEA---REEYIEYLA 180 (835)
T ss_pred HHhcchHHHHHHHHHHHHHh-CchH--hhccchHHHHHHHHh---CCChHHHHHHHHHHHhcC--HHH---HHHHHHHHH
Confidence 45788888888889888874 2221 133456666664444 788889999999998755 543 455677788
Q ss_pred cCCChHHHHHHhhhC-----------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCH--HHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV-----------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNM--YICRTIIDVCG 267 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~--~~~~~l~~~~~ 267 (723)
..+++++|.+.+... +.+...|..+-+...+.-+.-.-+.+ +.+.+.|+. +|. ..|..|.+.|.
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 889999888776664 33446666666666665444333332 223333332 453 46999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc------------------C------ChHHHHHHHHHHHHcCC---
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVYKNMQKLGV--- 320 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~------------------~------~~~~a~~~~~~m~~~g~--- 320 (723)
+.|.+++|.++|++....- ..+.-|..+..+|+ + +++..+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999987752 23333333332221 1 23334445555544320
Q ss_pred --------CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 321 --------MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 321 --------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
+.+...|..-+. +..|+..+-...|.+..+-....... .-...|..+...|-..|+++.|..+|++..+
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 112233322222 23455666666666665421111000 1123588888889999999999999999887
Q ss_pred CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------C------CCCHHHHHHHHHHHHHhCCHHH
Q 004922 392 AGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQAG-----------C------EPNSQCCNILLQACVEACQFDR 451 (723)
Q Consensus 392 ~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~------~~~~~~~~~ll~~~~~~g~~~~ 451 (723)
...+-- ..+|..-...=.+..+++.|+++++.....- . ..+...|+..++.-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 644321 2345555555567778888888887664321 0 1133445556666666778888
Q ss_pred HHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHH-HHHHHHHHHhhcHH
Q 004922 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKACCTDYY 530 (723)
Q Consensus 452 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~ 530 (723)
...+|+++.+..+ ..|... -|..++.- -+-++
T Consensus 496 tk~vYdriidLri----------------------------------------------aTPqii~NyAmfLEe-h~yfe 528 (835)
T KOG2047|consen 496 TKAVYDRIIDLRI----------------------------------------------ATPQIIINYAMFLEE-HKYFE 528 (835)
T ss_pred HHHHHHHHHHHhc----------------------------------------------CCHHHHHHHHHHHHh-hHHHH
Confidence 8888888776543 133322 12222211 01256
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHI-SWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKV--CVRSKRLKQAFS 604 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~ 604 (723)
++.++++.-+..-..|+.. .|+..+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+ =-+.|....|++
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777666554456654 56666655543 3468999999999998 676553322222211 123688899999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H-Hh-hhhhhhhcc
Q 004922 605 LFEEMKHYQIQPN--LVTYITLLRAR-SRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE--W-CE-GVIQDKNQN 677 (723)
Q Consensus 605 ~~~~m~~~g~~p~--~~~~~~ll~~~-~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~--~-~~-g~~~~a~~~ 677 (723)
++++... ++++. ...|+..|.-. .-.| +-....+|++..+. -||...-...|+- + ++ |.++.|...
T Consensus 608 iyerat~-~v~~a~~l~myni~I~kaae~yG----v~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 608 IYERATS-AVKEAQRLDMYNIYIKKAAEIYG----VPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHHhC----CcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999764 34442 34566555432 1222 11223355555544 2443333332221 1 12 555555544
Q ss_pred cccchHhhhcccCChhhhHHHHHHHHHHhhhh
Q 004922 678 QGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709 (723)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 709 (723)
+. .+.+--+++....+......+--+.|.
T Consensus 681 ya---~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YA---HGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HH---hhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 32 333334455555555544444334333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-08 Score=95.08 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=130.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 556677888888888888888888877643 2356677778888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
+.+...+..+...+...|++++|.+.++..... .........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED---PLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHcCCHHH
Confidence 223334455556666667777777777666541 1011233445556666677777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
|...+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776655322 4456666667777777777777777776665 23455556666666667777777776665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-09 Score=99.26 Aligned_cols=196 Identities=11% Similarity=0.038 Sum_probs=116.6
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+...|++++|+..+++++.. .|.... .+..+...+...|++++|.+.+++..+. .|+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~ 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYL------AYLALALYYQQLGELEKAEDSFRRALTL--NPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 3677888899999999999999999999887 455332 2234455588999999999999999874 34322
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~ 225 (723)
..+..+.. .+...|++++|+..++++......+.....+..++..+...|++++|...+... |.+...+.
T Consensus 100 ---~~~~~~~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 100 ---DVLNNYGT---FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred ---HHHHHHHH---HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 12223333 334489999999999998764322333334444455555555555555544432 33334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
.+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555555554443 1223333444444444455555555444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-06 Score=84.60 Aligned_cols=456 Identities=13% Similarity=0.083 Sum_probs=282.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..| ..+++...+.+.+..+.. .|.+...+-..+. .++..|+-++|.+..+..++..+. ..+
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL------~L~~lg~~~ea~~~vr~glr~d~~--S~v 76 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGL------TLNCLGKKEEAYELVRLGLRNDLK--SHV 76 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccc------hhhcccchHHHHHHHHHHhccCcc--cch
Confidence 33444444444 458888889998988886 5554433323333 378899999999999988874332 222
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHH----HhhhCCCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~ 226 (723)
..-.++++- ....++++|+++|..++..+ +++...+.-+.-.-.+.++++.... +++..|.....|..
T Consensus 77 CwHv~gl~~------R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 77 CWHVLGLLQ------RSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred hHHHHHHHH------hhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 222223222 23789999999999998755 8888888777666667777765544 34445777788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH---H
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---S 296 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ 296 (723)
++.++.-.|++..|..+.+...+... .|+...+.... ....+.|.+++|++.+..-... ..|...+. +
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka 226 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHH
Confidence 99999999999999999999876542 35554443322 2346678888888777654332 12222221 2
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHH-HHHHHcCChHHHH-HHHHHHHhhhhcCCccccHHHHHHH-HHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL-KACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTI-VKVF 373 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~~~~~~A~-~~~~~~~~~~~~g~~~~~~~~~~~l-l~~~ 373 (723)
-+....+++++|..++..++..+ ||..-|...+ .++.+-.+.-++. .+|...... .|....-..+ +..+
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~------y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK------YPRHECPRRLPLSVL 298 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc------CcccccchhccHHHh
Confidence 22234578999999999999874 6666655544 4554333333444 677766542 1221111111 1111
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--H
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ----AG----------CEPNSQCC--N 437 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~ 437 (723)
-...-.+..-.++..+++.|++ .++..+...|-.....+-..++.-.+.. .| -+|+...| -
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 1222233445666777788865 3455555555443333322222222221 11 14555444 4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (723)
.+...+-+.|+++.|...++....+ .|+.+-
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH-------------------------------------------------TPTliE 406 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH-------------------------------------------------TPTLIE 406 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc-------------------------------------------------CchHHH
Confidence 5677888999999999999876643 454332
Q ss_pred ---HHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------H
Q 004922 518 ---YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------Y 586 (723)
Q Consensus 518 ---~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~ 586 (723)
.-+-|..+.++++.|...+++..+... ||...-.--..-..+.++.++|.++.......|. +... |
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHH
Confidence 223445556789999999999988643 4655554566666788999999999999988775 3322 2
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHH
Q 004922 587 TTA--IKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 587 ~~l--i~~~~~~g~~~~A~~~~~~m~ 610 (723)
-.+ ..+|.+.|++..|++=|....
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 222 246778888888877666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-08 Score=86.54 Aligned_cols=198 Identities=13% Similarity=-0.002 Sum_probs=146.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
.......|.-.|.+.|++..|..-+++++++ +|+.+..++....+ |.+.|..+.|.+.|+++++ +.|+.-
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAls--l~p~~G 103 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHY------YQKLGENDLADESYRKALS--LAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH------HHHcCChhhHHHHHHHHHh--cCCCcc
Confidence 3667788899999999999999999999999 88887776666666 8999999999999999998 667544
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~ 225 (723)
..+|.+..-+|. .|++++|...|++.+.....+....++..++-...+.|+.+.|...+.+. |..+.+..
T Consensus 104 ---dVLNNYG~FLC~---qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 104 ---DVLNNYGAFLCA---QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred ---chhhhhhHHHHh---CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 455555554455 89999999999999876666666666666776666777777777666552 55556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.+.......|++..|...++.....+. ++..+.-..|+.-...|+.+.+.+.=.++.+
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677777777777777777777666554 6666666666666666766666555544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-06 Score=83.91 Aligned_cols=460 Identities=12% Similarity=0.025 Sum_probs=242.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhh
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 156 (723)
=+..+..+|++++|.+...+.+..++++. .++.+=+.++.+.++|++|+.+.+.=.. ...++..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--------~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDE--------DAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcH--------hhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhh-
Confidence 35566778999999999999999864433 2334555667899999999965543221 11111111
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-CCCcchHHHHHHH-HHhc
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVRE-FGKK 234 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~-~~~~ 234 (723)
+=+++|.| +.++.++|+..++ +..+.+.-....-++.+-+.+++++|..+|..+ ..+...+...+.+ +...
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 35566654 4699999999888 334555556677788899999999999999887 3333333332222 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------Cc--ccHHHHHHHHh----
Q 004922 235 RDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-------VT--LNIYVFNSLMN---- 299 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-------~~--~~~~~~~~ll~---- 299 (723)
+-...+. +.+.... .| +-..+....-.+...|+|.+|+++++...+.+ -. -+...=-..|+
T Consensus 156 ~a~l~~~-~~q~v~~---v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 156 AAALQVQ-LLQSVPE---VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHhhhHH-HHHhccC---CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 1111111 2222222 23 22334444455778899999999999883211 11 11111111222
Q ss_pred ---hhcCChHHHHHHHHHHHHcCCCcChhh----HHHHHHHHHHcCChH-HHHHHHHHHHhhhhcCC------ccccHHH
Q 004922 300 ---VNAHDLKFTLEVYKNMQKLGVMADMAS----YNILLKACCLAGNTV-LAQEIYGEVKHLEAKGV------LKLDVFT 365 (723)
Q Consensus 300 ---~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~~~~~-~A~~~~~~~~~~~~~g~------~~~~~~~ 365 (723)
-..|+..+|..+|...++.. ++|... .|.|+.+-....-++ .++..++........+. -+.....
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 13488999999999998876 344422 233332222111112 12222222211000000 0011111
Q ss_pred H-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 366 Y-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN--AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 366 ~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
. +.++..|. +.-+.+.++-.... +..| ...+.+++..+.+ ......+.+++...-+..-.-...+.-.++..
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1 22232222 22223333222221 1122 3445555554433 23467777777777665322234566677778
Q ss_pred HHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHH
Q 004922 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll 522 (723)
....|+++.|.+++......... -+...+..|..+.+-..+
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~s---------------------------------------s~~~~~~~P~~V~aiv~l 426 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKS---------------------------------------SILEAKHLPGTVGAIVAL 426 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhh---------------------------------------hhhhhccChhHHHHHHHH
Confidence 88999999999999844311100 011112245544443333
Q ss_pred HHHhhcHHHHHHHHHHHHHc--CCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 523 KACCTDYYRVKALMNEMRTV--GLSPNHISWTILI----DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 523 ~~~~~~~~~a~~l~~~m~~~--~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
.--.++.+.|..++++.+.. .-.+......+++ ..-.+.|+-++|..+++++.+.. .+|..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 33334444455555544431 0111222223333 33345688888888888887743 45777777788887754
Q ss_pred CCHHHHHHHHHHH
Q 004922 597 KRLKQAFSLFEEM 609 (723)
Q Consensus 597 g~~~~A~~~~~~m 609 (723)
++++|..+-+.+
T Consensus 506 -d~eka~~l~k~L 517 (652)
T KOG2376|consen 506 -DPEKAESLSKKL 517 (652)
T ss_pred -CHHHHHHHhhcC
Confidence 677777766654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-06 Score=78.31 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
-++|.++++.-.+ +.|+- ...+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+.+|++.|.
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3677888777666 34543 35677788899999999999999998874 7999999999999999999999999999
Q ss_pred HHHHCCCCCC
Q 004922 608 EMKHYQIQPN 617 (723)
Q Consensus 608 ~m~~~g~~p~ 617 (723)
...+ +.|+
T Consensus 496 ~ALr--~dP~ 503 (564)
T KOG1174|consen 496 KALR--QDPK 503 (564)
T ss_pred HHHh--cCcc
Confidence 8876 4454
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-07 Score=91.15 Aligned_cols=283 Identities=13% Similarity=0.072 Sum_probs=216.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH----HHHHHhhhCCCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~ 229 (723)
...++...+-.+...+++.+-.++++.+.+.. |.....+..-+..+...|+-. .+.++.+..|+.+.+|.+++-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 33455555555666899999999999998865 544444544444555666544 455667777999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCcccHHHHHHHHhhhcCChH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLK 306 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~ 306 (723)
.|...|++.+|++.|.+.... .|. ...|-.+...|+-.|..++|...|...-+. |.. -...|..+=....++.+
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHH
Confidence 999999999999999998763 232 457999999999999999999999887664 321 13344444444568899
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc-CCccc-cHHHHHHHHHHHHccCCHHHHHH
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKL-DVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-g~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+......+. +.-.+ -..+++.|..+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988764 557888888877777889999999999988742211 10111 23468899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
.+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++..+..
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 99999987655 8899999999999999999999999998764 7888777777775543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-06 Score=77.33 Aligned_cols=442 Identities=12% Similarity=0.084 Sum_probs=250.5
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+....++..|+.+++.....+-... +..+..+..|.- ..|++++|...+.-+......| ...+..++-..-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~--~el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAP--AELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCC--cccchhHHHHHH
Confidence 3466788888888887764332211 234444443332 3799999999999887755333 333444444444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
-.|.+.+|..+..+.|+++..-.-|...-.+.++-++-...-..+.. ...---.|....-..-.+++|+++|...
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988876666666666677776666655554432 1222233444433445789999999998
Q ss_pred HhCCCcccHHHHHHHHhh---hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc
Q 004922 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
... .|+....|.-+.. ...-++-+.++++-..+. ++.++...|.......+.=.-..|..-...+.. ++.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 876 3454444444442 224556667777666554 233344455444333333222223222222222 221
Q ss_pred cccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 360 KLDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.. | ..+.-+++ ...-+.|++++--+.+. .| ..--.++-.|.+.+++.+|..+..++.-. .|-..
T Consensus 251 --~~--~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 251 --QE--Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred --cc--c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 01 1 12222233 23456788887766653 33 23345666788999999999888776311 22222
Q ss_pred HHHHHHHHHHHhCCH-------HHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc
Q 004922 435 CCNILLQACVEACQF-------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~-------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (723)
....++ +...|+- .-|.+.|+-. .
T Consensus 320 ilKgvv--~aalGQe~gSreHlKiAqqffqlV-----------------------------------------------G 350 (557)
T KOG3785|consen 320 ILKGVV--FAALGQETGSREHLKIAQQFFQLV-----------------------------------------------G 350 (557)
T ss_pred HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHh-----------------------------------------------c
Confidence 222222 2233332 2233333221 1
Q ss_pred ccCCCcCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 508 RFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (723)
Q Consensus 508 ~~~~~p~~~~~~~ll~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (723)
..+..-|...-..-+.+| ...++++.-.++.+..--...|...|| +..+++..|++.+|+++|-++....++ |..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 222444433322222222 246778888888877765555666665 678889999999999999887754444 566
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHcCCC
Q 004922 585 AYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL-LRARSRYGSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 585 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
+|-+++ ++|.+.|+++.|+.++-++. -.-+..+.-.+ ..-|.+.+.+--+.+ -|+.+......
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK---AFd~lE~lDP~ 493 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK---AFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHccCCC
Confidence 665554 78899999999987766653 23344444443 456777776555544 45555544433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-06 Score=90.49 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=54.8
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCC
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------YTTAIKVCVRSKR 598 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g~ 598 (723)
+++.+|...++....... -|...-+-.+..+.++|++++|.+++......+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555433 2666666777778888889999888888876654442211 2345577888888
Q ss_pred HHHHHHHHHHHH
Q 004922 599 LKQAFSLFEEMK 610 (723)
Q Consensus 599 ~~~A~~~~~~m~ 610 (723)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888888777655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-06 Score=88.34 Aligned_cols=367 Identities=13% Similarity=0.023 Sum_probs=204.6
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
.|.+.++.||.- ...|..|...|+...+...|...|+++.+. +|+.+.. -..+...|+....++.|..+.-
T Consensus 480 ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaea------aaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 480 ALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEA------AAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchhhhh------HHHHHHHhhccccHHHHHHHHH
Confidence 377888999999 889999999999999999999999999888 6664432 2345666889999999988854
Q ss_pred HHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..-+. .|... ...+ ....-..+.+.++...|+.-|+..+... |.+...|..++.+|.+.|++..|.+.|.++
T Consensus 551 ~~~qk--a~a~~---~k~n-W~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 551 RAAQK--APAFA---CKEN-WVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHhhh--chHHH---HHhh-hhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 43332 22110 0000 0111111344788888999898887644 899999999999999999999999999775
Q ss_pred ----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 004922 218 ----PRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-- 285 (723)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-- 285 (723)
|.+...-.-....-+..|.+.+|+..+..+...- ...-..++-.+...+.-.|-..+|.+.++.-++.
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333444445666788899999999888875421 1112333444444444445455555555543321
Q ss_pred -----CCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh---H---HHHHHHHHHHhhh
Q 004922 286 -----NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---V---LAQEIYGEVKHLE 354 (723)
Q Consensus 286 -----g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~---~A~~~~~~~~~~~ 354 (723)
...-+...|..+ .++..+|-+.. .. .|+......+..-.-+.+.. + -+.+.+-.-.+
T Consensus 703 ~~l~h~~~~~~~~Wi~a--------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVA--------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHHHhhhhhHHHHHHH--------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 101111111111 12333333332 11 12222222222212222222 1 11111111111
Q ss_pred hcCCccccHHHHHHHHHHHHc----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFAD----A----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~----~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
...+..+|..++..|.+ . .+...|...+.+..+..-. +..+|+.|.-. ...|++.-+...|-+-..
T Consensus 771 ----l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 771 ----LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred ----HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 11223344444433332 1 1223566666666554222 45555555433 555666666666655444
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
.. +.+..+|..+--.+.+..+++-|...|....
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 32 3355566666666677777777777776554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.7e-08 Score=88.11 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=109.5
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (723)
..+...|.+.|-+.+|...|+..+++-..| .+|-.|.+++.+ -..++.|+.++.+-++.. |.++.....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~------dTfllLskvY~r---idQP~~AL~~~~~gld~f--P~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP------DTFLLLSKVYQR---IDQPERALLVIGEGLDSF--PFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch------hHHHHHHHHHHH---hccHHHHHHHHhhhhhcC--Cchhhhhhh
Confidence 345555677777777777777666643222 355555555444 566777777776655433 555555555
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004922 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (723)
..+.+...++.++|.++++.+ |.+.++...+...|.-.++.+-|+..|.++.+.|+ -+...|+.+.-.|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 555555555555555555443 22334444444445555555555555555555554 2344455555555555555
Q ss_pred HHHHHHHHHHHhCCCcccH--HHHHHH--HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHH
Q 004922 273 MKSRAIYEDLRSQNVTLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 348 (723)
+-++.-|.+....--.|+. ..|-.+ +.+-.||+..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 5555555554433221211 111111 1112244444444444444332 2233444444444444444444444444
Q ss_pred HHH
Q 004922 349 EVK 351 (723)
Q Consensus 349 ~~~ 351 (723)
...
T Consensus 454 ~A~ 456 (478)
T KOG1129|consen 454 AAK 456 (478)
T ss_pred Hhh
Confidence 443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-06 Score=87.65 Aligned_cols=285 Identities=14% Similarity=0.044 Sum_probs=191.2
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.+...|++++|++.++.-... + +|.. .....-+. -+...|+.++|..++..++..+ |++..++..+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I-~Dk~---~~~E~rA~---ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-I-LDKL---AVLEKRAE---LLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-C-CCHH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 367889999999999876653 2 2211 12233333 3444899999999999999988 99999888888877
Q ss_pred hcCC-----ChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 004922 202 VNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (723)
Q Consensus 202 ~~~~-----~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (723)
.... ..+.-.++++.+ |.....-...+. +.....+. .+...+..+...|+++ +++.+-..|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 3332 345555555553 332222111121 11222333 3344456667777632 56677777776666
Q ss_pred HHHHHHHHHHHHhC----C----------CcccHHHHHHHHhh----hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHH
Q 004922 272 YMKSRAIYEDLRSQ----N----------VTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLK 332 (723)
Q Consensus 272 ~~~a~~~~~~m~~~----g----------~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~ 332 (723)
..-..+++...... | -.|....|...+.+ +.|+++.|++.++..+.. .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 12444455444333 458999999999999886 355 677888889
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------H--HHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI------T--WSSL 404 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~--~~~l 404 (723)
.+-..|++.+|.+.++..+.+ -.-|...-+-.+..+.+.|++++|.+++...-..+..|-.. . ....
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~L-----D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEAREL-----DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999885 23567777788888999999999999999887765433221 1 2445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004922 405 INACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+|.+.|++..|+..|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 67888999999988877766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-05 Score=82.34 Aligned_cols=387 Identities=14% Similarity=0.099 Sum_probs=194.6
Q ss_pred HHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004922 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
.+++...|.-+.|-++- .+..--.+-|+.|.+.|.+..|.+.-..=.. ...|......+..++.+..-+++|-.
T Consensus 596 ~q~l~dt~qd~ka~elk----~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagd 669 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK----ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGD 669 (1636)
T ss_pred HHHHHhcCchhhhhhhc----cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhh
Confidence 34444455444443332 2222233456777788877776655322111 12355555555555566656666666
Q ss_pred HHHHHHhCCCcccHHHHHHHHhhhc-C-ChHHHHHHHHHHHHcCCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 278 IYEDLRSQNVTLNIYVFNSLMNVNA-H-DLKFTLEVYKNMQKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~-~-~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
+|+.+..- + -.+.++. | .+..|.++-+-. .+..+++. .....-+...|+++.|..-|-+...
T Consensus 670 lfeki~d~----d-----kale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-- 734 (1636)
T KOG3616|consen 670 LFEKIHDF----D-----KALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-- 734 (1636)
T ss_pred HHHHhhCH----H-----HHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--
Confidence 66654421 0 0111110 0 111121111110 11111111 1122233344555555554433322
Q ss_pred hcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.-..+.+......|..|+.+++.+.+... -..-|..+.+-|+..|+++.|.++|-+. .
T Consensus 735 -----------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~ 792 (1636)
T KOG3616|consen 735 -----------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------D 792 (1636)
T ss_pred -----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------c
Confidence 11234455566778888888887776532 2344666777788888888888877653 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
.++-.|.+|.+.|+|..|.++-.+.... ...
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~~-------------------------------------------------e~t 823 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHGP-------------------------------------------------EAT 823 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcCc-------------------------------------------------hhH
Confidence 3556677888888888887776554311 111
Q ss_pred HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 515 ~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
...|-+-..-+- +.+.+|++++-.+.. |+. -|.+|-+.|..+..+++.++-.-. --..|.-.+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHH
Confidence 222221111111 123445554433322 332 367788888888888777665421 113455566677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hh
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VI 671 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g-~~ 671 (723)
|-..|+...|..-|-+..+ |.+-++.|..++.++++-+ + ....|-. + .-..+.-.|.+. .-
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayr---i---aktegg~-n--~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYR---I---AKTEGGA-N--AEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHH---H---Hhccccc-c--HHHHHHHHHHHhhCc
Confidence 7778888888877765532 5555666666666655322 2 2223321 1 122333333331 01
Q ss_pred hhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 004922 672 QDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGL 719 (723)
Q Consensus 672 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 719 (723)
+.|..++. ..-+++.-+.+.++++++++..|+.++
T Consensus 954 daavklln-------------k~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 954 DAAVKLLN-------------KHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred HHHHHHHH-------------hhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 11222211 334566777777778888877777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-06 Score=83.12 Aligned_cols=287 Identities=12% Similarity=-0.009 Sum_probs=172.4
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhH
Q 004922 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~ 159 (723)
+.+-.|+-..|.+.+-.+.....-|.....+..+ ...+...|+.++|+-.|+.... +.|.....-..|..|+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~l------ak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMAL------GKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHH------hhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH
Confidence 3344455555555555444444455544443333 3337778888888888887775 5665443333333332
Q ss_pred HHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 004922 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (723)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~ 235 (723)
...|+++.-..+...+.... ......|..-+..+-...++..|+.+.++. +.+...+..-...+...+
T Consensus 277 ------~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 277 ------GQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE 348 (564)
T ss_pred ------HhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc
Confidence 33677777666666554322 122333555555555666777777666553 344455666667777788
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-hhhc---CChHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFTLE 310 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~---~~~~~a~~ 310 (723)
+.++|.-.|..... ..| +...|.-|+..|...|++.+|.-+-++..+. +..+..+...+- .++. .--++|.+
T Consensus 349 R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred chHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888877765 333 6778888888888888888877666655432 112333333221 1222 23356666
Q ss_pred HHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (723)
Q Consensus 311 ~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 389 (723)
+++.-.+. .|+ ....+.+...+...|..+++..+++.... ..||....+.|...+...+.+.+|++.|...
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66665543 333 33455566667777777777777777665 5677777777777777777777777777777
Q ss_pred HHCC
Q 004922 390 LSAG 393 (723)
Q Consensus 390 ~~~~ 393 (723)
+..+
T Consensus 498 Lr~d 501 (564)
T KOG1174|consen 498 LRQD 501 (564)
T ss_pred HhcC
Confidence 6654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-06 Score=88.18 Aligned_cols=206 Identities=12% Similarity=-0.031 Sum_probs=128.8
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
||+. ...|..++..+...|+.+++...+.+...... +++....... ....+...|++++|...++++++.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV------EALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 6777 77888888888888999998888887776632 2222222111 122357899999999999999874
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA 220 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 220 (723)
.|+.. ..+......+......+..+.+.+.++. .....|........++..+...|++++|.+.++.. |.+
T Consensus 73 ~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 55443 1111100001111113555555555544 11222333344445566777888888887776663 666
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..+...|...|++++|...++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677777888888888888888888877664321 222 23446777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-07 Score=86.22 Aligned_cols=127 Identities=14% Similarity=0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+.++|.+.|.+.+|.+.|+.... -.|-..||..|-+.|.+....+.|+.++.+-++.-+ -|+....-+.+.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHH
Confidence 344555555555555555554443 234444555555555555555555555555544311 1222233344444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
...++.++|.++++...+.. ..++.....+...|.-.++++.|+..|+++...+
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 55555555555555554432 2333344444444444555555555555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-07 Score=78.54 Aligned_cols=194 Identities=11% Similarity=-0.003 Sum_probs=144.7
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 004922 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (723)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (723)
-...+.....+.+.|+...|..-+++.++.. |.....|..+...|...|..+.|.+.|++. |.+..+.|+....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 3445555666777999999999999999877 888888999999999999999999888774 7788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh--hhcCChHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~ 307 (723)
+|..|++++|.+.|+.....-.-+ ...+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.. ...|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 999999999999999988642212 3567888888888899999999999988776321 1122222222 33467777
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
|...++.....+. ++..+.-..|..-...|+-+.+.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777766664 6666666667777777777777666555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-06 Score=77.20 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=213.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-...+...+..+|++.+|+..|..+++. +|+.|......... |...|+-.-|+.=|.+.++ +.||.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~------yLAmGksk~al~Dl~rVle--lKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATV------YLAMGKSKAALQDLSRVLE--LKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHH------HhhhcCCccchhhHHHHHh--cCccH--
Confidence 445567788889999999999999999888 89988766555444 8899999999999999997 67753
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
+..-+.-...+.++|.+++|..-|+.+++.. |..-. ..+|..-+... ......-..+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~--------------~~eaqskl~~~-~e~~~l~~ql~s 164 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL--------------VLEAQSKLALI-QEHWVLVQQLKS 164 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch--------------hHHHHHHHHhH-HHHHHHHHHHHH
Confidence 2333333333455899999999999988766 32211 11111100000 001223334555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH-HHhhhcCChHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFT 308 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~a 308 (723)
+.-.|+...|+.....+.+ +.| |...|..-..+|...|.+..|+.-++..-+..-......|.. -+....|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6677999999999999988 344 778888888999999999999888877765532222222221 122233666666
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+...++-.+. .||.-.+-. .| ..+.+..+.++.|.+ ..+.++|.+++.-.+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~---~Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFP---FY---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHH---HH---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 6666666654 344322211 11 112222223333322 4456677788888888
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 389 MLSAGVTPNTIT---WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 389 m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.++..+...... +..+-.++...+++.+|++.-.+.++-. +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777654422333 4455667778889999998888887652 3347788888889988889999999998877643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-07 Score=89.57 Aligned_cols=193 Identities=13% Similarity=-0.020 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHh
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGI 268 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 268 (723)
+..++..+...|+.++|...|+.. |++..+|+.+...+...|++++|...|+...+. .| +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334444444444444444443332 444556666666666666666666666666653 23 34555666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCccc-HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 347 (723)
.|++++|.+.|+...+...... ...|..+ ....++.++|.+.|.+..... .++...+ . ......|+...+ +.+
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~l-~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWLYL-AESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLM 218 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHH
Confidence 6666666666666665422110 1111111 112245666666665443221 2222111 1 222234444333 233
Q ss_pred HHHHhhhhcC-Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 348 GEVKHLEAKG-VL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 348 ~~~~~~~~~g-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
..+....... .+ +.....|..+...+.+.|++++|...|++....++
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332100000 01 11234566666677777777777777777776653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-07 Score=87.24 Aligned_cols=202 Identities=10% Similarity=-0.035 Sum_probs=138.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH--h
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--N 299 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~ 299 (723)
..|..+...|.+.|++++|...|++..+..+ .+...|+.+...+...|++++|.+.|+...+.... +...|..+- .
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5688888999999999999999999988532 36889999999999999999999999999876322 233333333 3
Q ss_pred hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~ 379 (723)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+. ....|++
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHH--HHHccCC
Confidence 35589999999999998764 44332233333445677899999999765431 22333222 222 2334554
Q ss_pred HHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 380 QMALKVKEDMLSA---GV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 380 ~~a~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.++ +.+..+.+. .+ . ....+|..+...+.+.|++++|...|++..+.. +||..-+.
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 443 344444421 11 1 123578899999999999999999999999875 33444333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-07 Score=83.16 Aligned_cols=299 Identities=12% Similarity=0.066 Sum_probs=184.5
Q ss_pred cccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchH
Q 004922 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (723)
Q Consensus 53 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A 132 (723)
..+.+.+..++..||++ ..++-.-+..|...|+-+.|+.-+++.++. .|+.....+-.+.+ +.++|.++.|
T Consensus 55 sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v------llK~Gele~A 125 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV------LLKQGELEQA 125 (504)
T ss_pred HHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh------hhhcccHHHH
Confidence 34445577789999999 777778889999999999999999999999 88877666665555 7899999999
Q ss_pred HHHHHHHhhcCCCcccccccchhhhh---------HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc
Q 004922 133 VGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 133 ~~~~~~~~~~~~~p~~~~~~~~~~~l---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (723)
..=|+.++.. .|+.-......+-+ ..-.......|+...|+..+..+++. .|.+...+..-...|..
T Consensus 126 ~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 126 EADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHh
Confidence 9999999974 44332222222111 11122233367888888888887763 47777777777777777
Q ss_pred CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
.|++..|+.-.+.+ .++...+..+-..+-..|+.+.++....+..+. .||...+... |-+ +.+....+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKk---lkKv~K~l 273 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKK---LKKVVKSL 273 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHH---HHHHHHHH
Confidence 77777776655443 334566666777777777777777777777663 3443322111 111 12222222
Q ss_pred HHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHHHcCChHHHHHHHHHHHhhhhc
Q 004922 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (723)
Q Consensus 280 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 356 (723)
+.|.+. ...+++..+++..+...+......... +..+-.++...+++.+|++...++..
T Consensus 274 es~e~~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---- 335 (504)
T KOG0624|consen 274 ESAEQA--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---- 335 (504)
T ss_pred HHHHHH--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----
Confidence 222211 011344455555555554432212222 22333455556667777777666665
Q ss_pred CCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 357 GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 357 g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
+.|| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 336 --~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 --IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred --cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2333 556666666676666777777777666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-05 Score=78.75 Aligned_cols=495 Identities=12% Similarity=0.084 Sum_probs=257.8
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
-.+.|.+++|+.+|++..... .++-+ |..+|.+++|+++-+.--+..+.. ++-.+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D----------LlNKl------yQs~g~w~eA~eiAE~~DRiHLr~-------Tyy~yA~ 866 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD----------LLNKL------YQSQGMWSEAFEIAETKDRIHLRN-------TYYNYAK 866 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH----------HHHHH------HHhcccHHHHHHHHhhccceehhh-------hHHHHHH
Confidence 345677888888888776541 12223 678899999998876443322221 2222233
Q ss_pred HHHHhhccchHHHHHHHHHHHH----------hcCC--------CCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcc
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLE----------EFRL--------PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~----------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (723)
.+-..++.+.|++.|++.. .... ...+...|.--++.+...|+.+.|+.+|..+.+
T Consensus 867 ---~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 867 ---YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ---HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 3334788999998887532 1110 022345566667788889999999999887644
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C------CcccHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--N------VTLNIYVF 294 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g------~~~~~~~~ 294 (723)
|.+++...|-.|+.++|-++-++- -|..+...+.+.|-..|++.+|...|.+...- . -..+...+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888899999999999998876652 46778888999999999999999998765321 0 01123334
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh------hhhcCCccccHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYST 368 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~------~~~~g~~~~~~~~~~~ 368 (723)
|..+..-..+.-.|-+.|++.-. . +...+-.|-+.|.+.+|+++--.-.+ +.++-....|....+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 43333333345555556655421 1 22344567788888888775322111 0001001235556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNILLQAC 443 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~~~~ll~~~ 443 (723)
-...++...+++.|..++-...+ |.--+..| +..++.-..++-+.|--. .-.|+.. ....+.+.|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 66667777777777777655432 22233322 222222222222333211 1133333 344555677
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCC-----C---CccccccccCCCcCH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-----S---HYSSFDKRFSFKPTT 515 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~p~~ 515 (723)
.+.|.+..|-+-|...-.+- ..+....+...+....++.+ + -...+++......|+
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdKl----------------~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~p 1219 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDKL----------------SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNP 1219 (1416)
T ss_pred HhccchHHHHHHHhhhhhHH----------------HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccCh
Confidence 77777777666554321110 00000000000000001100 0 001223334455666
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (723)
Q Consensus 516 ~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (723)
.+.--++..|.+ .++..-.+|+....-.+. ...+|.- ..|-+++|-+.+.++..++. ....|+.|-.-.
T Consensus 1220 q~mK~I~tFYTKgqafd~LanFY~~cAqiEie-e~q~ydK------a~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~ 1290 (1416)
T KOG3617|consen 1220 QTMKDIETFYTKGQAFDHLANFYKSCAQIEIE-ELQTYDK------AMGALEEAAKCLLKAEQKNM--STTGLDALQEDL 1290 (1416)
T ss_pred HHHhhhHhhhhcchhHHHHHHHHHHHHHhhHH-HHhhhhH------HhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHH
Confidence 666666666653 223222222222110000 0011111 13456666677766665431 222333333222
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 004922 594 VRS-----------KRLKQAFSLFEEMKHYQIQP----NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (723)
Q Consensus 594 ~~~-----------g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~ 657 (723)
... .+..+.++-...|.....-| -...|..+|..+....++..|-+ .+.+|.++-...|..
T Consensus 1291 a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyR---al~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYR---ALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHH---HHHHHhhcCCccchh
Confidence 222 23333444444454433333 35678888999998888777544 566777765554433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00025 Score=73.85 Aligned_cols=404 Identities=10% Similarity=0.058 Sum_probs=239.4
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
..+..+|..|.-+..+.|+++.+-+.|++.... ..-....|+.+...|...|.-..|+.+++.-......|+..+--.+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456678888999999999999999999997753 2235667888888899999999999999887665433433332222
Q ss_pred -HhhhcC---ChHHHHHHHHHHHH--cC--CCcChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHhhhhcCC
Q 004922 298 -MNVNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGV 358 (723)
Q Consensus 298 -l~~~~~---~~~~a~~~~~~m~~--~g--~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~~~~~~~~g~ 358 (723)
-..|.+ ..+++++.-.+... .+ -...+..|..+.-+|... ....++.+.+++..+. +.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d~ 475 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---DP 475 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---CC
Confidence 223443 33444333333333 11 123344555555555422 1234566677777653 22
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 004922 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCN 437 (723)
Q Consensus 359 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 437 (723)
-.|++..|.++= |+..++++.|++..++.++.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-....
T Consensus 476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~ 551 (799)
T KOG4162|consen 476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMD 551 (799)
T ss_pred CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhch
Confidence 345555555544 7788899999999999999866778999999999999999999999999877654 21 111111
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhc-----------------cccc----CCcCCC--chhhhhhhhhhccccccCCC
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKT-----------------QVAL----GEDYDG--NTDRISNMEHKDKQSITNTP 494 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~-----------------~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~ 494 (723)
.-+..-...++.+++.+....+..--. .... ....+. ....+........
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~------- 624 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL------- 624 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-------
Confidence 111122234555555544443332111 0000 000000 0000000000000
Q ss_pred CCcCCCCccccccccCCCcCHH-H-------HHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 004922 495 NFVPNSHYSSFDKRFSFKPTTT-T-------YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (723)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~-~-------~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 564 (723)
........+..+.+.|+.. + |......+. ++.+++...+.+..+. ..-....|......+...|+.
T Consensus 625 ---~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 ---KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ---hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 0000001112222222221 1 111111222 2455666555555543 123455677667777888999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004922 565 EGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (723)
Q Consensus 565 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~ 641 (723)
.+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.|+.+.|..++
T Consensus 701 ~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999988887 4565 5678888899999998877777 888888753 237899999999999999988766654
Q ss_pred HH
Q 004922 642 AV 643 (723)
Q Consensus 642 ~~ 643 (723)
..
T Consensus 778 ~a 779 (799)
T KOG4162|consen 778 QA 779 (799)
T ss_pred HH
Confidence 44
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-05 Score=76.76 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=246.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...|..|.-++...|++..+...|++...... .. ...+......+...|.-..|+.+++........|++.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~- 393 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----GE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI- 393 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc-
Confidence 56778888888889999999999988755421 11 2223445556788999999999998877643335332
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC-CCCc--ccccHHHHHHHHhc----CCC-------hHHHHHHhhh
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVN----KPD-------VNLAIRYACI 216 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~----~~~-------~~~A~~~~~~ 216 (723)
..+-+..+.|.. +-+.+++++++-.+++... .... ....+..++-+|.. ... ..++++.++.
T Consensus 394 --s~~Lmasklc~e--~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 394 --SVLLMASKLCIE--RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred --hHHHHHHHHHHh--chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 222222233332 4678888888877776521 1111 11223333333322 111 1233344444
Q ss_pred C----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCc---
Q 004922 217 V----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVT--- 288 (723)
Q Consensus 217 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~--- 288 (723)
. |.|+.+...+.--|+-.++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 2 67778888888889999999999999999998766678899999999999999999999999887654 210
Q ss_pred ---------------ccHHHHHHHHhhhc-------------------C------ChHHHHHHHHHH--------HHcC-
Q 004922 289 ---------------LNIYVFNSLMNVNA-------------------H------DLKFTLEVYKNM--------QKLG- 319 (723)
Q Consensus 289 ---------------~~~~~~~~ll~~~~-------------------~------~~~~a~~~~~~m--------~~~g- 319 (723)
--..|+..++..+. | +..++.+....+ ...|
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 00122222222211 0 111111111111 1111
Q ss_pred --------CCcCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 320 --------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 320 --------~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
..|.+ ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 01111 12334455667778888888777777653 4556667777778888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+.|......++. ++...+++...+.+.|+...|.. ++.++.+.+ +.+...|-.+...+-+.|+.++|.+.|.....
T Consensus 705 ~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999876544 56788999999999999888888 999999886 66888999999999999999999999987654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00045 Score=73.16 Aligned_cols=220 Identities=12% Similarity=0.127 Sum_probs=143.5
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
....++++.|.+..++.++. .|+.......-+. .+.+.|+.++|..+++.... ..++ +..++..+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaL------sl~r~gk~~ea~~~Le~~~~--~~~~---D~~tLq~l~~ 85 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALYAKVLKAL------SLFRLGKGDEALKLLEALYG--LKGT---DDLTLQFLQN 85 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHH------HHHHhcCchhHHHHHhhhcc--CCCC---chHHHHHHHH
Confidence 34578999999999999999 4544322222111 25799999999999887775 4443 3356666665
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
.+.. .+..++|..+++++.+.. |. ......+-.++.+.+++. .|.+++..+|.++..+-++++.+.....
T Consensus 86 ~y~d---~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 86 VYRD---LGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHH---HhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence 4444 899999999999998765 65 566666777777777664 5677889899998888887777665421
Q ss_pred ----------HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCcccHHHHHHHHhh--hc
Q 004922 237 ----------LVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--NA 302 (723)
Q Consensus 237 ----------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~ll~~--~~ 302 (723)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ...+.-...+...-+--+.. ..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 234666777776654 11122222222334567788999999993 33333222233333333332 33
Q ss_pred CChHHHHHHHHHHHHcC
Q 004922 303 HDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g 319 (723)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 67777777777777766
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00026 Score=73.86 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=183.0
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---------CCccccc
Q 004922 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---------VAPLELF 150 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~ 150 (723)
.|...|+.+.|....+..... .++.++.+.+.+..+.+-|.-.+..|.... -.|+.
T Consensus 737 fyvtiG~MD~AfksI~~IkS~-------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-- 801 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD-------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-- 801 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh-------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--
Confidence 456678888887665544322 233556666778888887777766554321 11211
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC--CcchHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNFV 228 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l~ 228 (723)
.. ++.+.-..+.|..++|..+|++-.. +..+-+.|...|.+++|.++.+.-.. -..+|+.-.
T Consensus 802 ~e------akvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 802 DE------AKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred hh------hHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 11 1222222347999999999998665 33456778889999999998765432 236788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----------cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 229 REFGKKRDLVSALRAYDASKK----------HL---------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
..+..+++.+.|++.|++... .. -..|...|......+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 888888999999988876421 11 012344455555555566777777777765542
Q ss_pred cHHHHHHHHh--hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc----cccH
Q 004922 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL----KLDV 363 (723)
Q Consensus 290 ~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~----~~~~ 363 (723)
|-++++ ++.|+.++|-++-++- .|....-.|.+.|-..|++.+|...|-+.......-.+ ..+.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334444 3447777776665542 35555556778888888888888877766542100000 0011
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcC--CCCCH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------EMLQAG--CEPNS 433 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~--~~~~~ 433 (723)
..+|..+ .....+.-.|-++|++. |.. +..-+..|-+.|.+.+|+++-= +++... -..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1111110 11222233333344332 111 1222334566666666665421 112222 23466
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
...+.-.+-++...++++|..++....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666677777777777777765443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=62.05 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004922 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (723)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.6e-05 Score=75.97 Aligned_cols=198 Identities=14% Similarity=0.033 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH-HH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN-SL 297 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~l 297 (723)
...+..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+. .+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34455555556666666666655555443221 1222 112222334556677777777777766552 11222222 11
Q ss_pred Hhh----hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 298 MNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 298 l~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
... ..+....+.+.+.. .....|+ ......+...+...|++++|...+++.... .+.+...+..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i 157 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHV 157 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHH
Confidence 111 12333334444433 1111222 233334455666777777777777777662 22334556667777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVT-PNT--ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~-p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
+...|++++|...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777777776654321 222 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-05 Score=70.56 Aligned_cols=186 Identities=13% Similarity=0.051 Sum_probs=130.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+.+..++.+|++++..-.+. .|... ..++++...+.. ..++..|-++++++.... |.-..+-..-.+.+-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er--~p~~r---AgLSlLgyCYY~---~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER--SPRSR---AGLSLLGYCYYR---LQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc--Cccch---HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 46788999999999887764 33222 234444443333 688999999999987654 655555556677778
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVR----EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
+.+.+..|+++...+.+++...+..++ ..-..+++..+..+.++.... -+..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888999999998888776555444332 223567888888888876642 3445555555566788999999999
Q ss_pred HHHHHhCCCcccHHHHHHHHhhhc-CChHHHHHHHHHHHHcCCC
Q 004922 279 YEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVM 321 (723)
Q Consensus 279 ~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~ 321 (723)
|+...+-|--.....||..+.-+. +++..|++...+++.+|++
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999887644444566776666554 7889999999999888754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.4e-05 Score=68.83 Aligned_cols=322 Identities=8% Similarity=-0.004 Sum_probs=147.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH---HHHhhhc
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNA 302 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~ 302 (723)
+.+..+.+..++.+|++++....++.. .+......+...|-...++..|-..|+++-.. .|...-|. +---..+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 334444445555555555554444211 13444555555555555555555555555443 22221111 1111122
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHH--HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+.+.+|+++...|.+. ++...-..-+. .....+++..+..+.++... ..+..+.+.......+.|+++
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------ENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-------CCccchhccchheeeccccHH
Confidence 3445555555554431 11111111111 11233455555555554431 123333333444445556666
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH-------------
Q 004922 381 MALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-------------PNS------------- 433 (723)
Q Consensus 381 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~------------- 433 (723)
+|.+-|....+- |.. ....|+.-+ +..+.|+++.|++...++.++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 666666555543 333 334444333 233445556666666655555431 111
Q ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 434 --QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 434 --~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
..+|.-...+.+.++.+.|.+.+-.|..... .
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE----------------------------------------------~ 273 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE----------------------------------------------E 273 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc----------------------------------------------c
Confidence 1122222334567778877777766543221 1
Q ss_pred CcCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 004922 512 KPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTA 589 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 589 (723)
..|++|...+.-.-. +++....+-+.-+..... -...||..++-.|||..-++.|-.++.+-...-.+ .+...|+.+
T Consensus 274 elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred cCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH
Confidence 345555544332222 223233333333344332 23568889999999999999999887654322111 234444433
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004922 590 IKVCVRSKRLKQAFSLFEEM 609 (723)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m 609 (723)
=...-..-..++|.+-++.+
T Consensus 353 daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 22222344566666555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-08 Score=59.94 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004922 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (723)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (723)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00027 Score=82.36 Aligned_cols=374 Identities=11% Similarity=0.065 Sum_probs=224.2
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
.+..+...|++.+|.......++..... ......+...|+++.+..+++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 4455666777777777666665543222 2233445567888887777766532111122223344455567789999
Q ss_pred HHHHHHHHHHhC--CC----cccHH----HHHHHHhhhcCChHHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCC
Q 004922 274 KSRAIYEDLRSQ--NV----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGN 339 (723)
Q Consensus 274 ~a~~~~~~m~~~--g~----~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~ 339 (723)
++...+...... .. .+... ...+.+....|+++.|...+++....-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 999999877543 10 11111 11122233558999999999887653111121 234556667788999
Q ss_pred hHHHHHHHHHHHhhhhc-CCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 004922 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~-g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~ 411 (723)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999988764322 111112234566677788999999999998887642 211 1 223445566677788
Q ss_pred CCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcc
Q 004922 412 GLVEQAMHLFEEMLQA--GCEP--NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~--~~~~--~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (723)
|++++|...+.+.... ...+ ....+..+...+...|+.+.|.+.+..........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------------------- 645 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------------------- 645 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------------------
Confidence 9999999999887653 1112 23344445667778999999999988775421100
Q ss_pred ccccCCCCCcCCCCccccccccCCCcCH-HHH---HHHHHHHhhcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 004922 488 QSITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPN---HISWTILIDACGG 560 (723)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~---~~ll~~~~~~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 560 (723)
+..... ... ........++.+.+...+........... ...+..+...+..
T Consensus 646 ----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 646 ----------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ----------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000 000 11111122466777777655443211111 1113456677888
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004922 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (723)
.|+.++|..++++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 33322 2456666678889999999999999988643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-06 Score=84.96 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=158.1
Q ss_pred CCcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccc
Q 004922 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRID 130 (723)
Q Consensus 51 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (723)
.++.+++.|..++..+|.. ..+|..|...-+.+++=..|+..++++++. +|+....+.. +...|...|.-.
T Consensus 300 ~L~~A~LafEAAVkqdP~h-aeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLma------LAVSytNeg~q~ 370 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQH-AEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMA------LAVSYTNEGLQN 370 (579)
T ss_pred CchHHHHHHHHHHhhChHH-HHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHH------HHHHHhhhhhHH
Confidence 3566777788889999999 999999999999999999999999999999 8886554444 455599999999
Q ss_pred hHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHH
Q 004922 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (723)
Q Consensus 131 ~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (723)
+|+.+|+..++. .|... .+.. -...++++.- ..+.+......+...|.
T Consensus 371 ~Al~~L~~Wi~~--~p~y~-------~l~~----a~~~~~~~~~-----------~s~~~~~~l~~i~~~fL-------- 418 (579)
T KOG1125|consen 371 QALKMLDKWIRN--KPKYV-------HLVS----AGENEDFENT-----------KSFLDSSHLAHIQELFL-------- 418 (579)
T ss_pred HHHHHHHHHHHh--Cccch-------hccc----cCccccccCC-----------cCCCCHHHHHHHHHHHH--------
Confidence 999999988774 22110 0000 0000110000 00011111111111111
Q ss_pred HHHhhhCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 211 IRYACIVP--RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 211 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
+.....| .++.+...|.-.|--.|++++|++.|+..+. +.| |...||.|...++...+.++|++.|++.++.
T Consensus 419 -eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-- 493 (579)
T KOG1125|consen 419 -EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-- 493 (579)
T ss_pred -HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--
Confidence 0011112 4567777777778888888888888888776 345 5667888888888888888888888877764
Q ss_pred cccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc-----cc
Q 004922 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-----KL 361 (723)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~-----~~ 361 (723)
.|+ +.+.-.|.-.|...|.+++|.+.|-.+..+.+.+.- .+
T Consensus 494 ---------------------------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~ 540 (579)
T KOG1125|consen 494 ---------------------------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMA 540 (579)
T ss_pred ---------------------------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcc
Confidence 333 223334666777888888888887777766544211 11
Q ss_pred cHHHHHHHHHHHHccCCHH
Q 004922 362 DVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~ 380 (723)
+...|.+|=.++.-.++.+
T Consensus 541 se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 541 SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hHHHHHHHHHHHHHcCCch
Confidence 2234555544444444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-06 Score=85.94 Aligned_cols=249 Identities=13% Similarity=0.029 Sum_probs=157.0
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004922 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (723)
.+.-+.+.|+..+|.-.|+.. |....+|.-|.......++-..|+..+.+..+... -|..+.-+|.-.|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 333444444454444444432 34445666666666666666666666666666321 2556666666667777766
Q ss_pred HHHHHHHHHHHhCCCc--------ccHHHHHHHHhhhc--CChHHHHHHHHHHHH-cCCCcChhhHHHHHHHHHHcCChH
Q 004922 273 MKSRAIYEDLRSQNVT--------LNIYVFNSLMNVNA--HDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTV 341 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~ 341 (723)
.+|+.+++.-+...++ ++...-+. .... ..+....++|-++.. .+..+|+.+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 6777666665443210 00000000 0001 123445566666644 344578888888888888899999
Q ss_pred HHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMH 419 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~ 419 (723)
+|...|+.... ++|+ ..+||.|...++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.+.+|.+
T Consensus 448 raiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 448 RAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999887 5554 557999999999999999999999999886 444 4456667778889999999988
Q ss_pred HHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 420 LFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 420 ~~~~~~~---~------~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
.|-..+. . +..++..+|..|=.++.-.++.|.+.+..
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8765543 2 12234566777666666677777555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00021 Score=83.24 Aligned_cols=233 Identities=10% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---cccH--HHHH--H
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFN--S 296 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~---~~~~--~~~~--~ 296 (723)
...+...|++++|...++.........+ ....+.+...+...|++++|...+++.....- .+.. ..+. +
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3445567777777777777654211112 12445566666777888888777777654211 0111 1111 1
Q ss_pred HHhhhcCChHHHHHHHHHHHH----cCCC--c-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (723)
.+....|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+................+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 122344777777777666543 2211 1 22334455566777899999999988876543222111123344556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILL 440 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 440 (723)
...+...|++++|.+.++......... ....+ ...+..+...|+.+.|..++........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667778889999888888775421110 10111 1112334456777777777665443211111 01123445
Q ss_pred HHHHHhCCHHHHHHHHHHhh
Q 004922 441 QACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 441 ~~~~~~g~~~~a~~l~~~~~ 460 (723)
.++...|+.++|...++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666677777777665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0015 Score=65.52 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+.++|.+.++++.+...|.+...- ..+. ..+.+....++++...+...-.++.. ..-...=...+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte------~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~F 369 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTE------HRTP-------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAF 369 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhh------hcCH-------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHH
Confidence 445666778888888888876541 1111 12333444555555555554433332 112222366777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+.|++..|+..+.++++.. +-|...|....-+|.+.|.+..|+.-.+...
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8889999999999888875 5577788888888888888888877655444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0028 Score=68.13 Aligned_cols=195 Identities=8% Similarity=-0.001 Sum_probs=97.9
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh-hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF-KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~-~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
+..+.++...+-+.+-+++++++. +.|+.+..+.-+ ++|+-.+. ..+.....++.+++-..+. .
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIv---L~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyDa--------~ 1052 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIV---LDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYDA--------P 1052 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHh---cCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCCc--------h
Confidence 445667788888999999999988 566555443333 33332222 2444555666665543331 1
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
.++..+...+-+++|..+|+++..+..+...|+.- -+..+.|.+.-++..+ ...|..+..+-.+.|...+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~n~------p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERCNE------PAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhhCC------hHHHHHHHHHHHhcCchHHH
Confidence 24555666667777777777765544444444432 2344444444333321 23445555555555555555
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHH
Q 004922 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (723)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A 343 (723)
++-|-+. .|...|.-++.... |.+++-.+.+....+..-+|... +.|+-+|++.+++.+.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHH
Confidence 5444321 23444444444322 44555444444444433333322 2344455555554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0005 Score=73.57 Aligned_cols=358 Identities=10% Similarity=-0.045 Sum_probs=211.1
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhh---HHHHhhHHHHHhHHHhhhccCccchHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK---FASMLSLEMVASGIVKSIREGRIDCVVGV 135 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (723)
|..+...|++. .......+..|++...++.|..+.-..-+. .|-. ++++. .+. .|...++...|+..
T Consensus 515 f~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~-rG~------yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 515 FDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ-RGP------YYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-ccc------cccCccchhhHHHH
Confidence 66667888888 888999999999999999999985444333 3221 22211 333 37899999999999
Q ss_pred HHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 136 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
|+...+ ..|.+. ..+..+..++. ++|++..|+++|.++...+ |.+...-+-.....+..|++.+|+..+.
T Consensus 585 fQsALR--~dPkD~---n~W~gLGeAY~---~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 585 FQSALR--TDPKDY---NLWLGLGEAYP---ESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHhc--CCchhH---HHHHHHHHHHH---hcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999997 577544 34555555444 4999999999999987755 7665555556666777899999988776
Q ss_pred hCC-----------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004922 216 IVP-----------RADILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 216 ~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
..- .-..++-.+...+...|-...|...++.-++. ....+...|-.+. .|..
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~ 724 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACY 724 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHH
Confidence 631 11123333333444445555555555554331 1111222222222 2233
Q ss_pred HHHHHHhCCCcccHHHHHHHHhhhc--C---ChH---HHHHHHHHHHHcCCCcChhhHHHHHHHHHH----c----CChH
Q 004922 278 IYEDLRSQNVTLNIYVFNSLMNVNA--H---DLK---FTLEVYKNMQKLGVMADMASYNILLKACCL----A----GNTV 341 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~--~---~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~----~~~~ 341 (723)
+|-+.. -. .|+......+..-.. + +.+ .+.+.+-.-.+ ...+..+|..|...|.+ . .+..
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 333332 11 233333333332111 0 111 01111111111 12234455555544443 1 2334
Q ss_pred HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
.|...+.+..++ ...+..+|+.|.-. ...|.+.-+.-.|-+-....+. ...+|..+.-.+.+..+++.|...|
T Consensus 801 ~Ai~c~KkaV~L-----~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-----CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred HHHHHHHHHHHH-----hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHH
Confidence 677778777764 23455677776655 6667787777777776655433 6778888888888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
....... +.+...|--..-.....|+.-++..+|..
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8887653 33444444444444466777777777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-05 Score=77.53 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=118.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHhhhcC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAH 303 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~ 303 (723)
+.++|...|+++.++ .++... ..|.......+...+...++-+.++.-+++....+...+. ....+.+....|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 455666666655433 233222 2355545544444443334445555555444333222111 122222223446
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH---HHHHHHHHHccCCHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~ll~~~~~~g~~~ 380 (723)
++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+ ...|... ..+.+..+.....+.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 666666666432 3555666677788888888888888888876 2333322 222233333344678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~l~~~~ 459 (723)
+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++-+....|+. +.+.+.+..+
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888887654 45677777788888888888888888887776543 34566666677766777776 4555666655
Q ss_pred hh
Q 004922 460 TL 461 (723)
Q Consensus 460 ~~ 461 (723)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=76.28 Aligned_cols=193 Identities=8% Similarity=-0.046 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+...|++++|...+++++.. .|.... ...++..+...+...|++++|+..++++.+ ..|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCc
Confidence 667788889999999999999999999888 443221 122234455568899999999999999997 4554332
Q ss_pred ccchhhhhHHHHHHh-----hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 151 DGSGFKLLKNECQRL-----LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
....+..+...+... .+.|++++|++.|+.+.... |++...+..+...... .... .....
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~----~~~~---------~~~~~ 170 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYL----RNRL---------AGKEL 170 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHH----HHHH---------HHHHH
Confidence 111222222211110 12378999999999998765 5544333322221110 0000 01223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+...|.+.|++++|...|....+.... | ....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5777899999999999999998875321 2 3578899999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0019 Score=64.69 Aligned_cols=208 Identities=9% Similarity=0.007 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
-+++..+++.....-..-+..+|..+.+.-...- ..+....++++++..-..--..+|...+..-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3456666665554322334445544443222222 2566667777776643222234577777777788888899999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~ 534 (723)
|.+..+.+. ..-++..++++|.-+| ++..-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 988776543 1237888899999887 58888999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
+|+-=.+. ..-+..--...++-+.+.++-..|..+|++....++.|| ...|..+|.-=..-|+...+.++-+++...
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 98865543 222334445667788888999999999999998866665 468999999888899999999998887632
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC
Q 004922 613 ---QIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 613 ---g~~p~~~~~~~ll~~~~~~g~ 633 (723)
...|.-.+-..+++-|.-.+.
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccc
Confidence 123333344445555544444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=80.45 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=129.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
|.|++..++.-.+ .....-..+......+.+++...|+++.+. .++.. + -.|.......+...+....+-+
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK----S-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T----T-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc----C-CChhHHHHHHHHHHHhCccchH
Confidence 4455555554333 111111122333444566777777665433 22221 2 2455554444444333334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNTITW-SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+..-+++.......++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454444443333222222222 22233455667777777776542 35566667777788888888888877776
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh----h--cHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----T--DYYRVK 533 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~----~--~~~~a~ 533 (723)
... ..|. +...+..++. + ....|.
T Consensus 158 ~~~-------------------------------------------------~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 158 QQI-------------------------------------------------DEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HCC-------------------------------------------------SCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred Hhc-------------------------------------------------CCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 542 2222 2222333322 1 356777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 004922 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMKH 611 (723)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 611 (723)
.+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .-+..+...+|.+....|+. +.+.+++.++..
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777776554 45677788888888888888888888888876543 22456666677777777776 667777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.2e-05 Score=72.98 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
++++..++.+.+... -|..+|+....++...|+++++++.++++++..
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 455666666665322 356667766666666777777777777766653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0038 Score=64.66 Aligned_cols=266 Identities=12% Similarity=0.131 Sum_probs=152.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
...|......+-+..+++.|+..|.+--.-| +....+........+ ......+.+.|+++.|+.-|-++.-
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 3455555566666666777776665422221 011111110000000 1223334567777777766643331
Q ss_pred cccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHH
Q 004922 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (723)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (723)
++++..+......|..|+.+++-+..... ..-+|..+..-|...|+++.|+++|-.. ..++.-
T Consensus 735 ----------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~da 797 (1636)
T KOG3616|consen 735 ----------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDA 797 (1636)
T ss_pred ----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHH
Confidence 23333333346889999999988766542 3456777888899999999999988764 456778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (723)
|.+|.+.|+|++|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+-. |+... -|.-..|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~ai---qmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDKAI---QMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chHHH---HHHHhhCcchH
Confidence 8999999999999988777643 334556677777777888888888887754321 22110 01111123333
Q ss_pred HHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
.+++..+- .|+ ..|...+..-|...|++..|.+-|-+... |.+-++.|-..+.|++|.++
T Consensus 869 mirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 869 MIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHH
Confidence 33333221 122 23444556666677777777766654432 34445556666666666554
Q ss_pred H
Q 004922 386 K 386 (723)
Q Consensus 386 ~ 386 (723)
-
T Consensus 931 a 931 (1636)
T KOG3616|consen 931 A 931 (1636)
T ss_pred H
Confidence 4
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-05 Score=70.50 Aligned_cols=147 Identities=8% Similarity=0.038 Sum_probs=113.0
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHH
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (723)
-.+..|...|+++.+....+.+.. |.. . +...++.++++..++..++.. |++...|..+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~~-----~----------~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~L 79 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PLH-----Q----------FASQQTPEAQLQALQDKIRAN--PQNSEQWALL 79 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----ccc-----c----------ccCchhHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 345568899999887655533321 210 0 011577788888899888866 8899999999
Q ss_pred HHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004922 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (723)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (723)
+..+...|+++.|...++.+ |++..++..+..+ +...|+ .++|.+++++..+.+. .+..++..+...+.+.|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcC
Confidence 99999999999999888774 7778888888886 467677 5899999999888543 36778888888899999
Q ss_pred CHHHHHHHHHHHHhCC
Q 004922 271 DYMKSRAIYEDLRSQN 286 (723)
Q Consensus 271 ~~~~a~~~~~~m~~~g 286 (723)
++++|+..|+.+.+..
T Consensus 159 ~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 159 DYAQAIELWQKVLDLN 174 (198)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00011 Score=81.07 Aligned_cols=222 Identities=11% Similarity=0.039 Sum_probs=144.7
Q ss_pred CcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccch
Q 004922 52 VHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC 131 (723)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (723)
.|.++..|.+.++.+|++ ...|...++...+.++.+.|..++++++.. ++++.-..- +..+..++.....-|.-+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEK--LNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEK--LNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHH--HHHHHHHHhHHHhhCcHHH
Confidence 344555688888899999 888889999999999999999999998776 333221111 1222222233344566677
Q ss_pred HHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHH
Q 004922 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (723)
Q Consensus 132 A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (723)
..++|+++-+ +...+..+..++..|...+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|.
T Consensus 1516 l~kVFeRAcq---------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1516 LKKVFERACQ---------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHH---------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHH
Confidence 7888888876 223455566666666668889999999999886542 34455666677777777666666
Q ss_pred HHhhh----CCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 212 RYACI----VPRA--DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 212 ~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.++.. +|.. .......++.-.+.|+.+.++.+|+......+ --...|+..++.-.+.|+.+.+..+|++....
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66544 3442 23344455555666777777777777665422 23556777777777777777777777777766
Q ss_pred CCcc
Q 004922 286 NVTL 289 (723)
Q Consensus 286 g~~~ 289 (723)
++.|
T Consensus 1664 ~l~~ 1667 (1710)
T KOG1070|consen 1664 KLSI 1667 (1710)
T ss_pred CCCh
Confidence 5544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0045 Score=62.19 Aligned_cols=423 Identities=12% Similarity=0.040 Sum_probs=207.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|+++.|+.+|-..+... |.+...|+.-..+++..+++++|.+-..+ -|.=+..|+.+..++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3799999999999988755 88999999999999999999999876544 35555788999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC---CcccHHHHHHHHhhhcC---------ChHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMK---SRAIYEDLRSQN---VTLNIYVFNSLMNVNAH---------DLKF 307 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---------~~~~ 307 (723)
-|.+-++.. +.|...++-+..++.......+ --.++..+.... .......|..++..... ....
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999988743 2366677778777621100000 001111111100 00111223333332111 1111
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCCh----HHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCL-AGNT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~----~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a 382 (723)
..+....+...+.. .+...-..... .... ..............+ ..--..-...+.++..+..+++.|
T Consensus 171 ~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 171 LMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred HHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHHHHHHhhhHHHH
Confidence 11111111110000 00000000000 0000 000000000000000 001112233444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHhCCHHHHHHH
Q 004922 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-------CNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~g~~~~a~~l 455 (723)
.+.+....... -++.-++....+|...|++.+....-+...+.|.. ...- +..+-.+|.+.++.+.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 55555554433 13333344444455555444444443333333211 1111 11122244444555555555
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHH--HHHHHHHHHh-hcHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT--TYNILMKACC-TDYYRV 532 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~-~~~~~a 532 (723)
|.+.......++.. ......+...+. .....-+.|... ....-..++. +++..|
T Consensus 321 ~~kaLte~Rt~~~l-------s~lk~~Ek~~k~----------------~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL-------SKLKEAEKALKE----------------AERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHhhhhcCHHHH-------HHHHHHHHHHHH----------------HHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 55433322111000 000000000000 000000122221 1111112222 478889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..-|.++++.. +-|...|....-+|.+.|.+..|+.=.+..++. .|+ ...|.-=..++....++++|.+.|++..+
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998875 447788999999999999999999888877764 444 33344444455556678888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 004922 612 YQIQPNLVTYITLLRARSR 630 (723)
Q Consensus 612 ~g~~p~~~~~~~ll~~~~~ 630 (723)
. .|+..-+..-+.-|..
T Consensus 455 ~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 L--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred c--CchhHHHHHHHHHHHH
Confidence 4 4766665555555555
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0078 Score=64.86 Aligned_cols=373 Identities=12% Similarity=0.081 Sum_probs=172.9
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC-CcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
+...+.-.+++.. .+-+.+-++++++++-.... ......-+.++-. +-.-+.....++.+++.. .---.+...
T Consensus 984 Pe~vS~tVkAfMt---adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdn--yDa~~ia~i 1057 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMT---ADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDN--YDAPDIAEI 1057 (1666)
T ss_pred hHHHHHHHHHHHh---cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhcc--CCchhHHHH
Confidence 3445555565555 67777778888777643211 1111111111111 111222223333333211 111123334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a 308 (723)
....+-+++|..+|+... .+..+.+.|+. .-+..++|.+.-++.. ....|..+-.+ ..+...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 444555666666665532 34444444443 2345555555444332 12334444333 22344444
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
.+-|=+ ..|+..|.-+++...+.|.+++-.+.+...++. . -.| ..=+.|+-+|++.++..+.++...
T Consensus 1124 ieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~-~E~--~id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1124 IESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---V-REP--YIDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred HHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---h-cCc--cchHHHHHHHHHhchHHHHHHHhc-
Confidence 443322 135555666666666666666666655554441 1 112 223455555666666555444331
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhccccc
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~ 468 (723)
.|+......+.+-|...+.++.|.-+|.... -|..+...+...|++..|.+.-++
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK---------- 1245 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK---------- 1245 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 3455555555666666666666555554332 244455555555666555554433
Q ss_pred CCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCH
Q 004922 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH 548 (723)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~ 548 (723)
.-+..||-.+-.+|....+ --+-+|-..++-...
T Consensus 1246 -------------------------------------------Ans~ktWK~VcfaCvd~~E---FrlAQiCGL~iivha 1279 (1666)
T KOG0985|consen 1246 -------------------------------------------ANSTKTWKEVCFACVDKEE---FRLAQICGLNIIVHA 1279 (1666)
T ss_pred -------------------------------------------ccchhHHHHHHHHHhchhh---hhHHHhcCceEEEeh
Confidence 2334555555555542111 001122222222334
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 628 (723)
.-..-++..|-..|-+++-+.+++...... +...-.|+.|.-.|.+- ++++..+-++-. .+..-.-.+++++
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LF------wsRvNipKviRA~ 1351 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLF------WSRVNIPKVIRAA 1351 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH------HHhcchHHHHHHH
Confidence 445667777777888887777776654211 12334566665555543 333333322222 1222234566776
Q ss_pred HhcCChHH
Q 004922 629 SRYGSLHE 636 (723)
Q Consensus 629 ~~~g~~~~ 636 (723)
-...-|.+
T Consensus 1352 eqahlW~E 1359 (1666)
T KOG0985|consen 1352 EQAHLWSE 1359 (1666)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0005 Score=71.21 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=178.5
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+|-...-..+...+...|-..+|..+|++. ..|..+|.+|+..|+.++|..+..+..+. +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333344556777888899999999999875 45788899999999999999999888874 8899999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHH
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (723)
.+.....--+++|.++.+....... ..++
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~---------------------------------------------------r~~~ 492 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQ---------------------------------------------------RSLA 492 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHH---------------------------------------------------Hhhc
Confidence 9887777778888888876543210 0000
Q ss_pred HHHHHH-hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004922 520 ILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSK 597 (723)
Q Consensus 520 ~ll~~~-~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 597 (723)
-. .+ .++++++.+-|+.-.+.. +--..+|-.+..+..+.++++.|.+.|..... +.|| ...||.+-.+|.+.|
T Consensus 493 ~~--~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 493 LL--ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred cc--cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHh
Confidence 00 11 135667777776665532 12456777777888889999999999988886 3666 568999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhh
Q 004922 598 RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVI 671 (723)
Q Consensus 598 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~ 671 (723)
+..+|...+++..+.. .-+...|.-.+....+.|.+++|.+|..-+-.|.+.+- |......++....++..
T Consensus 568 ~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~--d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK--DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc--cchhhHHHHHHHHhhcc
Confidence 9999999999998876 55667777778888889998887776555555555554 66666777777766444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=66.29 Aligned_cols=168 Identities=11% Similarity=-0.007 Sum_probs=118.5
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
+-|.+..+ ..+...+...|+-+....+....... .+.|....+..+....+.|++.+|...|++.....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--------- 130 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--------- 130 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---------
Confidence 33555555 55666666777777776666664432 22355566667777777777777777777766431
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
++|...|+.+.-+|.+.|+++.|..-|.+..++ ..-+...++.+.-.|.-
T Consensus 131 -------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L 180 (257)
T COG5010 131 -------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLL 180 (257)
T ss_pred -------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHH
Confidence 677888888888888888888888888888774 23345567777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.|+++.|..++......+.. |...-..+.......|++++|..+...-.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 88888888888888766543 66777777778888888888887776544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00021 Score=78.30 Aligned_cols=237 Identities=9% Similarity=0.044 Sum_probs=146.5
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
.+|+. ...+..|+..+...|++++|.++++..++. .|+.....+..+.+ +.+.+++.++..+ .+.. +
T Consensus 26 ~~p~n-~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv--~~l~--~ 92 (906)
T PRK14720 26 YSLSK-FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL--NLID--S 92 (906)
T ss_pred CCcch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh--hhhh--h
Confidence 44666 888889999999999999999999988877 66655444444333 6677776665555 3332 1
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchH
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (723)
.+. ..++.-...+...+... +.+..++
T Consensus 93 ~~~--------------------~~~~~~ve~~~~~i~~~---------------------------------~~~k~Al 119 (906)
T PRK14720 93 FSQ--------------------NLKWAIVEHICDKILLY---------------------------------GENKLAL 119 (906)
T ss_pred ccc--------------------ccchhHHHHHHHHHHhh---------------------------------hhhhHHH
Confidence 111 22332222233333321 2233566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHHHHHHh
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMN 299 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~ll~ 299 (723)
..++.+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|+.. ++++|.+++.+.+..-+. .=...|.-++.
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence 777778888888888888888887755 24677788888888777 888888887777654210 01122333333
Q ss_pred hhcCChHHHHHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 300 VNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
.-..+++.-.++.+.+... |..--..++--+-..|-..++++++..+++.+... -+.|.....-++.+|.
T Consensus 198 ~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-----~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 198 YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH-----DNKNNKAREELIRFYK 268 (906)
T ss_pred cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-----CCcchhhHHHHHHHHH
Confidence 3334555555555555543 33334455666667777888899999999988873 2335556666666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00033 Score=72.51 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
-..++..+...|-...|..+|++. ..|..++..|+..|+..+|..+..+-.+ -+|+...|..+.+......-++
T Consensus 401 q~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 344566667777777777777664 5577777777777777777777666555 2467777777777666666677
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004922 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 353 (723)
+|.++++..-.. ..-+-...-...+++.++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|.....
T Consensus 475 kawElsn~~sar-----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHHHhhhhhHH-----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 777777654332 01111111111356667777776665543 34455666666666677777777777777665
Q ss_pred hhcCCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 354 EAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 354 ~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
..||. ..||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 548 -----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 -----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34444 36777777777777777777777777776633 555566666666777777777777776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.9e-05 Score=81.74 Aligned_cols=115 Identities=3% Similarity=-0.098 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|+.+++.+.+.. |+.......++..+.+.+++++|...+++ .|++....+.+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 444444444444444433 44444444444444444444444443333 255556666677777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|+++...+ +-+..++..+...+.+.|+.++|...|+...+.
T Consensus 177 y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 177 FERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777622 124666777777777777777777777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00053 Score=75.99 Aligned_cols=226 Identities=10% Similarity=0.023 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
+...|-..|......++.++|.++++++..- +.+. ...|.++++.-..-|.-+...++|++..+.. . .
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~ 1529 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-A 1529 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-h
Confidence 3455666666666777777777777666541 1111 1245555555555566666666666666531 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchh
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
-..|..|...|.+.+++++|.++++.|.+.- .-...+|...++.+.+.++-+.|..++.+....-
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-------------- 1594 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-------------- 1594 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--------------
Confidence 2345666666666667777777777666642 2455566666666666666666666665544321
Q ss_pred hhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 557 (723)
|.. -......-.+..
T Consensus 1595 -----------------------------------Pk~------------------------------eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1595 -----------------------------------PKQ------------------------------EHVEFISKFAQL 1609 (1710)
T ss_pred -----------------------------------chh------------------------------hhHHHHHHHHHH
Confidence 000 011222333344
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChH
Q 004922 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLH 635 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~ 635 (723)
-.+.|+.+.+..+|+.....- +.-...|+..|+.=.++|+.+.+..+|++....++.|- ...|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 456666666666666665431 11345666666666666666666666666666655552 344555555444555543
Q ss_pred H
Q 004922 636 E 636 (723)
Q Consensus 636 ~ 636 (723)
.
T Consensus 1689 ~ 1689 (1710)
T KOG1070|consen 1689 N 1689 (1710)
T ss_pred h
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.002 Score=63.43 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=73.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
..+...+..++|+.+..++.. +.|+. ..|+..-.++...| ++++++..++++.....+ +..+|+.....+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 334445566677777777665 23333 34555555555555 467777777777766544 4455655544455
Q ss_pred hcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 410 NAGLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 410 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+.|+. ++++.+++++.+.. +-+..+|+....++.+.|+++++++.+.++.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55542 55666666666553 446666776666666777777777777776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00099 Score=73.21 Aligned_cols=167 Identities=10% Similarity=0.093 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 333 (723)
+...+..|+..|...+++++|.++.+...+... .+....+..++....++.+.+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 455666677766677777777777665554411 123333333333333332222111 33444
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
.....++.-...+...+.. ..-+...+-.+..+|-+.|+.+++.++|+++++..+. |..+.|.+...|+.. +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 4444444444444444444 3345556777778888888888888888888877644 777888888888887 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+++|.+++.+.... +....++..+.++|.++..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 88888887776543 5556677777777777654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=59.89 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC----h-HHHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGS----L-HEVQQCLAVYQDMWKAGYKANDTYL 659 (723)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~----~-~~a~~a~~~~~~m~~~g~~p~~~~~ 659 (723)
-...|..|...|++.....+|+.+++.|+ -|+..+|+.++.+.++..- . .+.-+.+.+|++|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 8999999999988876542 1 1456678899999999999999999
Q ss_pred HHHHHHHHhhhh
Q 004922 660 KELIEEWCEGVI 671 (723)
Q Consensus 660 ~~li~~~~~g~~ 671 (723)
+.++..+.+|.+
T Consensus 108 nivl~~LlkgSi 119 (120)
T PF08579_consen 108 NIVLGSLLKGSI 119 (120)
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=68.10 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..++..+...|++++|...|+++...... |. ..++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 466778888899999999999999998874321 11 246778888899999999999999998875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-05 Score=67.66 Aligned_cols=119 Identities=5% Similarity=-0.096 Sum_probs=72.1
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHH
Q 004922 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (723)
Q Consensus 60 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 139 (723)
.+++..+|+. +..+...+...|++++|...|+.++.. +|.....+.. +...+...|++++|+..|+++
T Consensus 17 ~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 17 KQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIA------LAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHH------HHHHHHHHhhHHHHHHHHHHH
Confidence 3446666665 334566777778888888888877777 5554443333 333367778888888888877
Q ss_pred hhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHH
Q 004922 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (723)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (723)
.+ +.|+.. .. +.+....+...|++++|+..|+..+... |+++..+...+.+
T Consensus 85 l~--l~p~~~---~a---~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~ 135 (144)
T PRK15359 85 LM--LDASHP---EP---VYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQNA 135 (144)
T ss_pred Hh--cCCCCc---HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 76 455332 22 2222223334678888888887777644 6665555544443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00089 Score=72.84 Aligned_cols=134 Identities=11% Similarity=-0.026 Sum_probs=102.0
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 399 (723)
..++..+-.|.......|.+++|..+++...+ +.||. .....+...+.+.+++++|+..+++.+...+. +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 44577777788888888888888888888877 44554 45677777888888888888888888877544 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
....+..++.+.|++++|..+|+++...+ +-+..++..+-.++.+.|+.++|...|+...+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777778888888888888888888742 344677777778888888888888888876653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00051 Score=62.64 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHH-HccCC--HH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~-~~~g~--~~ 380 (723)
+.+++...+....+.+ +.|...|..+...|...|++++|...|++...+ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4455566666665554 567888999999999999999999999999873 234566777777764 66676 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (723)
+|.+++++..+.++. +..++..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999988765 77888899999999999999999999998874 4444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00064 Score=61.73 Aligned_cols=243 Identities=12% Similarity=0.062 Sum_probs=126.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCCHHHHHH-HHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSALR-AYD 245 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~-~~~ 245 (723)
.|.+..++..-.... ..+.....-..+.++|...|.+..-..-......++ .+...+......-++.++-+. +.+
T Consensus 21 ~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 366665555443322 222445555566677776666543332221111111 112222222333344333333 333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChh
Q 004922 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~ 325 (723)
.+.......+......-...|...|++++|++.... |-..+....+.-+.....+.+.|.+.+++|.+. .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 444332223333333334457777888888777765 223344444444444555667777777777653 2444
Q ss_pred hHHHHHHHHH----HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 326 SYNILLKACC----LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 326 ~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
+.+.|..++. ..+.+.+|.-+|+++.+. ..|+..+.+-...++...|++++|..+++..+..... +..+.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 5554444444 334567777777777541 4567777777777777777777777777777766544 45555
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHH
Q 004922 402 SSLINACANAGLVEQ-AMHLFEEMLQ 426 (723)
Q Consensus 402 ~~li~~~~~~g~~~~-a~~~~~~~~~ 426 (723)
..++-+-...|...+ ..+.+.++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555544444444333 3344455444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00035 Score=63.44 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=119.3
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
-..+...|+-+....+...... ..|... .....+++... ..|++.+|+..|++..... |++...|+.++.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~---~ll~~~gk~~~---~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lga 142 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDR---ELLAAQGKNQI---RNGNFGEAVSVLRKAARLA--PTDWEAWNLLGA 142 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccH---HHHHHHHHHHH---HhcchHHHHHHHHHHhccC--CCChhhhhHHHH
Confidence 3345677888887777766543 233221 23333444433 3899999999999998755 999999999999
Q ss_pred HHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
+|.+.|+.++|...|.+ .+.++...++|.-.|.-.|+++.|..++......+. -|..+-..+..+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 99999999999887665 588889999999999999999999999998877532 3677788888888999999999
Q ss_pred HHHHHHHHhC
Q 004922 276 RAIYEDLRSQ 285 (723)
Q Consensus 276 ~~~~~~m~~~ 285 (723)
..+...-...
T Consensus 222 ~~i~~~e~~~ 231 (257)
T COG5010 222 EDIAVQELLS 231 (257)
T ss_pred Hhhccccccc
Confidence 9887765443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=51.83 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (723)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00042 Score=62.39 Aligned_cols=183 Identities=15% Similarity=0.079 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHHHHhc----CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 85 GRLEEFAMIVESVVVSE----GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 85 g~~~~A~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
.+.++..++...++... ..|+.| ..+..++.+....|+.+.|..+++.+... . |...-...+..++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w------~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~-- 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIW------TLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAML-- 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHH------HHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHH--
Confidence 45567777777665542 233333 33456667778899999999999998874 3 5433222222233
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH----hhhCCCCcchHHHHHHHHHhcCC
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
+-..|++++|+++++.++..+ |.+...+-.-+.....+|+.-+|++. .+.++.|..+|..+...|...|+
T Consensus 96 ----lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 96 ----LEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred ----HHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 333799999999999999866 77777777777777778888788764 56688899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 285 (723)
+++|.-.++++.- +.| +...+..+...+...| +..-+...|.+..+.
T Consensus 170 f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 170 FEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999875 345 4444555555543333 556677777777765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0027 Score=57.82 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..+++...... .-++.+..-++-.....|+.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 455555555555442 24455555555555555555555555555555432 22344444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-06 Score=50.23 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (723)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55556666666666666666666665555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00027 Score=60.78 Aligned_cols=109 Identities=9% Similarity=-0.036 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
..+|++..+. .|+ .+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555543 233 3555677888899999999999988763 234667888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
....++. +...+..+..++.+.|++++|...|+...+.
T Consensus 84 Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9987543 7788888899999999999999999998876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=49.25 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 581 (723)
.+|+.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=49.42 Aligned_cols=35 Identities=43% Similarity=0.716 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (723)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00034 Score=69.18 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|.+++|+..++.+++.. |+++.++...+..+...++.++|.+.++++ |.......++..+|.+.|++.+|++
T Consensus 318 ~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3588888888888877755 888888888888888889988888887774 6667777888888888999998888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHc
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (723)
+++...... +-|...|..|..+|...|+..++.....+... +.|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------------hCCCHHHHHHHHHHHHHh
Confidence 888877653 34778888888999888888888877766543 357777777777777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.03 Score=56.50 Aligned_cols=75 Identities=7% Similarity=0.087 Sum_probs=50.4
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+..+|+.+++-+..+ ..++....++. +|..+.+|..-+..-.+..+++...++|.+....- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67777777777766555 66666655554 46667777777777777788888888887776532 3555666666
Q ss_pred HH
Q 004922 264 DV 265 (723)
Q Consensus 264 ~~ 265 (723)
..
T Consensus 94 ~Y 95 (656)
T KOG1914|consen 94 SY 95 (656)
T ss_pred HH
Confidence 53
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.05 Score=58.45 Aligned_cols=467 Identities=11% Similarity=0.095 Sum_probs=257.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.+++..|.....++.+.. |+....-..-+-...+.|+.++|..+++.. +.+..+...+-..|.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 689999999999988766 544333333333466899999999887764 44668888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc----C--------ChHHHHHH
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFTLEV 311 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----~--------~~~~a~~~ 311 (723)
|++.... -|+......+..+|.+.+.+.+-.+.--+|-+. ++-+.+.|-++++... + -...|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998874 467777777777888888776544444444332 2234455444444321 1 13457778
Q ss_pred HHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 312 YKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 312 ~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
++.+.+.+ ..-+..-....+..+...|++++|.+++..-.. .-....+...-+.-+..+...++|.+..++-.++.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la---~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA---EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88887654 222333333445566678999999998843221 11123344455667788889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HhCCHHH
Q 004922 391 SAGVTPNTITWSSLINACAN----------------AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV---EACQFDR 451 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~ 451 (723)
..|.. | |...+..+++ .+..+...+...+..... ....|-+-+.++. ..|+.++
T Consensus 254 ~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 254 EKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHH
Confidence 87643 3 3333332221 122222333333222221 1112333333333 3466666
Q ss_pred HHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc-ccCCCcCH---------HHHHHH
Q 004922 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK-RFSFKPTT---------TTYNIL 521 (723)
Q Consensus 452 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~---------~~~~~l 521 (723)
+.-.|-+-- +..+....+.......+..... ..++. ..+..++. ++.+..
T Consensus 327 ~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~------------------~~l~~~l~~~~~~~s~~~k~l~~h~c~l~ 386 (932)
T KOG2053|consen 327 MLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQL------------------KSLMSKLVLADDDSSGDEKVLQQHLCVLL 386 (932)
T ss_pred HHHHHHHHh--CCCcHhHhhHHHhhccCCHHHH------------------HHHHHHhhccCCcchhhHHHHHHHHHHHH
Confidence 544432211 1111000000000000000000 00000 00011221 223333
Q ss_pred HHHHhh-----cHHHHHHHHHHHH---HcC------CCCCHHH---------HHHHHHHHHcCCCHH---HHHHHHHHHH
Q 004922 522 MKACCT-----DYYRVKALMNEMR---TVG------LSPNHIS---------WTILIDACGGSGNVE---GALQILKIMR 575 (723)
Q Consensus 522 l~~~~~-----~~~~a~~l~~~m~---~~~------~~p~~~~---------~~~li~~~~~~g~~~---~A~~~~~~m~ 575 (723)
+...++ +.+....++.+.. +.| +-|+..+ -+.|++.|-+.++.. +|+-+++.-.
T Consensus 387 ~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl 466 (932)
T KOG2053|consen 387 LLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL 466 (932)
T ss_pred HHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 333333 1233333332222 223 3334333 367888888888765 4555555544
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCC
Q 004922 576 EDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (723)
Q Consensus 576 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p 654 (723)
.. .|. ..+=-.+|..|+..|-+..|.++|+.|--..|+-|..-|..+ +-+.-.|++..+...+.-.-.+-....
T Consensus 467 t~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy~~~~-- 541 (932)
T KOG2053|consen 467 TK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFYDSSL-- 541 (932)
T ss_pred hc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHHhhhh--
Confidence 43 333 334456778999999999999999999876777776666543 445567777766553333333333333
Q ss_pred CHHHHHHHHHHHHhhhhhhhh
Q 004922 655 NDTYLKELIEEWCEGVIQDKN 675 (723)
Q Consensus 655 ~~~~~~~li~~~~~g~~~~a~ 675 (723)
..+-..+..+|-.|.+....
T Consensus 542 -kE~~eyI~~AYr~g~ySkI~ 561 (932)
T KOG2053|consen 542 -KETPEYIALAYRRGAYSKIP 561 (932)
T ss_pred -hhhHHHHHHHHHcCchhhhH
Confidence 33556667777766444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=57.76 Aligned_cols=118 Identities=8% Similarity=0.020 Sum_probs=86.7
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 311 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
.|+...... +.+......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 223455666777888899999999999888763 23466778888888889999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
..+.. +...+..+...+...|++++|...|+...+. .|+...+.
T Consensus 79 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPD-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred hcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 76533 6677777888889999999999999888875 35444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.016 Score=52.60 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHHHHhhhcCChHH
Q 004922 234 KRDLVSALRAYDASKKH---L-SSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~ 307 (723)
..+.++.++++.++... | ..++.++ |..+.-+....|+.+-|...++++...=. .+.+.-..+++---.+.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45778888888777642 3 4456554 55666677788999999999998877621 23344444444445578899
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
|.++|+.+...+ +.|.+++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999998876 567777777777777788877887776666553 67799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004922 388 DMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 427 (723)
+++-..+. +...+..+...+.-. .+...+.++|.+..+.
T Consensus 179 E~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99876432 444444555544433 3566788888888765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.015 Score=58.11 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~ 381 (723)
++++.|+..++.+...- +.|+.........+.+.|+..+|.+.++.+.. ..|+ ...+-.+..+|.+.|+..+
T Consensus 320 ~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 320 GQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHHHHHHhcCChHH
Confidence 45555555555554431 22333334444555555555555555555554 2333 3344445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
|..+++........ |...|..|..+|...|+..++....
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555544322 5555555555555555555554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0043 Score=60.53 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....|...+..|...|++++|...|.++.......... ......+......+ +.+++++|++.|+++.+.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~------- 103 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEI------- 103 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH-------
Confidence 67788888888989999999999998876653211110 11123333333333 333677777776666541
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcC-CChHHHHHHhhhC------CCC--
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV------PRA-- 220 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~------~~~-- 220 (723)
+...|++..|-.++.. ++..|... ++++.|.++|..+ ...
T Consensus 104 ---------------y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 104 ---------------YREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp ---------------HHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred ---------------HHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 1224555555444433 33444444 4555555544432 000
Q ss_pred --cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 --DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..++..+.+.|++++|.++|+++...... .++. .+-..+-.+...||...|...|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 133445666666677777777777666543221 1111 1122222344556666666666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=59.80 Aligned_cols=97 Identities=7% Similarity=0.018 Sum_probs=58.7
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+......++..+...|++++|.+.++.+ |.+...+..+...+...|++++|...|+...+.+ +.+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 444444445555555556666665555442 4455666666667777777777777777665542 23455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..|...|++++|...|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=46.54 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (723)
+||++|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=59.97 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.++.+-.....+...|++++|..+|+-+.... |.+...|..++..+...|++.+|+..|... |+++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33444444444556899999999999888755 777777888888887777777777777663 666777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.+...|+.+.|++.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00059 Score=53.22 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYIT 623 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (723)
..|..|...+++...-.+|..++..|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566888888888888888888 788888888887776542 24467788888888889999999998
Q ss_pred HHHHHHh
Q 004922 624 LLRARSR 630 (723)
Q Consensus 624 ll~~~~~ 630 (723)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00055 Score=68.88 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=101.0
Q ss_pred CcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 587 (723)
+.+...+..+++.+.. +.+.+..++...... ....-..|..++|..|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4456667777777764 577888888777764 222234466799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
.||+.+.+.|++..|.++.-.|...+.-.+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999777778889999888888887
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00068 Score=68.21 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=106.4
Q ss_pred CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 004922 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (723)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 398 (723)
+.+.+......+++.+....+++.+..++-+.+...... ..-..|..++++.|.+.|..++++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~--~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS--YLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc--cccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 446677788888888888888999999988887632121 222345579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (723)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888778888888888877776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.003 Score=54.58 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWS 402 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 402 (723)
..|..++..+ ..++...+...++.+..- .+.........-.+...+...|++++|...|+........|+. ....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 478888888888888762 1101111234455667888999999999999999987633332 2445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5677888999999999999775433 334556777788999999999999998753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.3e-05 Score=44.55 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (723)
.+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0059 Score=59.60 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=117.2
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
...|...|++++|.+.|.+..+.....+. ....-..+..+...+. .+++++|+..+++. +.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A----------------~~ 102 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYK-KGDPDEAIECYEKA----------------IE 102 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH----------------HH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH----------------HH
Confidence 33477889999999999887653211111 0112223333322222 23666666666553 45
Q ss_pred HHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 004922 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 273 (723)
.|...|++..|-+ .+..+...|... |++++|++.|.+..+. |... -...+..+...+.+.|+++
T Consensus 103 ~y~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 103 IYREAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 5667777776643 456678888888 9999999999887542 2111 1345677888899999999
Q ss_pred HHHHHHHHHHhCCCc-----ccH--HHHHHHH-hhhcCChHHHHHHHHHHHHcC--CCcC--hhhHHHHHHHHHHc--CC
Q 004922 274 KSRAIYEDLRSQNVT-----LNI--YVFNSLM-NVNAHDLKFTLEVYKNMQKLG--VMAD--MASYNILLKACCLA--GN 339 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~-----~~~--~~~~~ll-~~~~~~~~~a~~~~~~m~~~g--~~~~--~~~~~~ll~~~~~~--~~ 339 (723)
+|.++|+++...-.. .+. ..+.++| ..+.+|...|.+.|++..... ...+ ......|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999999998765322 222 2233333 345589999999999987542 2222 23445566665432 23
Q ss_pred hHHHHHHHHHH
Q 004922 340 TVLAQEIYGEV 350 (723)
Q Consensus 340 ~~~A~~~~~~~ 350 (723)
+..+..-|+.+
T Consensus 253 f~~av~~~d~~ 263 (282)
T PF14938_consen 253 FTEAVAEYDSI 263 (282)
T ss_dssp HHHHCHHHTTS
T ss_pred HHHHHHHHccc
Confidence 55555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0031 Score=63.31 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
....|+..+...++++.|..+|+++.+ ..|+. ...++..+...++-.+|.+++++.+..... +......-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE------RDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh------cCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344566777788999999999999986 33554 445778888888999999999999976433 677777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
..|.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999999873 3455599999999999999999999988765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0031 Score=63.36 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
...|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++++..+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~------------------ 229 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE------------------ 229 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh------------------
Confidence 3345555555566666666666666532 332 223445555555555555555444422
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccCCHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a 382 (723)
. +.+......-...+.+.++++.|.++.+++.. ..|+. .+|..|..+|.+.|+++.|
T Consensus 230 ---------------~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 230 ---------------N-PQDSELLNLQAEFLLSKKKYELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred ---------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHH
Confidence 1 23444455555666677777777777777766 33444 3677777777777777777
Q ss_pred HHHHHHHH
Q 004922 383 LKVKEDML 390 (723)
Q Consensus 383 ~~~~~~m~ 390 (723)
+..++.+.
T Consensus 288 LlaLNs~P 295 (395)
T PF09295_consen 288 LLALNSCP 295 (395)
T ss_pred HHHHhcCc
Confidence 77666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=57.52 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHHH
Q 004922 547 NHISWTILIDACGG-----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----------------SKRLKQAFSL 605 (723)
Q Consensus 547 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 605 (723)
+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 34455555555556666666666666666655432 1234568889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 606 FEEMKHYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
+++|...|+-||..|+..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999877776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.024 Score=53.53 Aligned_cols=188 Identities=7% Similarity=-0.018 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-..+..+.+.|++++|+..|+++....+.+. +. ..+...++.++.+.+++++|+..+++.++ ..|+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a----~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YS----QQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCc
Confidence 33344566677779999999999999999854332 11 22234666778999999999999999998 4565442
Q ss_pred ccchhhhhHHHHHH--hh---------------ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH
Q 004922 151 DGSGFKLLKNECQR--LL---------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (723)
Q Consensus 151 ~~~~~~~l~~~~~~--~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (723)
.. +..+..+.+. +. +.....+|+..|+.+++.- |++.- ..+|...
T Consensus 105 ~~--~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~r 166 (243)
T PRK10866 105 ID--YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKR 166 (243)
T ss_pred hH--HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHH
Confidence 21 1122222110 00 1122346677777777654 43321 1122111
Q ss_pred hhhCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 214 ACIVPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLS--SPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 214 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
...+... ..--..+...|.+.|.+..|..-|+.+.+.-. +....+...++.+|...|..++|......+.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111000 01122467789999999999999999987532 1245677788899999999999988776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=51.23 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (723)
+...+...|++++|+..++....... ....+....+.|.+.|+.++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444444444444444333222 22233344444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.2 Score=49.52 Aligned_cols=86 Identities=7% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCCCcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccC
Q 004922 49 IPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREG 127 (723)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g 127 (723)
....|...+.+...++.+|++ ..+|-.|++-+-.+|..++....++++....+ -|..|.. .++.-....
T Consensus 21 ~~~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l---------y~s~ELA~~ 90 (660)
T COG5107 21 SDNIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL---------YMSGELARK 90 (660)
T ss_pred ccCCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH---------Hhcchhhhh
Confidence 344555556677779999999 99999999999999999999999999987743 2232322 122234567
Q ss_pred ccchHHHHHHHHhhcCC
Q 004922 128 RIDCVVGVLKKLNELGV 144 (723)
Q Consensus 128 ~~~~A~~~~~~~~~~~~ 144 (723)
++.....+|.+-+..-+
T Consensus 91 df~svE~lf~rCL~k~l 107 (660)
T COG5107 91 DFRSVESLFGRCLKKSL 107 (660)
T ss_pred hHHHHHHHHHHHHhhhc
Confidence 78888888887776433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=49.12 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 403 (723)
++..+...+.+.|++++|.+.|..+...... .......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777788889999999999888762100 0112345666888888999999999999988865322 12456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7888888999999999999888763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0039 Score=55.44 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCcCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----------------CCHHH
Q 004922 510 SFKPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS----------------GNVEG 566 (723)
Q Consensus 510 ~~~p~~~~~~~ll~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~ 566 (723)
+-..|..+|..++..|.+ +.+-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 456788999999999973 4677788899999999999999999999988653 23578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 004922 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMK 610 (723)
Q Consensus 567 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 610 (723)
|++++++|...|+-||..++..+++.|++.+.. .+..++.-.|.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877653 34444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0024 Score=54.12 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=79.7
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
++.....+.++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++++|+..|.......+ -|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 445555667778888899999999988774 66778888899999999999999999999887543 4677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999887754
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.23 Score=48.90 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
..+.+..+.-+...|+...|.++..+.. -|+..-|-..+.+|+..++|++-.++-.. +-++..|..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHH
Confidence 3456666777788899888888877664 37888999999999999999887765432 124577899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
++.+|.+.|+..+|..+...+ + +..-+..|.++|++.+|.+.-.+
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999888772 1 35567888899999998776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=64.16 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=58.3
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|+++++.. |.+ ..++..+..+|...|++++|+..++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~--P~~------------------------------~~a~~~~a~~~~~~g~~~eAl~~~~ 60 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD--PNN------------------------------AELYADRAQANIKLGNFTEAVADAN 60 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999888755 444 3455556666666677777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+... .+...|..+..+|...|++++|+..|++..+.
T Consensus 61 ~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 61 KAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7665321 24556666666777777777777777776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0018 Score=60.25 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=63.8
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
+.+.++|.+|+..|.++++.. |.+..+|..-..+|.+.|.++.|++-++.. |....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 344789999999999988855 777777777777777777777777665553 33446666777777777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHH
Q 004922 241 LRAYDASKKHLSSPNMYICR 260 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~ 260 (723)
.+.|.+.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777777665 445444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0043 Score=51.46 Aligned_cols=104 Identities=11% Similarity=-0.024 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+..++..+.+.|++++|...++.++... |+... ...+...+...+...|+++.|...|+.+... .|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcc
Confidence 456677888899999999999999998874 33210 0122234556688999999999999999874 4443211
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
... +......+...|++++|+..++++++..
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDA---LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHH---HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 222 2333333445899999999999988765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=52.31 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=103.9
Q ss_pred cCCcc--hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 65 RDLSS--RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 65 ~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
|.|+. ....|..-+.+|....+++.|...+.++.+-.- +.+ .++....+...+...-....+.++..+++++..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---lfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444 567788888899999999999998888774421 222 222344444444445555556666666655543
Q ss_pred c---CCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC
Q 004922 142 L---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (723)
Q Consensus 142 ~---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (723)
. ...|+ +-..-+..+..+.++-++++|+.+|.+.. ......++..+|.++
T Consensus 100 lY~E~Gspd------tAAmaleKAak~lenv~Pd~AlqlYqral----------------avve~~dr~~ma~el----- 152 (308)
T KOG1585|consen 100 LYVECGSPD------TAAMALEKAAKALENVKPDDALQLYQRAL----------------AVVEEDDRDQMAFEL----- 152 (308)
T ss_pred HHHHhCCcc------hHHHHHHHHHHHhhcCCHHHHHHHHHHHH----------------HHHhccchHHHHHHH-----
Confidence 2 01121 11222222333334455555555554432 122222222333222
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---Cccc
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASK----KHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLN 290 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~~~ 290 (723)
+......+.+..++++|-..|.+-. +..-.++. ..|-..|-.|....++..|...++.--+.+ -..+
T Consensus 153 -----~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed 227 (308)
T KOG1585|consen 153 -----YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED 227 (308)
T ss_pred -----HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH
Confidence 2233444555555555544433211 11011222 234444445555666666666666644332 1234
Q ss_pred HHHHHHHHhhhc-CChHHHHHHH
Q 004922 291 IYVFNSLMNVNA-HDLKFTLEVY 312 (723)
Q Consensus 291 ~~~~~~ll~~~~-~~~~~a~~~~ 312 (723)
..+...||.+|. |+.+.+.+++
T Consensus 228 ~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 228 SRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhccCCHHHHHHHH
Confidence 555666666654 5555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0077 Score=47.22 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=38.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++........ +..++..+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHH
Confidence 3444444455555555555544431 1112233444444444444555555554444443221 223344444444
Q ss_pred HhcCCHHHHHHHHHHH
Q 004922 409 ANAGLVEQAMHLFEEM 424 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~ 424 (723)
...|+++.|...+...
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4444444444444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0074 Score=47.30 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+...+...|++++|..++++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 445666677788888888888888765432 44667777778888888888888888877654 3344567777778888
Q ss_pred hCCHHHHHHHHHHhhh
Q 004922 446 ACQFDRAFRLFRSWTL 461 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~ 461 (723)
.|+.+.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=57.66 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHhhh-cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
.+|..+++...+.+..+.|..+|.+.++.+ ...+++...++|..+ .++.+.|.++|+...+. ...+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356677777777777778888887777553 345566666666555 35666677777777654 245667777777888
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
...|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877651 2222 236777777767777777777777777654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=55.68 Aligned_cols=114 Identities=10% Similarity=0.124 Sum_probs=81.0
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
.+...++.+|++ ...|..|...|...|++++|...|.++.+. .|+...... .+...+..-.....-.++..+|+
T Consensus 144 ~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~---g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 144 RLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILL---GLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHH---HHHHHHHHhcCCcccHHHHHHHH
Confidence 366669999999 999999999999999999999999999998 444333321 22222222233333447999999
Q ss_pred HHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
++++ ..|++. .....|.- .+...|++.+|...++.|++..
T Consensus 218 ~al~--~D~~~i---ral~lLA~---~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 218 QALA--LDPANI---RALSLLAF---AAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHh--cCCccH---HHHHHHHH---HHHHcccHHHHHHHHHHHHhcC
Confidence 9997 566554 33334433 3445899999999999998865
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=57.44 Aligned_cols=144 Identities=10% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|..++...-+.+..+.|..+|.+....+. +..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------------------------------------------~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR----------------------------------------------CTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------S-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------------------------------------------CCH
Confidence 3566677777777777777777777653321 245
Q ss_pred CHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHH
Q 004922 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV----VAYTT 588 (723)
Q Consensus 514 ~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ 588 (723)
++....+.|.-++ ++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.... + |.. ..|..
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~ 112 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKK 112 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHH
Confidence 5666666666554 4666688888877765 4456667777777777888888888888887764 2 333 37777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (723)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 628 (723)
.+.-=.+.|+.+.+.++.+++.+ .-|+...+..++.-|
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 77777777888888888877776 244444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.024 Score=55.00 Aligned_cols=138 Identities=16% Similarity=0.041 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhh-cCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCCH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GV-TPNT 398 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~ 398 (723)
..|..|.+.|.-.|+++.|....+.-..+.. -|.-......+..+.+++.-.|+++.|.+.|+.-... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566777777778888888776554333211 1211123346777888888888888888888765432 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
....+|.++|.-..++++|+.++.+-..- ...-....|-++..+|...|..++|+.+.+.-...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556777777777888888877654321 11234556777888888888888888777655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=50.05 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.++.+-.....+-..|++++|..+|.-+...+ +.+..++..|+..+...+++++|+..|... +.++..+.....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 44444444445556899999999999988755 677788899999999999999999987763 677788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.|...|+.+.|+..|....+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.017 Score=47.22 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhc
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (723)
...+-..|+.++|+.+|++.+..|+.... ....++.....+...|++++|+.+|+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33456677778888888877776554322 3345555555566677777777777776653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=49.53 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=38.2
Q ss_pred cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (723)
Q Consensus 337 ~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (723)
.|+++.|..+++++...... .++...+..+..+|.+.|++++|..+++. ...+.. +......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 35566666666666552100 01233344455566666666666666655 221111 22223334555566666666
Q ss_pred HHHHHHH
Q 004922 417 AMHLFEE 423 (723)
Q Consensus 417 a~~~~~~ 423 (723)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=50.34 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987542 2455566689999999999999999988 3322 1233444566889999999999999
Q ss_pred HHHH
Q 004922 455 LFRS 458 (723)
Q Consensus 455 l~~~ 458 (723)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.42 Score=47.64 Aligned_cols=455 Identities=12% Similarity=0.056 Sum_probs=242.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhh
Q 004922 80 KLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 157 (723)
.+.+++++.+|..+|.+..+.- ..|..+. -.++ .+++.+| -..+.+.-...+....+. .|+. .+-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lk----eEvl~grilnAf-fl~nld~Me~~l~~l~~~--~~~s-----~~l~ 82 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLK----EEVLGGRILNAF-FLNNLDLMEKQLMELRQQ--FGKS-----AYLP 82 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHH----HHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh--cCCc-----hHHH
Confidence 4677899999999999987663 2333332 2233 4455555 445566656666666553 3321 2222
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (723)
+..+...+ +.+.+..|++.+..-...-........-..+-. .-++-..-+..+..+...|++
T Consensus 83 LF~~L~~Y-~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----------------l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 83 LFKALVAY-KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----------------LFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----------------HhhHHHHHHHHHHHHHhcCCc
Confidence 22222222 368889998888765443111111111110100 011112233467788889999
Q ss_pred HHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCcccHH
Q 004922 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNIY 292 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g--------~-------~~~a~~~~~~m~~~------g~~~~~~ 292 (723)
.+++.+++++...-.+ -+..+|+.++-.+++.= . ++.+.-...+|... .+-|...
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee 224 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE 224 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH
Confidence 9999999888765443 47788887555544321 1 12222222223221 2234444
Q ss_pred HHHHHHhh-hc---CChHHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 293 VFNSLMNV-NA---HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 293 ~~~~ll~~-~~---~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
.+..++.- +. ....--++++..-...-+.|+-. +...|...+.+ +.+++..+.+.+........-+.=..++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444442 11 12233344444444444455533 33334444443 55555555554433110000111234688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh-c---CCHHHHHHHHHHHHHcCCCCCHH-H
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN-A---GLVEQAMHLFEEMLQAGCEPNSQ-C 435 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~li~~~~~-~---g~~~~a~~~~~~~~~~~~~~~~~-~ 435 (723)
.++...++.++...|.+.+.-+...+ |+...- ..+-+..|. - -+...-+.++......++ |.. .
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQL 378 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQL 378 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHH
Confidence 88888899999999999988877653 332211 112222221 1 112233344444443322 221 1
Q ss_pred HHHHH---HHHHHhCC-HHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 436 CNILL---QACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 436 ~~~ll---~~~~~~g~-~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
...++ +-+-+.|. -++|.++++.+..-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------ 410 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------ 410 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------
Confidence 12222 22334444 778888887766421
Q ss_pred CcCHHHHHHH----HHHHhh-----cHHHHHHHHHHHHHcCCCCCH----HHHHHHHH--HHHcCCCHHHHHHHHHHHHH
Q 004922 512 KPTTTTYNIL----MKACCT-----DYYRVKALMNEMRTVGLSPNH----ISWTILID--ACGGSGNVEGALQILKIMRE 576 (723)
Q Consensus 512 ~p~~~~~~~l----l~~~~~-----~~~~a~~l~~~m~~~~~~p~~----~~~~~li~--~~~~~g~~~~A~~~~~~m~~ 576 (723)
.-|...-|.+ =.+|.+ ...+-..+-+-+.+.|++|-. ..-|.|-+ -+...|++.++.-.-..+.+
T Consensus 411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ 490 (549)
T PF07079_consen 411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK 490 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2233333322 223332 244555666677778887733 34455544 34678999999888777776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (723)
Q Consensus 577 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 625 (723)
+.|++.+|..+.-+.....++++|..+++.+ .|+..++++=+
T Consensus 491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 6899999999999999999999999999876 67777776543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.002 Score=46.56 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
++..+.+.|++++|+..|++++.. .|.....+.. +...+...|++++|...|+++++ ..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYL------LGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHH------HHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 567888999999999999999999 6765544444 44448999999999999999987 3553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.31 Score=46.10 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
.......+...|++++|.+.|+.+....+.+ ... .-.++.++.+.+++++|...|++..+.-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4445556667888899999888888753322 222 2455677788889999999888888763
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=50.88 Aligned_cols=255 Identities=12% Similarity=0.014 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
..++.+|+..+..+++.. |++..+|..-+..+...+++++|.-..+.. +..........+.+...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888888888888755 888888888888888888888877655432 22222222233333333333333333
Q ss_pred HH---------------HHHhcCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHhhhcCCh
Q 004922 244 YD---------------ASKKHLS-SPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDL 305 (723)
Q Consensus 244 ~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~ 305 (723)
++ ....... +|.-..+..+- ..+.-.|++++|.+.--...+.. ...+....+.++-.+..+.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence 22 1111111 12223333332 34566789999988777766542 1222333333333355678
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHH-------------HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNI-------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~-------------ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
+.+...|.+-+..+ |+...-.. =.+-..+.|.+..|.+.|.+...+.... ..++...|......
T Consensus 220 ~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nra~v 296 (486)
T KOG0550|consen 220 DKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNRALV 296 (486)
T ss_pred HHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHhHhh
Confidence 88888888887654 44322111 1233457899999999999998865443 67777888888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
..+.|+.++|+.--+.....+.. -+..|..-..++...+++++|.+-++...+..
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988888764211 12233444456666788999999998887753
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.029 Score=56.69 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=66.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (723)
Q Consensus 331 l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (723)
...+...|++++|.+.|+++..+ .+.+...|..+..+|.+.|++++|+..+++.+..... +...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 34555677888888888887763 2334556777777788888888888888888776433 56677777778888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004922 411 AGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 411 ~g~~~~a~~~~~~~~~~ 427 (723)
.|++++|...|++..+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 88888888888887765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.39 Score=46.73 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=43.6
Q ss_pred hhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhhc
Q 004922 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~ 142 (723)
.++|+++.|..++.++.... .+|+.... ....+.++.......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999987764 24544332 3445566777777777 999999999988764
|
It is also involved in sporulation []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.73 Score=48.39 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=39.1
Q ss_pred HHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..+.+...+++-+.+...+|.+....-.+.+++.+.|.-++|++.|-+... |. +.+..|...++|.+|.++
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHH
Confidence 333344444444444455566666666666666666666666665544221 21 223445555666666655
Q ss_pred HHH
Q 004922 279 YED 281 (723)
Q Consensus 279 ~~~ 281 (723)
-+.
T Consensus 901 aq~ 903 (1189)
T KOG2041|consen 901 AQR 903 (1189)
T ss_pred HHh
Confidence 543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.057 Score=49.65 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
+....-..+..+...|++.+|+..|+.+....+... + ...+...++.++.+.|+++.|...+++.++. .|+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~----a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-Y----APQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-T----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc
Confidence 345556677888889999999999999999844311 1 2334456777789999999999999999984 55433
Q ss_pred cccchhhhhHHHHHH----------hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC
Q 004922 150 FDGSGFKLLKNECQR----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (723)
... ...+..+.+. ..+.+...+|+..|+.++..- |++.. ...|......+..
T Consensus 77 ~~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 77 KAD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAELRN 138 (203)
T ss_dssp THH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHHHHH
T ss_pred chh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHHHHH
Confidence 111 1122221111 122344556777777776644 43322 1122221111100
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004922 220 A-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 220 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 275 (723)
. ..--..++..|.+.|.+..|..-++.+.+.-... ...+...++.+|.+.|..+.+
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0 0112236778889999999999998888753211 123566777788888877644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.058 Score=48.18 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+.+....... +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 445666777788889999999998888763111 11 1356788888888899999999999888876433 456666
Q ss_pred HHHHHHHhcCC
Q 004922 403 SLINACANAGL 413 (723)
Q Consensus 403 ~li~~~~~~g~ 413 (723)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 67777777665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.59 Score=45.61 Aligned_cols=245 Identities=14% Similarity=0.045 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|.+-|+.|.... .....-...+.-.-.+.|..+.|.++. .+.|.-..++..++...|..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 477888888888776422 101111111222223456666555543 33455666666777777777777777777
Q ss_pred HHHHHhcC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHH---HHHhhhcCChHHHHHHHHH
Q 004922 244 YDASKKHL-SSPNMY--ICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNAHDLKFTLEVYKN 314 (723)
Q Consensus 244 ~~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~~~~a~~~~~~ 314 (723)
.+.-.+.. +.+++. .-..|+.+-.. .-+...|...-.+..+. .||..--. +-.....++..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 76655432 223321 12223322111 12344444444333332 23321111 1111122556666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
+.+...+|+ .+. +..+.+.|+ .+..-++...++.. ++|| ......+..+-...|++..|..--+.....
T Consensus 289 aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 289 AWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 666533333 221 122333343 23333333333211 2233 334455555556666666555544444432
Q ss_pred CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 004922 394 VTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~ 427 (723)
.|....|..|.+.-.. .|+-+++...+.+..+.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4555555555554433 36666666666665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.005 Score=45.03 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNE 141 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~ 141 (723)
...|..++..+...|++++|+..|++++.. +|+....+ .++...+...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~------~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAY------YNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH------HHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999 77755443 44455588999 79999999999887
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.15 Score=45.56 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344577777788889999999999999886543332 3578888889999999999999999888753 3345566666
Q ss_pred HHHHHHhCCHHHHH
Q 004922 440 LQACVEACQFDRAF 453 (723)
Q Consensus 440 l~~~~~~g~~~~a~ 453 (723)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766655543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.036 Score=49.31 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+....+... ......+|..+...+...|++++|+..++........ ...++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 455667777778889999999999988763110 0112347888888889999999999999988875322 3455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 004922 404 LINACA-------NAGLVEQAMHLFEEM 424 (723)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~~ 424 (723)
+...+. +.|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777777666655544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.039 Score=49.09 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+..++..+...|++++|...|+........+ ...++..+...|...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888888899999999999987643222 2357888889999999999999999887754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=54.17 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYI 622 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (723)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...|...|+.++|.+.+++... +.|...||.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 45577877777777789999999999999985 57888999999999999999999999999876 467666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.72 Score=45.49 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=31.9
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
.....|+.+-|..+++. .|. ...-+..+...++.+.|+.-.-...+.+.+|..|+..-
T Consensus 9 ~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~ 66 (319)
T PF04840_consen 9 KAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLK 66 (319)
T ss_pred HHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHH
Confidence 33447888888887652 121 23345566667777776544333334444555555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0043 Score=46.79 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
...+..++..+...|++++|+..|+++++.. ..+ ........+.++...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998773 122 2233456678888899999999999999998875
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=51.46 Aligned_cols=113 Identities=9% Similarity=-0.053 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC---CHHHHHHH
Q 004922 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR---DLVSALRA 243 (723)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~---~~~~A~~~ 243 (723)
.+..+.-++.-++.+ |.+...|..++++|...++.+.|...|.. .|+++..+..+..++..+. ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444455545544 88888888888888888888888877666 3777777776666555432 45677888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|+++...+. -|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888877432 366777777777888888888888888888763
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0077 Score=43.88 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=22.6
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555544431 122333444444444455555555555444444
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.13 Score=54.59 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=52.7
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
..++..|..+.-.+...|++++|...+++... +.|+...|..+...+...|+.++|.+.+++....++
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34456666666666667888888888888887 567778888888888888888888888888887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.031 Score=52.27 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+.+.+++.+|+..|.+...+ .+-|.+.|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 44566777777777777663 2345555666677777777777777766666654322 34567777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
+.+|++.|++.+.. .|+-.+|-.=+
T Consensus 165 ~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 77777777766653 56655554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.11 Score=42.50 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+...+..++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..+|++....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556667777888888888888887775443 335556667777888888888888877654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=42.36 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667888899999999999998864 236778888899999999999999999988765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.43 Score=43.81 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=37.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+.++..+.-.+.+.-.+.++++..+...+.++.....+++.-.+.||.+.|...|++..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555555666666666666665544445555566666666666666666666655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.088 Score=51.29 Aligned_cols=305 Identities=14% Similarity=-0.008 Sum_probs=153.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh--cCCCcccccccc
Q 004922 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE--LGVAPLELFDGS 153 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~ 153 (723)
.-..-+++.|+...-+..|+.+++.|.+.- ...-.++..+..+|.-.++|++|++....-+- .-+. +..--.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-dklGEAK 96 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-DKLGEAK 96 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-chhcccc
Confidence 345678999999999999999999975421 12344556777788888889888876533211 0000 0000000
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHH----hcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.-..|.+.+.. .|.+++|+-+..+-+ +.+........++.++.+|-..|+--. ...|.+...++.=+
T Consensus 97 ssgNLGNtlKv---~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKV---KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV- 167 (639)
T ss_pred ccccccchhhh---hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH-
Confidence 11112222222 577777766543322 122111122223333333333222100 00010000010000
Q ss_pred HHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCC
Q 004922 230 EFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (723)
...++.|.+.|.+=. ..|-. .--..|..|...|--.|+++.|+...+.-...
T Consensus 168 ----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------- 224 (639)
T KOG1130|consen 168 ----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------- 224 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH-------------------
Confidence 001222333332211 11100 11223444555555555666665544432211
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh-cCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
|.+.=++. .....+..+.+++.-.|+++.|.+.|+....+.. -|.-........+|.+.|.-..+++.|+
T Consensus 225 ---a~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 225 ---AQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred ---HHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111111 1233566778888888999999888877654321 1212233456677888888888888998
Q ss_pred HHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 384 KVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 384 ~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
.++.+-+.. +..-....+-+|..+|...|..++|+.+...-++
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 887664321 1112445677889999999999999888776554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.012 Score=42.93 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=45.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
...|++++|++.|+.+....+ -+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457888888888888877532 36777888888888889999998888888876 3443444333
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.91 Score=44.38 Aligned_cols=296 Identities=12% Similarity=0.012 Sum_probs=185.8
Q ss_pred hhHHHHHHHHhhc--CChHHHHHHHHHHHHh-cCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc
Q 004922 72 DYYADMASKLAKD--GRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (723)
Q Consensus 72 ~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 148 (723)
..|+.|...++.. |+-..|..+-.+.-.. ..+.....+++. . ..-...|+++.|..-|+.|.. .|..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe--A-----Qaal~eG~~~~Ar~kfeAMl~---dPEt 152 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE--A-----QAALLEGDYEDARKKFEAMLD---DPET 152 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH--H-----HHHHhcCchHHHHHHHHHHhc---ChHH
Confidence 4566777666554 6777777766654422 112111111111 1 123468999999999999996 3422
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC------CCc-
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP------RAD- 221 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~- 221 (723)
. .--|-.++....+.|..+.|+.+-++.-... |.-.+.+...+...+..|+++.|+++.+... ++.
T Consensus 153 R-----llGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 153 R-----LLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred H-----HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 1 1122223333445799999999888876544 7778888999999999999999999987631 111
Q ss_pred -chHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 222 -ILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 222 -~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
..-..|+.+-.. ..+...|...-.+..+ ..||.. .--.-..++.+.|+..++-.+++.+-+.. |....+..
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l 301 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH
Confidence 111122222111 2345556555444444 445533 33344567899999999999999999884 45555555
Q ss_pred HHhhhcCChHHHHHHHHHHHHc-CCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKL-GVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
...+..|+. ++.-+++..+. .++ .|..+.-.+..+....|++..|..--+.... ..|....|..|...--
T Consensus 302 Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r------~~pres~~lLlAdIee 373 (531)
T COG3898 302 YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR------EAPRESAYLLLADIEE 373 (531)
T ss_pred HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh------hCchhhHHHHHHHHHh
Confidence 556655542 33333332221 123 3456666777888899999998887777766 5688888888877654
Q ss_pred c-cCCHHHHHHHHHHHHHCCCCC
Q 004922 375 D-AKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 375 ~-~g~~~~a~~~~~~m~~~~~~p 396 (723)
. .|+-.++...+.+.+..--.|
T Consensus 374 AetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hccCchHHHHHHHHHHhcCCCCC
Confidence 4 499999998888887753333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.91 Score=47.28 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
+-+.+--+++++++|..|+... +...++-.|++.+|-++|.+
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3344445566777777676543 34456677888888777764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.027 Score=56.50 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=59.6
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
.+|+. ...+..+..+|.+.|++++|+..|+++++. +|+.... ..++.++...|...|++++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777 889999999999999999999999999999 5654321 123456677799999999999999999984
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.4 Score=41.59 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCG 267 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 267 (723)
...++.++.+.|++.+|...|... -.+......+.++....+++..|...++++-+.... .+..+.-.+.+.|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 445666777777777777776663 345566666777777777888888777777664311 12334455666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
..|++.+|...|+.....-..|....+-..+
T Consensus 172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777777777654334444433333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=44.91 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 436 (723)
....++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455666677889999999999998887544 788899999999999999999999887754 3788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.069 Score=44.18 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (723)
|..++..+|.++++.|+++....+++..=. ..+.|+..+..+++.+|+..|++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456777788888888888877777754321 1244667777777777777777777777777655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 004922 611 HYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
..++.-+..+|..|+.-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 44566667777777765544443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=41.78 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEM 424 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~ 424 (723)
.|..+...+...|++++|+..|++.++.... +...|..+..++.+.| ++++|+..+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3334444444444444444444444433221 3334444444444444 344444444443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.073 Score=46.01 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=72.2
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCC---Cc-ccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP---VK-ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
..++.........|+.+.++..+++++..--. ++ ....|..-.+... ... -..+...++..+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l------------~~~--~~~~~~~l~~~~ 72 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL------------REL--YLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH------------HHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH------------HHH--HHHHHHHHHHHH
Confidence 33433333334467888888888888754311 11 0111221111111 000 013455677888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 292 (723)
...|++++|..+...+....+ -+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 899999999999999988532 4788999999999999999999999998754 25555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.053 Score=51.70 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...|......+.+.|++++|+..|+.++...+ +.. ....+...+...|...|++++|...|+.+.+. .|+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 55677766666778999999999999999954 321 11233345666788999999999999999974 554432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
....+.+....+...|+.++|...|+.+++..
T Consensus 216 ---~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 ---AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444444444556899999999999988755
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.2 Score=43.92 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 558 CGGSGNVEGALQILKIMRED---GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+.|++..|.+.+.+.+.. +.+|+...|.....+..+.|+.++|+.--++..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 34667777777777776642 344555566666666667777777777666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.08 E-value=2.6 Score=45.11 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=95.9
Q ss_pred HHHHHHHH-cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 310 EVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 310 ~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
++.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-..
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 34444432 2444555667777788888999999999887765 38999999999999999999987776655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+. ...-|.-++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 43 346688899999999999999999887632 11 577889999999998876543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=43.03 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
...+.+.+++++|+..++.++.. +|..+..+...+.+ +...|++++|.+.|++..+. .|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~--~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARC------LFQLGRYEEALEDLERALEL--SPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHH------HHHhccHHHHHHHHHHHHHH--CCC
Confidence 46788899999999999999999 67765555555444 89999999999999999984 553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.3 Score=40.92 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL---- 440 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 440 (723)
..+.++..+.-.|.+.-.++++++..+...+-+......+++.-.+.||.+.|..+|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777788888889999999887767788888889998899999999999999887654344444444443
Q ss_pred -HHHHHhCCHHHHHHHHHHhhh
Q 004922 441 -QACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 441 -~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..|.-.+++..|...+.++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hhheecccchHHHHHHHhhccc
Confidence 234455677777777766554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.17 Score=41.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004922 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~ 646 (723)
|..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 46788999999999999999999997642 12356999999999999999999665 5667777
Q ss_pred HHH-cCCCCCHHHHHHHHHHHH
Q 004922 647 MWK-AGYKANDTYLKELIEEWC 667 (723)
Q Consensus 647 m~~-~g~~p~~~~~~~li~~~~ 667 (723)
..+ .++..+..+|..|++...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 764 789989999999998754
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.2 Score=40.85 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+...+..+...|++.+|.+.|+.+....+.. -..+.-.++.++.+.|+++.|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777888899999999999988754321 2445667778888889999999999888765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.5 Score=42.46 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=79.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCcccHHHHHHHHhhhcCC
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNAHD 304 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~ 304 (723)
+-+++++.+|.++|.++.+.... |. ....+.++++|... +.+.....+..+.+. |-.+-...|.++.....++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 44667777787777776653211 11 22345566666443 344444444444433 4445556666666666677
Q ss_pred hHHHHHHHHHHHHc--CCCc------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 305 LKFTLEVYKNMQKL--GVMA------------DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 305 ~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
++.|.+.+..-... +..+ |-..=+..+..+...|.+.++..+++++....-+....-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 77777777665543 2111 222224456677778888888888777765221111235677777765
Q ss_pred HHHHc
Q 004922 371 KVFAD 375 (723)
Q Consensus 371 ~~~~~ 375 (723)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.023 Score=42.70 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHhHHHhhhccCccchHHHHHHHHhhcC--CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHh
Q 004922 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELG--VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
...+.++...+...|++++|+..|++.++.. ..++. ..+...+.+....+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777888999999999999999988641 22221 12344444444455558999999999887654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.22 Score=47.55 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNT 398 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~ 398 (723)
..|...+..+.+.|++++|...|+.+... .|+. ..+--+...|...|++++|...|+.+...-+. ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34555555555667788888878777763 2332 34555666677778888888888777754211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+-.+...+...|+.++|..+|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556666777777777777777665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.21 Score=50.30 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=57.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|.+...++++..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555688999999999999999999999998874 4542 46999999999999999999999999875
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=43.09 Aligned_cols=146 Identities=14% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCCC---CC
Q 004922 515 TTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDGM---SP 581 (723)
Q Consensus 515 ~~~~~~ll~~~~~~----~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p 581 (723)
..++.+++.....+ +++...+++.|.+.|++-+..+|-+-.-.... .. ....|..+++.|++... .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 44555555554443 56778899999999999888877653333322 22 35679999999998532 23
Q ss_pred CHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 004922 582 DVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~ 656 (723)
+...+..++.. ..++ .+.+..+|+.+.+.|+.. |..-+.+-+-++......+.+.++.++++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55566666544 3333 457788888888888877 4445555555555555555588999999999999999887
Q ss_pred HHHHHH
Q 004922 657 TYLKEL 662 (723)
Q Consensus 657 ~~~~~l 662 (723)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 777655
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.098 Score=38.59 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.|.+.+++++|.++++.+...++. +...|.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555544332 4444444555555555555555555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.5 Score=41.12 Aligned_cols=177 Identities=10% Similarity=-0.022 Sum_probs=99.7
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccc-hHHHHHHHHHHHHhc----CC-CCcccccHHH
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (723)
..++|+.+.|..++.++.......++......-..+.+....+...+ ++++|...+++..+. +. ......
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~---- 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD---- 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc----
Confidence 35899999999999998764211122222233344444445555677 888998888876542 10 000000
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
+ .+. ...++..++.+|...+..+ +|..+++.+..... -...++..-+..+.+.++.+
T Consensus 79 ----------~---~el------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 79 ----------G---SEL------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred ----------H---HHH------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChh
Confidence 0 000 0144566777787777654 45556666654322 12445556667777789999
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHhh----hcCChHHHHHHHHHHHHcCCCcCh
Q 004922 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~~ 324 (723)
++.+.+.+|...-.. ....+..++.. .......+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 999999999876221 22333333332 223555666666666554444443
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.82 Score=41.68 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=94.7
Q ss_pred HHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccc
Q 004922 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (723)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (723)
.+.+.....+|....++++|...+.++.+. -..+. +.| .+ ...++.|.-+.+++.+. +..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr----slf----hA------AKayEqaamLake~~kl---sEvvd 92 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR----SLF----HA------AKAYEQAAMLAKELSKL---SEVVD 92 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc----cHH----HH------HHHHHHHHHHHHHHHHh---HHHHH
Confidence 444555556678888999998888887752 11111 111 11 23445555555555432 22333
Q ss_pred cHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHH
Q 004922 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS--SPNMYICRTIIDVCG 267 (723)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 267 (723)
.+......|.+.|.++-|--.+++. .-....-++++|+++|.+...- +- ..-...+....+.+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA-----------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA-----------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH-----------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 4444455566666665554433332 1122334566666666654321 10 011223444555566
Q ss_pred hcCCHHHHHHHHHHHHhC----CCcccH---HHHHHHHhhhcCChHHHHHHHHHHHHcC---CCcChhhHHHHHHHHHHc
Q 004922 268 ICGDYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLA 337 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~----g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~ 337 (723)
+..++.+|-..|.+-... .-.++. +.-..++..+.+++..|.+.++.-.+.+ -+-+..+...||.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 666666655444332211 001111 1112223334456666666666533321 122344555555555 34
Q ss_pred CChHHHHH
Q 004922 338 GNTVLAQE 345 (723)
Q Consensus 338 ~~~~~A~~ 345 (723)
|+.+++..
T Consensus 241 gD~E~~~k 248 (308)
T KOG1585|consen 241 GDIEEIKK 248 (308)
T ss_pred CCHHHHHH
Confidence 45544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.52 E-value=3 Score=41.69 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
.+...++-.|....+|+..+++.+.+...- +.-....-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 445566677888899999999999987631 11122222233334455 688888888888865554445555555
Q ss_pred HHH
Q 004922 296 SLM 298 (723)
Q Consensus 296 ~ll 298 (723)
.+-
T Consensus 222 L~G 224 (374)
T PF13281_consen 222 LLG 224 (374)
T ss_pred HHH
Confidence 443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.24 Score=45.89 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=65.5
Q ss_pred CcCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (723)
+.|..+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.|+..+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 4556666666666542 34555566677777777777777777776554321 11211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
.+......|= .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111112222 22345788899999999999999999999999888864
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.6 Score=38.06 Aligned_cols=100 Identities=8% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCC-cChhhHHH
Q 004922 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVM-ADMASYNI 329 (723)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ 329 (723)
.|++.-...|..++.+.|++.+|...|++...--+.-|....-.+-++. .+++..+...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666667777888888888888888888776532223333333333221 13444444444444332100 01112222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+.+.+...|.+.+|+.-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444555555555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.41 E-value=3.3 Score=41.48 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhc--CChHHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH-
Q 004922 291 IYVFNSLMNVNA--HDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY- 366 (723)
Q Consensus 291 ~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~- 366 (723)
...|...|+... .-++.|..+|-+..+.| +.+++..+++++.-++ .|+...|..+|+.-.. .-||...|
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~------~f~d~~~y~ 469 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL------KFPDSTLYK 469 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH------hCCCchHHH
Confidence 345555555432 35677788888887777 5567777777776554 4667777788776544 23444433
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+-.+.-+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-+.|... .|...+...+..-|.
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 45566677778888888888754432 1112 456788888778888888888777777664 555555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.3 Score=43.36 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
-.+-+-+.-++++.+.+..|++. .++..|+-.|++.+|-++|.+.
T Consensus 614 l~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 614 LRYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred cHHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc
Confidence 34445555577788888766653 3566777788888888887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.1 Score=44.66 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
.+........+.-+-..|++++|..+|.-+ +.+...+..|...+-..+++++|+..|......+. -|...+....
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 334444455555666778888887777664 44556666777777777888888887777655432 2344445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004922 264 DVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~ 284 (723)
..|...|+.+.|...|.....
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667777788888777777665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.51 Score=48.87 Aligned_cols=161 Identities=9% Similarity=0.084 Sum_probs=103.5
Q ss_pred HHHHHhhcCChHHHHHHHHHH-HHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh
Q 004922 77 MASKLAKDGRLEEFAMIVESV-VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 155 (723)
..+...-+|+++++.++.+.- +-..+.++ ....+++-+-+.|-++.|+++...-. ..|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~~~---------~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rF 325 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIPKD---------QGQSIARFLEKKGYPELALQFVTDPD------------HRF 325 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG--HH---------HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHH
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCChh---------HHHHHHHHHHHCCCHHHHHhhcCChH------------HHh
Confidence 344455589999987777521 11111211 12455566788999999988854332 245
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
++.++ .|+.+.|.+..++ .++...|..|+....++|+.+.|++.+.+..+ +..|+-.|...|
T Consensus 326 eLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----~~~L~lLy~~~g 387 (443)
T PF04053_consen 326 ELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----FSGLLLLYSSTG 387 (443)
T ss_dssp HHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT
T ss_pred HHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----ccccHHHHHHhC
Confidence 55555 8999999886543 34566899999999999999999999998865 788888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
+.+.-.++-+.....|- +|....++...|+.++..+++.+.
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99888888877776542 444555556678888888777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.94 Score=47.70 Aligned_cols=124 Identities=11% Similarity=-0.110 Sum_probs=75.8
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhh-HHHHHHh-----h---ccchHHHHHHHHHHHHhcCCCC
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL-KNECQRL-----L---DSGEVEMFVGLMEVLEEFRLPV 188 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l-~~~~~~~-----~---~~g~~~~A~~~~~~~~~~~~~~ 188 (723)
.++....-.|+.+.+++.+.+..+.+ .... .+..+ +-.+... . .....+.|.++++.+.+.- |
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~-----~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P 264 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSE-NIRS-----PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P 264 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccC-Ccch-----HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C
Confidence 45556677899999999998877632 1111 11111 1111111 0 2456777888888887755 7
Q ss_pred cccccHHHHHHHHhcCCChHHHHHHhhhCCC--------CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 189 KELDEEFRIVQLCVNKPDVNLAIRYACIVPR--------ADILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
++.......++.+...|++++|++.++..-. ....+..++-.+...++|++|...|..+.+
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 7766666677777777777777777775321 113344555566666777777777777665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.24 Score=45.91 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=43.1
Q ss_pred ccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004922 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (723)
Q Consensus 504 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (723)
..|+..|+..|..+|+.+|..+-+ ..+.|....-...+ .|- .+-+-+++++++|...|+-||-
T Consensus 96 k~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdk 158 (406)
T KOG3941|consen 96 KYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDK 158 (406)
T ss_pred HHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCch
Confidence 456677777777777777765532 11222222111111 111 1223456677777777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 004922 584 VAYTTAIKVCVRSKR 598 (723)
Q Consensus 584 ~~~~~li~~~~~~g~ 598 (723)
.+-..|+++|.+.|-
T Consensus 159 E~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 159 EIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHhccccc
Confidence 777777777766654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.17 Score=49.78 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=84.5
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.+.+.|++..|...|+++.+. +.-.. .-+.++......- -...+..+...+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~-l~~~~-------------------~~~~ee~~~~~~~---------k~~~~lNlA~c~ 267 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSF-LEYRR-------------------SFDEEEQKKAEAL---------KLACHLNLAACY 267 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHH-hhccc-------------------cCCHHHHHHHHHH---------HHHHhhHHHHHH
Confidence 467999999999999988763 11100 0111111111110 112345566677
Q ss_pred hcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCH-HHH
Q 004922 202 VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY-MKS 275 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~a 275 (723)
.+.+++..|++..+++ |.+.-+.+.-..+|...|+++.|+..|..+.+ +.| |..+-+.++..-.+...+ +..
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766553 56667788888888899999999999999988 455 455555666554444444 444
Q ss_pred HHHHHHHHhC
Q 004922 276 RAIYEDLRSQ 285 (723)
Q Consensus 276 ~~~~~~m~~~ 285 (723)
.++|..|...
T Consensus 346 kk~y~~mF~k 355 (397)
T KOG0543|consen 346 KKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhc
Confidence 7888888764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.5 Score=39.28 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+.+|--+.+.+...|+.++|..+|+-.+..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 346667777777777777777777776655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.6 Score=37.46 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHH
Q 004922 411 AGLVEQAMHLFEE 423 (723)
Q Consensus 411 ~g~~~~a~~~~~~ 423 (723)
.+++++|.++|.+
T Consensus 27 ~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 27 SNKYEEAAELYER 39 (288)
T ss_pred CcchHHHHHHHHH
Confidence 3455555555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.6 Score=42.56 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--hC----CHHHHHHHHHHhhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--AC----QFDRAFRLFRSWTLS 462 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~l~~~~~~~ 462 (723)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ...++..+|+.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34455667777777777666655553333222 11 234555666666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.47 E-value=7.4 Score=40.79 Aligned_cols=393 Identities=10% Similarity=0.060 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHH-hcCCHHHHHHHHHH
Q 004922 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG-KKRDLVSALRAYDA 246 (723)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 246 (723)
+.+..+++.++..- |.-..+|...+..-.+.|..+.+..+|+. +|-+...|......++ ..|+.+...+.|+.
T Consensus 62 ~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44445555554322 54455555555555566666666666655 3545555555433333 45666677777777
Q ss_pred HHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC-----------ChHHHHHHHH
Q 004922 247 SKKH-LSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYK 313 (723)
Q Consensus 247 ~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~ 313 (723)
.... |.. .....|...|..-..++++.....+|++.++.. ...++.....+.+ ..+.+.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 6653 211 244567777776677778888888888777641 2222222221110 1111111111
Q ss_pred HHHHc-CC---CcChhhHHHHHHHHH-HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 314 NMQKL-GV---MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 314 ~m~~~-g~---~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
..... .+ .+.......-++--. ..+..+++..+..+... ..-..+-..-...+....|+.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------------~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------------IHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------------HHHHHHHhhHhHHHHHHhhhh
Confidence 11100 00 000000000000000 00111111111111100 000111112222223333333
Q ss_pred HHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 389 MLSAG---V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 389 m~~~~---~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
-...- + .++..+|..-+..-.+.|+++.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 32221 1 234567888888888899999988888877531 111122333334444445777777766654332
Q ss_pred hhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 004922 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~ 541 (723)
-.. .-.|....+.+.+.-+.++...|..+++.+..
T Consensus 360 i~~---------------------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 360 IHV---------------------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred hcC---------------------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 211 12677888888888888899999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHcCCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHC
Q 004922 542 VGLSPNHI-SWTILIDACGGSGNVEGAL---QILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 542 ~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~ 612 (723)
.- |+.. .-..-+....+.|+.+.+. .++....+. +-+..+.+.+.-- +.-.++.+.|..++.+|.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 63 4433 2233345556788888887 333333322 1222233333322 33468999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH
Q 004922 613 QIQPNLVTYITLLRARSRYGSLHE 636 (723)
Q Consensus 613 g~~p~~~~~~~ll~~~~~~g~~~~ 636 (723)
+.++...|..+++.+.-.+...+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCcchh
Confidence 67788999999998887776554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=2 Score=36.97 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=71.0
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC---cchHH-----HHHHHHHhcCC
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFC-----NFVREFGKKRD 236 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~-----~l~~~~~~~~~ 236 (723)
+.+.+..++|+.-|..+.+.|...-.+......+....+.|+...|+..|+.+-.+ +.... .-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45578899999999998877644333333444455566677777777777664221 11221 11233455666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|++.....+-+...+-+.-...-.+|.-+-.+.|++..|.+.|.++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665554333333444455555556667777777777766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.28 Score=45.77 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
.|+.-+.. .+.|++.+|.+.|...+..+++-. + ...+...+...+..+|++++|..+|..+.+. .|+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~-~----~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNST-Y----TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCc-c----cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 56655544 456889999999999999965421 1 2445556777789999999999999999984 45443
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
-.-+.|+++...+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 244567887778888999999999999998765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.42 Score=44.65 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=49.8
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (723)
+...|++.+|...|...++.. |.+.. .+.+++=|...+...|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 444688888888888887755 33211 1233334555555555555555555
Q ss_pred HHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+.+.-.. | -..++-.|.....+.|+.++|...|+++.+.
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555443211 1 1234445555555556666666666655554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.3 Score=35.99 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|....+||+-.+++--.|+.++|++-+++..+..-..+... |..-...|...|+.+.|..-|+...+.|
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 66678888888888888888888888888776422222222 3333445777888888888888877766
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.3 Score=42.31 Aligned_cols=113 Identities=10% Similarity=-0.154 Sum_probs=49.9
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHH----H
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----V 198 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~ 198 (723)
+...|+..+|-..++++++. .|.+.. .+..--.+|-- .|+.+.-...++++...- .++ ...++.+ .
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~fy---~G~~~~~k~ai~kIip~w-n~d-lp~~sYv~Gmya 182 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHFY---NGNQIGKKNAIEKIIPKW-NAD-LPCYSYVHGMYA 182 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHHh---ccchhhhhhHHHHhcccc-CCC-CcHHHHHHHHHH
Confidence 34556666666666666553 332221 11111112222 455555555555555431 111 1111111 1
Q ss_pred HHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
=.+...|-+++|++..++. +.+..+...+...+...+++.++.+...
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 1233455666655554442 2233444445555556666666665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.91 E-value=11 Score=40.64 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (723)
.-...+.+--+..+...|+..+|.++-.+.+ -||-..|.-=+.+++..+++++-+++-+.++ + +.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhH
Confidence 3344455666677777888888888877776 5788888888888888888888777666553 1 4556678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccc
Q 004922 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQG 679 (723)
Q Consensus 625 l~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~ 679 (723)
+.+|.+.|+.+||.+ ++.+. + + +.....+|.+ |++.+|.+...
T Consensus 751 Ve~c~~~~n~~EA~K---Yiprv---~--~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKK---YIPRV---G--G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhh---hhhcc---C--C----hHHHHHHHHHhccHHHHHHHHH
Confidence 888888888777544 54322 1 1 1156677777 77777776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=11 Score=40.31 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
+....-.|..++...|--++|.+.+-+.. .| ...+..|...++|.+|.++-++.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666667777777777766554321 12 13455666677777777666543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.1 Score=35.52 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH----HHHHHHHHHH
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF----TLEVYKNMQK 317 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~----a~~~~~~m~~ 317 (723)
+....+.+.+++|+...+..+++.+.+.|++ ..+.++...++-+|.......+-...+.... +++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 3445566778889999999999999999987 4555666677777766655555444433333 3344433331
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
.+..++..+...|++-+|.++...... .+......++.+..+.++...-..+|+...+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244566677777888887777665422 1222223445555555554444444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.05 Score=32.84 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 92 (723)
+.++|..+|++ ..+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 34678899999 9999999999999999999863
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=7.5 Score=39.74 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (723)
....+|.+.-+...+.+. .|..+...+..+..-.++++.|...|++....+.. ++...|.+++..++|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455667777777776543 47777777777777788899999999888876433 4567788888888888888888888
Q ss_pred HHHHcCCCcC---hhhHHHHHHHHHHcCChHHHHHHHHH
Q 004922 314 NMQKLGVMAD---MASYNILLKACCLAGNTVLAQEIYGE 349 (723)
Q Consensus 314 ~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~ 349 (723)
+..+.. |. .......++.|+.. .++.|.++|-+
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 866542 33 22333344455544 35666666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=6.7 Score=36.58 Aligned_cols=189 Identities=8% Similarity=0.017 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-.-+....+.|++++|...|+.+.... |...- ...+...++-++-+.+++++|+..+++..+. .|...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHP- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCC-
Confidence 3444455666677899999999999999884 32211 1223335566678999999999999999984 44332
Q ss_pred ccchhhhhHHHHHHhhc-------cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcch
Q 004922 151 DGSGFKLLKNECQRLLD-------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 223 (723)
..-+-.+++....+.. .....+|+.-|+.+++.- |++.-......+ ...+ .+..+
T Consensus 106 -n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~--------------i~~~-~d~LA 167 (254)
T COG4105 106 -NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKAR--------------IVKL-NDALA 167 (254)
T ss_pred -ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHH--------------HHHH-HHHHH
Confidence 1234445554333311 222334444555555433 332211111000 0000 00111
Q ss_pred HH--HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 224 FC--NFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 224 ~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.. .+...|.+.|.+..|..-++.|.+.-.. -....+-.+..+|...|-.++|...-.-+..+
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 22 3678899999999999999999886211 12345666777888888888887766555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.18 Score=32.63 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (723)
..+..++..|...|++++|+.+|+++++. .|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 45778999999999999999999999999 666443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.6 Score=40.87 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc-CCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~ 149 (723)
...+..+..+..+.|++++++..--.-+....+- -.......++.++.+.+-+.-++.+++.+-.+-... |..|...
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 4566677888888899888876543333321111 111122445556777777777777777776665542 3333211
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCc----ccccHHHHHHHHhcCCChHHHHHHhhhC-------C
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK----ELDEEFRIVQLCVNKPDVNLAIRYACIV-------P 218 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~ 218 (723)
-......+.++... .+-++.+++.|+......-..+ ....+..++..|.+..++++|.-+..++ .
T Consensus 121 -~gq~~l~~~~Ahlg---ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 121 -GGQVSLSMGNAHLG---LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred -cchhhhhHHHHhhh---HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 11222334444444 6788889998888765432222 2345566777788888888776654432 1
Q ss_pred -CCc------chHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 219 -RAD------ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 219 -~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
++. .+...+.-++-..|+..+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++..
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 111 2333455566677777777777666433 33222 23345556677778888888777776643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.1 Score=45.10 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=104.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhc----cCccchHHHHHHHHhhcCCCcccc
Q 004922 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...+++...=.|+-+.+++++....+.+ +....-..+.+-.+...+..++. ....+.|.++++.+.+ ..|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 3455555566799999999999887643 22222222333334445544443 4566789999999997 466543
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHh--cCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC-c---ch
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-D---IL 223 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~ 223 (723)
.+..... ..+...|+.++|++.|++... ..+++-....+..++-.+....++++|...+..+... . ..
T Consensus 268 ----lfl~~~g--R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 268 ----LFLFFEG--RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred ----HHHHHHH--HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 3322222 222338999999999997664 3333444555666788888899999999998886432 1 22
Q ss_pred HH-HHHHHHHhcCCH-------HHHHHHHHHHHh
Q 004922 224 FC-NFVREFGKKRDL-------VSALRAYDASKK 249 (723)
Q Consensus 224 ~~-~l~~~~~~~~~~-------~~A~~~~~~~~~ 249 (723)
|. .....+...++. ++|..+|.++..
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 234455566766 777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.98 E-value=3 Score=41.35 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCC----------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.|.+.|++..|...|+.+........ ...-..+++.+..++.+.+++.+|+...++.+..+. +|.....
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 45555666666665555433211000 012234678888899999999999999999998864 4888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCC-HHHHHHHHHHhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQ-FDRAFRLFRSWTLS 462 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~-~~~a~~l~~~~~~~ 462 (723)
--..+|...|+++.|...|+++.+. .|+....+.=+..|. +... .+...++|..|-..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999999999999999986 565555554444443 3333 33446788877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.8 Score=41.83 Aligned_cols=157 Identities=17% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChH
Q 004922 229 REFGKKRDLVSALRAYDA--SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 306 (723)
+...-+++++++.++... +.. .-+....+.++..+.+.|..+.|+++..+-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~---------------------- 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH---------------------- 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------------
Confidence 445566888887777652 221 12355688888888888999888877653221
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
-.....+.|+++.|.++.++ ..+...|..|.....+.|+++-|++.|
T Consensus 324 -----------------------rFeLAl~lg~L~~A~~~a~~----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 324 -----------------------RFELALQLGNLDIALEIAKE----------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp -----------------------HHHHHHHCT-HHHHHHHCCC----------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred -----------------------HhHHHHhcCCHHHHHHHHHh----------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12233444555555544221 124445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
.+..+ |..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++.+
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54321 3344444555555555555555544443 144444444455555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=4.3 Score=33.14 Aligned_cols=90 Identities=20% Similarity=0.077 Sum_probs=64.2
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT---ITWSSLINAC 408 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~---~~~~~li~~~ 408 (723)
++...|+++.|++.|.+...+ .+-....||.-..++.-.|+.++|++=+++.++. |.. +. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 556778888888888888764 3456677888888888888888888888887753 332 22 2333344456
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 004922 409 ANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~ 428 (723)
...|+.+.|..-|...-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 67788888888887776665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.1 Score=36.00 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=56.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|+.+...+-.-+....+.|++++|+..|+.+....+... +. ..+--.++-++.+.|++++|+..+++.++ +.|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya----~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP 78 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YA----EQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHP 78 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-cc----HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC
Confidence 334455666677788889999999999999998854221 11 22223667778999999999999999998 566
Q ss_pred ccc
Q 004922 147 LEL 149 (723)
Q Consensus 147 ~~~ 149 (723)
.+.
T Consensus 79 ~hp 81 (142)
T PF13512_consen 79 THP 81 (142)
T ss_pred CCC
Confidence 554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.83 E-value=5.4 Score=33.91 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 514 ~~~~~~~ll~~~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
+....+.++..|++ +..+....+.. ..+......++..|.+.+.++++..++.++.. |...+..
T Consensus 40 ~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~ 104 (140)
T smart00299 40 NPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVT 104 (140)
T ss_pred chhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHH
Confidence 44456667777665 33333333331 12334445566777777777777777766532 2223333
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 593 CVRS-KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (723)
Q Consensus 593 ~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 629 (723)
+... ++.+.|.+++++- -+...|..++..+.
T Consensus 105 ~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 105 LIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 3333 6677777766641 25556666666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=6 Score=34.23 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=80.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH-----HHHHHHhhhcCC
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-----VFNSLMNVNAHD 304 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~ 304 (723)
+.+.+..++|+.-|..+.+.|... .+-............|+...|...|+++-.....|-.. .-.+++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456788899999999998877542 23334444556778899999999999987764444332 112222233466
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+++...-.+.+...+.+.....-..|.-+-.+.|++.+|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666666555444445555666666788888888888888764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.7 Score=36.53 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=48.1
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
.+.|++++|++.|+.+..+- |.+ +-...+...|+.+|.+.+++++|...++
T Consensus 21 l~~~~Y~~A~~~le~L~~ry--P~g---------------------------~ya~qAqL~l~yayy~~~~y~~A~a~~~ 71 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY--PFG---------------------------EYAEQAQLDLAYAYYKQGDYEEAIAAYD 71 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC--CCC---------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34688888888888776644 221 1123556678889999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHH
Q 004922 246 ASKKHLSSPNMYICRTIIDVCG 267 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~ 267 (723)
+..+..+.....-|...+.+++
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHH
Confidence 9888654422234444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.7 Score=41.33 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYIT 623 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 623 (723)
.++..++..+..+|+.+.+...++++.... .-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355667777788888888888888887753 23677888888888888888888888877653 577777777666
Q ss_pred HHHH
Q 004922 624 LLRA 627 (723)
Q Consensus 624 ll~~ 627 (723)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.18 E-value=5.8 Score=34.14 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004922 229 REFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~ 249 (723)
..+..+|+|.+|..+|+++.+
T Consensus 52 ~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 52 WLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 334555666666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.09 E-value=6.1 Score=37.59 Aligned_cols=40 Identities=13% Similarity=-0.116 Sum_probs=17.8
Q ss_pred HHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 208 NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
....+-+..-|.+...-..+...+...|+.+.|.+.+-.+
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.08 E-value=6.8 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.213 Sum_probs=9.7
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGE 349 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~ 349 (723)
+++.|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444455555555444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.03 E-value=22 Score=39.05 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
--++..+++..+.+.+..+.+..-+ -++..|-.+++.+++.+.++...+...++..
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3466777788888888877776643 3788899999999999888777776665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=24 Score=38.82 Aligned_cols=180 Identities=12% Similarity=0.083 Sum_probs=118.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
....-+..+.+...++-|+.+...- +.+++.. ..........+.+.|++++|...|-+-+.. +.|+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~-----~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~---- 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTL-----AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE---- 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH----
Confidence 4455677777888888888776533 3333332 222234455567899999999998777753 55532
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcch--HHHHHHH
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVRE 230 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~ 230 (723)
.++ .+.+..+..+-..+++.+.+.+... ......|+..|.+.++.+.-.++.+..+..... ....+..
T Consensus 403 -----Vi~---kfLdaq~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~I 472 (933)
T KOG2114|consen 403 -----VIK---KFLDAQRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEI 472 (933)
T ss_pred -----HHH---HhcCHHHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHH
Confidence 122 3445677888888899998888554 444567899999999999988888887744333 3345566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+-+.+-.++|..+-.... .+.+....++ -..+++++|++.+..+.
T Consensus 473 lr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 666666666665544432 2444555554 35688999999988765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=5.7 Score=40.56 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=57.7
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFN 295 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~ 295 (723)
+.|+.+...+.....-.++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+.. .........
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 555566666666666677788888888887763 343 3445555555666788888888888755542 122233334
Q ss_pred HHHhhhc-CChHHHHHHHHH
Q 004922 296 SLMNVNA-HDLKFTLEVYKN 314 (723)
Q Consensus 296 ~ll~~~~-~~~~~a~~~~~~ 314 (723)
..+..|. ...+.+.++|-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCchhhhHHHHhh
Confidence 4443333 566777776654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.4 Score=37.79 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..+..+...|++.|+.+.|.+.+.++.+....|. ...+-.+|......|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577778888888888888888888877654444 33566677777778888888888777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.67 E-value=32 Score=38.30 Aligned_cols=265 Identities=10% Similarity=0.020 Sum_probs=134.7
Q ss_pred cccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH----HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004922 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE----FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (723)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (723)
..........|...|.+++|+...-.+.+. .....++.- +...+++.--+.+.+.+...-...++...-.-+-..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~ 425 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP-EMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL 425 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH-HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Confidence 444555666677777777777655444322 222222222 223333333333332221110000111111111223
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccc-------HHHHHH---HHhhhcCChHHHHHHHHHHHHc----CCCcChhhHHHHHH
Q 004922 267 GICGDYMKSRAIYEDLRSQNVTLN-------IYVFNS---LMNVNAHDLKFTLEVYKNMQKL----GVMADMASYNILLK 332 (723)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~---ll~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~ 332 (723)
....++++|..+..++...-..|+ ...|++ ++..+.++++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456889999999888765421221 123333 3445668888887777666443 23345666777778
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH-----HHHHccCC--HHHHHHHHHHHHHCC--CC----CCHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-----KVFADAKW--WQMALKVKEDMLSAG--VT----PNTI 399 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll-----~~~~~~g~--~~~a~~~~~~m~~~~--~~----p~~~ 399 (723)
+..-.|++++|..+..+..++.+. .+...+..+. ..+...|. +.+.+..|....... -. +-..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 888899999999998888775422 2333332222 22445663 333444444433221 01 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQ--C--CNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
++..++.++.+ .+.+..-...-.+.| ..|... . +..+...+...|+.++|...+.++..-.
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44455555554 333332222222111 122222 1 2356777888999999999998887643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.59 E-value=2 Score=38.31 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
....+..++..|.+.|++++|...|.++.+....+... ..++-++|+.....|++..+...+.++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998887776643 556667888888999999999988887764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.57 E-value=15 Score=34.37 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccH--HHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI--YVFNSL 297 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~--~~~~~l 297 (723)
.+..-+..-.+.|++++|.+.|+.+..+.+- | ...+.-.++.++-+.+++++|+..+++....-.. ||. ..|-..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444445556678888888888888764321 1 3445556666777888888888888887766332 332 222222
Q ss_pred Hhhh------cCChHHHHHHHHHH---HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHH
Q 004922 298 MNVN------AHDLKFTLEVYKNM---QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (723)
Q Consensus 298 l~~~------~~~~~~a~~~~~~m---~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (723)
+..+ .+|...+.+.|..+ +.. =||.. =..+|......+... =...=..
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~--------LA~~Em~ 172 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA--------LAGHEMA 172 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH--------HHHHHHH
Confidence 2211 12333333333333 332 12211 111222222221110 0001123
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+.+-|.+.|.+..|..-++.|++. .+-+ ...+-.|..+|.+.|-.++|...-.-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445677778888888888887765 2212 224455666777777777777766655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.49 E-value=8.7 Score=31.59 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC
Q 004922 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
+...+...+..+..+|+-+.-.+++.++.+. -++++...-.+..||.+.|+..++. +++++..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~---ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREAN---ELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH---HHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHH---HHHHHHHHhchH
Confidence 5556777888888999999999999988753 4789999999999999999966644 488888888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.47 E-value=13 Score=35.85 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=20.1
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
...|-+++|++.-++..+.+.. |...-.++...+.-.|++.++.++.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHhccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHH
Confidence 3444444444444444443321 3333444444444444444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.3 Score=29.87 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
+|..|+..+.+.|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.41 E-value=17 Score=34.75 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=22.3
Q ss_pred hcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 202 VNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
...++..+|...++. .|.+..+-..++..|...|+.+.|..+++.+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334444444443333 23444444455555555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.2 Score=28.78 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=10.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
.+...|.+.|++++|.++|++.++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.4 Score=39.41 Aligned_cols=78 Identities=9% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNI 438 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 438 (723)
.++..++..+...|+++.+...++.+....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667777788888888888888888877654 778888888888888888888888887765 477777776655
Q ss_pred HHHH
Q 004922 439 LLQA 442 (723)
Q Consensus 439 ll~~ 442 (723)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.03 E-value=23 Score=35.67 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
+...++-+|....+|+...++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556888888888888888887641 11111111223334455 7888888888888665555777777777
Q ss_pred HHHHH
Q 004922 439 LLQAC 443 (723)
Q Consensus 439 ll~~~ 443 (723)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.77 E-value=12 Score=32.36 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
..-.+.++.+++..+++.+.- +.|.. .++..++ +...|+|.+|..+|+.+.... |....-..|+..|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 344577899999999999987 44544 3444444 789999999999999987653 3333344555544
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCEP 431 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~ 431 (723)
.....-..-...-+++...+-.|
T Consensus 88 L~~~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPSWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChHHHHHHHHHHhcCCCh
Confidence 44333333333444555554333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.65 E-value=5.1 Score=32.89 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=50.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
........-++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455556678888999999999999998753 3478888899999999999999999999999999864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.49 E-value=7.7 Score=32.78 Aligned_cols=62 Identities=13% Similarity=-0.014 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..+.|+.+...-...++++++..+++.+.-.. |.....-..-+..+...|++.+|.++++.+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 34444444433344788888888888887644 544433333333333344444444443333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.12 E-value=17 Score=32.90 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh-hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+.+||-+.-.+...|+++.|.+.|+...+....-+-...|--|.. +.|++..|.+-|...-..+ +.|+. -...+-.-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPf-R~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPF-RSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChH-HHHHHHHH
Confidence 446777777777777777777777777766443343444444443 4467777766555554443 22221 11122222
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKWWQMALKVKEDMLSAGVT------PNTITWSSLINA 407 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~li~~ 407 (723)
...-++.+|..-+.+--. ..|..-|...|..|. ..-..+ .+++.+....-. .=+.||--+..-
T Consensus 177 E~k~dP~~A~tnL~qR~~-------~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAE-------KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HhhCCHHHHHHHHHHHHH-------hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 233345555443322111 133333333332222 111111 222222221100 013456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 004922 408 CANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~ 427 (723)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 77788888888888776644
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.94 E-value=19 Score=33.32 Aligned_cols=200 Identities=16% Similarity=0.050 Sum_probs=96.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHH-H
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-M 298 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l-l 298 (723)
..+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444555666666666666666665531 122344455556666666666677777776666543222 12222222 2
Q ss_pred hhhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHc
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFAD 375 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~ 375 (723)
....++++.+...+........ ......+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHH
Confidence 3333555555555555533110 012222222333344556666666666665542 111 23445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666665543211 1222333333333444555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.64 E-value=1 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888854
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=88.55 E-value=8.4 Score=32.58 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQ-----IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (723)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~ 660 (723)
.|+++.-....+.+.-..++++.+.... -.-+..+|.+++.+.++...-+. -++.+|+.|.+.+.+++..-|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~--~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL--TSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH--HHHHHHHHHHHcCCCCCHHHHH
Confidence 3555555555555555555555443110 02355667777777755554222 2566777777777778888888
Q ss_pred HHHHHHHhhhhh
Q 004922 661 ELIEEWCEGVIQ 672 (723)
Q Consensus 661 ~li~~~~~g~~~ 672 (723)
.+|.+..+|...
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 888877776433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.19 E-value=21 Score=32.80 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc--CCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 227 FVREFGKK-RDLVSALRAYDASKKH--LSSPNMYICRT---IIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 227 l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
+...|... .+++.|+..|+..-+. |-..+...-.. +...-+..+++.+|+++|+++....+.-+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44444443 5666666666665442 11122222222 23334556788888888888776544333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.10 E-value=17 Score=31.74 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004922 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~ 457 (723)
.++++.+.+.++.|+...+..+++.+.+.|+...-..++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566667778888888888888888877666555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.94 E-value=18 Score=37.26 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.|....-+.|+.++|++.|.+|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4667777889999999999998764332 2345788889999999999999998887654
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=45 Score=36.25 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCCCcccccHHHHHHH-----HhcCCChHHHHHHhhhC---------CCCcchHHHHHHHHHhcC-
Q 004922 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIV---------PRADILFCNFVREFGKKR- 235 (723)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~---------~~~~~~~~~l~~~~~~~~- 235 (723)
...|.++++...+.+.. .....++.. .....+.+.|+.++... ...+.+.+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 45788888877766622 122222222 33456777777777664 123445666777777643
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh----cCChH
Q 004922 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN----AHDLK 306 (723)
Q Consensus 236 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~ 306 (723)
+.+.|..+|......|. |+....-..+..... ..+...|.++|...-+.|.. +...+.+++... ..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56678888888777654 443333222222222 24567888888888877743 233333333221 23677
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
.|..++++....| .|...--...+..+.. +..+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7888888877776 3332222223333434 666666666655554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.41 Score=28.81 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=14.3
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455556666666666666666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.32 E-value=31 Score=33.89 Aligned_cols=127 Identities=10% Similarity=0.029 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccHHHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHL-----SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNIYVFNS 296 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~ 296 (723)
++..++.-.+.++++++.|+...+.- .-....+|-.|...|.+..|+++|.-......+ .++.--..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555555666666665543311 011234566666666666666665544433322 122211222222
Q ss_pred HHhh-------hcCChHHHHHHHHHH----HHcCCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 297 LMNV-------NAHDLKFTLEVYKNM----QKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 297 ll~~-------~~~~~~~a~~~~~~m----~~~g~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+... ..|....|.+.-++. ...|-.+ -......+.+.|-..|+.+.|+.-|++.-.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2211 114444444444433 2233221 123344566778888888888777776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.5 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (723)
..|..++..+...|++++|+..|+++++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999998 554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.8 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.6 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
..+..+...+...|++++|+..+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.31 E-value=3.9 Score=38.95 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=73.4
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.|.+....+...++........++++...+-++++..... ..++.. -.++++.+ ..-+.++++-++..=++.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~-~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW-YLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh-hhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 3445566666666666666777888888777776421111 112221 12223322 33456788888888888999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
.++++.+|+.+.+.+++.+|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.38 E-value=7.3 Score=40.75 Aligned_cols=124 Identities=11% Similarity=0.085 Sum_probs=85.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+.++|-.++|+++ -..|+. .+.+.++ .|+.+.|.++..+ .++..-|..|+.+..
T Consensus 624 le~~g~~e~AL~~-------s~D~d~-----rFelal~-------lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 624 LESQGMKEQALEL-------STDPDQ-----RFELALK-------LGRLDIAFDLAVE-------ANSEVKWRQLGDAAL 677 (794)
T ss_pred hhhccchHhhhhc-------CCChhh-----hhhhhhh-------cCcHHHHHHHHHh-------hcchHHHHHHHHHHh
Confidence 4566666665554 123332 4555555 6999999887654 345566889999999
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
..+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|. .|. -.-+|...|+++++.+++..-
T Consensus 678 ~~~~l~lA~EC~~~a~d----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcccchhHHHHHHhhcc----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 99999999999887644 77788888888888776666666666543 222 223456789999888887653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=50 Score=34.28 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=123.5
Q ss_pred HHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004922 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256 (723)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 256 (723)
.|+-...+|-+......++..+.+.-+....+.++..+ ..+-.++..+++.|... ..++-..+|+++.+..+ -|+
T Consensus 55 g~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDv 132 (711)
T COG1747 55 GIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDV 132 (711)
T ss_pred HHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhH
Confidence 34433444555556666777777666666555555553 44557888999999988 67888899998888654 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--c---cHHHHHHHHhhhcCChHHHHHHHHHHHHc-CCCcChhhHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--L---NIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNIL 330 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~---~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l 330 (723)
..-..|...|-+ ++.+.+...|.....+=++ . =...|.-+......+.+....+...+... |...-...+.-+
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 445555555544 8888888888887655222 1 13467777776677888888888877653 333345556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 331 l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
-.-|....++++|.+++..+.+. -..|...-..++..+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~-----d~k~~~ar~~~i~~lR 250 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH-----DEKDVWARKEIIENLR 250 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh-----cchhhhHHHHHHHHHH
Confidence 67888889999999999977763 2344444445554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.78 E-value=69 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.033 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-----HHHHHHHHHH--HHHhCCHHHHHHHHHH
Q 004922 409 ANAGLVEQAMHLFEEMLQAGC-EPN-----SQCCNILLQA--CVEACQFDRAFRLFRS 458 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~ll~~--~~~~g~~~~a~~l~~~ 458 (723)
+-.+++..|...+..+.+..- .|+ ...+...+.| +...|+.+.|...|.+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 346889999999998886421 111 2223333332 3356999999999973
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=13 Score=33.11 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l 158 (723)
.-+.++|++.+|..-|..+++.++.-.. -. ..-.+.+-..++.+.+.++.|++-..+.++ +.|. ...+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~--e~-rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pt------y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTST--EE-RSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPT------YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccH--HH-HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCch------hHHHH
Confidence 3444555555555555555555432111 10 011112333344455555555555555554 3331 11122
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhc
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEF 184 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (723)
.+-+..+-+...+++|+.-|.++++.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 22222333345555555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.54 E-value=24 Score=29.96 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
...++++++..+++.+.- +.|+. .++...+ +...|+|.+|..+|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrv------LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV------LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH------hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 357899999999999987 34443 3455444 788999999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.27 E-value=72 Score=35.28 Aligned_cols=181 Identities=11% Similarity=0.025 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHHh-hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc
Q 004922 70 RNDYYADMASKLA-KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (723)
Q Consensus 70 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 148 (723)
....+-.++..|. ...+++.|+..+++.....-.++-...-... -.-++..+.+.+... |...+++.++.--....
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~--~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC--QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 4566677788777 5588999999999887775443322221111 112344455555555 88888887764111111
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHH
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (723)
..+...+..+ ++...+. .+++..|++.++.+........+.. ..++..++
T Consensus 135 ~~w~~~frll-~~~l~~~-~~d~~~Al~~L~~~~~~a~~~~d~~----------------------------~~v~~~l~ 184 (608)
T PF10345_consen 135 SAWYYAFRLL-KIQLALQ-HKDYNAALENLQSIAQLANQRGDPA----------------------------VFVLASLS 184 (608)
T ss_pred hhHHHHHHHH-HHHHHHh-cccHHHHHHHHHHHHHHhhhcCCHH----------------------------HHHHHHHH
Confidence 1112233332 1111111 2677778887777654332111110 12222222
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 004922 229 RE--FGKKRDLVSALRAYDASKKHL---------SSPNMYICRTIIDVC--GICGDYMKSRAIYEDLR 283 (723)
Q Consensus 229 ~~--~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 283 (723)
.+ ..+.+..+++.+..+.+.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 234555666766666653221 124566777777754 45677777777666654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.64 E-value=10 Score=29.18 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
.-+..+-++.+....+.|++....+-+++|-+.+++..|.++|+.++.. ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-----~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-----CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----ccCchhhHHHHH
Confidence 3456677777777888999999999999999999999999999988742 222344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.62 E-value=3.2 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.7 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 101 (723)
..+++.++..|...|++++|+.++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999988763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.03 E-value=7.3 Score=30.31 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 567 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.82 E-value=3.8 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+++.|...|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3467777788888888888888887765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.71 E-value=15 Score=35.20 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CcccHHHHHHHHhhhc-CChHHHHHHHHHHHHcCCCcChhh
Q 004922 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMAS 326 (723)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~ 326 (723)
|......+-..++..-....+.+.+...+-.++... ..|+.. -.++++.+- -+++.++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 333444455555555555677777777777666541 112211 112222222 255667777777777777788888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
++.+|+.+.+.+++.+|.++.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777776666554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.61 E-value=47 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=43.2
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
+..+.++|+.-|++.++..++-..|. ..++-.+|....+.|++++-.+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34578999999999999865555554 55667788889999999998888887764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.53 E-value=16 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566677777778889999999999999999999999999999886
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.48 E-value=23 Score=27.44 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 627 (723)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.. +..+..+|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 44455666666666667777777777777777777777777777765521 22244456655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.48 E-value=43 Score=35.48 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
-.|+++.|-.++..+. ....+.++..+.+.|-.++|+++-.. || +-|. +....|+++.|.++.
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D-------~d-~rFe--lal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD-------PD-QRFE--LALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC-------hh-hhhh--hhhhcCcHHHHHHHH
Confidence 4466666655443322 23445555666666666666554311 11 1111 111234455554444
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
.+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 332 3566788888888888888888888876553 345555566667666555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 393 GVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
|.. |.-..+|...|+++++.+++..
T Consensus 722 g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 432 2233355667888887776654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.46 E-value=18 Score=32.23 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=65.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
+-+.+.|++++|..-|.....+...-.-..-...|..-..++.+.+.++.|+.-..+.++.++. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456788999999888888774211101112345666677888899999999888888876543 233333445578888
Q ss_pred CCHHHHHHHHHHHHHc
Q 004922 412 GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~ 427 (723)
.++++|+.-|..+...
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8999999999888876
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.17 E-value=45 Score=30.09 Aligned_cols=79 Identities=8% Similarity=-0.020 Sum_probs=58.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCC
Q 004922 557 ACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH---YQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 557 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
-+.+.|+ +.|.+.|-++...+.--++...-.|..-| ...+.+++..++-+..+ .+-.+|+..+.+|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 77888888888766554555555555444 47799999999988874 3447889999999999999998
Q ss_pred hHHH
Q 004922 634 LHEV 637 (723)
Q Consensus 634 ~~~a 637 (723)
.+.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 7764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 5e-15
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 7/144 (4%)
Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAI 590
A + LS C + + A +L + + Y +
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE-VQQCLAVYQDMWK 649
R K+ + +K + P+L++Y L+ R +++CL + M +
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL---EQMSQ 229
Query: 650 AGYKANDTYLKELIEEWCEGVIQD 673
G K + L+ E +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 2e-12
Identities = 37/277 (13%), Positives = 73/277 (26%), Gaps = 47/277 (16%)
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
QMA +++ A +P + L+ ++ + QA Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
+ C+ Q A L K K
Sbjct: 134 FKCCLLTDQLPLAHHLL--------------------VVHHGQRQKRKL----------- 162
Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YN +M + + ++ ++ GL+P+ +S+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 558 CGGSGNVEGALQ-ILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
G G ++ L+ M ++G+ + + R+ LK + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653
V LLR + + + K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 8e-09
Identities = 25/272 (9%), Positives = 65/272 (23%), Gaps = 13/272 (4%)
Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV---KEDMLSAGVTPNTITWSSLIN 406
++ L K +A + +++++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
A G ++ +++ + AG P+ LQ Q Q+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC------LEQM 227
Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
+ + +D+ ++ + V + P T +L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL----PPPVNTSKLLRDVYA 283
Query: 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586
D ++ + + + +VE K ++ + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
+C + K + + P L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 260 RTIIDVCGICGDYMKSRAI---YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
C + + + + R + L + ++N++M A F + V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
++ G+ D+ SY L+ E ++ + +G+ +F + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALF-TAVLLSEED 247
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + KVK P + S L+ L + C Q
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 86/565 (15%), Positives = 168/565 (29%), Gaps = 138/565 (24%)
Query: 221 DILFCN---FVREFGKKRDLVSALRAYDASK--KH-LSSPNMYICRTIIDVCGICGDYMK 274
DIL FV F K D+ ++ + + H + S +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD---------------AVSG 63
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ ++ L S+ + + F + V + KF + K Q+ Y
Sbjct: 64 TLRLFWTLLSKQEEM-VQKF--VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRL 119
Query: 335 CLAGNTVLAQ-EIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392
N V A+ + +L+ + L +L I V K W +AL V
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQ 177
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452
I W +L N + ++E L ++ + NI L+ + + Q
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ-AEL 234
Query: 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--------------KDKQSITNTPNFVP 498
RL +S + L + N + + K +T+ +
Sbjct: 235 RRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAAT 285
Query: 499 NSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
+H S + P ++L+K D R + L E+ T +P +S +I
Sbjct: 286 TTHISLDHHSMTLTPDEVK-SLLLK--YLD-CRPQDLPREVLTT--NPRRLS---II--- 333
Query: 559 GGSGNVEGALQILKIMREDG-MSPDVVAYTTAIKVCVRS------KRLKQAFSLFEE--- 608
+ D + TT I+ + +++ S+F
Sbjct: 334 -------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 609 ------------MKHY---QIQPNLVTYITLL---RARSRYGSLHEVQQCLAVYQDMWKA 650
+ + L Y +L+ S S+ + L V +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI-SIPSIYLELKVKLE---- 440
Query: 651 GYKANDTYL-KELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSL---LLEKVAVHLQK 706
N+ L + +++ + + ++ P L + HL+
Sbjct: 441 ----NEYALHRSIVDHY-------------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 707 -------SAAENLAIDLRGL-TKVR 723
+ + +D R L K+R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIR 508
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 2e-11
Identities = 80/514 (15%), Positives = 169/514 (32%), Gaps = 116/514 (22%)
Query: 16 VATQTRLYNHRNKPNKHPVTKLFPL----ASSSSLSSIP--TVH----SSQTALLSTVRR 65
+ + RLYN K+ V++L P + L + S +T + V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 66 DLS--SRND---YYADMASKLAKDGRLE---EFAMIVESVVVSEGNVSKFASMLSLEMVA 117
+ D ++ ++ + + + LE + ++ S + S L + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 118 SGIVKSIREGR-IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEM 173
+ + + ++ +C++ VL + F+ S C+ LL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKA--WNAFNLS--------CKILLTTRFKQVTDF 280
Query: 174 FVGLME---VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC-IVPRADILFCNFVR 229
L+ + + DE ++ ++ +L R PR + +R
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIR 338
Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQ 285
+ D + + K TII+ + + R +++ L S
Sbjct: 339 DGLATWD---NWKHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 286 NV---TLNIY-----------VFNSLMN---VNAHDLKFTLEVY----KNMQKLGVMADM 324
++ L++ V N L V + T+ + + KL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 325 -----ASYNILLKACCLAGNTVLAQE----IYGEVK-HL-EAKGVLKLDVFTYSTIVKVF 373
YNI + ++ Y + HL + ++ +F VF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVF 497
Query: 374 ADAKWWQMALKVKEDMLS---AGVTPNTIT----WSSLINACANAGLVEQAMHLFEEMLQ 426
D ++ + K++ D + +G NT+ + I C N E+ ++ + L
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLP 553
Query: 427 AGCEPN---SQCCNIL---LQACVEACQFDRAFR 454
E N S+ ++L L A EA F+ A +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 60/372 (16%), Positives = 108/372 (29%), Gaps = 104/372 (27%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423
+ Y I+ VF DA K +DM + ++ I +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----------------------DH 53
Query: 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV---------ALGEDYDG 474
++ ++ RLF WTL Q L +Y
Sbjct: 54 IIM---SKDAV---------------SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534
I + +Q T ++ D+ ++ YN+ R++
Sbjct: 94 LMSPIKT---EQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNV---------SRLQ- 135
Query: 535 LMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592
++R L P +LID GSG AL + + + +
Sbjct: 136 PYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTY----------ITLLRAR-SRYGSLHEVQQCL 641
L+ L YQI PN + I ++A R + CL
Sbjct: 193 NSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 642 AVYQDMWKAG-YKANDTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKV 700
V ++ A + A + K L+ + K VT ++ + L+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL------TTRFKQ-----VT--DFLSAATTTHISLDHH 294
Query: 701 AVHLQKSAAENL 712
++ L ++L
Sbjct: 295 SMTLTPDEVKSL 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 41/341 (12%), Positives = 102/341 (29%), Gaps = 103/341 (30%)
Query: 2 RVVFGSSSSSSSAIVATQTRLY---NHRNKPNKHPVTK-LFPLASSSSLSSIP----TVH 53
+++ + + ++ T + +H + K L +P T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL 113
+ ++++ RD + D + K ++ I+ES SL
Sbjct: 327 PRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIES---------------SL 363
Query: 114 EMVASGIVKSIREGRIDCVV---------GVLKKL-NELGVAPLELFDGSGFKLLKNECQ 163
++ + + + V +L + ++ + + + N+
Sbjct: 364 NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------NKLH 412
Query: 164 R--LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVP 218
+ L++ E + + + E + +L+ E+ + + V+ N+ + I P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH--YNIPKTFDSDDLIPP 467
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D F + + + HL + R +
Sbjct: 468 YLDQYFYSHI--------------GH-----HLKNIEHP------------ERMTLFRMV 496
Query: 279 YEDLR-----SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
+ D R ++ + S++N LKF YK
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF----YKP 532
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.08 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.75 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.54 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.45 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.38 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.38 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.28 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.25 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.15 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.14 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.11 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.08 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.07 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.04 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.03 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.01 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.93 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.93 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.84 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.82 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.78 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.75 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.74 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.64 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.59 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.41 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.09 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.82 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.33 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.56 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.63 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.87 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.12 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.88 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.75 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.14 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.68 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.34 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.78 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.91 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.37 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.72 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 80.99 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.48 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.18 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=318.13 Aligned_cols=381 Identities=6% Similarity=-0.019 Sum_probs=299.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCcccHHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~m~~~g~~~~~~~~~~l 297 (723)
..+|+.++..|.+.|++++|+++|+++.+.++ .+...+..+...+...+..+.+. .+ +..+...+..+...+|+.+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 57788899999999999999999999987542 25566666666554443332221 11 4555555545555666666
Q ss_pred Hhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 298 MNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 298 l~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
+..+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++... .+.+..+++.++.+|.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE 351 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH
Confidence 66655 6888999999998765 578999999999999999999999999998863 23466789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.|++++|..+++++.... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998654 3478889999999999999999999999998753 45688999999999999999999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~ 533 (723)
|+++.... +.+..+|+.+..+|. ++.++|.
T Consensus 430 ~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 430 YTTAARLF------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHTT------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99887542 346677888888876 4789999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|+.++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999987643 37888999999999999999999999999875 66787 7899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665 (723)
Q Consensus 608 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~ 665 (723)
++.+.+ ..+..+|..+..+|.+.|++++| .+.|+++.+.... +...+..+...
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLA---ITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHH---HHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 988753 34789999999999999997774 4578888775432 34455544443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=318.59 Aligned_cols=483 Identities=12% Similarity=-0.008 Sum_probs=389.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|......|..++..+.+.|++++|+.++++++...+++ .. +..++..+.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--ND-------AFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--hH-------HHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 43457789999999999999999999999999774433 22 234566789999999999999998753 22
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC--------------CCCcccccHHHHHHHHhcCCChHHHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (723)
+. ..+..++..+.. .|++++|+.+|+++.... ..+.+...|..++..+.+.|++++|.+
T Consensus 149 ~~----~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SS----ACRYLAAFCLVK---LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CH----HHHHHHHHHHHH---TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ch----hHHHHHHHHHHH---HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 355555555444 899999999998532111 012347789999999999999999999
Q ss_pred HhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 213 YACIV----PRADILFCNFVREFGKKRDLVSALRA---YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.|+.+ |.+..++..++..+...+..+.+... +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99885 55666777776666554433332221 455555444445667888888999999999999999999876
Q ss_pred CCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH
Q 004922 286 NVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (723)
Q Consensus 286 g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~ 363 (723)
+++..+|+.+...+. |++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++|+.+... .+.+.
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 373 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKA 373 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccH
Confidence 578889988888754 89999999999998876 457889999999999999999999999999863 34578
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
.+|+.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 89999999999999999999999999876433 68899999999999999999999999998874 55888999999999
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
.+.|++++|.++|+++.... +.+..+|+.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~ 483 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELGV 483 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHHH
Confidence 99999999999999987542 456788999988
Q ss_pred HHh--hcHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004922 524 ACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (723)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (723)
.|. ++.++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 887 4789999999999876 66787 7899999999999999999999999999864 3478999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 004922 596 SKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRAR 628 (723)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 628 (723)
.|++++|.++|+++.+. .| +...+..+...|
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999974 56 455555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=271.89 Aligned_cols=214 Identities=16% Similarity=0.211 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+||++|.+|++.+....+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 445555666666554433 3577788888888888888888888888888888888888888887665432210
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m 539 (723)
. .++.++|.++|++|
T Consensus 82 -----------------------------------------------------~------------~~~l~~A~~lf~~M 96 (501)
T 4g26_A 82 -----------------------------------------------------P------------NPGLSRGFDIFKQM 96 (501)
T ss_dssp -----------------------------------------------------C------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------h------------cchHHHHHHHHHHH
Confidence 0 01356889999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 620 ~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
||++||.+|++.|+.++ |++++++|.+.|..|+..||+.|+..|+.
T Consensus 177 ty~~Li~~~~~~g~~d~---A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 177 ELAALLKVSMDTKNADK---VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCHHH---HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999766 56699999999999999999999999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=260.99 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---------VEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~ 433 (723)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 446788889999999999999999999999999999999999999887654 68899999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|+++|.+|++.|++++|.++|++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~------------------------------------------------------- 130 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQ------------------------------------------------------- 130 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999888887766654
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (723)
Q Consensus 514 ~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (723)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 131 -------------------------M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 131 -------------------------MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp -------------------------HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred -------------------------HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
++.|+.++|.+++++|.+.|+.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-24 Score=218.46 Aligned_cols=294 Identities=13% Similarity=0.091 Sum_probs=174.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhh
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 156 (723)
++..+.+.|++++|+..+++++.. .|+........ ...+...|++++|...++.+.+. .|+.. ..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l------~~~~~~~~~~~~a~~~~~~a~~~--~p~~~---~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLL------SSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhc--CCCch---HHHH
Confidence 345566678888888888877777 55543332222 23366777777777777777763 33221 2333
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
.+..++.. .|++++|+..|++++... | .+..++..++..+.+.|+
T Consensus 72 ~lg~~~~~---~g~~~~A~~~~~~al~~~--p------------------------------~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 72 NLGNVYKE---RGQLQEAIEHYRHALRLK--P------------------------------DFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHH---HTCHHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHcC--c------------------------------chHHHHHHHHHHHHHcCC
Confidence 44443333 677777777777776543 3 334566677777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (723)
+++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|+++.+..
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------ 165 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ------------------------------ 165 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------------------
Confidence 7777777777776431 244566677777777788888888777776541
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004922 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 317 ~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (723)
+.+..+|..+...+...|++++|...|+++... .+.+...|..+...+...|++++|...|++.....+.
T Consensus 166 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 166 ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp ----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 223445555555555566666666666655542 1223345555555566666666666666655554322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666666666666666666665542 2344556666666666666666666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-23 Score=216.42 Aligned_cols=368 Identities=13% Similarity=0.074 Sum_probs=255.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
+.|++++|+..++.+.+.. |++...+..++..+...+++++|..+++.. |.+..++..++..|.+.|++++|+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3799999999998887755 555554555555555555555554444331 3333444444444444444444444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
.|+++.+.. +.+..+|..+..++.+.| ++++|.+.|+++.+.. +.
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g---------------------------------~~~~A~~~~~~al~~~-p~ 133 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAG---------------------------------DMEGAVQAYVSALQYN-PD 133 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHS---------------------------------CSSHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcC---------------------------------CHHHHHHHHHHHHHhC-CC
Confidence 444444321 112334444444444444 4455555555554432 33
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|.+.|+++... .+.+..+|..+...+...|++++|...|+++...++. +...|.
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 207 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYI 207 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 4556777888889999999999999999873 2345678999999999999999999999999987644 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
.+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.|+++....
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 267 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------------------- 267 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------
Confidence 99999999999999999999998864 4468889999999999999999999999887532
Q ss_pred hhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
+.+..+|..+...+. ++.++|...++++.+.. +.+..++..+...+.+
T Consensus 268 -----------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 268 -----------------------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp -----------------------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred -----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 223455666666665 46778888888877753 3466777778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 004922 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSR 630 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 630 (723)
.|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ +.| +...|..+...+..
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 888888888888877642 23466777788888888888888888888775 345 34555555444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-20 Score=196.55 Aligned_cols=444 Identities=11% Similarity=-0.027 Sum_probs=271.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..+.+.|++++|+..|++++... |+ ...+..++..+...|++++|+..|+++++. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 5677888999999999999999999999995 43 223345566689999999999999999984 45432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC------CCCcchH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRADILF 224 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~ 224 (723)
..+..+..+ +...|++++|+..|+++.... |.+.......+..+........+.+.+..+ +.+.. +
T Consensus 74 --~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 145 (514)
T 2gw1_A 74 --KVLLRRASA---NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS-T 145 (514)
T ss_dssp --HHHHHHHHH---HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --HHHHHHHHH---HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-C
Confidence 233344443 444899999999999998866 444333333333332222122111111100 00000 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNV 287 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~g~ 287 (723)
..-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0000000000111111111111111100 1124455555554444 7888888888888776 311
Q ss_pred ccc--------HHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 288 TLN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 288 ~~~--------~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.|+ ...+..+..+ ..|+++.|...|+++.... |+...+..+...+...|++++|...++.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 299 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL---- 299 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----
Confidence 111 2222222222 2356666666666666553 22666677777777777777777777777652
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.+.+...+..+...+...|++++|...++++...... +...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 300 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 300 -DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred -CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 2334556777777777777777777777777766433 55677777777777777777777777777653 33556677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (723)
.+...|.+.|++++|...++.+....... +
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------------------------------~---- 406 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKL----------------------------------------------D---- 406 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTS----------------------------------------------S----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhcc----------------------------------------------c----
Confidence 77777777777777777776654321100 0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (723)
Q Consensus 518 ~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 594 (723)
...-....+..+...+.. .|++++|...++++.+.. +.+...+..+...|.
T Consensus 407 -------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 407 -------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp -------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 000013477788888888 999999999999988753 235778888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (723)
+.|++++|.+.|+++.+. .|+....
T Consensus 461 ~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 999999999999999873 5654433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-19 Score=188.94 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=228.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|.. ...+..++..+.+.|++++|+..|++++.. .|... ..+..++..+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNY------IAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccH------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55567788888 899999999999999999999999999988 55533 2334555668999999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccc---ccHHHHHHHHhcCCChHHHHHHhh
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
+++. .|+.. ..+..+..+ +...|++++|+..|+++.+.. |++. ..+..++..+..
T Consensus 86 al~~--~p~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQL--KMDFT---AARLQRGHL---LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHH--CTTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhc--CCCcH---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 9985 45332 233344443 444899999999999998865 6555 555555443211
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
..+..+...+...|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|++.|+++.+.. +.+..+|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 123334445556666666666666665532 1345566666666666666666666666665542 12344444
Q ss_pred HHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHH------------HHHHHHHcCChHHHHHHHHHHHhhhhcCCccc
Q 004922 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNI------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (723)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~------------ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~ 361 (723)
.+..++ .|+++.|.+.|+++.... +.+...+.. +...+...|++++|...|+.+... .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 444432 356666666666665542 223333333 378899999999999999999873 34
Q ss_pred c-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (723)
Q Consensus 362 ~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (723)
+ ...|..+...+.+.|++++|...++++....+ .+..+|..+..+|...|++++|...++++.+.. +-+...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 4 45788899999999999999999999987643 378899999999999999999999999998853 3345555
Q ss_pred HHHHH
Q 004922 437 NILLQ 441 (723)
Q Consensus 437 ~~ll~ 441 (723)
..+..
T Consensus 367 ~~l~~ 371 (450)
T 2y4t_A 367 EGLEK 371 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-18 Score=183.88 Aligned_cols=312 Identities=10% Similarity=-0.006 Sum_probs=233.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+...+..++..|.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+.+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 90 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----------- 90 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 4445677788888888888888888888887642 2467788888888888888888888888877642
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHH----
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTI---- 369 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~l---- 369 (723)
+.+...+..+..+|.+.|++++|.+.|+++.. ..|+. ..+..+
T Consensus 91 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 91 -----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHH
T ss_pred -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHH
Confidence 23455566666677777777777777777665 22332 333333
Q ss_pred --------HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 370 --------VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 370 --------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
...+...|++++|..+|+++...... +..++..+..+|.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44477888889999998888876433 67788888888888999999998888887753 456788888888
Q ss_pred HHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHH
Q 004922 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (723)
+|...|++++|...|+.+.... +.+...+..+
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~------------------------------------------------p~~~~~~~~~ 251 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD------------------------------------------------QDHKRCFAHY 251 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------------------------------------------------TTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------------------------------------------------CChHHHHHHH
Confidence 8888999999998888876432 1122222222
Q ss_pred ------------HHHHh--hcHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 004922 522 ------------MKACC--TDYYRVKALMNEMRTVGLSPN-----HISWTILIDACGGSGNVEGALQILKIMREDGMSPD 582 (723)
Q Consensus 522 ------------l~~~~--~~~~~a~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 582 (723)
...+. ++.++|...|+.+.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 34443 5789999999999885 344 4478889999999999999999999998752 236
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004922 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLL 625 (723)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 625 (723)
...|..+..+|...|++++|.+.|+++.+ +.|+ ...+..+.
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 88999999999999999999999999987 4564 55555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-19 Score=193.56 Aligned_cols=425 Identities=11% Similarity=0.004 Sum_probs=299.4
Q ss_pred HHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccccc
Q 004922 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (723)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 193 (723)
..+......+.+.|++++|+..|+++++. .|+.. ..+..+..+ +...|++++|+..|+++++.. |++...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~---~~~~~la~~---~~~~g~~~~A~~~~~~al~~~--p~~~~~ 95 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP---VFYSNISAC---YISTGDLEKVIEFTTKALEIK--PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH---HHHHHHHHH---HHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhcC--CchHHH
Confidence 34455666689999999999999999984 45432 333344443 444899999999999999866 788888
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCG 267 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 267 (723)
+..++..+...|++++|...++.+..++......+..+...+....|...++.+.... ..|+. ..+..+.
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 8889999999999999998887654444444444556666677788888888876531 12332 2333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccH-HHHHHHHhhhc----------CChHHHHHHHHHHHHcCCCcC-------hhhHHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNI 329 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~----------~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ 329 (723)
...+.+.+...+...... .+.. .....+...+. ++++.|..+|+++.+.. +.+ ..++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 555665555544333221 1221 12222222221 36788889999888754 222 234666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+...+...|++++|...|+.+.. ..|+...+..+...+...|++++|...++++...... +..+|..+...+.
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 77788899999999999999987 4567778889999999999999999999999887543 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcccc
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (723)
..|++++|...++++.+.. +.+...+..+..+|...|++++|...++.+....
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------- 374 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-------------------------- 374 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------
Confidence 9999999999999998864 4456788889999999999999999999877542
Q ss_pred ccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcC-
Q 004922 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS-----PNHISWTILIDACGGS- 561 (723)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~-----p~~~~~~~li~~~~~~- 561 (723)
+.+...+..+...+. ++.++|...++.+.+.... .....+..+...+...
T Consensus 375 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 375 ----------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp ----------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 223445555555554 5788999988888764211 1122244445666777
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 562 ---------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 562 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.|++..+.
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998753 235778889999999999999999999998874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-19 Score=188.71 Aligned_cols=429 Identities=9% Similarity=-0.012 Sum_probs=283.8
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 239 (723)
.+...|++++|+..|++++... | +...+..++..+...|++++|...++.+ |.+..++..++..|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 3445899999999999998866 4 4556666777777777777777766553 5555667777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~ 317 (723)
|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+..-... ..........+...+..
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 7777777766542 23333333333333333333333333222222111111111110000 00011111111111111
Q ss_pred cCC---------CcChhhHHHHHHHHHH---cCChHHHHHHHHHHHh-----hhhcCCc----cccHHHHHHHHHHHHcc
Q 004922 318 LGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYSTIVKVFADA 376 (723)
Q Consensus 318 ~g~---------~~~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~-----~~~~g~~----~~~~~~~~~ll~~~~~~ 376 (723)
... +.+...+..+...+.. .|++++|...|+++.. ....... +.+...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 110 1123344444444444 7999999999999876 2101000 23456788889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
|++++|...|+++...... ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999887544 8888999999999999999999999998764 446778889999999999999999999
Q ss_pred HHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHH
Q 004922 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKA 534 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~ 534 (723)
+...... +.+...+..+...+. ++.++|..
T Consensus 328 ~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 328 DKAKELD------------------------------------------------PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HHHHHTC------------------------------------------------SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHhC------------------------------------------------hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9876532 223445556656555 47899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHH
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SKRLKQAFSLF 606 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~ 606 (723)
.++.+.+.. +.+..++..+...|.+.|++++|...++++.+... .++ ...|..+...|.. .|++++|.+.|
T Consensus 360 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 360 LFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 999988753 23567888899999999999999999999886321 112 3488899999999 99999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 004922 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (723)
Q Consensus 607 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~ 652 (723)
+++.... ..+..++..+...+.+.|++++ |...|++..+...
T Consensus 439 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 439 EKASKLD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADLAR 480 (514)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHCS
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhcc
Confidence 9998742 3368888999999999999777 4558888877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-17 Score=178.19 Aligned_cols=403 Identities=7% Similarity=-0.043 Sum_probs=211.7
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+.+.|++++|+..|++++.. .|.... .+..+...+...|++++|+..|+++++. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPV------FYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3677888899999999999999999999988 555433 3344555588999999999999999874 45432
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC------------
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------ 217 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------ 217 (723)
..+..+.. .+...|++++|+..|+ ..... |+....+ +..+...+....|...++..
T Consensus 94 ---~~~~~la~---~~~~~g~~~~A~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 94 ---KALLRRAS---ANESLGNFTDAMFDLS-VLSLN--GDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp ---HHHHHHHH---HHHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred ---HHHHHHHH---HHHHcCCHHHHHHHHH-HHhcC--CCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 23333333 3444799999999986 33322 2221111 11122222223344433332
Q ss_pred -------------------------CCCcch----HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC-----
Q 004922 218 -------------------------PRADIL----FCNFVREFGK--------KRDLVSALRAYDASKKHLSSPN----- 255 (723)
Q Consensus 218 -------------------------~~~~~~----~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~----- 255 (723)
...... ...+...+.. .|++++|..+|+.+.+.... +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 111111 1112211111 13556666666666553211 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 004922 256 --MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (723)
Q Consensus 256 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 331 (723)
..++..+...+...|++++|...|+.+.+.. |+...+..+..++ .|+++.|.+.|+++.+.. +.+..++..+.
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHH
Confidence 1234445555555666666666666665542 2233333333332 245555555555555443 23445555555
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
..+...|++++|...|+++... .+.+...+..+...+...|++++|..+++++...... +...+..+...+...
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL-----NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 5555556666666655555542 1123345555555555556666666555555544322 344555555555555
Q ss_pred CCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhc
Q 004922 412 GLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (723)
|++++|...|+++.+.. .......+......+.+.+..
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------------------------------------- 434 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ------------------------------------- 434 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc-------------------------------------
Confidence 55555555555554321 001111122222223333000
Q ss_pred cccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 004922 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (723)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 564 (723)
-..+ .++.++|...++.+.+.. +.+...+..+...|.+.|++
T Consensus 435 -----------------------------------~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 435 -----------------------------------DPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------------cchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 0000 034455566666655542 23567888899999999999
Q ss_pred HHHHHHHHHHHHC
Q 004922 565 EGALQILKIMRED 577 (723)
Q Consensus 565 ~~A~~~~~~m~~~ 577 (723)
++|...|++..+.
T Consensus 479 ~~A~~~~~~al~~ 491 (537)
T 3fp2_A 479 DEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-16 Score=160.57 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=209.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+...|++++|+..|++++.. .|.... .+..+...+...|++++|+..|+++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYI------AYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHH------HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567788899999999999999999999998 555433 3344555588999999999999999984 45332
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC---cccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (723)
..+..+.. .+...|++++|+..|+++.+.. | +....+..++.... ...+..+
T Consensus 72 --~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 --AARLQRGH---LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp --HHHHHHHH---HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred --hHHHHHHH---HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 23333333 3444899999999999998765 5 55555554422110 0112223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCCh
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDL 305 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~ 305 (723)
...+...|++++|...|+.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+ ..|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4444455555555555555444321 234445555555555555555555555554432 1122233322222 22455
Q ss_pred HHHHHHHHHHHHcCCCcChhh------------HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-----HHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMAS------------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----FTYST 368 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~------------~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-----~~~~~ 368 (723)
+.|.+.|+...+.. +.+... ...+...+.+.|++++|...++.+... .|+. ..+..
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 55555555554432 112222 223466788999999999999999873 2332 23556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+...+...|++++|...+++..+..+. +..++..+...+.+.|++++|...|++..+.. +-+...+..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 778899999999999999999986433 78899999999999999999999999998863 334555655555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-15 Score=152.19 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=144.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|+..|+.+.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Confidence 4566677778888888888888888776432 356778888888888888888888887776542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc----cHHHHHHH--------
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTI-------- 369 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~----~~~~~~~l-------- 369 (723)
+.+...+..+...+...|++++|...|+.+.. ..| +...+..+
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHH
Confidence 22344555666666666666666666666655 233 22233333
Q ss_pred ----HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 370 ----VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 370 ----l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
...+...|++++|..+++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 56778888999999999888876543 67788888888888999999999998888764 5577788888888888
Q ss_pred hCCHHHHHHHHHHhhhh
Q 004922 446 ACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~~ 462 (723)
.|++++|...++.....
T Consensus 201 ~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKL 217 (359)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999888877653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=186.17 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (723)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345777788888888888888887777653 46777888888888888888888888888888877777888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 624 ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
+|.++++.|+.. ++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~--e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDA--GTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCH--HHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcH--HHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888777777632 1245577778777888887777777777666
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-13 Score=153.37 Aligned_cols=389 Identities=12% Similarity=0.086 Sum_probs=244.2
Q ss_pred HHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccc-hhhhhHHH------------------------HHHhhccc
Q 004922 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS-GFKLLKNE------------------------CQRLLDSG 169 (723)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-~~~~l~~~------------------------~~~~~~~g 169 (723)
.+...+.+|...|.+.+|+++|+++.- .|+.+..+. .-+.++.. +..+.+.|
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 345678889999999999999999993 454222222 22223322 22233456
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 170 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
.+++|..+|++... ....+...+...+++++|.++.++. .++.+|..+..++...|++++|.+.|.+.
T Consensus 1064 lyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 66666666666310 0111112222556666666666655 44677777788888888888888777553
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhH
Q 004922 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327 (723)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~ 327 (723)
.|...|..++..|.+.|++++|++.|...++..-.+...+. +..+++ ++++..... .. .++...|
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele~f----I~---~~n~ad~ 1198 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELEEF----IN---GPNNAHI 1198 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHHHH----Hh---CCCHHHH
Confidence 45667777777788888888888887776655322223333 333333 444432222 22 3455666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (723)
..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++. .+..+|..+..+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 66777777888888888877753 25777778888888888888888765 256778777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcc
Q 004922 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (723)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++......
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le------------------------ 1310 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE------------------------ 1310 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------------------------
Confidence 88888877777765532 4466677788888999999999999997654321
Q ss_pred ccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh----cHHHHHHHHHHHHHcCCCC------CHHHHHHHHHH
Q 004922 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----DYYRVKALMNEMRTVGLSP------NHISWTILIDA 557 (723)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~a~~l~~~m~~~~~~p------~~~~~~~li~~ 557 (723)
.-....|.-+...+++ +..+..++|..-.. ++| +...|.-++..
T Consensus 1311 ------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1311 ------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred ------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHH
Confidence 1223345555555554 34444455443222 333 46678999999
Q ss_pred HHcCCCHHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHH
Q 004922 558 CGGSGNVEGALQILK-------------IMREDGMSPDVVAYTTAIKVCVRSK---------------RLKQAFSLFE 607 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~-------------~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 607 (723)
|.+.|+++.|....- .... -..|...|...+.-|...+ +.+++.++|.
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 999999999884322 1111 1346677777777777655 6666666665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-14 Score=154.22 Aligned_cols=334 Identities=9% Similarity=0.010 Sum_probs=189.9
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 61 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
+.+..+|.+ ...|..++. +.+.|++++|..+|++++.. .|.....+.. .+..+.+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~------~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKL------YIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHH------HHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHH
Confidence 456778888 888888888 47889999999999999998 6665444333 3444678899999999999999
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHH----HHHHHHhc-CCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
+. .|+.. .+..++.... ...|++++|.+ +|++.+.. |..+++...|...+.......
T Consensus 74 ~~--~p~~~----lw~~~~~~~~--~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~---------- 135 (530)
T 2ooe_A 74 MK--VLHID----LWKCYLSYVR--ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE---------- 135 (530)
T ss_dssp TT--CCCHH----HHHHHHHHHH--HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC----------
T ss_pred hc--CCChH----HHHHHHHHHH--HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC----------
Confidence 74 46321 2323322111 12456555554 66665432 333433333433333222100
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
.. . .+...|+++.|..+|++..+. +..+ ...|..........+. .+.
T Consensus 136 ---~~-~-------~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 136 ---AV-G-------SYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp ---CC-S-------STTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred ---Cc-c-------cHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 00 0 012367888888888888772 1111 2233322221110110 011
Q ss_pred HHHHhhhcCChHHHHHHHHHHH------HcC---CCcC--------hhhHHHHHHHHHHc----CCh----HHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGE 349 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~----~~~----~~A~~~~~~ 349 (723)
..++....+++..|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1111111122333443333321 110 1222 12333333222221 222 356667777
Q ss_pred HHhhhhcCCccccHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 350 VKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 350 ~~~~~~~g~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
.... .+.+...|..++..+.+ .|+++ +|..+|++....-.+-+...|..++..+.+.|+++
T Consensus 264 al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 264 CLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 7654 34566777777777664 67766 88888888875212235677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 416 QAMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++...
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888875 343 2 4777777777788888888888888764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-15 Score=147.39 Aligned_cols=302 Identities=9% Similarity=-0.047 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
.+.+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 456667788888888888999999999888877532 345566677777888888888888888776541
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
+.+...+..+...+...| ++++|...|+++... .+.+...|..+...+..
T Consensus 87 ------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 87 ------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-----EKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-----CTTCTHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHH
Confidence 335667777888888888 888899888888762 23346678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.|++++|...++++...... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999988876533 45667778888999999999999999988764 55678888899999999999999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l 535 (723)
+++......... +
T Consensus 216 ~~~a~~~~~~~~----------------------------------------------~--------------------- 228 (330)
T 3hym_B 216 FLDALEKIKAIG----------------------------------------------N--------------------- 228 (330)
T ss_dssp HHHHHHHHTTTS----------------------------------------------C---------------------
T ss_pred HHHHHHHhhhcc----------------------------------------------c---------------------
Confidence 887654321000 0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004922 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (723)
Q Consensus 536 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (723)
....+.+..++..+...|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|.+.|+++.+. .
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 300 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--R 300 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--C
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--C
Confidence 00112345678888999999999999999999998753 235778888999999999999999999998763 4
Q ss_pred C-CHHHHHHHHHHH-HhcCChH
Q 004922 616 P-NLVTYITLLRAR-SRYGSLH 635 (723)
Q Consensus 616 p-~~~~~~~ll~~~-~~~g~~~ 635 (723)
| +...+..+..++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 5 677777777776 4566544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-15 Score=150.41 Aligned_cols=281 Identities=11% Similarity=-0.034 Sum_probs=225.5
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC-CHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-DLV 238 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~ 238 (723)
.+...|++++|+.+|+++++.. |.....+..++..+...|++++|...++.+ |.+..++..+...+...| +++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHH
Confidence 3444899999999999999866 777888888899999999999999987774 777889999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (723)
+|...|+.+.+... .+...|..+...+...|++++|...|+++.+.... +......+.+....|+++.|.+.+++..+
T Consensus 109 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 109 HARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999987532 35778999999999999999999999999886432 22333333333455899999999999988
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC----ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
.. +.+...+..+...+...|++++|...++++........ .+.+...+..+...+...|++++|...+++..+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 65 45678888999999999999999999999887432110 13345688999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCHH
Q 004922 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQFD 450 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~ 450 (723)
.. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 267 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 PQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred cc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 43 67888999999999999999999999987753 34667777777777 3455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-13 Score=143.81 Aligned_cols=346 Identities=12% Similarity=0.035 Sum_probs=265.6
Q ss_pred ccccHHHHHHHHhc----CCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH
Q 004922 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (723)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 259 (723)
+......++..+.. .+++++|...+.+. ..+..++..|...|.. .+++++|...|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556666777766 78888888888764 3455778888888888 889999999999988753 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh------cCChHHHHHHHHHHHHcCCCcChhhHHH
Q 004922 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (723)
Q Consensus 260 ~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 329 (723)
..|...|.. .+++++|...|++..+.| +...+..+-..+ .++++.|.+.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888887 789999999999988876 233333333322 458899999999988864 6777888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 330 ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
|...|.. .++.++|.+.|++... . .+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT---S----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH---C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888887 8899999999998875 2 356677777777775 789999999999988764 55677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhhhhhcccccCCcC
Q 004922 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (723)
Q Consensus 402 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~l~~~~~~~~~~~~~~~~~ 472 (723)
..+...|.. .++.++|..+|++..+.| +...+..+...|... ++.++|...|++..+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 777777877 889999999999988764 556777777777776 89999999998876532
Q ss_pred CCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh-----cHHHHHHHHHHHHHcCCCCC
Q 004922 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPN 547 (723)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-----~~~~a~~l~~~m~~~~~~p~ 547 (723)
+...+..+-..|.. +.++|...|+...+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 22334444444432 6788999998888863 5
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004922 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 548 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 613 (723)
...+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|.+.|++..+.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6777778888887 789999999999998865 57778888888887 789999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-13 Score=148.70 Aligned_cols=403 Identities=10% Similarity=0.057 Sum_probs=249.3
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+...|..++.. .+.|+++.|..+|+. .|.+...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4455555555552 445555555555544 2555566666666666666666666666666653 24555555555
Q ss_pred HH-HHhcCCHHHHHH----HHHHHHhC-CCcc-cHHHHHHHHhhh-----------cCChHHHHHHHHHHHHcCCCcChh
Q 004922 264 DV-CGICGDYMKSRA----IYEDLRSQ-NVTL-NIYVFNSLMNVN-----------AHDLKFTLEVYKNMQKLGVMADMA 325 (723)
Q Consensus 264 ~~-~~~~g~~~~a~~----~~~~m~~~-g~~~-~~~~~~~ll~~~-----------~~~~~~a~~~~~~m~~~g~~~~~~ 325 (723)
.. ....|+.++|.+ +|+..... |..| +...|...+... .++++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 42 223455544443 55544432 4332 344555444432 245566666666666521000012
Q ss_pred hHHHHHHHH-------------HHcCChHHHHHHHHHHHhhhh---cC--Ccccc--------HHHHHHHHHHHHcc---
Q 004922 326 SYNILLKAC-------------CLAGNTVLAQEIYGEVKHLEA---KG--VLKLD--------VFTYSTIVKVFADA--- 376 (723)
Q Consensus 326 ~~~~ll~~~-------------~~~~~~~~A~~~~~~~~~~~~---~g--~~~~~--------~~~~~~ll~~~~~~--- 376 (723)
.|....... ...+++..|..++........ .. .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211110 123456777777766433211 00 02333 24555555333221
Q ss_pred -CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 004922 377 -KWW----QMALKVKEDMLSAGVTPNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 377 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
++. +.+..+|++.+...+. +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 4778899998876433 67888888888775 78876 8999999988632345688899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC-H-
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T- 515 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~- 515 (723)
.+...+.+.|++++|..+|+++... .|+ .
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~ 356 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI-------------------------------------------------EDIDPT 356 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-------------------------------------------------SSSCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc-------------------------------------------------cccCch
Confidence 9999999999999999999988753 333 2
Q ss_pred HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004922 516 TTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIK 591 (723)
Q Consensus 516 ~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~ 591 (723)
..|...+..+. ++.++|..+|+...+... .+...|...... +...|+.++|..+|++..+. .| +...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 36666666654 468899999999987522 223333332222 33689999999999998875 34 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 592 VCVRSKRLKQAFSLFEEMKHYQ-IQP--NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
.+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+.. +++++.+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~---~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK---VEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH---HHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 9999999999999999998753 233 25588888888889999777554 5555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=155.62 Aligned_cols=259 Identities=14% Similarity=0.001 Sum_probs=196.4
Q ss_pred ccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004922 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (723)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (723)
..+..++..+...|++++|...++.+ |.+..++..++..|...|++++|+..|+.+.+.. +.+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 33445555555555555555554442 4555677778888888888888888888887753 236778888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHH------------------HHHHHhhhcCChHHHHHHHHHHHHcCCCc-ChhhHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYV------------------FNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYN 328 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~------------------~~~ll~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~ 328 (723)
..|++++|...|+++.+......... ...+ ...|+++.|...|+++.+..... +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL--LSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH--HHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH--hhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 88888888888888877642211111 1111 14478889999999998764221 578899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+...+...|++++|...|+++... .+.+...|..+...+...|++++|...|+++....+ .+..++..+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 295 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 9999999999999999999999873 234577899999999999999999999999988653 3678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCE----------PNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+.|++++|...|+++.+.... ....+|..+..+|...|+.++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999998874211 12688999999999999999999988643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-12 Score=143.56 Aligned_cols=339 Identities=11% Similarity=0.109 Sum_probs=213.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHH-------------------HhHHHhhhccCcc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMV-------------------ASGIVKSIREGRI 129 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~-------------------~~~~~~~~~~g~~ 129 (723)
.-....+.+|...|.+.+|+.++++.+-... +-....-++...++ ..+...+...|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 3445667788899999999999999983321 00011111111110 1134557789999
Q ss_pred chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 130 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
++|..+|++... +....+.++. ..+++++|.++.++. +....|+.+++++...|++++
T Consensus 1066 EEAf~IYkKa~~---------~~~A~~VLie------~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV---------NTSAVQVLIE------HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHHHcCC---------HHHHHHHHHH------HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence 999999998642 1123344432 268899999998864 456789999999999999999
Q ss_pred HHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 210 A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
|+..|.+. ++...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..... + .+
T Consensus 1124 AIdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1124 AIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 99999886 667888899999999999999999999887754 33334445888899999988543332 2 23
Q ss_pred cHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh------------
Q 004922 290 NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA------------ 355 (723)
Q Consensus 290 ~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------------ 355 (723)
+...|..+-..+ .|+++.|...|... ..|..+...|++.|++++|.+.+++......
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 444555444433 27899999999885 3788899999999999999998876532100
Q ss_pred -------cC-CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 004922 356 -------KG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA--GLVEQAMHLFEEML 425 (723)
Q Consensus 356 -------~g-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 425 (723)
-| .+..+...+..++..|.+.|.+++|+.+++..+... ......|+-+...|++. ++..++.++|..-.
T Consensus 1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 00 011122234445555555555555555555554332 11233444444444432 22222222222111
Q ss_pred HcCCCC------CHHHHHHHHHHHHHhCCHHHHHH
Q 004922 426 QAGCEP------NSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 426 ~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.+++ +...|..++..|.+.|+++.|..
T Consensus 1344 --ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 --NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred --ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1111 34456666666666666666653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=177.33 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=115.6
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
..-..|||+||++||+.|++++|.++|+.|..+...| +.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3446799999999999999999999999998765566 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004922 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (723)
Q Consensus 401 ~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (723)
|+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999998 578999999999999999999999999877664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-12 Score=139.15 Aligned_cols=352 Identities=11% Similarity=0.025 Sum_probs=282.0
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcc
Q 004922 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~ 289 (723)
+.+..+...+...|.. .+++++|+..|....+. .+...+..|...|.. .+++++|...|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3455778888888888 89999999999999885 467788899999998 899999999999999876
Q ss_pred cHHHHHHHHhh--h----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCc
Q 004922 290 NIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 290 ~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
+...+..+-.. . .++++.|.+.|++..+.| ++..+..|...|.. .+++++|.+.|++... .
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~---~--- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE---Q--- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T---
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---C---
Confidence 33333333332 2 458999999999998875 56777788888887 7899999999999876 2
Q ss_pred cccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 004922 360 KLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEP 431 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~ 431 (723)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 367788888888887 899999999999999875 56778888888886 889999999999998764
Q ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc
Q 004922 432 NSQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (723)
Q Consensus 432 ~~~~~~~ll~~~~~----~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (723)
+...+..+-..|.. .++.++|...|++..+.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------------------------------- 289 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------------------------------- 289 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence 56677777777877 899999999999876432
Q ss_pred ccCCCcCHHHHHHHHHHHh-------hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHC
Q 004922 508 RFSFKPTTTTYNILMKACC-------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMRED 577 (723)
Q Consensus 508 ~~~~~p~~~~~~~ll~~~~-------~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 577 (723)
+...+..+-..|. ++.++|...++...+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 290 ------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 290 ------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp ------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 2223333333332 57899999999999865 4566777788887766 889999999999986
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHH
Q 004922 578 GMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~a~~~~~~m~~ 649 (723)
| +...+..+...|.. .++.++|.+.|++..+.| +...+..+-..|.+ .++.++ |...|++..+
T Consensus 361 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A~~~~~~A~~ 431 (490)
T 2xm6_A 361 G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---AWAWFDTAST 431 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHH
Confidence 4 67888899999998 899999999999999865 57788888888887 778665 5668888888
Q ss_pred cCCC
Q 004922 650 AGYK 653 (723)
Q Consensus 650 ~g~~ 653 (723)
.|..
T Consensus 432 ~~~~ 435 (490)
T 2xm6_A 432 NDMN 435 (490)
T ss_dssp HHCC
T ss_pred CCCC
Confidence 8754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=156.03 Aligned_cols=288 Identities=11% Similarity=-0.000 Sum_probs=213.2
Q ss_pred hhccCccchHHH-HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 123 SIREGRIDCVVG-VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 123 ~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
+...|++++|++ .|++..+ +.|+.... ....+......+...|++++|+..|+++++.. |.....+..++..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~--~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQ--FEEENPLR--DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQ 108 (368)
T ss_dssp -----------CHHHHCCCC--CCSSCTTT--TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHh--cCCCCccc--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 345688899988 8887775 34432210 11122233334445899999999999998865 77888889999999
Q ss_pred hcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------H
Q 004922 202 VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT---------------I 262 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l 262 (723)
...|++++|...++.+ |.+..++..++..|...|++++|...|+.+.+.... +...+.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 9999999999988764 777788999999999999999999999999875432 2222221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC
Q 004922 263 IDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (723)
Q Consensus 263 ~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 339 (723)
+..+...|++++|...|+++.+..... +..++..+..+ ..|+++.|...|+++.... +.+..++..+...+...|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 333348899999999999998874331 46666666554 3489999999999998764 4567889999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP----------NTITWSSLINACA 409 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~ 409 (723)
+++|...|+++... .+.+...+..+...|.+.|++++|...|+++....... ...+|..+..+|.
T Consensus 267 ~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 267 SEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 99999999999873 23457789999999999999999999999998653221 2678999999999
Q ss_pred hcCCHHHHHHHHHH
Q 004922 410 NAGLVEQAMHLFEE 423 (723)
Q Consensus 410 ~~g~~~~a~~~~~~ 423 (723)
..|++++|..++.+
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-15 Score=151.10 Aligned_cols=197 Identities=9% Similarity=-0.108 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..++..+.+.|++++|+..|+.+.+.. +.+..+|..+...|...|++++|+..|+++.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3558889999999999999999999998753 2468889999999999999999999998877541
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-----------HHHHHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----------FTYSTI 369 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-----------~~~~~l 369 (723)
+.+..++..+...|...|++++|...|+++... .|+. ..+..+
T Consensus 130 --------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 130 --------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ------NPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHCC--------------
T ss_pred --------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CccchHHHhhhccchHHHHHH
Confidence 334667778888888888888888888888763 2321 122334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
...+...|++++|..+|+++....+. ++..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 56666777777777777777665322 145666666667777777777777777666543 3355566666666666666
Q ss_pred HHHHHHHHHHh
Q 004922 449 FDRAFRLFRSW 459 (723)
Q Consensus 449 ~~~a~~l~~~~ 459 (723)
+++|...|++.
T Consensus 263 ~~~A~~~~~~a 273 (365)
T 4eqf_A 263 SEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=149.55 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.|+.++|.++++++- ....|+.++.++.+.|++++|++.|.+.+ +...|..++..+...|++++|+..++..
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 688899999888862 22478888888888888888888887764 4558888888888888888888877666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhH
Q 004922 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASY 327 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 327 (723)
.+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------~pn~~a~ 125 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------GPNNAHI 125 (449)
T ss_dssp -----------------------CHHHHTTTTT----------------------------------------CC-----
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------------------------CCcHHHH
Confidence 653 3556778888888888888888776663 2444466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (723)
+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+
T Consensus 126 ~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 126 QQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp -----------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 66666666666666666666643 14666666666666666666666665 156666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
|...|+++.|...... +...+.....++..|.+.|.+++|..+++...
T Consensus 187 Cv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666443332 22333334456666666666666666666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-14 Score=148.92 Aligned_cols=256 Identities=13% Similarity=0.016 Sum_probs=193.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (723)
+..++..+.+.|++++|+..++.+ |.+..++..++..|...|++++|+..|+++.+.. +.+..++..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 444444444444444444444432 5556778888888888889999999988888753 23577888888889999
Q ss_pred CCHHHHHHHHHHHHhCCCcccH-HHHH----------HHHhh--hcCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHH
Q 004922 270 GDYMKSRAIYEDLRSQNVTLNI-YVFN----------SLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (723)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~~~~-~~~~----------~ll~~--~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~ 335 (723)
|++++|+..|+++.+.. |+. ..+. .+... ..|++++|.+.|+++...... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99999999998887753 221 1111 11222 336888899999998876422 16888999999999
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|.+.|+++... .+.+..+|..+..+|...|++++|...|+++.+..+. +..++..+..+|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 2446789999999999999999999999999987533 6888999999999999999
Q ss_pred HHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 416 QAMHLFEEMLQAGC---E--------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 416 ~a~~~~~~~~~~~~---~--------~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+|...|+++.+... . .+..+|..+..++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999886421 1 1357789999999999999998887754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-14 Score=148.90 Aligned_cols=370 Identities=11% Similarity=-0.046 Sum_probs=240.1
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---C
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~ 144 (723)
....|+.|+..+...|++++|+..|+++++... .+.. ...-....+.++...|...|++++|+..++++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 467899999999999999999999999877521 1100 011123345677777999999999999999887631 1
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH---hcCCChHHHHHHhhh----C
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC---VNKPDVNLAIRYACI----V 217 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~----~ 217 (723)
.+........+.....+... ...+++++|+..|++.++.. |+++..+..++.++ ...++.++|++.+++ -
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~-~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLK-CGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11111111122222111111 22468999999999999866 88877777766653 446777778777665 3
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH
Q 004922 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 293 (723)
|.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+... -+...
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 6666777776655554 467889999999988753 24678899999999999999999999999987632 23334
Q ss_pred HHHHHhhhc---------------------CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 294 FNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 294 ~~~ll~~~~---------------------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+..+-.++. +..+.|...|....... +.+...+..+...+...|++++|.+.|++...
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 433322211 13466777788777654 45677888899999999999999999999876
Q ss_pred hhhcCCccccHH----HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 353 LEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 353 ~~~~g~~~~~~~----~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..++.. .+..+.. .+...|++++|+..|.+.+... |+....... ...+..++....+.
T Consensus 363 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 363 ------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQKIAKMRLSK 425 (472)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred ------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHHHHHHHHHh
Confidence 233322 2233322 2457899999999999998863 443322222 23444555555554
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
. +.+..+|..+...|...|++++|.+.|++..+.+.
T Consensus 426 ~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 426 N-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp C-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 55778899999999999999999999998876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-14 Score=142.36 Aligned_cols=259 Identities=8% Similarity=-0.064 Sum_probs=197.1
Q ss_pred HHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHH
Q 004922 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
...+...|++++|+.+|+++++.. |.+..++..++..+...|++++|.
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 75 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAA--------------------------------PEREEAWRSLGLTQAENEKDGLAI 75 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334444677777777776665533 334456667777788888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH-----------------HhhhcCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-----------------MNVNAHD 304 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----------------l~~~~~~ 304 (723)
..|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+ +....|+
T Consensus 76 ~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 76 IALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHH
T ss_pred HHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc
Confidence 8888877653 236677888888888888888888888888765321 11122221 1223367
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
++.|.+.++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|..
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999988765 447888999999999999999999999999873 23457789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCHHHHH
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
.++++.+.... +..++..+...+.+.|++++|...++++.+..... +..++..+..++.+.|+.++|.
T Consensus 228 ~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 228 AYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999886533 67889999999999999999999999988753221 4778999999999999999999
Q ss_pred HHHHHhhh
Q 004922 454 RLFRSWTL 461 (723)
Q Consensus 454 ~l~~~~~~ 461 (723)
.+++....
T Consensus 307 ~~~~~~l~ 314 (327)
T 3cv0_A 307 LTYAQNVE 314 (327)
T ss_dssp HHTTCCSH
T ss_pred HHHHHHHH
Confidence 99875543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-14 Score=139.96 Aligned_cols=264 Identities=10% Similarity=-0.106 Sum_probs=176.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|..+|+++.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 5677888889999999999999999887532 467788888999999999999999998877542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHH-----------
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTI----------- 369 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~l----------- 369 (723)
+.+..++..+...+...|++++|.+.++++... .|+. ..+..+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS------QPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------STTTTTC---------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHhHHHHHHHHHH
Confidence 234556666777777777777777777777652 2222 122222
Q ss_pred ---HH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 370 ---VK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 370 ---l~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
.. .+...|++++|...++++...... +...+..+...+.+.|++++|...++++.+.. +.+..++..+...+..
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLAN 218 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 11 256667777777777777665433 56667777777777777777777777766653 3355666666666767
Q ss_pred hCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH
Q 004922 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 525 (723)
.|++++|...++++...
T Consensus 219 ~~~~~~A~~~~~~a~~~--------------------------------------------------------------- 235 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDI--------------------------------------------------------------- 235 (327)
T ss_dssp TTCHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 77777766666554321
Q ss_pred hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHH
Q 004922 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----------DVVAYTTAIKVCV 594 (723)
Q Consensus 526 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~ 594 (723)
.+.+...+..+...|.+.|++++|...++++.+..... +...|..+..+|.
T Consensus 236 ------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 236 ------------------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 01234556666777777777777777777776532111 2556777777777
Q ss_pred HcCCHHHHHHHHHHH
Q 004922 595 RSKRLKQAFSLFEEM 609 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m 609 (723)
+.|+.++|.+++++.
T Consensus 298 ~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 VMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHH
Confidence 777777777776643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-14 Score=137.30 Aligned_cols=252 Identities=9% Similarity=-0.022 Sum_probs=142.7
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
..-.|++.+|+..+++.... +|... ......+.+.|...|+++.|+..++. ..|. ....+..+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~---~~~a~~~la~ 73 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKP-----SSAP---ELQAVRMFAE 73 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhcc-----cCCh---hHHHHHHHHH
Confidence 34478888888888776554 45431 11112345667888888888876543 1221 1123333333
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHH
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
.+...|+.++|++.+++++..+..|++...+..++..+...|++++|++.++. |.+..++..++..|.+.|++++|
T Consensus 74 ---~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 74 ---YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp ---HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 33347888888888888877655566666666666666666666666666665 45555555555566666666666
Q ss_pred HHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 004922 241 LRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (723)
.+.|+.+.+.. |+... ....+..+...|++++|..+|+++.+
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--------------------------------- 194 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--------------------------------- 194 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---------------------------------
Confidence 66666555432 22110 01111222223444444444444433
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~ 392 (723)
.. +.++..++.+..++.+.|++++|...|+++... .+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 195 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 195 KC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 21 345666666666677777777777777766652 12345566666666666666654 45666666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-13 Score=143.18 Aligned_cols=194 Identities=11% Similarity=-0.070 Sum_probs=95.8
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhc-------CCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--------
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-------- 217 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------- 217 (723)
..++.+..++.. .|++++|++.|++.++. ...+.....+..++.++...|++++|...++++
T Consensus 52 ~~yn~Lg~~~~~---~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 52 TMCNLLAYLKHL---KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 355666555544 79999999999887642 112333445556666666666666666555442
Q ss_pred ----CCCcchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCc
Q 004922 218 ----PRADILFCNFVREFGKK--RDLVSALRAYDASKKHLSSPNMYICRTIIDV---CGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
+....++..+..++... +++++|+..|++..+..+ -+...+..+..+ +...++.++|++.|++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 01123344444333332 346666666666555321 133333333333 2233555555555555554321
Q ss_pred ccHHHHHHHHhh------hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 289 LNIYVFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 289 ~~~~~~~~ll~~------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
.+...+..+... ..++++.|.+.+++..... +.+..++..+...|...|++++|...|++...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 122222222111 1134555556655555443 33445555555666666666666666665554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=134.20 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=193.5
Q ss_pred cchHHHHHHHHHHHHhcCCCCcc-cccHHHHHHHHhcCCChHHHHHHhhhC-CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
.|++..|+..+++..... |++ ......+++++...|+++.|+..++.. +++..++..+...+...++.++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 699999999888754433 444 234566788999999999999877664 2233566778888999999999999999
Q ss_pred HHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCc
Q 004922 246 ASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 246 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
++...+..| +...+..+..++...|++++|++.+++ +.+...+..+..+ ..|++++|.+.|+.+.+.. |
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 988765445 567778888899999999999999987 2445555555554 4478999999999988764 4
Q ss_pred ChhhH---HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 323 DMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (723)
Q Consensus 323 ~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 399 (723)
+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++.+...+. +..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 43222 22334444558899999999988873 3457778888888899999999999999998876544 777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 400 TWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 88888888888888865 56888888776 343221 223344555555554433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=147.63 Aligned_cols=327 Identities=9% Similarity=0.070 Sum_probs=132.9
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
|+.+.|.+++++.+.+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl----- 84 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL----- 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH-----
Confidence 4455555555555332 35555555555555555555555331 33445555555555555555544433
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~ 364 (723)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..
T Consensus 85 ----------------------------~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~~ 123 (449)
T 1b89_A 85 ----------------------------QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPNNA 123 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred ----------------------------HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCcHH
Confidence 333332 4567788899999999999999887763 26777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+|..+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 188 (449)
T ss_dssp -------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHH
Confidence 9999999999999999999999976 46999999999999999999999988 37899999999999
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
..|+++.|......+. +.|+. ...++..
T Consensus 189 ~~~ef~lA~~~~l~L~--------------------------------------------------~~ad~--l~~lv~~ 216 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIV--------------------------------------------------VHADE--LEELINY 216 (449)
T ss_dssp HTTCHHHHHHTTTTTT--------------------------------------------------TCHHH--HHHHHHH
T ss_pred HcCcHHHHHHHHHHHH--------------------------------------------------hCHhh--HHHHHHH
Confidence 9999999954432211 12332 2245555
Q ss_pred Hh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 004922 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS--GNVEGALQILKIMREDGMSP------DVVAYTTAIKVCV 594 (723)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~ 594 (723)
|. +..+++..+++...... +-....|+-|.-.|++- +++.+.++.|..- .++.| +...|..+...|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 54 35667777776666433 33445566555555543 3444444444321 12222 2345666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEW 666 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 666 (723)
..++++.|.. .|.+. .|+..--..+.....+-.+.+-.-+|+..+= +..|. .++-|+.++
T Consensus 294 ~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-----~~~p~--~l~~ll~~l 353 (449)
T 1b89_A 294 KYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL-----EFKPL--LLNDLLMVL 353 (449)
T ss_dssp HTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH-----HHCGG--GHHHHHHHH
T ss_pred hhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH-----hcCHH--HHHHHHHHH
Confidence 7777776654 34432 2222222233333344565554434333321 22333 355666655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=121.13 Aligned_cols=201 Identities=11% Similarity=-0.033 Sum_probs=143.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
+|++..++..+...+.+.|++++|...|+...+..+ .+...+..+...+.+.|++++|+..|++..+.. |
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P------- 70 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--P------- 70 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------
Confidence 366677888888899999999999999999887432 367888888899999999999999998887652 2
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
.+...+..+..++... |++++|...|++..+. .+.+...
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 2233344444444444 8888999988888873 2334667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+...+...|++++|+..|++.++.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888888889999999999999988776 578888888888999999999999998888764 4467778888888888
Q ss_pred hCCHHHHHHHHHHhh
Q 004922 446 ACQFDRAFRLFRSWT 460 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~ 460 (723)
.|++++|...|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 899999888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-13 Score=134.60 Aligned_cols=201 Identities=10% Similarity=-0.024 Sum_probs=117.9
Q ss_pred ccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc-cchHHHHHHHHh
Q 004922 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLN 140 (723)
Q Consensus 62 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~ 140 (723)
++..+|+. ...|..+...+.+.|++++|+..+++++.. +|.....+... ...+...|+ +++|+..|++++
T Consensus 89 ai~~~p~~-~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~------g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 89 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFR------RVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhCChhh-HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHH------HHHHHHcccCHHHHHHHHHHHH
Confidence 34555666 777888888888888888888888888888 66655443333 333677786 888888888888
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (723)
+ +.|+.. ..+..+..+ +...|++++|+..|++++... |.+...|..++.++...|++++|+..++++
T Consensus 160 ~--l~P~~~---~a~~~~g~~---~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 160 E--EQPKNY---QVWHHRRVL---VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp H--HCTTCH---HHHHHHHHH---HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HCCCCH---HHHHHHHHH---HHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7 455432 233333333 333688888888888887755 555555555555555555555555554442
Q ss_pred -CCCcchHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 004922 218 -PRADILFCNFVREFGK-KRDLVSA-----LRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDL 282 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 282 (723)
|.+..+|+.+...+.. .|..++| +..|++..+... -+...|+.+..++...| ++++|++.+.++
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4444555555555555 3333444 244444444211 13444555555554444 344444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=118.94 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=165.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cc----HHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LN----IYVFN 295 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~ 295 (723)
..+..+...+...|++++|...|+++.+.. .+..++..+...|...|++++|+..|++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777788888888887777665 56677777777788888888888888777654211 11 23444
Q ss_pred HHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHH
Q 004922 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (723)
Q Consensus 296 ~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~ 373 (723)
.+..+ ..++++.|.+.|++..... |+. ..+...|++++|...++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 44443 3367788888888777643 342 3456677888999988888762 223455788888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
...|++++|...|++....... +..+|..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999999999999998876543 67888888899999999999999999888764 446778888888999999999999
Q ss_pred HHHHHhhhhh
Q 004922 454 RLFRSWTLSK 463 (723)
Q Consensus 454 ~l~~~~~~~~ 463 (723)
..++......
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9998877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-12 Score=118.45 Aligned_cols=197 Identities=11% Similarity=-0.063 Sum_probs=129.2
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|++...+..++..+.+.|++++|...++.. |.+..++..+...+.+.|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 334445555666666666666666665542 66678888899999999999999999999887532 3677888888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 004922 264 DVCGIC-----------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (723)
Q Consensus 264 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 332 (723)
.++... |++++|+..|++..+. . +-+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------------------~-P~~~~~~~~lg~ 126 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------------------------------N-PRYAPLHLQRGL 126 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------------------------------C-TTCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------------------------------C-cccHHHHHHHHH
Confidence 888877 6666666666655543 2 334566677777
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 412 (723)
++...|++++|...|++...+ . .+...+..+..+|...|++++|...|++..+..+. +...+..+...+.+.|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALAL-----E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--
T ss_pred HHHHcCChHHHHHHHHHHHhc-----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcc
Confidence 788888888888888887763 1 45667777777888888888888888888776433 5667777777888888
Q ss_pred CHHHHHHHHHHHHH
Q 004922 413 LVEQAMHLFEEMLQ 426 (723)
Q Consensus 413 ~~~~a~~~~~~~~~ 426 (723)
++++|...+++...
T Consensus 200 ~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 200 KAEEAARAAALEHH 213 (217)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHhh
Confidence 88888877776543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=118.28 Aligned_cols=193 Identities=10% Similarity=0.014 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
..++..++..|...|++++|...|+...+.... ++ ..++..+...|...|++++|...|+++.+.. |+...+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~ 115 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADIL 115 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHHH
Confidence 356677777788888888888888877653211 11 5678888888888888888888888888753 333222
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
...++++.|.+.++.+.... +.+...+..+...+...|++++|...|+++... .+.+...|..+...|.
T Consensus 116 -----~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 116 -----TKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALA 184 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred -----HHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHH
Confidence 22356788888888887754 345677888899999999999999999999874 2346778999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..|++++|...+++..+.... +..+|..+...+.+.|++++|...+++..+.
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999887533 6788999999999999999999999988765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=124.19 Aligned_cols=117 Identities=12% Similarity=-0.046 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHhcCC--CCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
.|++++|+..|+++++... .|.....+..++..+...|++++|...++.+ |.+..++..++..|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999987632 2344556666666777777777776666553 555566666666777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..|+++.+... .+..++..+...|...|++++|...|+++.+.
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766665421 24556666666666677777777766666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-11 Score=117.32 Aligned_cols=223 Identities=14% Similarity=0.032 Sum_probs=156.7
Q ss_pred HHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---CCCcch----HHHHHHHHHhcC
Q 004922 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADIL----FCNFVREFGKKR 235 (723)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~----~~~l~~~~~~~~ 235 (723)
..+...|++++|+..|+++++.. |.+...+..++..+...|++++|+..++.+ +.+... +..+...|...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 34455899999999999998865 777778888888999999999998887764 333333 778888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-hh-hcCChHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV-NAHDLKFTLEVYK 313 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~-~~~~~~~a~~~~~ 313 (723)
++++|+..|+...+... .+..++..+...|...|++++|+..|++..+.. +.+...|..+- .. ..++++.|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887532 356788888888899999999999998887762 22334444333 32 2357777777777
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCC---hHHHHHHHHHHHhhhhcCCcccc------HHHHHHHHHHHHccCCHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~~~g~~~~~------~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
+..+.. +.+...+..+...+...|+ +++|...|+++....... |+ ...|..+...|...|++++|..
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777653 3345566666666766676 666777777776542211 22 1356666666677777777777
Q ss_pred HHHHHHHCC
Q 004922 385 VKEDMLSAG 393 (723)
Q Consensus 385 ~~~~m~~~~ 393 (723)
.|++..+..
T Consensus 243 ~~~~al~~~ 251 (272)
T 3u4t_A 243 AWKNILALD 251 (272)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=118.67 Aligned_cols=204 Identities=12% Similarity=-0.024 Sum_probs=144.3
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
.+|......+..++..+...|++++|+..+++++.. .|... ..+..+...+...|++++|++.|+++.+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSA------DAHAALAVVFQTEMEPKLADEEYRKALAS-- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 345555788899999999999999999999999988 44432 23344555688999999999999999985
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA 220 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 220 (723)
.|+.. ..+..+.. .+...|++++|+..++++...+..|.....+..++..+...|++++|...+... |.+
T Consensus 101 ~~~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 101 DSRNA---RVLNNYGG---FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp CTTCH---HHHHHHHH---HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CcCcH---HHHHHHHH---HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 34321 23333333 344489999999999999873344656666666777777777777777766553 555
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..++..++..|...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666677777777777777777777766532 235556666667777777777777777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-12 Score=122.92 Aligned_cols=155 Identities=7% Similarity=-0.164 Sum_probs=119.9
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+...|++++|+..|+++.+.....+ ......+..+. ..+...|++++|+..|++++... |.....+..++..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD-DERAQLLYERG---VLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH-HHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC-chhHHHHHHHH---HHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 4678999999999999998532111 11122333333 34445899999999999999866 778889999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..|++++|...++.+ |.+..++..++..|...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998874 7778999999999999999999999999998853 4433444444455667888888888
Q ss_pred HHHHHhC
Q 004922 279 YEDLRSQ 285 (723)
Q Consensus 279 ~~~m~~~ 285 (723)
+++....
T Consensus 167 ~~~~~~~ 173 (275)
T 1xnf_A 167 LKQHFEK 173 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-10 Score=117.38 Aligned_cols=373 Identities=12% Similarity=0.007 Sum_probs=169.8
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCCh---HHHHHHhhhC-CCCcchHHHHHHHHHhcC-----C
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIV-PRADILFCNFVREFGKKR-----D 236 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~-~~~~~~~~~l~~~~~~~~-----~ 236 (723)
.+.|++++|+.+|++..+.+ +...+..++..+...|++ ++|...|++. ..++.++..|...+...+ +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 34799999999999988755 334455566666666666 6777666654 224455666666444444 5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCcccHHHHHHHHhhhcCC----hHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD----LKFTL 309 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----~~~a~ 309 (723)
+++|+..|++..+.|. + ..+..|...|...+... ++.+.+......|. +.....-..+....+. .+.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 6677777777666443 1 25555555555544332 23333333333332 2222222222222222 22222
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHcc----CCHHHH
Q 004922 310 EVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMA 382 (723)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~----g~~~~a 382 (723)
.++.... ..++..+..|...|...| +.++|.+.|++... .| .++...+..+...|... +++++|
T Consensus 166 ~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 166 RICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 2222222 122224444555555555 55555555555443 22 22333333444444333 455555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 383 LKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
...|++.. .| +...+..+... + ...+++++|..+|++..+.| +...+..+-..|. .|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~----------- 297 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK----------- 297 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS-----------
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC-----------
Confidence 55555544 21 33334444443 2 23455555555555555443 3344444444443 230
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m 539 (723)
|+ .++.++|...|...
T Consensus 298 --------------------------------------------------g~--------------~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 298 --------------------------------------------------WV--------------PADAKAAEAHFEKA 313 (452)
T ss_dssp --------------------------------------------------SS--------------CCCHHHHHHHHHTT
T ss_pred --------------------------------------------------CC--------------CCCHHHHHHHHHHH
Confidence 00 01344444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004922 540 RTVGLSPNHISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKH 611 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 611 (723)
. . -+...+..|...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++|..+|+...+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3 1 234445555555554 3488889999988887663 3344455555553 4578888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 612 YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 612 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
.|.. +... .+......-..++..++..+.++..+
T Consensus 387 ~g~~-~a~~---~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 387 QDTP-EAND---LATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCCH-HHHH---HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHH---HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6632 2221 22222334444555555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-10 Score=119.65 Aligned_cols=347 Identities=9% Similarity=-0.079 Sum_probs=223.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCcc---chHHHHHHHHhhcCCCcccccc
Q 004922 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..++..+.+.|++++|+.+|+++.+.+ ++.... .+...+...|++ ++|+.+|+++.+. .|.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~---------~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~---- 70 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSEAQV---------GLADIQVGTRDPAQIKQAEATYRAAADT--SPR---- 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGG---------TCC----------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHH---------HHHHHHHccCCCCCHHHHHHHHHHHHhC--CHH----
Confidence 357788888999999999999998875 333221 222235667888 8999999999864 332
Q ss_pred cchhhhhHHHHHHhhc--cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHH---HHHhhhC--CCCcchH
Q 004922 152 GSGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA---IRYACIV--PRADILF 224 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~--~~~~~~~ 224 (723)
....+..++..... .+++++|+..|++..+.+ +...+..++..|...+....+ .+.+... +.+..+.
T Consensus 71 --A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~ 144 (452)
T 3e4b_A 71 --AQARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAG 144 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHH
T ss_pred --HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHH
Confidence 22222221222110 148899999999998855 345788899988877665443 3333332 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..|...|...+.++++......+.+.-...+...+..+...|...| +.++|+..|+...+.|.. +...+..+-..+
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 8899999999866555554333322211233348889999999999 999999999999998743 333222222222
Q ss_pred ------cCChHHHHHHHHHHHHcCCCcChhhHHHHHHH-H--HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 302 ------AHDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 302 ------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
.+++++|.+.|+... . -++..+..|... + ...+++++|.+.|++... .| +...+..|...
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g----~~~A~~~Lg~~ 292 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---AD----QPRAELLLGKL 292 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TT----CHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CC----CHHHHHHHHHH
Confidence 158899999999987 3 466667777766 4 468999999999999876 22 66677777777
Q ss_pred HHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 373 FADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 373 ~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
|. .| ++++|...|++.. .| +...+..|...|.. ..++++|..+|++..+.|. ......+-..|
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y 364 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLF 364 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHH
Confidence 77 55 9999999999887 33 66778888877776 3499999999999988763 33455555555
Q ss_pred HH----hCCHHHHHHHHHHhhhhh
Q 004922 444 VE----ACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 444 ~~----~g~~~~a~~l~~~~~~~~ 463 (723)
.. ..+..+|...|+.....+
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCC
Confidence 53 358899999998876544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=111.28 Aligned_cols=208 Identities=14% Similarity=0.031 Sum_probs=132.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|.+.|+++... .+.+...+..+...|...|++++|.+.++++.+.... +...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 445566666677777777777777776652 1234556666666777777777777777776655332 5566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
+...|...|++++|..+++++.+.+..| +...+..+..++.+.|++++|...+++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------------- 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--------------------- 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Confidence 6666777777777777777666522233 344555566666666666666666654432
Q ss_pred hhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004922 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (723)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 562 (723)
.. +.+...+..+...|...|
T Consensus 170 -----------------------------------------------------------~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 170 -----------------------------------------------------------LN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp -----------------------------------------------------------HC-SCCHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------cC-cccHHHHHHHHHHHHHcC
Confidence 11 123556667777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (723)
++++|..+++++.+.. ..+...+..+...+...|+.++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 8888888888777642 235666777777777788888888888877763 3544333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-10 Score=108.80 Aligned_cols=202 Identities=9% Similarity=-0.056 Sum_probs=118.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++++...... +..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHH
Confidence 3445556666666667777777766666552 1234556666666666666666666666666654322 455666
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhh
Q 004922 403 SLINACANA-GLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (723)
Q Consensus 403 ~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (723)
.+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------ 142 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------------------ 142 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 666666666 666666666666665222222 345555556666666666666655544321
Q ss_pred hhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
. +.+...+..+...+.+
T Consensus 143 --------------------------------------------------------------~-~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 143 --------------------------------------------------------------Q-PQFPPAFKELARTKML 159 (225)
T ss_dssp --------------------------------------------------------------S-TTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------C-CCCchHHHHHHHHHHH
Confidence 0 1134455566666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777777777777666542113455566666666667777777777766654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-10 Score=109.22 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=164.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
+..++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ .++....-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 3456666777777777777777777777762 345667777777777 777777877777777765 22222222
Q ss_pred HHHhhh----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 296 SLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 296 ~ll~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
..+... .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++.... .+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~ 150 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCT 150 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHH
Confidence 223333 567777888887777754 66777778888888 88899999988888762 2556677
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 368 TIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 368 ~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777777 888999999998888764 56777788888888 889999999998888764 36677777
Q ss_pred HHHHHH----hCCHHHHHHHHHHhhhhhc
Q 004922 440 LQACVE----ACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 440 l~~~~~----~g~~~~a~~l~~~~~~~~~ 464 (723)
..+|.+ .+++++|...|++....+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 788887 8888999998888776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-10 Score=109.21 Aligned_cols=201 Identities=9% Similarity=-0.038 Sum_probs=127.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
..++..++..+...|++++|...|+.+.+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 4566777777888888888888888877643 2356677777788888888888888877766532
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~ 379 (723)
+.+..++..+...+... |++++|...++.+.. .+..+.+...+..+...+...|++
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---DPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---STTCSCHHHHHHHHHHHHHHTTCH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---CcCCcchHHHHHHHHHHHHHcCCH
Confidence 22344555566666666 666666666666654 111222345566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
++|...++++.+.... +...+..+...+.+.|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+
T Consensus 130 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6666666666654322 455666666666666777777766666665431145555666666666666666666666665
Q ss_pred h
Q 004922 460 T 460 (723)
Q Consensus 460 ~ 460 (723)
.
T Consensus 209 ~ 209 (225)
T 2vq2_A 209 Q 209 (225)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-10 Score=111.82 Aligned_cols=217 Identities=16% Similarity=0.051 Sum_probs=156.9
Q ss_pred cHHHHHHHHhcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004922 193 EEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (723)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (723)
.+..++..+...+++++|.+.|+.. +.+..++..+...|.. .+++++|+..|++..+.+ +..++..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344444444455555555544442 3344566667777777 788888888888877753 667777777777
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHh--hh----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 004922 267 GI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (723)
Q Consensus 267 ~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 336 (723)
.. .+++++|+..|++..+.+ +...+..+-. .. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 77 788888888888877765 3333333322 33 567888888888887765 56667777788887
Q ss_pred ----cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 337 ----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 337 ----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 89999999999988762 255677888888888 899999999999998875 366778888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 004922 409 AN----AGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 409 ~~----~g~~~~a~~~~~~~~~~~ 428 (723)
.+ .+++++|...|++..+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999888765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=126.62 Aligned_cols=319 Identities=14% Similarity=0.024 Sum_probs=211.7
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC-ccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~ 148 (723)
+...+...+..+...|++++|+..+++++... |..... ....+..+...+...|++++|+..++++.+.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT--LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 35667788899999999999999999999984 332211 1334456677788999999999999987653100 111
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHH
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (723)
. .....+......+...|++++|+..+++++... +.. ++.. ....++..+.
T Consensus 84 ~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------------~~~~----------~~~~~~~~l~ 134 (406)
T 3sf4_A 84 L---GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL--------------NDKV----------GEARALYNLG 134 (406)
T ss_dssp H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------TCHH----------HHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------cccc----------chHHHHHHHH
Confidence 1 122233333334445789999998888776532 100 0000 0024567778
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 229 REFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 229 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
..|...|+ +++|...+++..+. +..+ ...++..+...|...|++++|...|++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888 88888888776442 1112 24568888888999999999999988766
Q ss_pred hCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-
Q 004922 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL- 361 (723)
Q Consensus 284 ~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~- 361 (723)
+. ... .+. .....++..+...|...|++++|...+++...........+
T Consensus 215 ~~--------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 215 LI--------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HH--------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HH--------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 42 111 010 11134677788889999999999999998876433221111
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-P 431 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 431 (723)
...++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+. +.. .
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 1457888889999999999999999988753111 12 457788889999999999999999887653 211 1
Q ss_pred CHHHHHHHHHHHHHhCCHH
Q 004922 432 NSQCCNILLQACVEACQFD 450 (723)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~ 450 (723)
...++..+...+...|+..
T Consensus 346 ~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHhhHhH
Confidence 2345566666666666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-11 Score=120.22 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=123.5
Q ss_pred CCcchHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 219 RADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
.+..+|+.+...+...|+ +++|+..|+++.+... .+..+|+.+..++...|++++|+..|+++++... -+...|..+
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~l 206 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHR 206 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHH
Confidence 334444455555555553 5555555555554321 2344555555555555555555555555554321 122222222
Q ss_pred Hhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCChHHH-----HHHHHHHHhhhhcCCccccHHHHHHH
Q 004922 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTI 369 (723)
Q Consensus 298 l~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (723)
-.+ ..|++++|+..|+++++.. +-+...|+.+..++.. .|..++| ...|++...+ .+-+...|+.+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l 280 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHH
Confidence 222 2245555555555555543 3467778888888888 5555777 4777777763 23355678888
Q ss_pred HHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCC-CHHHH
Q 004922 370 VKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEP-NSQCC 436 (723)
Q Consensus 370 l~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~~-~~~~~ 436 (723)
...+...| ++++|++.+.++ +.. ..+...+..+...|.+.| ..++|+.+++++ .+. .| ....|
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w 356 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYW 356 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 88888877 688888888887 332 335677888888888764 258899999888 544 34 33445
Q ss_pred HHHHHHH
Q 004922 437 NILLQAC 443 (723)
Q Consensus 437 ~~ll~~~ 443 (723)
..+...+
T Consensus 357 ~~~~~~l 363 (382)
T 2h6f_A 357 RYIGRSL 363 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-09 Score=111.50 Aligned_cols=460 Identities=7% Similarity=-0.021 Sum_probs=266.0
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc---cchHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVG 134 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~ 134 (723)
.+.+.+..+|.+ ...|..+++.+.+.|.++.+..+|++++.. .|..+..+... +..-.+.|. ++.+.+
T Consensus 54 ~lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Y------i~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 54 KLNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMR------LSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHH------HHHHHhhCCcchHHHHHH
Confidence 477779999998 999999999999999999999999999999 56554443332 222446677 999999
Q ss_pred HHHHHhhcCC-CcccccccchhhhhHHHHHHhhcc-----chHHHHHHHHHHHHh-cCC-CCcccccHHHHHHHHhcCCC
Q 004922 135 VLKKLNELGV-APLELFDGSGFKLLKNECQRLLDS-----GEVEMFVGLMEVLEE-FRL-PVKELDEEFRIVQLCVNKPD 206 (723)
Q Consensus 135 ~~~~~~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~-----g~~~~A~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~ 206 (723)
+|++.+.... .|+. .++..++.-....... +..+...++|+.++. .|. .+.....|...+........
T Consensus 125 lfeRal~~~~~~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 125 VLARCLSKELGNNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHTCSSSCCCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCCCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999998531 1322 2444444432221110 112344567776553 243 34443444444333222110
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-N-MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
. ..+...++++.+..+|+.+.. ++. + ..+|......-...+. ..+..++.+.
T Consensus 201 ~---------------------~~~eeq~~~~~~R~iy~raL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-- 254 (679)
T 4e6h_A 201 V---------------------NKFEEQQRVQYIRKLYKTLLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-- 254 (679)
T ss_dssp C---------------------SHHHHHHHHHHHHHHHHHHTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--
T ss_pred c---------------------CcHHHHhHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--
Confidence 0 001123446777777777764 211 1 1223222111100010 0011111110
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHc--CC----C-----------c-----C---hhhHHHHHHHHHHcC-
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL--GV----M-----------A-----D---MASYNILLKACCLAG- 338 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~--g~----~-----------~-----~---~~~~~~ll~~~~~~~- 338 (723)
..++..|...+.++... ++ + | + ...|...+..--..+
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 01111222222221110 00 0 0 0 112222322211111
Q ss_pred ------ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 339 ------NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL-KVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 339 ------~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
..+.+..+|++.... .+.+...|...+..+...|+.++|. .+|+...... +.+...|...+....+.
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 122345567766653 3446667777777777788888886 8888887643 33566677777888888
Q ss_pred CCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHhhhh-hcccccC
Q 004922 412 GLVEQAMHLFEEMLQAG---------CEPN------------SQCCNILLQACVEACQFDRAFRLFRSWTLS-KTQVALG 469 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~-~~~~~~~ 469 (723)
|+++.|..+|+.+.+.. ..|+ ..+|...+....+.|+.+.|..+|...... ..
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----- 466 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----- 466 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Confidence 88888888888887631 0132 235777777777888899999999887653 11
Q ss_pred CcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCH
Q 004922 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNH 548 (723)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~ 548 (723)
..+......+.+...+ ++.+.|..+|+...+. .+-+.
T Consensus 467 -----------------------------------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~ 504 (679)
T 4e6h_A 467 -----------------------------------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDG 504 (679)
T ss_dssp -----------------------------------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCH
T ss_pred -----------------------------------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCch
Confidence 1234444445555444 3578888998888876 33455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
..+...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 666777777778889999999999888753222 2457777887777889999999999998874 466555555555
Q ss_pred HH
Q 004922 627 AR 628 (723)
Q Consensus 627 ~~ 628 (723)
-|
T Consensus 583 ry 584 (679)
T 4e6h_A 583 KY 584 (679)
T ss_dssp HT
T ss_pred Hh
Confidence 44
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=111.30 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=122.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|+..|+++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3567777888888889999999888888743 2367788888888888888888888888776542
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 88 --------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHH
T ss_pred --------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHH
Confidence 224455556666666777777777777766653 2234556666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+|...++++...... +...+..+...+.+.|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.
T Consensus 143 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776655322 55666667777777777777777777766653 3456666677777777777777777777665
Q ss_pred h
Q 004922 461 L 461 (723)
Q Consensus 461 ~ 461 (723)
.
T Consensus 221 ~ 221 (243)
T 2q7f_A 221 D 221 (243)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.2e-11 Score=114.20 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=150.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH--HHHHHHHh-
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMN- 299 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~- 299 (723)
.+......+...|++++|+..|+.+.+... .+...+..+...|...|++++|+..|++..+.+..++. ..|..+-.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344445555555566666666655554321 13335555555555556666666666555553211221 11222222
Q ss_pred -hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 300 -VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 300 -~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
...|+++.|.+.|++..+.. +.+...+..+...|...|++++|...|++.... .+.+...|..+...+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHHH
Confidence 22355566666666655543 345678888999999999999999999988762 23355567777624444559
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHhCC
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAG-CEPN------SQCCNILLQACVEACQ 448 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~g~ 448 (723)
+++|...|+++.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+.|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999886433 56778888888888888 778888888877641 1233 2567788889999999
Q ss_pred HHHHHHHHHHhhhhh
Q 004922 449 FDRAFRLFRSWTLSK 463 (723)
Q Consensus 449 ~~~a~~l~~~~~~~~ 463 (723)
+++|.+.|++.....
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-11 Score=119.65 Aligned_cols=296 Identities=15% Similarity=0.036 Sum_probs=187.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC-cccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 149 (723)
...+...+..+...|++++|+..+++++... |.... .....+..+...+...|++++|++.++++.+.... ++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 3455667888899999999999999999984 33221 11334456677788999999999999987753100 1111
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.....+......+...|++++|+..+++.+...... ++.. ....++..+..
T Consensus 81 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~----------~~~~~~~~l~~ 131 (338)
T 3ro2_A 81 ---GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------------NDKV----------GEARALYNLGN 131 (338)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----------------cCch----------HHHHHHHHHHH
Confidence 112223333333445788888888888765432100 0000 00135667777
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 230 ~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.|...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888 88888888775432 1111 244678888888899999999998887654
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cH
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~ 363 (723)
. ..... .......++..+...+...|++++|...+++...........+ ..
T Consensus 212 ~--------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 212 I--------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp H--------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 2 11100 0011233667778888889999999999888876432211111 14
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.++..+...+...|++++|...+++...... .....++..+...|.+.|++++|...+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4667777788888888888888877754311 001335666777777777777777777776653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=127.19 Aligned_cols=295 Identities=14% Similarity=0.030 Sum_probs=188.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC-Ccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV-APLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~ 149 (723)
...+..++..+...|++++|+..+++++... |.... ....++..+...+...|++++|+..|+++++... ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 5566678889999999999999999999984 33221 1123445667778899999999999999876310 01111
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.....+......+...|++++|+..+++++...... ++. +....++..+..
T Consensus 124 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 124 ---GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGN 174 (411)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHH
Confidence 122233333334445899999999988876532000 000 011245666777
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 230 EFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 230 ~~~~~~~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
.|...|+ +++|+..+++..+. +..+ ...++..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7777787 78888777765432 1111 245788888889999999999999988876511
Q ss_pred c-ccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHH
Q 004922 288 T-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFT 365 (723)
Q Consensus 288 ~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~ 365 (723)
. .+. .....++..+...|...|++++|...|++........ .......+
T Consensus 255 ~~~~~-----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 255 EFGDR-----------------------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHTCH-----------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCc-----------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 000 0113455566677777777777777777766643221 11112457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+...|...|++++|...+++...... .....++..+...|.+.|++++|...+++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77777777777777777777777654311 111346677778888888888888888887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-11 Score=113.26 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=113.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+..++..++..|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------- 121 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----------- 121 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------
Confidence 3445667777888888888888888888887653 2367778888888888888888888888776542
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g 377 (723)
+.+...+..+...+...|++++|...++++... .+.+...+..+...+...|
T Consensus 122 -----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 122 -----------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp -----------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHcC
Confidence 223444555666666666666666666666552 1234556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++++|...++++...... +..++..+...|.+.|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 677777666666654322 4556666666677777777777777766654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=125.41 Aligned_cols=274 Identities=15% Similarity=0.034 Sum_probs=168.7
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCccc----ccHHHHHHHHhcCCChHHHHHHhhhC----------CCCcchHHH
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACIV----------PRADILFCN 226 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~ 226 (723)
....+...|++++|+..|+++++.. |.+. ..+..++..+...|++++|...++.. +....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3334455899999999999988864 4432 23444555555555555555544332 111133444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCcccH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGD----------YMKSRAIYEDLRSQNVTLNI 291 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~ 291 (723)
+...|...|++++|...|++..+.. -.+ ...++..+...|...|+ +++|...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 4455555555555555544433210 001 12234444444444444 1111111
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHH
Q 004922 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL----GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFT 365 (723)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~ 365 (723)
++.|.+.+.+.... +. .....++..+...|...|++++|...+++........ ........
T Consensus 199 -------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 199 -------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44444444443221 11 1224577788899999999999999999988753221 01111237
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EPNSQC 435 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 435 (723)
+..+...|...|++++|...+++....... ....++..+...|...|++++|...+++..+. +. .....+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888999999999999999999988754211 11467888999999999999999999988753 11 112346
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 436 ~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+..+...|.+.|++++|...+++....
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 778889999999999999999987654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-07 Score=102.03 Aligned_cols=443 Identities=11% Similarity=0.070 Sum_probs=286.0
Q ss_pred HHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC---HHHHHHHHH
Q 004922 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYD 245 (723)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~ 245 (723)
+.+..|++.+..+ |.+...|..++..+.+.+.++.+..+|+. +|.....|...+..-.+.++ ++.+..+|+
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444556666655 78889999999999988999988887766 58888888888888888888 999999999
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHhC-CC-ccc-HHHHHHHHhhhc-----------
Q 004922 246 ASKKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRSQ-NV-TLN-IYVFNSLMNVNA----------- 302 (723)
Q Consensus 246 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~m~~~-g~-~~~-~~~~~~ll~~~~----------- 302 (723)
+...... +|++..|..-+....+.++. +.+.++|+..... |. .++ ...|...+....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9987541 37888888887766555543 3445777776553 66 554 567877776421
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-------------cCChHHHHHHHHHHHhhhhcCC---cc------
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK------ 360 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~~~~~~~~g~---~~------ 360 (723)
++.+.+.++|++........-..+|......-.. ..+++.|...+.++..... +. ++
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccc
Confidence 2356678888888753111112233222111111 1233445555555443221 10 00
Q ss_pred -----c-----c---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 004922 361 -----L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-H 419 (723)
Q Consensus 361 -----~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~ 419 (723)
| + ...|...+.---..+ ..+.+..+|++.+..-+. +...|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 134555544332222 134466788888876433 7788888888888899999997 9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCC
Q 004922 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499 (723)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (723)
+|++.... ++.+...|-..+....+.|+++.|.++|+.+....... ......
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~--------------- 417 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME--------------- 417 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH---------------
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh---------------
Confidence 99999875 35577777788888899999999999999887532100 000000
Q ss_pred CCccccccccCCCc------------CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcC-C
Q 004922 500 SHYSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-G-LSPNHISWTILIDACGGS-G 562 (723)
Q Consensus 500 ~~~~~~~~~~~~~p------------~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~-~-~~p~~~~~~~li~~~~~~-g 562 (723)
-.| ....|...+.... ++.+.|..+|....+. + ..+...+..+.+. .+. +
T Consensus 418 -----------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~ 484 (679)
T 4e6h_A 418 -----------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISK 484 (679)
T ss_dssp -----------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTS
T ss_pred -----------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCC
Confidence 002 1223444444433 3678999999999875 2 2233333333333 344 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQC 640 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~a 640 (723)
+.+.|..+|+...+. +.-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~-- 561 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR-- 561 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH--
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH--
Confidence 599999999999875 33356677888888888999999999999998753222 4578888888889999977754
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 641 LAVYQDMWKAGYKANDTYLKELIEEW 666 (723)
Q Consensus 641 ~~~~~~m~~~g~~p~~~~~~~li~~~ 666 (723)
++.++|.+.-... .....+++-|
T Consensus 562 -~v~~R~~~~~P~~--~~~~~f~~ry 584 (679)
T 4e6h_A 562 -TLEKRFFEKFPEV--NKLEEFTNKY 584 (679)
T ss_dssp -HHHHHHHHHSTTC--CHHHHHHHHT
T ss_pred -HHHHHHHHhCCCC--cHHHHHHHHh
Confidence 4888888766443 3344455544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-11 Score=121.22 Aligned_cols=273 Identities=15% Similarity=0.045 Sum_probs=170.9
Q ss_pred HHHhhccchHHHHHHHHHHHHhcCCCCcc----cccHHHHHHHHhcCCChHHHHHHhhhC-------C---CCcchHHHH
Q 004922 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADILFCNF 227 (723)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~---~~~~~~~~l 227 (723)
...+...|++++|+..|+++++.. |.+ ...+..++..+...|++++|...++.+ . ....++..+
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334455899999999999988764 433 234445555555566666555554442 1 012344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhCCCcc
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD-------------YMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~g~~~ 289 (723)
...|...|++++|...+++..+.... ++ ..++..+...|...|+ ++++...
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----------- 162 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----------- 162 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----------
Confidence 55555555555555555544331100 01 2244444555555555 0111111
Q ss_pred cHHHHHHHHhhhcCChHHHHHHHHHHHH----cCCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc-ccH
Q 004922 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQK----LGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDV 363 (723)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~----~g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~-~~~ 363 (723)
++.|.+.+.+... .+.. ....++..+...+...|++++|...+++........... ...
T Consensus 163 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 163 ---------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3444444443322 1111 124567788899999999999999999988754332111 123
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN----S 433 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~ 433 (723)
.++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+... ..+ .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 47888899999999999999999998753211 11 45788899999999999999999998875311 112 5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.++..+...|.+.|++++|...+++....
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57788888999999999999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-11 Score=124.79 Aligned_cols=216 Identities=13% Similarity=-0.019 Sum_probs=156.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCCh-HHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV-NLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
...+++++..++...... +.....+..++..+...|++ ++|++.++.+ |.+..++..+...|...|++++|..
T Consensus 81 ~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356677888888766544 56666777777777777777 7777766553 5556677777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGIC---------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (723)
.|++..+. .|+...+..+...|... |++++|+..|++..+.
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------------- 208 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---------------------------- 208 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----------------------------
Confidence 77777664 35556666777777666 6666666666555432
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHc--------CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~--------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
. +.+...|..+..+|... |++++|...|++...+... ...+...|..+..+|...|++++|...
T Consensus 209 -----~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 209 -----D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--ASSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp -----C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG--GGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 34567777888888888 8999999999999873100 003677899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
|++..+..+. +...+..+...+...|++++|+..+.++
T Consensus 281 ~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 281 FSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999887544 6677888888888889888888765443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=117.99 Aligned_cols=93 Identities=8% Similarity=-0.017 Sum_probs=53.1
Q ss_pred hhccchHHHHHHHHHHHHhcCCC-CcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
+...|++++|+..|++.++.... ++.. ....++..+...|...|++++|...
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRI---------------------------EKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHH---------------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34479999999999988764211 1100 0113455566666666666666666
Q ss_pred HHHHHhcCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 244 YDASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 244 ~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+.+..+... .+ ...+++.+...|...|++++|...|++..+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 665543210 01 134566666667777777777777666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-10 Score=115.28 Aligned_cols=302 Identities=10% Similarity=0.075 Sum_probs=188.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CC--CCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCcccHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHL--SS--PNMYICRTIIDV--CGICGDYMKSR-----------AIYEDLRSQNVTLNIYV 293 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~m~~~g~~~~~~~ 293 (723)
+.+.+++++|..+++++.+.. .. ++...|..++.. ....++++.+. +.++.+.......+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788888888888876532 21 233334444432 11223333333 55555443211111100
Q ss_pred ------HHHHHhhhcCChHHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc--c
Q 004922 294 ------FNSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (723)
Q Consensus 294 ------~~~ll~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~--~ 360 (723)
+.+......|+++.|...|++.... +-.+ ...++..+...|...|++++|...+.+.......... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1222223447888888888887653 1111 3456777888888999999999999888775433211 1
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~ 430 (723)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12346788888888999999999988887653111 11 246788888889999999999988887762 22 3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccC
Q 004922 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (723)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (723)
....++..+...|.+.|++++|...+++.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------------------- 294 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------------------------- 294 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 345677888888888899999888887654321
Q ss_pred CCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 004922 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (723)
Q Consensus 511 ~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~ 586 (723)
... +-+.....+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 295 --------------------------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 295 --------------------------QKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp --------------------------HHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred --------------------------HHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 110 111112235567777778888 66666666655 22333 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..+...|...|++++|.+.|++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777888889999999999888763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=117.13 Aligned_cols=270 Identities=14% Similarity=0.037 Sum_probs=166.4
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcc----cccHHHHHHHHhcCCChHHHHHHhhhC-------CC---CcchHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------PR---ADILFCNFVRE 230 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~---~~~~~~~l~~~ 230 (723)
+...|++++|+..|+++++.. |.+ ...+..++..+...|++++|...++.. +. ...++..+...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344899999999999988764 433 233444555555555555555554432 00 11334444555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhCCCcccHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD-------------YMKSRAIYEDLRSQNVTLNIY 292 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~g~~~~~~ 292 (723)
|...|++++|...+++..+.... ++ ..++..+...|...|+ .+++...
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------------- 158 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------------- 158 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------------
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------------
Confidence 55555555555555443321100 11 2234444444444444 1111111
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQKL----GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTY 366 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~~ 366 (723)
++.|.+.+++.... +. ......+..+...+...|++++|...+++........ ........+
T Consensus 159 ------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 159 ------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 44444444433221 11 1124467778889999999999999999987643221 111123478
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 004922 367 STIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EPNSQCC 436 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 436 (723)
..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+. +. .....++
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88899999999999999999988753111 11 457788899999999999999999988653 11 1124467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
..+...|.+.|++++|...+++....
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999987654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-10 Score=99.74 Aligned_cols=168 Identities=16% Similarity=0.119 Sum_probs=112.8
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
++..+|..+...|...|++++|+..|++..+..+ -+..++..+..+|.+.|++++|...+.......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------ 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3456788888899999999999999998887532 367788888888888999988888888776542
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
+.+...+..+...+...++++.|...+.+.... .+.+...+..+...|.+.|+
T Consensus 70 ----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 70 ----------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 223344444555566666666666666666552 22344556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+++|++.|++..+..+. +..+|..+..+|.+.|++++|+..|++..+.
T Consensus 123 ~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666666655432 5556666666666666666666666666553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-09 Score=107.09 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH-------HHHHHHH
Q 004922 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-------VSALRAY 244 (723)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~ 244 (723)
++|+.+|++++... |.++..|...+..+...++ .+.+.|++ ++|..+|
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~-----------------------~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSK-----------------------LLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHH-----------------------HHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhch-----------------------hhhhccchhhcccchHHHHHHH
Confidence 67888888887754 5555555555544432100 01234554 7777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH-HHHHHHhhh--cCChHHHHHHHHHHHHcCC
Q 004922 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY-VFNSLMNVN--AHDLKFTLEVYKNMQKLGV 320 (723)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~--~~~~~~a~~~~~~m~~~g~ 320 (723)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .. .|..+.... .|+++.|..+|++..+..
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 77776212235567777777777777777777777777764 221 11 233332221 133444444444443322
Q ss_pred CcChhhHHHHHHHHH-HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--
Q 004922 321 MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTP-- 396 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-- 396 (723)
+.+...|........ ..|++++|..+|+..... .+.+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 112222222211111 135555555555555442 12234445555555555555555555555555532 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
....|..++..+.+.|+.+.|..+++++.+
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234455555555555555555555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.9e-09 Score=101.36 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004922 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-------DAKWW-------QMALKVKEDMLS-AGVTPNTITWSSLI 405 (723)
Q Consensus 341 ~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~-~~~~p~~~~~~~li 405 (723)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++.+. ..+. +...|..++
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 5677777777663 2345556766666654 34664 788888888876 3322 556788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPN-SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
..+.+.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|++.....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 164 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------------------- 164 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--------------------
T ss_pred HHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------
Confidence 8888888888888888888774 342 33 67777777777888888888887765421
Q ss_pred hhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
+++...|....... .++.++|..+|+...+.. +-+...|..++..+.+
T Consensus 165 ----------------------------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 165 ----------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSH 215 (308)
T ss_dssp ----------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 11111221111111 134455555555554431 1234455555555555
Q ss_pred CCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 561 SGNVEGALQILKIMREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666666666555532 233 244555555555555666666655555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-10 Score=111.97 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=148.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NV 287 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~ 287 (723)
..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 367888899999999999999999998763 22234667889999999999999999999988764 11
Q ss_pred cc-cHHHHHHHHhh--hcCChHHHHHHHHHHHHcC-----C--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 288 TL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 288 ~~-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g-----~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.| ....+..+... ..|+++.|.+.|++..+.. . +.....+..+...+...|++++|.+.|+++.......
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12 23334444333 2367777777777776542 1 1123456666777777788888888887777642211
Q ss_pred --Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 004922 358 --VLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHL 420 (723)
Q Consensus 358 --~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~li~~~~~~g~~~~a~~~ 420 (723)
...| ...++..+...|...|++++|...++++... ...+... .+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 0112 2345677777777778888888777777642 1111111 111222222333344444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+....... +.+..++..+..+|.+.|++++|...|++....
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 54444321 335567888999999999999999999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-10 Score=111.03 Aligned_cols=238 Identities=10% Similarity=-0.001 Sum_probs=145.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhc------CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
....+..++..+...|++++|+..+++++... ..|. ....+..+...+...|++++|+..++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD------VATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999998852 1233 23444566667899999999999999998741
Q ss_pred C---CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhc------CCCCcccccHHHHHHHHhcCCChHHHHHHh
Q 004922 144 V---APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (723)
Q Consensus 144 ~---~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (723)
. .++.. .....+......+...|++++|+..++++++. +..+.....+..++..+...|++++|.+++
T Consensus 100 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 100 EKTLGKDHP---AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhCCCCh---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 01111 12233334444455689999999999998865 334556667778888888889998888887
Q ss_pred hhC---------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCC-------HHHHHHHHHHHHh
Q 004922 215 CIV---------PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHL-------SSPN-------MYICRTIIDVCGI 268 (723)
Q Consensus 215 ~~~---------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~ 268 (723)
+.. +.+ ..++..+...|...|++++|...|+++.+.. ..+. ...+..+...+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 663 111 2457778888888899999988888876521 1111 1112222222233
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQK 317 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~ 317 (723)
.+.+.++...+....... +.+..++..+..++ .|++++|.+.|++..+
T Consensus 257 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444444443321 12233444444433 3677777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-10 Score=116.85 Aligned_cols=202 Identities=9% Similarity=-0.085 Sum_probs=158.6
Q ss_pred CCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
+.+..++..+...|...|++ ++|+..|++..+... .+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 166 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----------- 166 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------
Confidence 44556677777777778888 888888877776432 24667777777777777777777777776654
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc---------CChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
.|+...+..+...+... |++++|...|++...+ .+.+...|.
T Consensus 167 ------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 217 (474)
T 4abn_A 167 ------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWY 217 (474)
T ss_dssp ------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 34455666666667676 9999999999999874 234577899
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 368 TIVKVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 368 ~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+.
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 999999998 9999999999999986431 378899999999999999999999999998874 44677888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.+..++...|++++|.+.+.++..
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccC
Confidence 899999999999999887765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-09 Score=94.62 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+..+|..+...|.+.|++++|++.|++..+.. +-+...+..+..+|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----------------------------------PNNVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 56788899999999999999999998877541 34677888899999
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 414 (723)
.+.|++++|...+...... .+.+...+..+...+...++++.+...+.+.....+. +...+..+...|.+.|++
T Consensus 50 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL-----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCc
Confidence 9999999999999998873 2345667888888899999999999999999887544 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+..
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999874 5578889999999999999999999999887644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-09 Score=108.28 Aligned_cols=292 Identities=13% Similarity=0.014 Sum_probs=171.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..........+...|++++|...+++++......+.. .....+..+...+...|++++|...+++..+. .|....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 88 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHhcCc
Confidence 3455566677788999999999999998874322111 11233455666688899999999999998863 221110
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.......+......+...|++++|+..+++.+.......... .|....++..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 001112222333334458999999999988765321000000 00011344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHH-----HH--
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS--P--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM-- 298 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~-----ll-- 298 (723)
+...|++++|...+++....... + ...++..+...+...|++++|...+++.......++ ...+.. ..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77777777777777776543221 1 234566677777777788777777777654311111 011111 11
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHH
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~ 374 (723)
....|+++.|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 123467777777777665432111 12245567778888899999999888876543222112222 25556666777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004922 375 DAKWWQMALKVKEDMLS 391 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (723)
..|+.++|...+++...
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 78888888887777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=110.49 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=122.0
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|+++........+. +....++..+...|...|+++.|...+.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDD--------------------------IEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCCh--------------------------HHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34788899999888877542111110 0012456667777777777777777776
Q ss_pred HHHhcCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcC
Q 004922 246 ASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 246 ~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g 319 (723)
+..+... .+ ...+++.+...|...|++++|.+.|++..+. .... +
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------------------~~~~---~ 216 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL--------------------------AMDI---Q 216 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HHHT---T
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------------------------HHHc---C
Confidence 6554210 11 2446777777777888888888877776542 0000 0
Q ss_pred CC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC----
Q 004922 320 VM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---- 394 (723)
Q Consensus 320 ~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---- 394 (723)
.. ....+++.+..+|...|++++|.+.|++..........+....++..+...+.+.|++++|...+++......
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 00 1223444455555555555555555555544322211222344555555555555555555555555544211
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 395 TPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
......+..+...+...++ +.+|+..+++ .+..+ ....+..+...|.+.|++++|...|++...
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112233444444444555 4444444443 11111 122344555566666666666666665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=123.88 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=118.5
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 145 (723)
.|+. ..++..|...+.+.|++++|+..|+++++. +|+... ++.++...+.+.|++++|++.|+++++ +.
T Consensus 5 ~P~~-a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~------a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~ 73 (723)
T 4gyw_A 5 CPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIR--IS 73 (723)
T ss_dssp -CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 4555 788899999999999999999999999988 666433 334555558889999999999998887 45
Q ss_pred cccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
|+.. ..+..+.. .+.+.|++++|++.|+++++.. |+ +..+++
T Consensus 74 P~~~---~a~~nLg~---~l~~~g~~~~A~~~~~kAl~l~--P~------------------------------~~~a~~ 115 (723)
T 4gyw_A 74 PTFA---DAYSNMGN---TLKEMQDVQGALQCYTRAIQIN--PA------------------------------FADAHS 115 (723)
T ss_dssp TTCH---HHHHHHHH---HHHHTTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHH
T ss_pred CCCH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CC------------------------------CHHHHH
Confidence 6432 23333333 3444788888888888887754 43 345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.+...|.+.|++++|+..|++..+... -+...+..+..+|...|++++|.+.++++.+
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666677777777777777777666321 2466677777777777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-09 Score=106.23 Aligned_cols=238 Identities=11% Similarity=0.073 Sum_probs=138.4
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHH--HhcCCHHHHH---------HHHHHHHhC
Q 004922 223 LFCNFVREF--GKKRDLVSALRAYDASKKHL--SSP--NMYICRTIIDVC--GICGDYMKSR---------AIYEDLRSQ 285 (723)
Q Consensus 223 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~--~~~g~~~~a~---------~~~~~m~~~ 285 (723)
+-..|-..| .+.+++++|..+++++.+.. ... +...|..++..- .-.+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334445555 77889999999988875532 222 333444444321 1111211122 445544332
Q ss_pred CCccc-H-----HHHHHHHhhhcCChHHHHHHHHHHHHcCC-Cc----ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 286 NVTLN-I-----YVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MA----DMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 286 g~~~~-~-----~~~~~ll~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
....+ . ..+........|+++.|...|++...... .+ ...++..+...|...|+++.|...+++.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11111 1 11122222344778888888877765311 11 24466677778888888888888888777643
Q ss_pred hcCCc-c-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 004922 355 AKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ- 426 (723)
Q Consensus 355 ~~g~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 426 (723)
..... . ....+++.+...|...|++++|...|++..+. +..+ ...++..+..+|...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32211 1 12446777777888888888888888777642 1111 134567777778888888888888877765
Q ss_pred ----cCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 427 ----AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 427 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.. +....++..+...|.+.|++++|...+++...
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 22355677777777788888888777776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-08 Score=98.54 Aligned_cols=208 Identities=11% Similarity=-0.032 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 299 (723)
.......+...|++++|...+++........+. .+++.+...+...|++++|...+++.....
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 83 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA------------- 83 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-------------
Confidence 334455666788888888888887764322222 245666677778888888888887765421
Q ss_pred hhcCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc--c-cHHHHHHHHHHHHc
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--L-DVFTYSTIVKVFAD 375 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~--~-~~~~~~~ll~~~~~ 375 (723)
. ..|.. ....++..+...+...|++++|...+++........... | ....+..+...+..
T Consensus 84 -------------~---~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 84 -------------R---QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp -------------H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred -------------H---hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 0 00000 011223445555666666666666666655443221111 3 33455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCN----ILLQACVE 445 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~ 445 (723)
.|++++|...+++....... ....++..+...+...|++++|...+++.....-.+ ...... ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 66666666666665543211 122445566666666777777777776665421111 111111 12233556
Q ss_pred hCCHHHHHHHHHHhh
Q 004922 446 ACQFDRAFRLFRSWT 460 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~ 460 (723)
.|++++|...++...
T Consensus 228 ~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 228 TGDKAAAANWLRHTA 242 (373)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCC
Confidence 777777777776544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-09 Score=115.38 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=91.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+..+++.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------- 73 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------- 73 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 33445666666777777777777777776665321 245666677777777777777777666655431
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g 377 (723)
+-+...|..+..+|...|++++|.+.|++..++ -+-+...|+.+...|.+.|
T Consensus 74 -----------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 74 -----------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSG 125 (723)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC
Confidence 123344455555555555555555555555442 1123344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
++++|++.|++.++.... +...|..+..++...|++++|.+.++++.
T Consensus 126 ~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 126 NIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 555555555555544322 34455555555555555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-08 Score=90.99 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
+..++..+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 4444555555555555555555554421 1234455555555555555555555555444321
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|.
T Consensus 73 -----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 73 -----------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 123334444444555555555555555554432 1223334444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
..++++...... +...+..+...+...|++++|...+++..
T Consensus 131 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 131 DSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555444443211 33444444444444444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-08 Score=89.07 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 53 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----------------------------------AFDVDVALHLGIAYV 53 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----------------------------------SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------ccChHHHHHHHHHHH
Confidence 3456666677777777777777777655431 345677888889999
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|...++++... .+.+...+..+...+...|++++|.+.++++..... .+...+..+...+...|+++
T Consensus 54 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHH
Confidence 999999999999999873 234677889999999999999999999999987753 37788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
+|...++++.+.. +.+...+..+...+...|++++|...++......
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999998874 5578889999999999999999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=99.74 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCccc-HHHHHHHHhh--hcCChHHHH
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNV--NAHDLKFTL 309 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~~~-~~~~~~ll~~--~~~~~~~a~ 309 (723)
+|++++........+....++..+...|...|++++|+..|+++.+. +-.|. ..++..+-.+ ..|+++.|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443222234678899999999999999999999988754 21222 3344444433 336788888
Q ss_pred HHHHHHHHcC-----C--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccc-cHHHHHHHHHHHHccCCH
Q 004922 310 EVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKL-DVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 310 ~~~~~m~~~g-----~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~-~~~~~~~ll~~~~~~g~~ 379 (723)
+.|.+..... . +....++..+...|...|++++|...|+++...... +...| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 8888776542 1 122456667777788888888888888888774211 10122 345677777788888888
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGLV------EQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 380 ~~a~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
++|..++++.... ...+. ...|..+...+...+.. ..+...+..... ..+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 8888888877653 11122 22333333333322222 222222211110 112234567888899999
Q ss_pred hCCHHHHHHHHHHhhh
Q 004922 446 ACQFDRAFRLFRSWTL 461 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~ 461 (723)
.|++++|...+++...
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-07 Score=88.68 Aligned_cols=191 Identities=10% Similarity=0.025 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
+..+..+...+...|++++|+..|+...+....++...+..+..++...|++++|+..|++..+.... +...|..+-.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 45667777777888888888888888777554356666666777788888888888888877765311 22233333222
Q ss_pred --hcCChHHHHHHHHHHHHcCCCcCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHH
Q 004922 301 --NAHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYST 368 (723)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ 368 (723)
..|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ ..|+ ...|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHHH
Confidence 3356666666666666543 2234 3466666777777888888888877765 3444 345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+|...| ..+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666665433 3334444443322 333443333 23345577788888777765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=97.74 Aligned_cols=153 Identities=13% Similarity=0.096 Sum_probs=116.5
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc---CCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~---g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
+++..+.....+....++..+...|...|++++|...++++...... +..+....++..+...|...|++++|...+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 29 EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444443333345677888999999999999999999998874311 111334567899999999999999999999
Q ss_pred HHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 004922 387 EDMLSA------G-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GCEP-NSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 387 ~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a 452 (723)
++.... . .+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998764 1 1223567888999999999999999999988765 1122 355788888999999999999
Q ss_pred HHHHHHhhhh
Q 004922 453 FRLFRSWTLS 462 (723)
Q Consensus 453 ~~l~~~~~~~ 462 (723)
...+++....
T Consensus 189 ~~~~~~~l~~ 198 (283)
T 3edt_B 189 ETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-07 Score=86.59 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566777777778888888888888888776544566777778888888888888888888887753 33556677777
Q ss_pred HHHHHhCCHHHHHHHHHHhhh
Q 004922 441 QACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 441 ~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.+|...|++++|...+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=97.40 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=127.8
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
....|...+..+...|++++|+..|++++.... +|. .....+.++...+...|++++|+..|+++++. .|
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED-----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 567888889999999999999999999988732 222 12445567778899999999999999999873 22
Q ss_pred ccccccchhhhhHHHHHHhhcc-chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
...........+.+....+... |++++|+..|++.++.. |.. ++... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD--------------QSVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC--------------CChHH----------HHHHHH
Confidence 2110111122233333334444 78888888887766532 110 00000 013466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cc---HHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFN 295 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~~~~ 295 (723)
.++..|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+.... ++ ...+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 6777777777777777777777664322111 14566666777777777777777776653211 11 11223
Q ss_pred HHHhhhc----CChHHHHHHHHHHH
Q 004922 296 SLMNVNA----HDLKFTLEVYKNMQ 316 (723)
Q Consensus 296 ~ll~~~~----~~~~~a~~~~~~m~ 316 (723)
.+...+. ++++.|++.|+.+.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 3333332 34666666665554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-08 Score=95.12 Aligned_cols=194 Identities=7% Similarity=-0.037 Sum_probs=132.8
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 145 (723)
+|.. ...+..++..+.+.|++++|+..|++++... |.... ...++..+...+...|++++|+..|+++++. .
T Consensus 11 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~ 82 (261)
T 3qky_A 11 RHSS-PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEW---AADAQFYLARAYYQNKEYLLAASEYERFIQI--Y 82 (261)
T ss_dssp CCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcc---hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--C
Confidence 4455 6777788999999999999999999999984 43210 1233445566689999999999999999984 4
Q ss_pred cccccccchhhhhHHHHHHhhc--------cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 146 PLELFDGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
|+... ....+......+.. .|++++|+..|++++... |++......+.......+..
T Consensus 83 p~~~~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------- 147 (261)
T 3qky_A 83 QIDPR---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------- 147 (261)
T ss_dssp TTCTT---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH----------
T ss_pred CCCch---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH----------
Confidence 53321 22233333344445 799999999999998865 55544443222111110000
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 285 (723)
...+..+...|.+.|++++|+..|+.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 148 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ---ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 1235667888888899999999998887753321 245677777777765 8888999999888876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=87.73 Aligned_cols=194 Identities=7% Similarity=-0.054 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..|++++... |.... ...++..+...+...|++++|+..|+++++. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 4556677888999999999999999999984 33211 1233345666689999999999999999984 554331
Q ss_pred ccchhhhhHHHHHH---------------hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 151 DGSGFKLLKNECQR---------------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 151 ~~~~~~~l~~~~~~---------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
....+-.+..++.. ..+.|++++|+..|+++++.. |++...+........-.+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------
Confidence 11111111111111 113688999999999988755 66554443222211100000
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
......+...|.+.|++++|+..|+.+.+..+... ..++..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11234567888999999999999999987532211 2568888999999999999999999888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-08 Score=87.91 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..+++++.. +|+.... +..+...+...|++++|+..|+++.+. .| ..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a------~~~la~~~~~~g~~~~A~~~~~~a~~~--~p-~~- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDV------KLAKADCLLETKQFELAQELLATIPLE--YQ-DN- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHH------HHHHHHHHHHTTCHHHHHHHHTTCCGG--GC-CH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHH------HHHHHHHHHHCCCHHHHHHHHHHhhhc--cC-Ch-
Confidence 445667788899999999999999999888 6664433 334445588999999999999998763 34 21
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.....+... .+...+...+|+..+++.++.. |.+..++..+...
T Consensus 74 --~~~~~~~~~--~~~~~~~~~~a~~~~~~al~~~--------------------------------P~~~~~~~~la~~ 117 (176)
T 2r5s_A 74 --SYKSLIAKL--ELHQQAAESPELKRLEQELAAN--------------------------------PDNFELACELAVQ 117 (176)
T ss_dssp --HHHHHHHHH--HHHHHHTSCHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHH
T ss_pred --HHHHHHHHH--HHHhhcccchHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHH
Confidence 111111111 1111122234566666665543 4555677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...|++...
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888999998888888754432 356788888888888998888888887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-07 Score=76.09 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+...|++++|..+|+.+... .+.+...+..+...+...|++++|..+++++...+.. +...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHH
Confidence 4566777888888888888888888763 2345667777888888888888888888888776433 566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888887764 446677788888888888888888888876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=90.57 Aligned_cols=204 Identities=10% Similarity=-0.014 Sum_probs=144.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.+..|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------- 106 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------- 106 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 366778889999999888877653 21122 567899999999999999999999876642
Q ss_pred cCChHHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHc-CChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCC
Q 004922 302 AHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKW 378 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~ 378 (723)
+.. .|-.. -..+++.+...|... |++++|...|++...+........ ...++..+...+.+.|+
T Consensus 107 ----------~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 107 ----------FTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp ----------HHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 111 11010 134677788899996 999999999999987532211111 13568889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--
Q 004922 379 WQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQACV-- 444 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-- 444 (723)
+++|+..|++.......... ..|..+..++...|++++|...|++..+. .|+. ..+..++.+|.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999999986543322 15777888999999999999999998753 2321 23444566664
Q ss_pred HhCCHHHHHHHHHHhhh
Q 004922 445 EACQFDRAFRLFRSWTL 461 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~ 461 (723)
..+++++|+..|+.+..
T Consensus 252 ~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp CTTTHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHhccCCc
Confidence 34678888888876544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-07 Score=86.00 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (723)
...+...+..+...|++++|+..|++++.. +|+...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 39 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTE 39 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChH
Confidence 344556677888999999999999999998 776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-08 Score=109.42 Aligned_cols=168 Identities=11% Similarity=-0.058 Sum_probs=109.1
Q ss_pred hhcCChHHHHHHHHHHH--------HhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccc
Q 004922 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 153 (723)
...|++++|+..+++++ .. +|.....+ ......+...|++++|+..|+++++. .|+.. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~------~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~---~ 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELP------LMEVRALLDLGDVAKATRKLDDLAER--VGWRW---R 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHH------HHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCH---H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHH------HHHHHHHHhcCCHHHHHHHHHHHhcc--CcchH---H
Confidence 77899999999999998 44 55543332 34445588999999999999999973 55432 2
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.+..+.. .+...|++++|+..|+++++.. |++...+..++.++.+.|++++ ++.|+.+ |.+..++..+..
T Consensus 469 a~~~lg~---~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 469 LVWYRAV---AELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 3333333 3344799999999999988866 6666666666666666666666 5555442 555566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG 270 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 270 (723)
.|.+.|++++|+..|++..+. .| +...+..+..++...+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 666666666666666665542 23 2445555555554433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=86.87 Aligned_cols=110 Identities=10% Similarity=0.122 Sum_probs=73.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
+.....+.+.|++++|+..|+++++.. |++...+.... ....... .....+.+...|.+.|+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----~~~~~~~----------~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN----VDKNSEI----------SSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH----SCTTSHH----------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh----hcchhhh----------hHHHHHHHHHHHHHCCCHH
Confidence 333344556899999999999998865 65554443311 0000000 1123344777888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+|+..|++..+..+ .+...+..+..+|...|++++|+..|++..+.
T Consensus 72 ~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 72 KAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888877432 36778888888888888888888888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-07 Score=75.47 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 302 (723)
++..++..+...|++++|..+|+++.+... .+...+..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 345566666666667777666666655422 245556666666666666666666666554331
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a 382 (723)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHH
Confidence 123334445555556666666666666655542 122344555555556666666666
Q ss_pred HHHHHHHHH
Q 004922 383 LKVKEDMLS 391 (723)
Q Consensus 383 ~~~~~~m~~ 391 (723)
...++++..
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666655554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-06 Score=81.48 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
.++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .||..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~-------- 170 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTV-------- 170 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccccc--------
Confidence 33344555555555555555555555443321 23444555555555555555555555555443 12000
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH--H--cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHcc
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--L--AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~--~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~ 376 (723)
..+..+...|..++. . .+++.+|..+|+++.. ..|+..+-..++.++.+.
T Consensus 171 --------------------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~------~~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 171 --------------------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ------TFPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT------TSCSHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------hCCCcccHHHHHHHHHHc
Confidence 001233333333311 1 2256666666666544 233322233333356666
Q ss_pred CCHHHHHHHHHHHHHCC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 377 KWWQMALKVKEDMLSAG-----V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~-----~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
|++++|.+.++.+.+.. - +-|..+...+|......|+ +|.++++++.+.
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66666666666544320 0 1134444444444444554 556666666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.3e-08 Score=93.80 Aligned_cols=169 Identities=9% Similarity=-0.066 Sum_probs=113.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|+. ...+..++..+.+.|++++|+..|++++.. +|+.... +..+...+...|++++|+..|+++.+. .|
T Consensus 114 p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a------~~~la~~~~~~g~~~~A~~~l~~~~~~--~p 182 (287)
T 3qou_A 114 PRE-EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEI------GLLLAETLIALNRSEDAEAVLXTIPLQ--DQ 182 (287)
T ss_dssp CCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHH------HHHHHHHHHHTTCHHHHHHHHTTSCGG--GC
T ss_pred CCc-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhH------HHHHHHHHHHCCCHHHHHHHHHhCchh--hc
Confidence 444 566677777888888888888888888887 5554333 233444477888888888888877763 44
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
+.. ...+.....+...++.++|+..+++.+... |++..++..
T Consensus 183 ~~~------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------------P~~~~~~~~ 224 (287)
T 3qou_A 183 DTR------YQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------------PEDAALATQ 224 (287)
T ss_dssp SHH------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------------TTCHHHHHH
T ss_pred chH------HHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------------CccHHHHHH
Confidence 221 112222223334566667777777766544 455567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+...|...|++++|+..|.++.+..... +...+..++..|...|+.++|...|++...
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7788888888888888888887754321 256788888888888888888888776553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-06 Score=79.44 Aligned_cols=207 Identities=12% Similarity=0.008 Sum_probs=137.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (723)
.-.|++..++.-...+. .......-.-+.++|...|++... ..-.|....+..+.....++ ++..
T Consensus 24 fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---CCHH
T ss_pred HHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---HHHH
Confidence 34577777776332221 112223333344666666666531 11223433444444333332 6677
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 312 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
|+++...+ .++..++..+..++...|++++|++++.+... .+.-.-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777655 45666667888999999999999999998754 221113667888899999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 392 AGVTP-----NTITWSSLINACA--N--AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 392 ~~~~p-----~~~~~~~li~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
. .| +..+...+..++. . .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 45 3555666665532 2 34899999999999765 45544444555589999999999999987654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-07 Score=86.16 Aligned_cols=207 Identities=9% Similarity=-0.093 Sum_probs=142.5
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccch-hh----
Q 004922 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG-FK---- 156 (723)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~-~~---- 156 (723)
..++..+|...|.++... +|+.-..++....+ ..-...+.+.++..+++..+.+.++ +.|........ ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 579999999999999999 66654444433100 0002234566667777777777665 56654432222 11
Q ss_pred ----------hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC------
Q 004922 157 ----------LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA------ 220 (723)
Q Consensus 157 ----------~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 220 (723)
+.+..+..+.+.|++++|.++|+.+...+ |... ....++..+.+.+++++|+..+......
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 11222334555899999999999887655 6555 6777888899999999999998875321
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
..++..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++.... |+...+..|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 2467788999999999999999999987533214 34467777778889999999999999998873 4444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-06 Score=84.38 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=43.5
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-HHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYI 258 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~ 258 (723)
+.+...+...+..+.+.|++++|+..|+.+ |.+ ..++..+...|.+.|++++|+..|+...+..+. |. ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 334444444555555555555555544442 223 234444455555555555555555554443211 11 233
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHh
Q 004922 259 CRTIIDVCGI--------CGDYMKSRAIYEDLRS 284 (723)
Q Consensus 259 ~~~l~~~~~~--------~g~~~~a~~~~~~m~~ 284 (723)
+..+..++.. .|++++|+..|+++.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 4444444444 4444444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-06 Score=80.45 Aligned_cols=113 Identities=7% Similarity=-0.090 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC--ChHHHHHHhhhC----CCCcchHHHHHHHH----Hhc---CC
Q 004922 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCNFVREF----GKK---RD 236 (723)
Q Consensus 170 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~----~~~~~~~~~l~~~~----~~~---~~ 236 (723)
..++|+++++.++... |+....|+.-...+...+ ++++++++++.+ |.+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3368899998888866 778788887777777777 777777766553 66667776644444 444 66
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~ 285 (723)
+++++.+++.+.+... .|..+|+....++.+.|+++ ++++.++.+.+.
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 7777777777776432 36666776666666667666 677777776655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=7.4e-05 Score=78.23 Aligned_cols=120 Identities=9% Similarity=0.047 Sum_probs=73.8
Q ss_pred HHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 517 TYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWT--ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 517 ~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
.|...+.... ++.+.|..+|... .. ...+..+|. +.+.... .++.+.|..+|+...+.- .-+...|...++-
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3444444432 3567778888777 21 112333443 2222222 236888899988887642 1134556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~ 648 (723)
....|+.+.|..+|+++. -....|...+.-=...|+.+.++. +++++.
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~---v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE---LVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH---HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 777888888998888872 257778888877777888776655 444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=101.76 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=94.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH--HHHhhh
Q 004922 232 GKKRDLVSALRAYDASK--------KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN--SLMNVN 301 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~ 301 (723)
...|++++|++.|++.. +. .+.+...+..+...|...|++++|++.|+++.+... -+...|. ..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 45566666666666665 21 112445566666666666666666666666655421 0111111 112222
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
.|++++|.+.|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+. .+.+...|..+..++.+.|++++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST-----NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----CCchHHHHHHHHHHHHHcCCHHH
Confidence 244444444444444432 3345666677777777777777 7777777663 22345567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
|.+.|++..+.+.. +...+..+..++...++
T Consensus 553 A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 77777776654322 34556666666555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-07 Score=82.23 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=46.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|+...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 456667777788888888888888766532 135677888888888888888888888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.6e-08 Score=84.58 Aligned_cols=101 Identities=8% Similarity=0.011 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|++.|+++++.. |++...+..++..+...|++++|+..|+.+ |.+..++..+...|.+.|++++|.+.
T Consensus 44 ~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 344444444444444433 444444444444444444444444444332 55567777777788888887766554
Q ss_pred -HHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 004922 244 -YDASKKHLSSPNMYICRTIIDVCGICGD 271 (723)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (723)
+++..+.. +-+..+|......+...|+
T Consensus 122 ~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 122 WVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 46666532 1256677777777666664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-07 Score=87.14 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=78.4
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHH
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (723)
.|++++|..+++++..... ..+ +...+++++|...|.++.. .
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~~---------------~~~~~~~~~A~~~~~~a~~---------------~------ 45 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TSF---------------MKWKPDYDSAASEYAKAAV---------------A------ 45 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCS---------------SSCSCCHHHHHHHHHHHHH---------------H------
T ss_pred cchHHHHHHHHHHHHHHcc--ccc---------------cCCCCCHHHHHHHHHHHHH---------------H------
Confidence 5788888888888776521 100 1113556666666554421 0
Q ss_pred HhhccchHHHHHHHHHHHHhcC----CCCcccccHHHHHHHHhcCCChHHHHHHhhhC----C---C---CcchHHHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFR----LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----P---R---ADILFCNFVR 229 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~---~---~~~~~~~l~~ 229 (723)
+...|++++|+..|.+..... ........+..++..+...|++++|+..+++. + . ...++..+..
T Consensus 46 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 46 -FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111456666666555544321 11122334455555555556665555554432 0 0 0133445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSP-----NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
.|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|+..|++..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555 66666665555544321000 02345555555555555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=81.15 Aligned_cols=127 Identities=12% Similarity=0.058 Sum_probs=104.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|++++|+..++...... |+....+..++..|.+.|++++|++.++.+ |.+..++..+...|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3689999999999877644 778888899999999999999999998874 8888999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCcccHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~l 297 (723)
.|+...+..+ -+..+|..+...|.+.|++++|... +++..+.. +-+...|...
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~ 140 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 9999988532 3688999999999999999876665 57777653 1234445443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-06 Score=77.56 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=95.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cc---HHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFNS 296 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~~~~~ 296 (723)
.+..++..+.+.|++++|+..|+.+.+..+. | ....+..+..+|.+.|++++|+..|+++.+.... +. ...+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3445555566666666666666666653221 1 1245556666666666666666666666654221 11 111111
Q ss_pred HHhh------------------hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 297 LMNV------------------NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 297 ll~~------------------~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.+.. ..+++++|...|+++.+.. |+ ...+...... ..+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH-------
Confidence 1111 0235566666666666542 22 2222111100 0000000
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
......+...|.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123455667777888888888888776532211 2456777778888888888888888777653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=88.30 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=115.4
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
.......|...+..+...|++++|...+.+++....... ........+.++...|...|++++|+..|++.++.....
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 333577888888999999999999999999888732111 111224455677777899999999999999987641111
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
.. .......+.+....+.. |++++|+..|++.+... +. .++... ...++..
T Consensus 110 g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~--------------~~~~~~----------~~~~~~~ 160 (307)
T 2ifu_A 110 GT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--EN--------------EERLRQ----------AAELIGK 160 (307)
T ss_dssp TC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HH--------------TTCHHH----------HHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--Hh--------------CCChhH----------HHHHHHH
Confidence 00 01122334444444555 88888888888776532 10 011100 0145666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+...|.+.|++++|+..|++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777777777777765421 1111 2255566666666777777777777766
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=85.37 Aligned_cols=162 Identities=12% Similarity=0.001 Sum_probs=100.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+...+..+...+.+.|++++|...|++..+..+ .+...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 44456677788888888999999999998887432 367788888889999999999999998876652 333222111
Q ss_pred Hhh---hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHH
Q 004922 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (723)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~ 371 (723)
... ..++.+.|...|++..... +.+...+..+...+...|++++|...|..+.+. .|+ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 111 1134444555555555443 334555556666666666666666666666552 222 345555666
Q ss_pred HHHccCCHHHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDM 389 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m 389 (723)
.|...|+.++|...|++.
T Consensus 264 ~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHH
Confidence 666666666665555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-05 Score=74.52 Aligned_cols=220 Identities=9% Similarity=0.012 Sum_probs=163.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCc-ccHHHHHHHHh----hhc--
Q 004922 233 KKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVT-LNIYVFNSLMN----VNA-- 302 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~----~~~-- 302 (723)
+....++|+..++.+... .| +..+|+.-..++...| +++++++.++.+.....+ ..+..+...+- ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 333446899999888874 34 4667888888888888 899999999988876432 22222222222 112
Q ss_pred -CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH--HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC-
Q 004922 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW- 378 (723)
Q Consensus 303 -~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~- 378 (723)
+++++++++++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++... -+.|...|+.-...+...++
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGG
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcccc
Confidence 57888999999998765 557788888777788888888 999999998874 34577788877777777776
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHH
Q 004922 379 -----WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ-AMHLFEEMLQAG--CEPNSQCCNILLQACVEACQFD 450 (723)
Q Consensus 379 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~ 450 (723)
++++++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+.++|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999988765 88999988888888887444 445555554432 2457788999999999999999
Q ss_pred HHHHHHHHhhh
Q 004922 451 RAFRLFRSWTL 461 (723)
Q Consensus 451 ~a~~l~~~~~~ 461 (723)
+|.++++.+..
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-06 Score=90.65 Aligned_cols=150 Identities=10% Similarity=-0.032 Sum_probs=80.5
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 205 ~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
|++++|.+.+++. |.+..++..+...|...|++++|...|++..+... .+...+..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444432 33334444555555555555555555555444211 234444455555555555555555444
Q ss_pred HHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc
Q 004922 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (723)
Q Consensus 281 ~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~ 360 (723)
+..+ .. +.+...+..+..+|...|++++|.+.|++..+. .+
T Consensus 82 ~al~---------------------------------~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p 122 (568)
T 2vsy_A 82 QASD---------------------------------AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LP 122 (568)
T ss_dssp HHHH---------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHh---------------------------------cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 4433 22 335667777777888888888888888877763 22
Q ss_pred ccHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCC
Q 004922 361 LDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~ 394 (723)
.+...+..+...+... |++++|.+.+++..+.+.
T Consensus 123 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 3456677777777777 888888888888776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-05 Score=73.16 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc-C----ChHHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-H----DLKFTLEVYKN 314 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~----~~~~a~~~~~~ 314 (723)
|++.|.+..+. -+..++..+...|...+++++|+..|++..+.| +...+..+-..+. + ++++|.+.|++
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44455555443 245555555555555566666666666655544 1222222211111 2 55566666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHHHHHc----cCCHHHHH
Q 004922 315 MQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD----AKWWQMAL 383 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~----~g~~~~a~ 383 (723)
..+.| ++..+..|...|.. .+++++|.+.|++... ..++ ...+..|...|.. .+++++|.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 55543 45555556666655 6677777777777664 2232 5566666666766 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 428 (723)
..|++..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777765 12344566666666543 2 6777777777777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-06 Score=90.42 Aligned_cols=152 Identities=8% Similarity=-0.094 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~ 346 (723)
.|++++|.+.|++..+... .+...|..+-.. ..|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888776521 224444444433 3478888888888887764 34567777888888888888888888
Q ss_pred HHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 004922 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEE 423 (723)
Q Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~ 423 (723)
|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++
T Consensus 80 ~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888763 2335667888888888888888888888888776433 567778888888888 888888888888
Q ss_pred HHHcC
Q 004922 424 MLQAG 428 (723)
Q Consensus 424 ~~~~~ 428 (723)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 87764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-06 Score=79.28 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..+...|++++|...+.+.+.......... ........+...+...|++++|+..++++++.......
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-- 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC--
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc--
Confidence 34455667777888888888888888777643211111 11222334555567778888888888887753221111
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC----cchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA----DILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~ 226 (723)
.......+......+...|++++|+..|+++++.. +..+.+ ..+++.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHh
Confidence 11112233333444445788888888777765311 001111 146788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 283 (723)
++..|...|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...|++..
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8999999999999999998876431 111 166789999999999999999 77777655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.3e-06 Score=75.03 Aligned_cols=161 Identities=14% Similarity=0.007 Sum_probs=117.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
..++..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4567777777888888888888888887753 56777777777777 6 7888888888887765 2333333
Q ss_pred HHhhh------cCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 297 LMNVN------AHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 297 ll~~~------~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
+-..+ .++++.|++.|++..+.|.. .++..+..|...|.. .+++++|...|++... ...+...
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~a 164 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS------LSRTGYA 164 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------TSCTTHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH------cCCCHHH
Confidence 33322 35788888888888876521 126777788888888 7889999999999876 2235556
Q ss_pred HHHHHHHHHcc-C-----CHHHHHHHHHHHHHCCC
Q 004922 366 YSTIVKVFADA-K-----WWQMALKVKEDMLSAGV 394 (723)
Q Consensus 366 ~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 394 (723)
+..|...|... | ++++|...|++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777777653 3 89999999999888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=0.002 Score=67.27 Aligned_cols=352 Identities=8% Similarity=-0.014 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCc-ccHHHHHHHHhhhc------CCh
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~-g~~-~~~~~~~~ll~~~~------~~~ 305 (723)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999998873 4788888888887766663 45667788877654 543 36677888777643 356
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc--------------CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~ 371 (723)
+.+.++|++........-...|...... ... +.+..|..+++.+...... .+...|...+.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~ 180 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHH
Confidence 6788888888763211111122211111 111 1222233333333321100 12223333333
Q ss_pred HHHccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 372 VFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 372 ~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
--...+ ..+.+..+|++++...+ -+...|...+..+.+.|+.+.|..++++.... +.+...+. .|.
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~ 253 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYG 253 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHH
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHH
Confidence 211110 02334556666655432 24555555555566666666666666666655 22221111 121
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
.....++. ++. +...
T Consensus 254 ~~~e~~~~---~~~--------------------------------------------------------------l~~~ 268 (493)
T 2uy1_A 254 LVMDEEAV---YGD--------------------------------------------------------------LKRK 268 (493)
T ss_dssp HHTTCTHH---HHH--------------------------------------------------------------HHHH
T ss_pred hhcchhHH---HHH--------------------------------------------------------------HHHH
Confidence 11111111 111 1111
Q ss_pred Hhh-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 004922 525 CCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR-SKRLKQA 602 (723)
Q Consensus 525 ~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A 602 (723)
+.. ..+.+. . .. .......|...+..+.+.++.+.|..+|++. ... .++...|......-.. .++.+.|
T Consensus 269 ~~~~~~~~~~-----~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 269 YSMGEAESAE-----K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp TC----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHhhccchhh-----h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHH
Confidence 100 000000 0 00 0011245666666666778899999999999 321 2344444332222222 3479999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccc
Q 004922 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEV 681 (723)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~ 681 (723)
.++|+...+.- .-++..|...++...+.|+.+.++. +|++.. -....|...++-=.+ |+.+.+..++++.
T Consensus 340 r~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~---l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 340 YNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARA---LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH---HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988642 2245567777887788898777554 666652 135566666653333 6666666655554
Q ss_pred hH
Q 004922 682 TL 683 (723)
Q Consensus 682 ~~ 683 (723)
..
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=72.09 Aligned_cols=116 Identities=6% Similarity=-0.089 Sum_probs=84.9
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
..+|+. ...+......+.+.|++++|+..|++++.. +|..... +.++...+...|++++|+..|+++++
T Consensus 7 ~inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~~~~~~~~~~~~~~A~~~~~~al~-- 75 (126)
T 4gco_A 7 YINPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL------YSNRAACLTKLMEFQRALDDCDTCIR-- 75 (126)
T ss_dssp CCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHhhHHHhhccHHHHHHHHHHHHH--
Confidence 356777 788888999999999999999999999988 6664433 34445558899999999999999998
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
+.|+.. .. +......+...|++++|+..|++.++.. |++......+.
T Consensus 76 ~~p~~~---~a---~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 76 LDSKFI---KG---YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp HCTTCH---HH---HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhhhhh---HH---HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 455432 22 3333334445899999999999988865 66655544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-06 Score=72.02 Aligned_cols=90 Identities=8% Similarity=0.036 Sum_probs=45.8
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHh
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGK 233 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 233 (723)
+......+.+.|++++|+..|++++... |.+...|..++.++...|++++|+..|+++ |.+..++..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3333334445677777777777776654 555544444444444444444444444432 4444444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 004922 234 KRDLVSALRAYDASKK 249 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~ 249 (723)
.|++++|...|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=84.92 Aligned_cols=193 Identities=6% Similarity=-0.026 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..|++++.. .|.... .+.++...+...|++++|+..++++++ +.|+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~- 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAV------YYTNRALCYLKMQQPEQALADCRRALE--LDGQSV- 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCH-
Confidence 567788899999999999999999999998 555333 334555568899999999999999997 566433
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH-hhhCCCCcchHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACIVPRADILFCNFVR 229 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~l~~ 229 (723)
..+..+. ..+...|++++|+..|+++++.. |++...+...+....+..+....... -...+.+......+..
T Consensus 73 --~~~~~lg---~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 73 --KAHFFLG---QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp --HHHHHHH---HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred --HHHHHHH---HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2333333 34445899999999999988754 43322111111111111111111111 1223444444444433
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 285 (723)
.+ .|++++|++.++...+. .|+ ......+...+.+. +.+++|.++|..+.+.
T Consensus 146 l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 LI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 32 68888888888877663 343 33444444445554 6678888888877653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-05 Score=72.72 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
+..+...+...|++++|...|++.. .|+..++..+...|...|++++|+..|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 4556667777788888887777663 3567777777777878888888877777665431
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC----------ccc-cHHHHHHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKV 372 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~----------~~~-~~~~~~~ll~~ 372 (723)
+.+...+..+..++...|++++|...|+.......... ..| ....+..+..+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 23455666777777778888888888777766321110 111 22567777778
Q ss_pred HHccCCHHHHHHHHHHHHHCCC
Q 004922 373 FADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
|...|++++|...|++......
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888888877543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00032 Score=68.11 Aligned_cols=129 Identities=9% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TI 399 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~ 399 (723)
..+..+...|++++|..++++.... ....++. ..+..+...+...+++++|...|++....... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3466788899999999999988762 1122332 13345666777788999999999999874322 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQA-----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+++.+...|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888899999999999999999888741 1122 22367778888889999999988887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-06 Score=71.02 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.....+. +...|..+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 4444555555566666666666655542 1223445555555566666666666666665554332 445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004922 406 NACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+|.+.|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3e-05 Score=67.86 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... +...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 345667788889999999999999998873 2346778889999999999999999999999887533 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI--LLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+..++...|++++|...|++..+.. +.+...+.. ....+.+.|++++|...+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998864 335555533 34447788999999999987654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-05 Score=63.63 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|..+++++..... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 456777888889999999999999988763 234567788888899999999999999999887643 36778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+...+...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 8999999999999999999888764 3455555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-05 Score=64.58 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+......|.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..|++.++.+.. +...|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 346677888899999999999999998874 2446778888999999999999999999999887544 6788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+..++...|++++|...|++..+.. +-+...+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999988863 2344444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-05 Score=64.98 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=97.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++....... +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHH
Confidence 4566777888889999999999999998863 2346678888889999999999999999999876433 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (723)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|+.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999988764 44677777777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-05 Score=71.79 Aligned_cols=129 Identities=10% Similarity=-0.116 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+...|++++|...|++. +.|+...|..+...|...|++++|...|++....... +...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence 3456677888999999999999865 3467889999999999999999999999999877533 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.+|...|++++|...|++..+.... | ....+..+..+|.+.|++++|...|+......
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885311 1 23678888899999999999999999887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00044 Score=67.11 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CC
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PN 397 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p~ 397 (723)
..+...+..+...|++++|.+.+....... . ..++ ...+..+...+...|++++|...+++....... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE--E-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--C-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc--c-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 345566778889999999999998877521 0 1111 122444566677889999999999998754221 11
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 398 --TITWSSLINACANAGLVEQAMHLFEEMLQ---A-GCEP--NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
..+|+.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44788899999999999999999998873 2 1111 12578888889999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-05 Score=76.05 Aligned_cols=182 Identities=10% Similarity=-0.017 Sum_probs=118.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
.+...+..+...|++++|...+++.+.... .|... .....+..+...+...|++++|+..|+++++........
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-- 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ---QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-- 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH---HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH---HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--
Confidence 344457788889999999999999988632 22211 112222335555778889999999999998742222111
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC-cccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
......+......+...|++++|+..|+++++.-... .+. +....++.+++..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------------------EFDVKVRYNHAKA 205 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH--------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch--------------------------hHHHHHHHHHHHH
Confidence 1112233344444555899999999998876411000 000 0012467888899
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 004922 231 FGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICG-DYMKSRAIYEDLRSQ 285 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 285 (723)
|.+.|++++|+..+++..+. +..+. ..+|..+..+|.+.| ++++|.+.|++....
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999998876642 22222 678999999999999 469999998887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.4e-06 Score=76.44 Aligned_cols=186 Identities=8% Similarity=-0.117 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHH-------HHHHhcCCChHHHHHHhhhC----CCC----------------
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI-------VQLCVNKPDVNLAIRYACIV----PRA---------------- 220 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~----~~~---------------- 220 (723)
.++...|.+.|.++.... |.....|..+ +.++.+..+..+++..+... |..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 689999999999998866 7777777666 34444433333333322221 110
Q ss_pred -----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 221 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. +..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~--- 168 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKF--- 168 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHH---
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---Ccc---
Confidence 1122335566667777777777777665532 332255555556667777777777776433221 000
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHHHHHHHH
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVF 373 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~ll~~~ 373 (723)
.....+..+..++...|++++|+..|++... |...| ..........++
T Consensus 169 --------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL 218 (282)
T 4f3v_A 169 --------------------------LAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMAR 218 (282)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHH
Confidence 0122445566677777777777777777653 22213 223455566667
Q ss_pred HccCCHHHHHHHHHHHHHCC
Q 004922 374 ADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~ 393 (723)
.+.|+.++|..+|+++....
T Consensus 219 ~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 219 RSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=77.71 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
+...+..+...+.+.|++++|...|++.+..... +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445566666677777777777777777665332 56667777777777777777777777776653 345566777777
Q ss_pred HHHHhCCHHHHHHHHHHhhhh
Q 004922 442 ACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+|...|++++|...|+.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-05 Score=64.67 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=94.2
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
+.+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++....... +...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHH
Confidence 345667778888899999999999999998762 2346778888888999999999999999999876533 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (723)
+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8889999999999999999999888763 234455666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=9.8e-06 Score=69.49 Aligned_cols=110 Identities=11% Similarity=-0.034 Sum_probs=82.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..++..+...|++++|+..|++++.. +|.....+ ..+...+...|++++|+..|++
T Consensus 10 ~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 10 IAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFF------LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHH------HHHHHHHHHHhhHHHHHHHHHH
Confidence 44567788888 788888999999999999999999999988 56544333 3444458899999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
+++ +.|+.. ..+..+. ..+...|++++|+..|++.++..
T Consensus 81 al~--l~p~~~---~~~~~lg---~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 81 GAV--MDIXEP---RFPFHAA---ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH--HSTTCT---HHHHHHH---HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCCc---hHHHHHH---HHHHHcCCHHHHHHHHHHHHHHC
Confidence 987 455432 2332333 33445899999999999988755
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00016 Score=70.49 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC-ChHHHHHHhhhC----CCCcchHHHHHHHHHhc-C-CHHHHH
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCNFVREFGKK-R-DLVSAL 241 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~-~-~~~~A~ 241 (723)
+..++|+++++.++... |+....|+.-...+...+ .+++++.+++.+ |++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457788888877765 666666655555555444 244444443332 44444444433333333 3 444555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~ 321 (723)
.+++.+.+... .|..+|+....++.+.|.++.+ + ...+.++++.++++.+.. +
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~--------------~-----------~~~~~eELe~~~k~I~~d-p 198 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRI--------------S-----------EAQWGSELDWCNEMLRVD-G 198 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCC--------------C-----------HHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcccccc--------------c-----------hhhHHHHHHHHHHHHHhC-C
Confidence 55555444321 2344444333333333322200 0 000124555555555543 3
Q ss_pred cChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH---------------
Q 004922 322 ADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW--------------- 379 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~--------------- 379 (723)
-|...|+.....+.+.+. ++++++.+++.... .+-|...|+.+-..+.+.|+.
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 355555555555555544 45666666555542 234555565555545444432
Q ss_pred -----HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 380 -----QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 380 -----~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.........+...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 1346777778888888888888888888887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-05 Score=70.00 Aligned_cols=165 Identities=16% Similarity=0.029 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (723)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------- 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------------------------- 55 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------------------------
Confidence 4568888888855555431 2235667888888888999999999888876542
Q ss_pred HHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 312 YKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 312 ~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+. ..+. .....++..+...+...|++++|.+.+++...........+ ....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11 1111 12345677777888889999999998888876533221111 234577777888888888888888888
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 389 MLSAGV-TPN----TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 389 m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
...... ..+ ..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 764210 011 23456777778888888888887776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-05 Score=65.60 Aligned_cols=130 Identities=14% Similarity=-0.056 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~ 58 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYL 58 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 3456666666777777777777777665431 235666777777888
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCC
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS--SLINACANAGL 413 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~ 413 (723)
..|++++|...+++.... .+.+...+..+..++...|++++|...|++....... +...+. .++..+.+.|+
T Consensus 59 ~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~ 132 (166)
T 1a17_A 59 RTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKA 132 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 888888888888888763 2345667788888888888888888888888776433 444443 33334667788
Q ss_pred HHHHHHHHHHHH
Q 004922 414 VEQAMHLFEEML 425 (723)
Q Consensus 414 ~~~a~~~~~~~~ 425 (723)
+++|...+....
T Consensus 133 ~~~A~~~~~~~~ 144 (166)
T 1a17_A 133 FERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHcccchH
Confidence 888888776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.9e-06 Score=68.96 Aligned_cols=110 Identities=6% Similarity=-0.112 Sum_probs=80.0
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..++..+.+.|++++|+..|++++.. +|.....+ ..+...+...|++++|+..|++
T Consensus 7 l~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 7 LAMLRGLSEDT-LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYF------LGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp --CCTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHH------HHHHHHHHHHhhHHHHHHHHHH
Confidence 33456677777 777888899999999999999999999988 66544333 3344458899999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
+++. .|+.. ..+..+.. .+...|++++|+..|++++...
T Consensus 78 al~~--~p~~~---~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 78 GALM--DINEP---RFPFHAAE---CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHH--CTTCT---HHHHHHHH---HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCCc---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC
Confidence 9984 55432 22223333 3444899999999999887755
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.8e-06 Score=72.06 Aligned_cols=116 Identities=6% Similarity=-0.010 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCCH--HHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRDL--VSA 240 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~~~~--~~A 240 (723)
.|++++|+..+++.+... |.+...+..++..+...|++++|...++.+ |.+..++..+... |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 789999999999988766 777788888999999999999998887774 6677788888888 7788888 999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
...|+...+... .+...+..+...|...|++++|...|+.+.+..
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999988887532 357778888888889999999999998888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-05 Score=76.64 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----------------HHHHHHHHHHHHccCCHHHHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
+...+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778888999999999999999999874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHhhh
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~l~~~~~~ 461 (723)
++.+...+. +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987644 78899999999999999999999999999874 45677888899999999999988 456666654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00048 Score=67.21 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=156.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHh---hhc
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMN---VNA 302 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---~~~ 302 (723)
+.....+.+..++|+++++.+...+. -+..+|+.--.++...| +++++++.++.+..... -+...|+.--. ...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhc
Confidence 33344455566788888888887432 25667777777777777 58888888888887643 23444443222 222
Q ss_pred C-ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH--------HHHHHHHHHHhhhhcCCccccHHHHHHHHHHH
Q 004922 303 H-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (723)
Q Consensus 303 ~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--------~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~ 373 (723)
+ ++++++++++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+. .+.|...|+.....+
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-----DGRNNSAWGWRWYLR 211 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 4 7788888888888765 446677766555555555555 888888888773 345778898888888
Q ss_pred HccCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHH
Q 004922 374 ADAKW-------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV--------------------EQAMHLFEEMLQ 426 (723)
Q Consensus 374 ~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~ 426 (723)
.+.++ ++++++.+++.+...+. |...|+.+-..+.+.|.. ........++..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 88776 78999999999987655 888898877777776653 222222222222
Q ss_pred cC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 427 AG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 427 ~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+ -.++...+..+.+.|...|+.++|.++++.+...
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 21 1468888999999999999999999999988643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00011 Score=60.21 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 5567777777788888888888877766431 234556666777777
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
..|++++|...|+.+... .+.+...+..+...+...|++++|...++++....+. +...+..+...+.
T Consensus 55 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 788888888888777653 2345567777777788888888888888887765432 4445555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=68.05 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+. +...+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 444555566666677777777777766652 2234556666666666777777777777766655432 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 404 LINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666777777777766666553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.1e-05 Score=68.80 Aligned_cols=119 Identities=10% Similarity=0.115 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH-HHccCCH--
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~-~~~~g~~-- 379 (723)
++++.|...++...... +.+...+..+...|...|++++|...|++.... .+.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhcCCcch
Confidence 46667777777776654 456778888889999999999999999998874 23356677777877 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
++|...+++.....+. +...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999887543 67788888999999999999999999988763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-05 Score=69.15 Aligned_cols=159 Identities=10% Similarity=-0.025 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc-cccHHHHHHHHHHHHccCCHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~-~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
|+++.|.+.++.+.. .......++..+...+...|++++|...+++.......... ......+..+...+...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455666664433322 11234667888888999999999999999998875443222 2234578888899999999999
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHhCCHH
Q 004922 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (723)
Q Consensus 382 a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~g~~~ 450 (723)
|...+++.... +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999987653 2111 23467888889999999999999999876421 1111 234677788899999999
Q ss_pred HHHHHHHHhhhh
Q 004922 451 RAFRLFRSWTLS 462 (723)
Q Consensus 451 ~a~~l~~~~~~~ 462 (723)
+|.+.+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-05 Score=75.95 Aligned_cols=130 Identities=9% Similarity=-0.031 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
..++..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35677777888888888888888888776432211 3455555555555566655555555544321
Q ss_pred CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
+.+...+..+..+|...|++++|...|+++..+ .+.+...+
T Consensus 227 ----------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~ 267 (336)
T 1p5q_A 227 ----------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAK 267 (336)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHH
T ss_pred ----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence 223445555555666666666666666665552 12234455
Q ss_pred HHHHHHHHccCCHHHH-HHHHHHH
Q 004922 367 STIVKVFADAKWWQMA-LKVKEDM 389 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a-~~~~~~m 389 (723)
..+..++.+.|++++| ..+|..|
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555 2344443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00051 Score=66.69 Aligned_cols=115 Identities=9% Similarity=-0.049 Sum_probs=64.2
Q ss_pred cchHH-HHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCC----------hHHHHHHhhh----CCCCcchHHHHHHHHH
Q 004922 168 SGEVE-MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD----------VNLAIRYACI----VPRADILFCNFVREFG 232 (723)
Q Consensus 168 ~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~----~~~~~~~~~~l~~~~~ 232 (723)
.|.+. +|+++++.++... |+....|+.-...+...+. +++++.+++. -|.+..+|+.-.-.+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 45554 7899999998866 7777777765555543332 2344444333 2555555555444444
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC
Q 004922 233 KKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ 285 (723)
Q Consensus 233 ~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~ 285 (723)
+.+ .+++++.+++.+.+... .|..+|+.-..++...|. ++++++.++.+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 444 25566666666555422 345555555555555555 35555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=60.52 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+.+.|++++|...|++.... .+.+...|..+..+|.+.|++++|+..+++.+...+. +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 445667778888999999999999988873 2345678888888899999999999999998877543 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 404 LINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..++...|++++|...|++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Confidence 888999999999999999888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.6e-05 Score=61.86 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|+..|++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------------- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------
Confidence 3556667777777777777777777776642 1356667777777777777777777776665431
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+.+...+..+..++...|++++|.+.|++...
T Consensus 81 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 81 --------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22445566666667777777777777777665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=60.69 Aligned_cols=119 Identities=13% Similarity=-0.066 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666677777777777777777665431 23455666677777
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
...|++++|.+.++..... .+.+...+..+...+...|++++|...|++....... +...+..+..++.+.|+
T Consensus 57 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 7778888888877777663 2234566777777777888888888888777765432 55666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=60.87 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~---- 397 (723)
...+..+...+.+.|++++|.+.|++...+ .+.+...|..+..+|.+.|++++|++.+++.++.... ++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 345667888899999999999999998874 2345677888999999999999999999988764221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
..+|..+..++...|++++|++.|++.... .||+.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 236777888888999999999999988765 566655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=68.35 Aligned_cols=150 Identities=7% Similarity=-0.107 Sum_probs=96.8
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+...|++++|+..+++++.... ...........+..+...+...|++++|...++++.+.. +...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhC
Confidence 466788899999999999999999999988732 211112223455677777899999999999999987631 1110
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
........+......+...|++++|+..+++.+...... ++. +....++..+..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~----------~~~~~~~~~la~ 137 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDR----------IGEGRACWSLGN 137 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCH----------HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cch----------HhHHHHHHHHHH
Confidence 001112233333334445788899988888766432000 000 001245667788
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.|...|++++|...+++..+
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888888888888887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00023 Score=57.62 Aligned_cols=108 Identities=19% Similarity=0.052 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 455667778888889999999999888763 2346677888888888899999999999888876433 6777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
+..++...|++++|...+++..+.. +.+...+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 111 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEG 111 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 8888889999999999998887653 234444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-05 Score=70.29 Aligned_cols=123 Identities=13% Similarity=-0.022 Sum_probs=60.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
..+..+...+...|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..++...+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 4455566666677777777777777665321111 134444444444555555554444444332
Q ss_pred CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
. +.+...+..+..+|...|++++|...|++...+ .+.+...+
T Consensus 118 --------------------------------~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 159 (198)
T 2fbn_A 118 --------------------------------D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIR 159 (198)
T ss_dssp --------------------------------S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred --------------------------------C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence 1 223444555555555666666666666555542 12233444
Q ss_pred HHHHHHHHccCCHHHHH
Q 004922 367 STIVKVFADAKWWQMAL 383 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~ 383 (723)
..+..++...++.+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-05 Score=60.37 Aligned_cols=97 Identities=9% Similarity=0.035 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 004922 189 KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTI 262 (723)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l 262 (723)
++...+..++..+...|++++|...++.+ |.+..++..+...+...|++++|...|++..+... . +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 33444444555555555555555544432 44456666777777777777777777777776432 2 46677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCC
Q 004922 263 IDVCGIC-GDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 263 ~~~~~~~-g~~~~a~~~~~~m~~~g 286 (723)
...+... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777776653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0005 Score=71.13 Aligned_cols=217 Identities=6% Similarity=-0.084 Sum_probs=107.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
+.-+..+...|++++|++.|..++.......+..... +....... ....++..++..|...|+++
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~------~~~~al~~l~~~y~~~~~~~ 72 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA---------SVDDKRRN------EQETSILELGQLYVTMGAKD 72 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS---------SBCSHHHH------HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH---------HHHHHHhh------hHHHHHHHHHHHHHHCCCHH
Confidence 3344455668999999999999987653322211000 00000000 00134566778888888888
Q ss_pred HHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccc-HHHHHHHHhhh--cCChH
Q 004922 239 SALRAYDASKKHL-SSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNVN--AHDLK 306 (723)
Q Consensus 239 ~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~--~~~~~ 306 (723)
+|.+.+..+...- ..++. .+.+.+...+...|++++|..+++..... +..+. ..++..+...+ .|+++
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH
Confidence 8888777755421 11121 23344444455567888888887776532 11111 12222222222 24555
Q ss_pred HHHHHHHHHHHc--CC---CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccCCH
Q 004922 307 FTLEVYKNMQKL--GV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW 379 (723)
Q Consensus 307 ~a~~~~~~m~~~--g~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g~~ 379 (723)
.|..+++++... +. +....++..++..|...|++++|..++++.......-..++. ...+..+...+...+++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 555555444321 10 111334555566666666666666666665543222111111 12344444455555666
Q ss_pred HHHHHHHHHHH
Q 004922 380 QMALKVKEDML 390 (723)
Q Consensus 380 ~~a~~~~~~m~ 390 (723)
++|...|.+..
T Consensus 233 ~~A~~~~~~a~ 243 (434)
T 4b4t_Q 233 KTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00025 Score=61.88 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=86.5
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
.+...+..+...+...|++++|...|++.... .+.+...|..+..+|.+.|++++|+..|++.+..... +...|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 34567778888999999999999999999874 2346778999999999999999999999999987644 68889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+..+|...|++++|...|++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999998875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=60.41 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~---- 397 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345667778888899999999999988763 2346677888888888999999999999888765321 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
..++..+...+...|++++|...|++..+. .|+......+..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 667888888899999999999999988875 3566555554444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00018 Score=59.36 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
...|..+...+.+.|++++|...|++.+...+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456777888899999999999999999987544 78899999999999999999999999999874 4568889999999
Q ss_pred HHHhCCHHHHHHHHHHhhhhh
Q 004922 443 CVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~~~ 463 (723)
+...|++++|...|++.....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=61.94 Aligned_cols=95 Identities=14% Similarity=-0.040 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+. +...+..+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 93 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 3444455555666666666666665542 1234445555666666666666666666666654432 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004922 406 NACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~ 426 (723)
.+|...|++++|...|+...+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00028 Score=60.00 Aligned_cols=110 Identities=10% Similarity=-0.008 Sum_probs=87.6
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.+...+..+...+...|++++|...|++... ..|+ ...|..+..+|...|++++|...+++....... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-D 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-C
Confidence 3566777888888999999999999999887 4455 577888888999999999999999998876433 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
...+..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 7788888999999999999999999988763 2344444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00018 Score=59.57 Aligned_cols=112 Identities=13% Similarity=-0.043 Sum_probs=82.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.++..++..+.+.|++++|+..|++..+..+ .+...|+.+..+|.+.|++++|++.|++..+.. |+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~--------- 76 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETR--------- 76 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccc---------
Confidence 4677889999999999999999999887532 368889999999999999999999998877531 1000
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
..+ ..-..+|..+..++...|++++|.+.|++... ..||.....
T Consensus 77 -~~~---------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~------~~~~~~~~~ 120 (127)
T 4gcn_A 77 -ADY---------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS------EFRDPELVK 120 (127)
T ss_dssp -CCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSCCHHHHH
T ss_pred -hhh---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcCHHHHH
Confidence 000 00023566677888889999999999988876 456654433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00027 Score=59.22 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|...+++....... +...+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3444444555555555555555555555442 1223344555555555555555555555555543322 344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004922 403 SLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.+..++...|++++|...|++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.2e-05 Score=78.05 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=97.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc---CCCcccccccchh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGF 155 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~~~ 155 (723)
..+..+|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.+++++++. -..|+.. .+.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a 393 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA---QLG 393 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH---HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH---HHH
Confidence 4466889999999999999988643333334445778889999999999999999999998764 2344433 344
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
..+.++...+...|++++|+.++++.++.... .....++ ....+...+...+...+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------~lG~~Hp-----------~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLV-------------THGPSHP-----------ITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------HTCTTSH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------HhCCCCh-----------HHHHHHHHHHHHHHHHH
Confidence 45555555566689999999999887642100 0000111 11134456677777788
Q ss_pred CHHHHHHHHHHHHh
Q 004922 236 DLVSALRAYDASKK 249 (723)
Q Consensus 236 ~~~~A~~~~~~~~~ 249 (723)
.+++|..+|..+.+
T Consensus 450 ~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 450 MFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0016 Score=67.25 Aligned_cols=200 Identities=12% Similarity=-0.085 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCcc
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSP-N---------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTL 289 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~~ 289 (723)
-...+.+.|++++|++.|..+.+..... + ..++..+...|...|++++|.+.+..+... +-.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3455677899999999999887743221 1 134778899999999999999999987653 1112
Q ss_pred cHH---HHHHHHhh---hcCChHHHHHHHHHHHH----cCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC
Q 004922 290 NIY---VFNSLMNV---NAHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (723)
Q Consensus 290 ~~~---~~~~ll~~---~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~ 358 (723)
+.. .....+.. ..++++.+.+++..... .+..+. ..++..+...|...|++++|..+++.+........
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 12222222 22577777777776643 222222 34666777888888888888888887765322211
Q ss_pred ccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 359 LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GV-TP-N--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 359 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
..+ ....+..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...|.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 2346777777888888888888888776532 11 11 1 23455556666677778777777666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00026 Score=64.02 Aligned_cols=135 Identities=12% Similarity=-0.045 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
...+..+...+...|++++|...|++...+......... ...|..+..+|...|++++|+..+++.+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777888899999999999988863211100001 267888888999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhh
Q 004922 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (723)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~l~~~~~ 460 (723)
... +...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++..++. ..+..+.
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 533 67888899999999999999999999988763 446677777777777777666665 4444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00036 Score=58.45 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+.+...+..+...+...|++++|...|++.+..... +...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456778999999999999999999999999887543 67889999999999999999999999999874 4578889999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..+|...|++++|...|+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999887654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=57.28 Aligned_cols=93 Identities=14% Similarity=-0.012 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCNILLQAC 443 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 443 (723)
+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 333444444444444444444444433221 33444444444444444444444444444432 11 344444444444
Q ss_pred HHh-CCHHHHHHHHHHhh
Q 004922 444 VEA-CQFDRAFRLFRSWT 460 (723)
Q Consensus 444 ~~~-g~~~~a~~l~~~~~ 460 (723)
.+. |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 55555555444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00027 Score=61.57 Aligned_cols=102 Identities=16% Similarity=0.049 Sum_probs=90.1
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
..+...+..+...+.+.|++++|+..|++.+..... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345667888899999999999999999999987544 78899999999999999999999999999874 4568889999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..+|.+.|++++|...|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00088 Score=53.98 Aligned_cols=99 Identities=13% Similarity=-0.018 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
....+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3456778888899999999999999999886533 77888999999999999999999999998874 446888999999
Q ss_pred HHHHhCCHHHHHHHHHHhhhh
Q 004922 442 ACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~ 462 (723)
++...|++++|...++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=60.16 Aligned_cols=111 Identities=19% Similarity=0.104 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|...|+...+.. +.+...+..+...|...|++++|...|+...+...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------------- 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-------------- 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--------------
Confidence 456778888889999999999999988753 24677888888899999999999999888765310
Q ss_pred cCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
.. .++ ..++..+...+...|++++|.+.|+.+.. ..|+......+.
T Consensus 70 ---------------~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~ 119 (131)
T 1elr_A 70 ---------------EN--REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA------EHRTPDVLKKCQ 119 (131)
T ss_dssp ---------------HS--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHH
T ss_pred ---------------cc--chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCHHHHHHHH
Confidence 00 111 45666777888888999999999888877 345555444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.032 Score=54.05 Aligned_cols=116 Identities=9% Similarity=0.059 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQ 416 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~ 416 (723)
+++++.+++.+... .+.+..+|+.-...+...+ .+++++.+++.+.+..+. |-.+|+.-...+...|. +++
T Consensus 90 l~~EL~~~~~~L~~-----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRV-----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHH
Confidence 56777777777663 2446667777777777777 488888888888887655 77888877777777777 588
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHhhhh
Q 004922 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEA--------------CQFDRAFRLFRSWTLS 462 (723)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~l~~~~~~~ 462 (723)
+++.++.+.+.. +-|...|+.....+.+. +.++++++.+......
T Consensus 164 el~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 164 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 888888888764 44666676666555554 3466777777766543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00031 Score=57.50 Aligned_cols=94 Identities=10% Similarity=-0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (723)
+..+...+.+.|++++|...|++.... .+.+...|..+..++...|++++|+..|++.++..+. +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 334455566666777777766666652 1234556666666666666666666666666665433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004922 407 ACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~ 426 (723)
++.+.|++++|...+++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0012 Score=55.99 Aligned_cols=30 Identities=13% Similarity=-0.131 Sum_probs=14.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+...+..+..++...|++++|...|++...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=60.80 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~---- 397 (723)
..++..+...+...|++++|...+++........ ....-...+..+...+...|++++|...+++....... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3467778888999999999999999988753321 11111247888889999999999999999998653111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
...+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888999999999999999887653 211 12346777888899999999999999887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00073 Score=55.79 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TI 399 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 399 (723)
+..+...+...|++++|...|+.+... .|+. ..+..+..++...|++++|...|++.....+. + ..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHH
Confidence 334667788899999999999998873 2332 47777888899999999999999999876433 3 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+..+..++.+.|++++|...|+++.+.
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788888999999999999999998876
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00037 Score=57.00 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
.+..+...+.+.|++++|...|++.+...+. +...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4556677889999999999999999987544 78889999999999999999999999999874 446778889999999
Q ss_pred HhCCHHHHHHHHHHhhhh
Q 004922 445 EACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~ 462 (723)
+.|++++|...+++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00038 Score=72.20 Aligned_cols=137 Identities=5% Similarity=-0.069 Sum_probs=100.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 229 REFGKKRDLVSALRAYDASKKH-----LS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..+|++++|+.++++..+. |. .| ...+++.|..+|...|++++|..++++..
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------ 378 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------ 378 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 3466789999999999887642 21 12 24679999999999999999999998654
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccccHH-HHHHHHHHHHccCC
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYSTIVKVFADAKW 378 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~~~~-~~~~ll~~~~~~g~ 378 (723)
+++........+-...+++.|...|...|++++|..++++...+... |.-.|++. +.+.+-.++...+.
T Consensus 379 --------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 --------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp --------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 44555544443334567889999999999999999999988764432 43344443 45666677778888
Q ss_pred HHHHHHHHHHHHH
Q 004922 379 WQMALKVKEDMLS 391 (723)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (723)
+++|+.+|..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00072 Score=57.23 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-------CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-----G 393 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~ 393 (723)
.+......+.+.|++++|...|++...+.... ..+.+...|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455666777788888888888877742110 00001225666666666666666666666666653 0
Q ss_pred CCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 394 VTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 394 ~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
+.| +...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 122 23344 5555555566666666666555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00071 Score=55.86 Aligned_cols=90 Identities=9% Similarity=-0.022 Sum_probs=57.1
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|++++... |++.. ...++..+...|...|++++|...|+
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~--p~~~~---------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELY--PNGVY---------------------------TPNALYWLGESYYATRNFQLAEAQFR 63 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SSSTT---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCcc---------------------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34688888888888777644 33220 00355556666677777777777777
Q ss_pred HHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 246 ASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 246 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+... .+ ..++..+..++...|++++|...|+.+.+.
T Consensus 64 ~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 64 DLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7665432 12 455666677777777777777777777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00058 Score=70.94 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----------------HHHHHHHHHHHHccCCHHHHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
....+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW------LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3556778888999999999999999999874 233 478899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhh
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~l~~~~~ 460 (723)
++.+..... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++. .+++.|.
T Consensus 341 ~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 341 DKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987644 78899999999999999999999999998863 335567888888888888888776 4555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=75.66 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=72.6
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH---------HHHhhHHHHHhHHHhhhccCccchHHH
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF---------ASMLSLEMVASGIVKSIREGRIDCVVG 134 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~ 134 (723)
..+|.. ...+..+...+.+.|++++|+..|++++... |... .......++.++...+.+.|++++|+.
T Consensus 262 ~~~~~~-a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 262 KEKLEQ-AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344555 7788899999999999999999999999884 3321 000112333455555667777777777
Q ss_pred HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
.|+++++ +.|+.. ..+.+....+...|++++|+..|+++++.. |++...+..+..++.
T Consensus 339 ~~~~al~--~~p~~~------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 339 CCDKALG--LDSANE------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHH--HSTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHH
T ss_pred HHHHHHh--cCCccH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7777766 334321 222222333334667777777776666543 444333333333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=6.6e-05 Score=78.44 Aligned_cols=111 Identities=10% Similarity=-0.094 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|++++|++.|+++++.. |+....+..++.++.+.|++++|++.++++ |.+..++..+...|...|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3799999999999998865 777788888888888888888888877664 6666778888888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYE 280 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 280 (723)
.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888776432 133344444444 677788888888777
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0012 Score=66.31 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-----------CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
..+..+...+.+.|++++|...|++........ ..+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677888899999999999999887621110 022345678899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004922 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.. +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67889999999999999999999999998863 3366677777777777766666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00033 Score=56.88 Aligned_cols=89 Identities=15% Similarity=-0.000 Sum_probs=65.3
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|...|++..... ...+.+...+..+..+|...|++++|...|++.++..+. +...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3577888888888887620 000234557888888889999999999999998877544 5778888888899999999
Q ss_pred HHHHHHHHHHHc
Q 004922 416 QAMHLFEEMLQA 427 (723)
Q Consensus 416 ~a~~~~~~~~~~ 427 (723)
+|...+++....
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=73.35 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=92.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+.... +..+|..+..+|.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344566789999999999998873 2345778999999999999999999999999987544 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHH
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~l~~~ 458 (723)
+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999988763 2233445445444 7888999999998874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0019 Score=56.02 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-----C--------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----V--------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-----~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
...+......+.+.|++++|...|.+........ . .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456677888999999999999999988741100 0 01234578889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
...+. +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87544 6888999999999999999999999999886
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=58.04 Aligned_cols=88 Identities=8% Similarity=0.020 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 375 DAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
..|++++|+..|++.++.+. +-+...+..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45788999999999998641 2245678899999999999999999999999874 44678889999999999999999
Q ss_pred HHHHHHhhhhh
Q 004922 453 FRLFRSWTLSK 463 (723)
Q Consensus 453 ~~l~~~~~~~~ 463 (723)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=68.90 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH----------HHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF----------ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
...+..++..+.+.|++++|+..|++++.. .+... ........+.++...+.+.|++++|+..+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456778899999999999999999999874 11100 011123344555556777777777777777777
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
+ +.|+.. ..+......+...|++++|+..|+++++.. |++...+..+...+...++.++
T Consensus 301 ~--~~p~~~------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 301 E--IDPSNT------KALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp T--TCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCchhH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 6 344322 122222233344677777777777776654 4444444444444444333333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0031 Score=67.04 Aligned_cols=172 Identities=8% Similarity=-0.108 Sum_probs=116.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc----------cchHHHHHHHHhhcCCCcccccccc
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~ 153 (723)
...-++|+..+++++.. +|..++.+...+.+ +...|+ ++++++.++.+++. .|...
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~------l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y---- 107 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREV------LQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY---- 107 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHH------HHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCH----
Confidence 34446889999999999 78777665444333 333444 88999999999874 45332
Q ss_pred hhhhhHHHHHHhhccc--hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC-ChHHHHHHhhhC----CCCcchHHH
Q 004922 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
.++..-.-.+...| +++++++.++++++.. |.+...|+.-..++...+ .+++++++++.+ |.+..+|+.
T Consensus 108 --~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 108 --GTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp --HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred --HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 22222222233456 6799999999999866 778888888888877777 778888776664 566677777
Q ss_pred HHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (723)
Q Consensus 227 l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (723)
....+.+. +.++++++.++......+ -|..+|+.+...+.+.++.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 66665553 456788888877776432 356677777777766666433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00038 Score=69.03 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=78.1
Q ss_pred HHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
+......+...|++++|+..|+++++. .|+.. . +...|+.+++...+. ...+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~----~----------~~~~~~~~~~~~~l~-----------~~~~~ 234 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF----M----------FQLYGKYQDMALAVK-----------NPCHL 234 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH----H----------HTCCHHHHHHHHHHH-----------THHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch----h----------hhhcccHHHHHHHHH-----------HHHHH
Confidence 345566688999999999999999873 45322 0 111455555544332 12467
Q ss_pred HHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHhc
Q 004922 196 RIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDV-CGIC 269 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~ 269 (723)
.++..+.+.+++++|+..++.+ |.+..++..+..+|...|++++|+..|+...+. .| +..++..+... ....
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence 7888888888888888877764 667788888999999999999999999988764 34 44556666555 3344
Q ss_pred CCHHHHHHHHHHHHhC
Q 004922 270 GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 270 g~~~~a~~~~~~m~~~ 285 (723)
+..+++..+|..|...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 6777888888888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0034 Score=54.29 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA--------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
...+......+.+.|++++|...|.+.+.. .. +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788899999999999999998864 11 1134678889999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+.. +.+...|..+..+|...|++++|...|+.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 874 557889999999999999999999999987764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00054 Score=67.95 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH------------------HHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV------------------FTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~------------------~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+..+...+.+.|++++|...|++... ..|+. ..|..+..+|.+.|++++|+..+++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~------~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA------YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH------HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555566666666666666554 22332 2778888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhhhh
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+..... +...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+...|..+...
T Consensus 256 al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8876533 67888899999999999999999999887642 2233344444443 22345666777777776544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0034 Score=53.08 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP------NT-----ITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 427 (723)
...+......+.+.|++++|+..|++.++..+.. +. ..|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445666777889999999999999998764331 22 38999999999999999999999999875
Q ss_pred -CCCC-CHHHH----HHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 428 -GCEP-NSQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 428 -~~~~-~~~~~----~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.+.| +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1144 45567 888889999999999999999887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0059 Score=64.89 Aligned_cols=143 Identities=5% Similarity=-0.102 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
...++|++.+++++... |+....|+.-..++...++... .. .....+++++..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~-----------~~---------~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKS-----------PE---------ESAALVKAELGFLESCL 100 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSC-----------HH---------HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccc-----------hh---------hhhhhHHHHHHHHHHHH
Confidence 34457788888888766 6665555554444433332000 00 00001566666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHH--HHhhhcC-ChHHHHHHHHHHHHcCCCcC
Q 004922 249 KHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAH-DLKFTLEVYKNMQKLGVMAD 323 (723)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~--ll~~~~~-~~~~a~~~~~~m~~~g~~~~ 323 (723)
+... -+..+|+.-..++.+.+ +++++++.++++.+... -+...|+. .+-...+ .++++++.++++++.. +-|
T Consensus 101 ~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n 177 (567)
T 1dce_A 101 RVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 177 (567)
T ss_dssp HHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCC
T ss_pred HhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCC
Confidence 5322 24555666555566666 55666666666665532 12333332 2222223 5566666666666554 346
Q ss_pred hhhHHHHHHHHHH
Q 004922 324 MASYNILLKACCL 336 (723)
Q Consensus 324 ~~~~~~ll~~~~~ 336 (723)
...|+.....+.+
T Consensus 178 ~saW~~r~~ll~~ 190 (567)
T 1dce_A 178 YSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh
Confidence 6666666555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00059 Score=69.45 Aligned_cols=99 Identities=8% Similarity=-0.076 Sum_probs=73.0
Q ss_pred hhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc---CCCcccccccchhhhh
Q 004922 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFKLL 158 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~~~~~l 158 (723)
...|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.+++++++. -..|+.. .+...+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a~~l 385 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL---NVASMW 385 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---HHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHH
Confidence 3468999999999999887533222334445778889999999999999999999998864 2344333 344455
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHh
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
.++...+...|++++|+.+++++++
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5555556668999999999988764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00037 Score=58.88 Aligned_cols=108 Identities=6% Similarity=-0.064 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.+.+++|++.+++.++.. |++...|..++.++...++++.+.... +.+++|+..|++.
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~A 72 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHHH
Confidence 588899999999998866 777777776666666555443222111 1256777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 248 KKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
.+..+ .+..+|..+..+|...| ++++|++.|++..+. .|+...|...+..
T Consensus 73 L~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 73 LLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 76422 24566777777776653 778888888877765 4555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0076 Score=50.38 Aligned_cols=110 Identities=8% Similarity=-0.047 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSAL 241 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~ 241 (723)
.+++++|+..|++..+.+.. ... ++..+.....++.|.++|++. ..+..+.+.|...|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM----FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT----THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH----hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 47889999999999887722 222 666666666777777777664 3445666677777776 67777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 286 (723)
..|++..+. -+...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777664 345666667776666 667777777777766665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00078 Score=53.80 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 434 (723)
+...+..+...+...|++++|...|++.+...+. +...|..+..++.+.|++++|+..+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 3455666667777777777777777777765433 5666777777777777777777777777764 333 33
Q ss_pred HHHHHHHHHHHhCCHHHHH
Q 004922 435 CCNILLQACVEACQFDRAF 453 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~ 453 (723)
.+..+..++...|+.+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0014 Score=52.84 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
..++..+...|...|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554321 2344555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00099 Score=67.98 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---CCccccccc
Q 004922 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---VAPLELFDG 152 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~ 152 (723)
..+..+.++|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.++++++..- ..|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--- 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP--- 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH---
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh---
Confidence 34556778899999999999999875332222334457788899999999999999999999887641 334333
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHh
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
.+...+.++...+...|++++|+.+++++++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555556668999999999988764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0093 Score=45.12 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
..+..+...+...|++++|...|++....... +...+..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555556666666666555544322 44555555556666666666666666555542 22344444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=49.49 Aligned_cols=78 Identities=14% Similarity=-0.065 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
+++.|++..+.. +.+...+..+...|...|++++|...|++.... .+.+...|..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444455554433 234555666666666666666666666666552 12234456666666666666666666666
Q ss_pred HHHH
Q 004922 388 DMLS 391 (723)
Q Consensus 388 ~m~~ 391 (723)
+...
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.025 Score=47.10 Aligned_cols=110 Identities=14% Similarity=-0.028 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~ 379 (723)
++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+ . -+...+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~---~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE---L----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc---C----CCHHHHHHHHHHHHcCCCCCccH
Confidence 4455555565555554 22222 44444455556666666666554 1 244555555555555 5666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 428 (723)
++|...|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666554 44555566666665 566666666666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0096 Score=45.05 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++.....+. +...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 3556777888899999999999999998873 2345678888899999999999999999999876533 566676
Q ss_pred HHHHHHHhc
Q 004922 403 SLINACANA 411 (723)
Q Consensus 403 ~li~~~~~~ 411 (723)
.+...+.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0027 Score=49.62 Aligned_cols=68 Identities=13% Similarity=-0.034 Sum_probs=54.8
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
.+|++ ...+..++..+.+.|++++|+..|++++.. +|.... ++..+...+...|++++|++.|++.++
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677 788999999999999999999999999999 555433 234455568999999999999999886
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=48.68 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=53.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|.+..++..+...|...|++++|+..|++..+... .+..+|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567788888888888999999999988887542 35667888888899999999999888887653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=49.43 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=67.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-C----
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-N---- 397 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~---- 397 (723)
+...+..+...+...|++++|.+.|++.... .+.+...+..+..++...|++++|+..+++.+...... +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4556777888899999999999999998873 23466788889999999999999999999998764331 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMH 419 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~ 419 (723)
...+..+..++...|+.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHh
Confidence 3445555555555555444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0046 Score=52.17 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSL 404 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~l 404 (723)
.+.+.+++|.+.++....+ -+.+...|+.+..++...++ +++|+..|++.++..+. +..+|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 3445667777777777663 23456667767777776655 45888888888876544 66778888
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 405 INACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 405 i~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
..+|...| ++++|+..|++..+. .|+...|...+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88887764 789999999988876 6666666555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.032 Score=54.31 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=63.2
Q ss_pred chhhhhHHHHHHhh--ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcC---C--ChH------HHHHHh---hh
Q 004922 153 SGFKLLKNECQRLL--DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK---P--DVN------LAIRYA---CI 216 (723)
Q Consensus 153 ~~~~~l~~~~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~------~A~~~~---~~ 216 (723)
..+..++++...+. ......+|+.+|+++++.. |+....+..+..++... + ... .+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 46666666544432 2455689999999999866 77766666555444310 0 000 011100 11
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.|.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 13333444444444444455555555555544432 34444444444444455555555555444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.035 Score=56.40 Aligned_cols=96 Identities=8% Similarity=0.042 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHhc---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCCh
Q 004922 233 KKRDLVSALRAYDASKKH---LSS---PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~---~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 305 (723)
..|++++|+.++++..+. -.. |+ ..+++.|..+|...|++++|..++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 457899999999887652 122 22 4679999999999999999999998755
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
+++........+-...+++.|...|...|++++|..++++...+.
T Consensus 368 ----~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 368 ----KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp ----HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 345544433333345678899999999999999999999887743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.053 Score=55.17 Aligned_cols=103 Identities=11% Similarity=-0.076 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL---SSP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 299 (723)
.+..+.+.|++++|+.++++..+.. ..| ...+++.+..+|...|++++|+.++++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L---------------- 356 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM---------------- 356 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----------------
Confidence 3455667789999999988877532 122 24578888888988999999998887654
Q ss_pred hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
+++........+....+++.|...|...|++++|..++++...+..
T Consensus 357 ----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 357 ----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp ----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3444444333333456788899999999999999999998876443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.14 Score=49.81 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=94.5
Q ss_pred ChHHHHHHhhhCCCCcchHHHHHHHHH--hc---CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 206 DVNLAIRYACIVPRADILFCNFVREFG--KK---RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
...+..+.....|.+..+|...+.+.. .. .+..+|+.+|++..+. .|+ ...|..+..+|...
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------
Confidence 334445555666777788877665543 22 3457888899988874 353 45555544444300
Q ss_pred HHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc
Q 004922 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 280 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
...+.. +...... ...+.+....+ . ..+.++.+|..+...+...|++++|...++++.. +
T Consensus 247 ---~~~~~~-~~~~~~~--------l~~a~~a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------L 306 (372)
T 3ly7_A 247 ---HSQHPL-DEKQLAA--------LNTEIDNIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGID------L 306 (372)
T ss_dssp ---HHHSCC-CHHHHHH--------HHHHHHHHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------H
T ss_pred ---hccCCC-chhhHHH--------HHHHHHHHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------c
Confidence 000000 0000000 01111111111 1 1245667777776666677888888888888887 4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.|+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 307 n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 307 EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 467777778888888888888888888888876 34555553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.031 Score=42.55 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=53.8
Q ss_pred CCcchhhhHHHHHHHHhhcCC---hHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
+|++ ...+..++.++.-.++ .++|..++++++.. +|.....++.++.. +...|++++|+..|+++++.
T Consensus 2 ~p~~-~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~------~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVT-ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIAND------HFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCC-HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTC
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhh
Confidence 4555 6777777777754444 79999999999999 88876665555444 88999999999999999984
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.31 Score=41.64 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.|+++.|.++.+.+ ++...|..++......|+++.|++.|....+ +..+.-.|...|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 89999999988765 3566799999999999999999999998755 667777788888887777666665
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
...| -++.....+...|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5443 2344445566778898888888653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.16 Score=47.28 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHhhHHHH
Q 004922 88 EEFAMIVESVVVSEGNVSKFASMLSLEMV 116 (723)
Q Consensus 88 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 116 (723)
.-.+.+++.++.. +|.+-..+.....+
T Consensus 49 P~~Lk~~e~Ll~~--~P~~~~Ll~~~a~l 75 (301)
T 3u64_A 49 PLVLKVYEALHLQ--NPAHRGLSLAVGRL 75 (301)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 4456667777777 66655554444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.074 Score=40.85 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+...|++++|...|++..+.... +.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555555555555555544322 334 5555555555556666666666555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.21 Score=41.62 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (723)
...+++-|.+..+.+. ++..+...+.+++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666777666655 67888888899999988 6779999999998864 35 2445556667789999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 004922 604 SLFEEMKHYQIQPNL 618 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (723)
++++.+.+ ++|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 99999987 57853
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=1.6 Score=40.73 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-C
Q 004922 529 YYRVKALMNEMRTVGLSPN---HISWTILIDACGGS-----GNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRS-K 597 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~-g 597 (723)
...|..++++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 46778888888874 565 45788888888884 9999999999999984 56 377777888888884 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 004922 598 RLKQAFSLFEEMKHYQIQ--PNLVTYITLLR 626 (723)
Q Consensus 598 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~ 626 (723)
+.++|.+++++..+.... |+....+.+-+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 999999999999987766 77665555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.51 Score=52.90 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=88.8
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHH
Q 004922 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (723)
Q Consensus 232 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (723)
...+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.- ....-+....++++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHH
Confidence 34567777665 33111 11222356666667777777776655321 111222334567777776
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 311 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
+.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 65432 4677888899999999999999999887754 2334444555666666655555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
..|. ++.-..+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4431 233344455667777777766554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.52 Score=52.82 Aligned_cols=156 Identities=9% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHHHhhcCChHHHHH-HHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh
Q 004922 78 ASKLAKDGRLEEFAM-IVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~-~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 155 (723)
.......|++++|.. ++.. +. +.. +..++..+...|.+++|+++.+... ..+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~~~~~---------~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f 659 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VEGKDS---------LTKIARFLEGQEYYEEALNISPDQD------------QKF 659 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CCCHHH---------HHHHHHHHHHTTCHHHHHHHCCCHH------------HHH
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CCchHH---------HHHHHHHHHhCCChHHheecCCCcc------------hhe
Confidence 344456788888876 4411 11 111 1334445677888888876653111 122
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
...+. .|++++|.++.+. .++...|..++..+.+.++++.|++.|.++.+ +..+...|...|
T Consensus 660 ~~~l~-------~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----~~~l~~l~~~~~ 721 (814)
T 3mkq_A 660 ELALK-------VGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----LESLFLLHSSFN 721 (814)
T ss_dssp HHHHH-------HTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----HHHHHHHHHHTT
T ss_pred ehhhh-------cCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----hhhhHHHHHHcC
Confidence 22222 6999999887543 23456788888888888888888888877644 555666666667
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+.+...++-+.....|. ++....+|.+.|++++|++++.++.
T Consensus 722 ~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 76666655555544321 2333344566777777777776543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.15 Score=39.02 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
....+...|++++|...|+++... .+.+.. .+..+..+|...|++++|...|++.....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455677888899999988888763 233456 788888888888999999999988887643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.35 Score=36.62 Aligned_cols=68 Identities=7% Similarity=-0.124 Sum_probs=47.6
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 218 PRADILFCNFVREFGKKRD---LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|+++..+..+..++...++ .++|..+|++..+... -++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445566666666654443 6888888888777432 367777777788888888888888888887763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.25 Score=38.41 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRED------GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
+..-+-.|...+.+.|++..|...|++..+. +-.+....+..+..+|.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3444556778888889999999988887752 1123566788888888899999999999888876 46654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.63 E-value=1.5 Score=37.47 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 346777777766554 3677777777777777777777777776543 233333455566665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
...++-+.....|- ++....++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444444331 34444455566777777777644
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.95 Score=35.01 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
+..-+..+...+.+.|++..|...|+...+...... -.+....+..+..++.+.|+++.|..++++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 444455667777777777777777777665432210 1123455666666677777777777777766654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.73 Score=37.81 Aligned_cols=95 Identities=6% Similarity=-0.032 Sum_probs=54.2
Q ss_pred hhccCcc------chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhh---ccchHHHHHHHHHHHHhcCCCCccccc
Q 004922 123 SIREGRI------DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEMFVGLMEVLEEFRLPVKELDE 193 (723)
Q Consensus 123 ~~~~g~~------~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 193 (723)
+-..|++ ++..++|+++... +.|+. ......++..+..++ ..+++++|.++|+.++... .
T Consensus 23 lE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k---~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h--K----- 91 (161)
T 4h7y_A 23 LEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK---YGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC--K----- 91 (161)
T ss_dssp HHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG---GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC--T-----
T ss_pred HHHcCCCchhhHHHHHHHHHHHHHHc-CCccc---cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--H-----
Confidence 3444777 7888999998884 67764 234455555444432 3455566666665554321 0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (723)
.+ ..+|......=.++|++..|.+++......+..
T Consensus 92 ----------------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 ----------------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ----------------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ----------------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 00 233444455556667777777777776665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.53 E-value=1.7 Score=36.13 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=9.3
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~ 391 (723)
++.+.|++++|.+.++.+++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.39 E-value=4 Score=41.52 Aligned_cols=164 Identities=12% Similarity=0.153 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccH----
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKH--LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNI---- 291 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~~~---- 291 (723)
..|...|...|++.+|..++..+... |.-.. +..+...++.|...+++.+|..++..+.. ....|+.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44677777777888887777776532 11111 34566677777777888877777776532 2222321
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHc-CCCcChhhHHHHH----HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll----~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
..+...+....+++.+|-+.|.+.... ....|...+..++ ....-.+....-..+...... .. .-++...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~---~~-~~~~l~~~ 296 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN---DN-NLKKLESQ 296 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH---HS-SCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh---cc-cccccHHH
Confidence 223333344556777766666655432 1111222222111 111111111111122222221 11 23567778
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHC
Q 004922 367 STIVKVFADA--KWWQMALKVKEDMLSA 392 (723)
Q Consensus 367 ~~ll~~~~~~--g~~~~a~~~~~~m~~~ 392 (723)
..++.+|... .+++.....|......
T Consensus 297 ~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 297 ESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 8888888754 5788888888766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.12 E-value=2 Score=34.30 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG---ALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (723)
+..+++-|......|. |+..+--.+.+++.+..+... ++.+++++...+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455666666655554 677777778899999887666 999999988753 23 2233445567889999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 004922 604 SLFEEMKHYQIQPNL 618 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (723)
++++.+.+ ++|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 99999987 56753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.87 E-value=2.3 Score=34.06 Aligned_cols=83 Identities=7% Similarity=-0.050 Sum_probs=64.2
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
++.......+-.+.........-++.+..+|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444444556666678888999999999999999654 2457888999999999999999999999999999
Q ss_pred CCCc
Q 004922 285 QNVT 288 (723)
Q Consensus 285 ~g~~ 288 (723)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 9874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.00 E-value=2.3e-05 Score=77.37 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=129.8
Q ss_pred cCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
.....+.+..|+.++++.+..+++.+|+..|-+.. ++..|..++....+.|.+++-++.+....+.. .+...=+.|+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 33446677889999999999999999988876653 45778889999999999999998887776643 3344456888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh-hhc-CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 341 (723)
-+|++.++..+-.+.+. .||..-...+-. ++. |.++.|.-+|. +..-|..|...+.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHH
Confidence 99999998755433332 111111111110 000 11222221111 1122333334444455554
Q ss_pred HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
.|.+.-. -..++.||-.+-.+|...+.+.-|...=-.+.-. | .-...++..|...|.+++.+.++
T Consensus 188 ~AVdaAr----------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 188 AAVDGAR----------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SSTTTTT----------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHH----------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHH
Confidence 4443211 1235556666666677666665554433333211 1 11223455566677777766666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
+.-.... ....-+|+-|.-.|++- ++++-.
T Consensus 253 EaglglE-rAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 253 EAALGLE-RAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred HHHhCCC-chhHHHHHHHHHHHHhc-CHHHHH
Confidence 6555321 34555666665555543 344333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=2.9 Score=41.63 Aligned_cols=119 Identities=8% Similarity=-0.073 Sum_probs=76.5
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC--ccc--ccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV--KEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
+...|..++.........|+.+.|...+++++...--+ .+. ..|..-.+.. ++.. -..+...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~------------l~~~--~~~a~~~ 176 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATA------------LVED--KVLAHTA 176 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHH------------HHHH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH------------HHHH--HHHHHHH
Confidence 33444445544444444688889999998887653211 111 0111110000 0000 0134556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
++..+...|++++|+..+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999999998887643 24788999999999999999999999998764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=3.7 Score=40.92 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=59.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 439 (723)
...++..+...|+++++...+..+....+ .+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34566777889999999999999887653 3788999999999999999999999988765 4899988864443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.56 E-value=5.1 Score=30.15 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|.++|+-.+.. +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44455666666666666666666666666666666666666666655532 2333445555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.12 E-value=2.9 Score=35.07 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
|..+.+.+..-+..+...|.|+.|+.+.+.++... .+|+..........+.....++..+|+|..|...|+++++.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33346667777888899999999999998876663 23443233333445556677788999999999999887653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.44 E-value=40 Score=37.47 Aligned_cols=274 Identities=9% Similarity=-0.044 Sum_probs=134.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHHcCChHHHHHHHHHHHhhhh--cCCc-cccHHHHHHHHHHHHc
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEA--KGVL-KLDVFTYSTIVKVFAD 375 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~g~~-~~~~~~~~~ll~~~~~ 375 (723)
+.++.++++.+++.....+...+.. .-..+.-+....|..+++..++.....-.. .|.- .+....-..+.-+++-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 3456666666665544311011222 222233344555655566666555443110 0000 0111222233333333
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHhCCHH
Q 004922 376 AKW-WQMALKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC--VEACQFD 450 (723)
Q Consensus 376 ~g~-~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~ 450 (723)
.|. -+++.+.+..++...- +.. ..-.+|...+.-.|+.+....++..+... .+..+...+.-++ .-.|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 332 2455666666654321 111 11123334455667777777777776653 2333333344433 3567888
Q ss_pred HHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH--HHhh-
Q 004922 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCT- 527 (723)
Q Consensus 451 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~--~~~~- 527 (723)
.+..+++.+.... .|....-.++.. +|++
T Consensus 542 ~~~~li~~L~~~~------------------------------------------------dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 542 LADDLITKMLASD------------------------------------------------ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp GGHHHHHHHHHCS------------------------------------------------CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCC------------------------------------------------CHHHHHHHHHHHHHHhcCC
Confidence 8777777665421 222222222333 3443
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 004922 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSL 605 (723)
Q Consensus 528 -~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~ 605 (723)
+.....++++.+... ...+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|..+
T Consensus 574 Gn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 556666688877764 22233334444445555777777777777666543 44444444444555555554 678888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 606 FEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
+..+.. .+|..+-...+.++..-
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHH
Confidence 888864 35555544444444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.96 E-value=4.2 Score=32.41 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 361 LDVFTYSTIVKVFADAKWWQM---ALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++..+--.+..++++.....+ ++.+++.+...+ +.-.......+.-++.+.|++++|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 566666666667777665554 777777776653 1112334445666777788888888888777765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.88 E-value=9.4 Score=31.07 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHh
Q 004922 615 QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLC 684 (723)
Q Consensus 615 ~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~ 684 (723)
.|+..+--.+..++.++.+.+..++++.+++++.+.+..-.....-.|--++.| |+..+|.++.+.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555566666666666666666666666654432122222333334444 6666666666644443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.75 E-value=6.2 Score=29.72 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666666666677777777777777777777777777766553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.66 E-value=4.7 Score=43.67 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhcCC-hHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhhc------C
Q 004922 72 DYYADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL------G 143 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~------~ 143 (723)
..-..++..+...|+ ++.|+.+++++... +|..-... . ..++..+...+ +--+|+.++.+.++. .
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~--~---~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYY--K---TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHH--H---HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHH--H---HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 344556666666677 57899999999888 55432110 0 11111222222 223466666555431 1
Q ss_pred CCcccccc----cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC
Q 004922 144 VAPLELFD----GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (723)
Q Consensus 144 ~~p~~~~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (723)
..+..... +....+|.--+.=+.+.|+++.|+++-++.+... |..+.+|..|+..|...++++.|+-.++.+|.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 12211100 0001111111111233677777777777766644 66666666666666666666666666666653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.14 E-value=13 Score=30.59 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=27.7
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMS 580 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 580 (723)
++.++|.++|+.+.+.+-.- ...|-....--.+.|+++.|.+++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45566666666665432221 334444444444566666666666666655433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.68 E-value=0.028 Score=56.03 Aligned_cols=208 Identities=9% Similarity=0.021 Sum_probs=131.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+..|..|+.++.+.|++.+|+..|-++. +|+.|. .+|....+.|.+++-+..+..+.+..-.|. .
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~---------eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--I 118 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYM---------EVVQAANTSGNWEELVKYLQMARKKARESY--V 118 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSS---------HHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--T
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHH---------HHHHHHHhCCCHHHHHHHHHHHHHHhcccc--c
Confidence 6678889999999999999987654332 667664 345557899999999999887776543442 1
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC------------
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP------------ 218 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------ 218 (723)
+ +.|+-++++ .++..+-.+++ ..++..-...++.-|-..|.++.|.-+|..++
T Consensus 119 D----teLi~ayAk---~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 119 E----TELIFALAK---TNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp T----HHHHHHHHT---SCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred H----HHHHHHHHh---hCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2 234444444 45443332222 12233445667777888888888777766542
Q ss_pred -------------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 219 -------------RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 219 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+..+|-.+-.+|...+.+.-|.-.--.+.-. ++ -...++..|-..|.+++-+.+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 24577888888888888888777665555432 22 2334666777888888888888876532
Q ss_pred CCcccHHHHHHHHhhhcC-ChHHHHHHHHH
Q 004922 286 NVTLNIYVFNSLMNVNAH-DLKFTLEVYKN 314 (723)
Q Consensus 286 g~~~~~~~~~~ll~~~~~-~~~~a~~~~~~ 314 (723)
. ......|+-|--.+++ ++++..+.++.
T Consensus 259 E-rAHmGmFTELaILYsKY~PeKlmEHlkl 287 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKFKPQKMREHLEL 287 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSSCTTHHHHHHTT
T ss_pred C-chhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 2455666666556664 45544444433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.34 E-value=11 Score=43.73 Aligned_cols=217 Identities=11% Similarity=0.017 Sum_probs=127.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.....++..+...+.++.+..+..... .+......+..+|..+|++++|.+.|.+.-. |+..+....
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------- 879 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------- 879 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------
Confidence 334457777888899988877654432 3555556677889999999999999986532 221110000
Q ss_pred cCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccC
Q 004922 302 AHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAK 377 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g 377 (723)
.. ..-+..+..... ..-..-|..++..+.+.+.++.+.+.-....+....+ .++ ...|..+.+.+...|
T Consensus 880 -~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 -AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp -SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHC
T ss_pred -hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhC
Confidence 00 011112221110 1123446778888888898888888777665532111 122 235888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHH-c-CCCCCHHHHHHHHHHH
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE------------QAMHLFEEMLQ-A-GCEPNSQCCNILLQAC 443 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~------------~a~~~~~~~~~-~-~~~~~~~~~~~ll~~~ 443 (723)
++++|...+-.+..... -......++..+|..|..+ +..+++...-+ . .....+.-|..|-.-+
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~r 1030 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWR 1030 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhh
Confidence 99999999888876543 3566777777777766544 34444432221 1 1122223355555555
Q ss_pred HHhCCHHHH-HHHHHHhh
Q 004922 444 VEACQFDRA-FRLFRSWT 460 (723)
Q Consensus 444 ~~~g~~~~a-~~l~~~~~ 460 (723)
...|++.+| .-+|+.+.
T Consensus 1031 i~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1031 YKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHTTSCHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHHH
Confidence 666776655 45555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=41 Score=35.60 Aligned_cols=251 Identities=9% Similarity=-0.002 Sum_probs=142.0
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--
Q 004922 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-- 272 (723)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 272 (723)
..-...+.+.+++.....++...|.+...-+....+....|+-.+|......+-..|. .....+..++..+.+.|..
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 3445666678889888888777566667777788888899998888887777665543 2344677788877766644
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHhhh--------------cCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHH
Q 004922 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVN--------------AHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACC 335 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------------~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~ 335 (723)
+....=++.+...|- ...-..+.... .++...+...... ..++... +...+.-+.
T Consensus 155 ~~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 233333344444331 11111111111 1112222111111 1222221 112223333
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+ .+.+.|...+..... ...+.+... .+..+...+...+...++...+....... .+.......+....+.|+
T Consensus 227 r-~d~~~A~~~~~~~~~---~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQ---AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGD 300 (618)
T ss_dssp H-HCHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTC
T ss_pred h-cCHHHHHHHHHhhhh---ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCC
Confidence 3 377889999888764 222222221 23333334444553456666666655432 344444455555567799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+..|...|..|..... ....-.--+..++...|+.++|..+|+.+..
T Consensus 301 ~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999998865321 2344344556677888999999999988764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.78 E-value=8.7 Score=30.69 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 627 (723)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44556666666666777777777777777777777777777777766642 34445566666653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.53 E-value=7.7 Score=42.01 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHH-
Q 004922 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG---------SLHEVQQCLAVYQDMW- 648 (723)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------~~~~a~~a~~~~~~m~- 648 (723)
.+-+..-|..|.....+.+++++|.+.|+..... +-++..+..|+..|...+ +.+. ++...=++.
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~---il~~~ikl~~ 683 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDT---IISLLIKKIS 683 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHH---HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHH---HHHHHHHHHH
Confidence 4457778999999999999999999999998863 689999999999998876 5443 333333332
Q ss_pred ---HcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhh
Q 004922 649 ---KAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSA 708 (723)
Q Consensus 649 ---~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 708 (723)
+--..........|.+.+.+ |...---+ +. .....+.+.-.+.+.++.++.+-.
T Consensus 684 w~~RwY~efs~~l~~~l~kLi~~~G~~kirs~----I~--~~~~~~~~i~~l~~~~l~~~~~~~ 741 (754)
T 4gns_B 684 YDCRYYNYCQIFNLQLLEKLCNELGTHILRNK----IL--LQPSIGDEIMVMIDAMLAWIADLD 741 (754)
T ss_dssp HHHHTTBCCCHHHHHHHHHHHHHHCHHHHHHH----HH--TSTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhcccccCHHHHHHHHHHHHHhChHHhhHH----hh--ccccCCchHHHHHHHHHHHHHHhc
Confidence 21222344555544444444 42211111 11 112233455556688888877653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.91 E-value=45 Score=38.64 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
...++..+.+.+..+.+.++...+ +.++...-.+..+|...|++++|.+.|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 335666677777777776655433 445655556667888999999999999864
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.37 E-value=13 Score=27.91 Aligned_cols=84 Identities=8% Similarity=-0.085 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
...++|..+-+.+...+ + .-...+| ..+...|+|++|..+.+.+. .||...|-+|-....|-.+.+..-+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 35677777777766543 3 2233333 34678899999988877654 7899999988888888878777777
Q ss_pred HHHHHcCCCcChhhH
Q 004922 313 KNMQKLGVMADMASY 327 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~ 327 (723)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777766 3444444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.72 E-value=11 Score=30.07 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
|.-+..+-++.+....+.|++.+....+++|-+.+++..|.++|+.++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45556666667766777788888888888888888888888888766543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.44 E-value=15 Score=29.44 Aligned_cols=71 Identities=7% Similarity=0.033 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHh
Q 004922 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLC 684 (723)
Q Consensus 614 ~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~ 684 (723)
-.|+..|--.+..+++++.+.+...+++.++.++.+.+..-....+=.|--++.+ |+..+|.++.+.++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3456666666666666666666666666666666665521112233333334444 6666666666644433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.14 E-value=38 Score=32.09 Aligned_cols=26 Identities=19% Similarity=-0.077 Sum_probs=17.3
Q ss_pred ccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 190 ELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
++..+..++..+.+.+++.+|+.+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44556667777777777777776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=80.99 E-value=20 Score=28.84 Aligned_cols=138 Identities=12% Similarity=-0.037 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. -|. ..+++.......+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHH
Confidence 456666667766666552 34555555555444444444444444443221 000 0123333333333
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
-.+ ..+...+...++.+...|+-++-.+++..+.. ..+|+......+..+|.+.|+..++.+++.+.-+.
T Consensus 85 ~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 222 12344445555556666666665555555321 13455555555666666666666666666666555
Q ss_pred CC
Q 004922 393 GV 394 (723)
Q Consensus 393 ~~ 394 (723)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.48 E-value=16 Score=29.33 Aligned_cols=75 Identities=12% Similarity=-0.045 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 543 GLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 543 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
+-.|+..|--.+.+++.+..+ ..+++.+++++.+.+-.-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 344666666667778877765 457888898888754111244555666789999999999999999987 577643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.18 E-value=12 Score=27.96 Aligned_cols=84 Identities=10% Similarity=-0.084 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
...++|..+-+.+...+ + .-...+| ..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 35677777777766543 3 2233333 34678899999988776544 7899999998888888888888777
Q ss_pred HHHHHcCCCcChhhH
Q 004922 313 KNMQKLGVMADMASY 327 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~ 327 (723)
.++...| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777766 4444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.4 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.18 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.06 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.01 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.22 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.56 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.19 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.4e-18 Score=176.75 Aligned_cols=372 Identities=14% Similarity=0.107 Sum_probs=193.1
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
.+.|++++|++.++++++.. |++...+..++..+.+.|++++|+..++.+ |.+..++..++..|.+.|++++|+
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 34799999999999988755 655555555555555555555555554442 444445555555555555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH-HHHhhhcCChHHHHHHHHHHHHcCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN-SLMNVNAHDLKFTLEVYKNMQKLGV 320 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~a~~~~~~m~~~g~ 320 (723)
..+....+... .+...+..........+....+.................... .......+....+...+.......
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 55555544321 222223333333333333333333333332222111111111 111112233333333333333322
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
+.+...+..+...+...|++++|...+++.... .+-+...|..+...+...|++++|...+++....+.. +...
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 239 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHH
Confidence 222333444444444445555555544444431 1122334444444444455555555544444443222 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhh
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (723)
+..+...+.+.|++++|...|++..+.. +-+..++..+..++...|++++|
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A---------------------------- 290 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA---------------------------- 290 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH----------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH----------------------------
Confidence 4444444444455555555444444432 22333444444444444444444
Q ss_pred hhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
...++..... .+.+...+..+...+.+
T Consensus 291 ----------------------------------------------------~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 291 ----------------------------------------------------EDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp ----------------------------------------------------HHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred ----------------------------------------------------HHHHHhhhcc-CCccchhhhHHHHHHHH
Confidence 4444444433 23456677777888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004922 561 SGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGS 633 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 633 (723)
.|++++|+..|++..+. .|+ ...+..+..+|.+.|++++|.+.|++..+ +.| +...|..+..++.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888764 444 66778888888888888888888888876 456 46677777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.4e-17 Score=169.14 Aligned_cols=379 Identities=14% Similarity=0.064 Sum_probs=255.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhh
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 156 (723)
++..+.+.|++++|+..++++++. .|+....+ ..+...+.+.|++++|+..|+++++. .|+.. ..+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~------~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~---~a~~ 71 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVL------LLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH---HHHH
Confidence 456677789999999999999888 66544333 33444578899999999999998874 55432 2333
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHH
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG 232 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~ 232 (723)
.+..+ +...|++++|+..+....... +.....................+...... .+..............
T Consensus 72 ~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
T d1w3ba_ 72 NLGNV---YKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHH---HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHH---hhhhccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34433 334789999999988887755 33333333333333322222222222111 1222333333444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
..+....+...+....... +.+...+..+...+...|++++|...++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------- 193 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE-------------------------------- 193 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH--------------------------------
T ss_pred ccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHH--------------------------------
Confidence 4455555555554444321 1233444444455555555555555544
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
...... +-+...+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...|++..+.
T Consensus 194 -~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 194 -KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp -HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -HHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH-----hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443332 335667778888899999999999999988763 2345667888888999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcC
Q 004922 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472 (723)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~ 472 (723)
.+. +..+|..+...+...|++++|...++...... +.+...+..+...+.+.|++++|...|++..+.
T Consensus 267 ~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------- 334 (388)
T d1w3ba_ 267 QPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------- 334 (388)
T ss_dssp CSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS----------
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 543 67788899999999999999999999888764 667788888888999999999999888776532
Q ss_pred CCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552 (723)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~ 552 (723)
.| -+..++.
T Consensus 335 ---------------------------------------~p--------------------------------~~~~~~~ 343 (388)
T d1w3ba_ 335 ---------------------------------------FP--------------------------------EFAAAHS 343 (388)
T ss_dssp ---------------------------------------CT--------------------------------TCHHHHH
T ss_pred ---------------------------------------CC--------------------------------CCHHHHH
Confidence 11 1345677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKR 598 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 598 (723)
.+...|.+.|++++|...|++..+. .|+ ...|..+..+|.+.||
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7888889999999999999998874 564 6788888888888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-11 Score=121.01 Aligned_cols=251 Identities=15% Similarity=0.035 Sum_probs=159.7
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.+...|++++|+..|+++++.. |.....| ..++..|...|++++|...
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~------------------------------~~lg~~~~~~~~~~~A~~~ 75 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD--PKHMEAW------------------------------QYLGTTQAENEQELLAISA 75 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC--TTCHHHH------------------------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHH------------------------------HHHHHHHHHcCChHHHHHH
Confidence 3445789999999999888755 5554444 4445555555555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cH-------HHHHHH------Hh--hhcCChHH
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NI-------YVFNSL------MN--VNAHDLKF 307 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~-------~~~~~l------l~--~~~~~~~~ 307 (723)
|++..+..+ -+...|..+...|...|++++|.+.++......... .. .....+ +. ...+.+..
T Consensus 76 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 76 LRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred HHhhhcccc-ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence 555544221 234455555555555555555555555554331100 00 000000 00 00124556
Q ss_pred HHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 308 TLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 308 a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
+.+.|.+..... -..+...+..+...+...|++++|...|++.... .+-+...|..+...|...|++++|.+.|
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-----ccccccchhhhhhcccccccchhHHHHH
Confidence 777777766543 2345677888888999999999999999998763 2345678889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----------GCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
++.++..+. +..+|..+..+|.+.|++++|+..|++.++. ........|..+-.++...++.+.+.
T Consensus 230 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 230 RRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999876433 6778999999999999999999999988763 11222334555555665666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.3e-11 Score=119.19 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=181.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--h
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~ 301 (723)
....+..+.+.|++++|+..|+.+.+..+ -+..+|..+..+|...|++++|...|++..+... -+...|..+..+ .
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 44677788899999999999999998532 3688999999999999999999999999987632 234455554444 4
Q ss_pred cCChHHHHHHHHHHHHcCCCcChh----------------hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMA----------------SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~----------------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
.++++.|.+.++...... |+.. .....+..+...+.+.+|.+.|.+..... . ...+...
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--p-~~~~~~~ 174 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD--P-TSIDPDV 174 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS--T-TSCCHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh--h-ccccccc
Confidence 489999999999987653 2211 11122334445567788888888877631 1 2345677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+...+...|++++|...|++.....+. +..+|..+...|.+.|++++|.+.|++..+.. +-+..++..+..+|.+
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 888899999999999999999999876544 67889999999999999999999999998863 4467789999999999
Q ss_pred hCCHHHHHHHHHHhhhhh
Q 004922 446 ACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~~~ 463 (723)
.|++++|...|++.....
T Consensus 253 ~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 253 LGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=5.3e-09 Score=103.40 Aligned_cols=292 Identities=12% Similarity=0.001 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
.......+..+...|++++|+.+++++++.. |..... ....++..+...+...|++++|+..|+++.+. .+....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFY-SRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHhhcc
Confidence 5566667888899999999999999999883 432211 12334556677789999999999999998863 221111
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.......+......+...|++..|...+............. .. +.....+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~-------------~~-----------~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------------QL-----------PMHEFLVRIRAQL 142 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-------------TS-----------THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-------------hh-----------hHHHHHHHHHHHH
Confidence 11233333444444555788888888887765421000000 00 0001334556677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcccH--HHHHHH--H
Q 004922 231 FGKKRDLVSALRAYDASKKHLS----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLNI--YVFNSL--M 298 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~--~~~~~l--l 298 (723)
+...|+++.+...+........ ......+..+...+...+++.++...+.+.... +..+.. ..+..+ +
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 7788888888888877665322 123455666667777888888888777765442 111111 111111 1
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHH
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA 374 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~ 374 (723)
....++++.|...+.......... ....+..+...+...|++++|...++.+..........|+ ...+..+...|.
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 123367777777777665432221 2334555677888888888888888887654333223333 345677777788
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004922 375 DAKWWQMALKVKEDMLS 391 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (723)
+.|++++|.+.+++.+.
T Consensus 303 ~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5e-09 Score=100.98 Aligned_cols=202 Identities=8% Similarity=-0.016 Sum_probs=130.0
Q ss_pred ccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHh
Q 004922 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLN 140 (723)
Q Consensus 62 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~ 140 (723)
.|..+|+. ..++..+...+.+.+++++|+.++++++.. +|..++.+...+.+ +...| ++++|+..++.++
T Consensus 35 ~I~~~p~~-~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~------l~~l~~~~~eal~~~~~al 105 (315)
T d2h6fa1 35 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVL------LKSLQKDLHEEMNYITAII 105 (315)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHTTCCHHHHHHHHHHHH
T ss_pred ccccCHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHH------HHHhCcCHHHHHHHHHHHH
Confidence 56677887 889999999999999999999999999999 88876654443332 55555 5899999999998
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (723)
+ +.|+.. ..+..... .+...|++++|+..++++++.. |.+...|..++..+...+++++|+..++.+
T Consensus 106 ~--~~p~~~---~a~~~~~~---~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 106 E--EQPKNY---QVWHHRRV---LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp H--HCTTCH---HHHHHHHH---HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HHHhhh---hHHHHHhH---HHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7 455433 23333333 3334789999999999988865 666666666666666666666666665553
Q ss_pred -CCCcchHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 218 -PRADILFCNFVREFGKKRD------LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
|.+..+|+.+...+.+.+. +++|+..+....+..+ .+...|+.+...+... ..+++.+.++...+
T Consensus 176 ~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 176 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 4555556555555444443 4555555555554321 2455555554444332 23445555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=8.3e-07 Score=87.00 Aligned_cols=305 Identities=12% Similarity=-0.007 Sum_probs=192.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 302 (723)
....+...|++++|++.+++..+.....+ ..++..+..+|...|++++|+..|++..+..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~---------------- 81 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA---------------- 81 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------
Confidence 46677889999999999999877532222 3467778888999999999999998776421
Q ss_pred CChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc--c-cHHHHHHHHHHHHccCC
Q 004922 303 HDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--L-DVFTYSTIVKVFADAKW 378 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~--~-~~~~~~~ll~~~~~~g~ 378 (723)
...+. ......+..+...+...|++..+...+............. + ....+..+...+...|+
T Consensus 82 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 82 -------------RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp -------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred -------------HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc
Confidence 00000 0112344556667788889998888888776543322111 1 12345666777888999
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHhCC
Q 004922 379 WQMALKVKEDMLSAGV----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPN----SQCCNILLQACVEACQ 448 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~ll~~~~~~g~ 448 (723)
++.+...+........ .....++..+...+...++...+...+.+.... ..... ...+......+...|+
T Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 9999999888875422 223445666667778888888888888766542 11111 2234555566777888
Q ss_pred HHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhc
Q 004922 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528 (723)
Q Consensus 449 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 528 (723)
++.|...++....... .
T Consensus 229 ~~~a~~~~~~~~~~~~-------------------------------------------------~-------------- 245 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEF-------------------------------------------------A-------------- 245 (366)
T ss_dssp HHHHHHHHHHSCCCCC-------------------------------------------------T--------------
T ss_pred HHHHHHHHHHHHHhcc-------------------------------------------------c--------------
Confidence 8888887766443210 0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE----DGMSPD-VVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~ 603 (723)
........+..+...+...|++++|...+++... .+..|+ ...+..+..+|...|++++|.
T Consensus 246 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 246 --------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp --------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0011233455567778888888888888887763 344443 346677778888889999998
Q ss_pred HHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCChHHH
Q 004922 604 SLFEEMKH----YQIQ----PNLVTYITLLRARSRYGSLHEV 637 (723)
Q Consensus 604 ~~~~~m~~----~g~~----p~~~~~~~ll~~~~~~g~~~~a 637 (723)
+.+++..+ .|.. -....+..++..+...++.+++
T Consensus 312 ~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~ 353 (366)
T d1hz4a_ 312 RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353 (366)
T ss_dssp HHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 88887653 2221 1122344444555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=6.2e-07 Score=85.96 Aligned_cols=132 Identities=8% Similarity=0.008 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
...++.+...+.+.+.+++|+++++++..+ -+-+...|+....++...| ++++|+..++..+...+. +..+|.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l-----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~ 116 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWH 116 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 345666667778888899999999999883 2334456788887877766 489999999998877655 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+...+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|.+.++.+...
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88889999999999999999988864 557888888888899999999998888887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=5.3e-07 Score=86.38 Aligned_cols=187 Identities=9% Similarity=0.024 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
+..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888887654444566777777888888888888888888877543333456777788888888888888888
Q ss_pred HHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHHH
Q 004922 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKAL 535 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~l 535 (723)
+....... ..+......+.+...+ ++.+.|..+
T Consensus 158 ~~al~~~~----------------------------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 158 KKAREDAR----------------------------------------------TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HHHHTSTT----------------------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHhCC----------------------------------------------CcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77654321 1222222222222222 355666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG-MSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 536 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
|+.+.+. .+.+...|...+..+.+.|+++.|..+|++..... ..|+ ...|...+.--...|+.+.+.++++++.
T Consensus 192 ~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 192 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666554 22244556666666666666666666666655532 2222 3455555555555566666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2.3e-08 Score=93.58 Aligned_cols=117 Identities=12% Similarity=-0.046 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHhcCC--CCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
.++.+.|+..+++++.... .+.....+..++..+.+.|++++|+..|++. |.+..+|+.++..|.+.|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 4566777777777775432 1234455666777777888888887777663 667777777888888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..|+++.+..+ -+..++..+..+|...|++++|...|+...+.
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888776432 24556777777777788888888888777665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=5.8e-07 Score=86.09 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~ 312 (723)
+..++|..+|++..+...+.+...|...+..+...|++++|..+|+.+.+.........|...+.... ++.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577788888877654444566777777777788888888888887776432222223333333221 3444444444
Q ss_pred HHHHHcCCCcChhhHHHHHHH-HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 313 KNMQKLGVMADMASYNILLKA-CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
+...+.+ +.+...|...... +...|+.+.|..+|+.+... .+.+...|...+..+.+.|+++.|..+|++...
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444332 1122222222111 11234444444444444431 122333444444444444444444444444443
Q ss_pred CC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 392 AG-VTPN--TITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 392 ~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
.. ..|+ ...|...+..-...|+.+.+..+++++
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 1111 223444444334444444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=7.8e-08 Score=89.88 Aligned_cols=156 Identities=6% Similarity=-0.138 Sum_probs=111.9
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+...++.+.|+..+++++...... ... .-..+......+.+.|++++|+..|++.+... |+.+..+..++.++.
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~-~~~---~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~ 82 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALT-DDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 82 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC-HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcC-CHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHH
Confidence 344556667777777777532111 111 11223333334555899999999999999866 899999999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..|++++|+..|+.+ |.+..++..++..|...|++++|...|+...+..+ .+......+...+.+.+..+.+..+
T Consensus 83 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
T d1xnfa_ 83 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVL 161 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999998885 77788999999999999999999999999987542 3444444444455555665555555
Q ss_pred HHHHHhC
Q 004922 279 YEDLRSQ 285 (723)
Q Consensus 279 ~~~m~~~ 285 (723)
.......
T Consensus 162 ~~~~~~~ 168 (259)
T d1xnfa_ 162 KQHFEKS 168 (259)
T ss_dssp HHHHHHS
T ss_pred HHHhhcc
Confidence 5555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=5.9e-08 Score=94.63 Aligned_cols=250 Identities=8% Similarity=-0.062 Sum_probs=156.1
Q ss_pred ccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHh-------hccchHHHHHHHHHHHHhcCCCCcccccHHHH
Q 004922 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL-------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (723)
Q Consensus 125 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (723)
..+..++|+++++++++ ..|+... .++.....+..+ ...|++++|+.+++.+++.. |.+...|..+
T Consensus 41 ~~~~~~~al~~~~~~l~--~~P~~~~---a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~ 113 (334)
T d1dcea1 41 AGELDESVLELTSQILG--ANPDFAT---LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHR 113 (334)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHH--HCCCcHH---HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHh
Confidence 44445899999999997 5676532 222211111111 22567899999999998866 8888888888
Q ss_pred HHHHhcCCC--hHHHHHHhhhC----CCCcchHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004922 198 VQLCVNKPD--VNLAIRYACIV----PRADILFC-NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (723)
Q Consensus 198 ~~~~~~~~~--~~~A~~~~~~~----~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (723)
+.++...+. +++|...+..+ |++...+. .....+...+.+++|+..++.+.+..+ -+..+|+.+..++.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 877776654 67777776663 55555544 345677778888888888888877532 36778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCcccH-HHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHH
Q 004922 271 DYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (723)
Q Consensus 271 ~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 349 (723)
++++|...+....+. .|+. ..+... ...+..+.+...+....... +++...+..+...+...++.++|...+.+
T Consensus 193 ~~~~A~~~~~~~~~~--~~~~~~~~~~~--~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 193 PQPDSGPQGRLPENV--LLKELELVQNA--FFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCCSSSCCSSCHHH--HHHHHHHHHHH--HHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh--HHHHHHHHHHH--HHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 887766555443332 1111 111111 11234445555566555543 34455555566666667777777777766
Q ss_pred HHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 350 ~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
.... .+.+...+..+...+...|++++|.+.|++..+.
T Consensus 268 ~~~~-----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 268 LEPE-----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HCTT-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhh-----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6541 1223445666677777777777777777777665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=6.2e-08 Score=94.49 Aligned_cols=278 Identities=6% Similarity=-0.086 Sum_probs=183.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHH----HHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...++......+..++|+.++++++.. +|+.++.+...+ .+......+...|++++|+..++.+++. .|+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY 107 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcH
Confidence 344444444444558999999999998 777655432221 1223333455677899999999999984 55433
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccH-HHHHHHHhcCCChHHHHHHhhhC----CCCcchH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE-FRIVQLCVNKPDVNLAIRYACIV----PRADILF 224 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~ 224 (723)
..+..+..+. .....+++++|+..++++++.. |.....+ ...+..+...+.++.|+..++.+ |.+..+|
T Consensus 108 ---~~~~~~~~~~-~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~ 181 (334)
T d1dcea1 108 ---GTWHHRCWLL-SRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (334)
T ss_dssp ---HHHHHHHHHH-HTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred ---HHHHHhhHHH-HHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence 1222222222 2223456899999999998865 6555555 45667888899999999988775 6677899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH--Hhhhc
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNA 302 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--l~~~~ 302 (723)
+.+...+.+.|++++|...+...... .|+ ...+...+...+..+++...+......... +...+..+ +....
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHH
Confidence 99999999999999887666554431 111 122333455667777888888877665321 12222222 22233
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA 374 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~ 374 (723)
++...+...+.+..... +.+...+..+...+...|++++|.+.|+++.+ +.|+ ...|..+...+.
T Consensus 256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~------ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA------VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH------HCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HCcccHHHHHHHHHHHh
Confidence 67778888888877654 33567778888999999999999999999988 4564 345565655444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=2.5e-06 Score=80.65 Aligned_cols=183 Identities=11% Similarity=-0.035 Sum_probs=119.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
....|...+..|...|++++|...|.++.+... ++.. ....+.++...|.+.|++++|++.+++..+. .+
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~-----~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--~~ 108 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--hh
Confidence 467899999999999999999999999988632 2221 2455667778899999999999999988763 22
Q ss_pred ccccccchhhhhHHHHHHh-hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 147 LELFDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
...........+......+ ...|++++|+..+++..+.. ...++... ...++.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~----------------~~~~~~~~----------~~~~~~ 162 (290)
T d1qqea_ 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY----------------AQDQSVAL----------SNKCFI 162 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------------HHTTCHHH----------HHHHHH
T ss_pred hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----------------HhcCchhh----------hhhHHH
Confidence 1111111222233322222 22588888888887765321 01111111 014577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSP-----NM-YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.++..|...|++++|...|+++....... .. ..+...+..+...|++..|...+++..+.
T Consensus 163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78888899999999999998877643211 11 22344555667788899998888888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=1.6e-05 Score=74.98 Aligned_cols=209 Identities=10% Similarity=-0.024 Sum_probs=130.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
.|......|...|++++|...|.+..+. +-.+ -..+|+.+..+|.+.|++++|.+.++...+.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------ 106 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------ 106 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH------------
Confidence 3555677788888888888888877552 1112 2357888899999999999999988876532
Q ss_pred HhhhcCChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHH-cCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHH
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCL-AGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFA 374 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~ 374 (723)
+... |. .....++..+...|.. .|++++|.+.|.+...+......++ -..++..+...+.
T Consensus 107 --------------~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 107 --------------FTHR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp --------------HHHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------hhhc---ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 1111 10 1112334445555544 5888888888888766433221112 1345777888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHH
Q 004922 375 DAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PN---SQCCNILLQACV 444 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~ll~~~~ 444 (723)
..|++++|...|++.......... ..+...+..+...|+++.|...+++..+.... ++ ......++.++.
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 899999999999888765322111 12344555667788899998888887654211 11 234455666665
Q ss_pred H--hCCHHHHHHHHHHhh
Q 004922 445 E--ACQFDRAFRLFRSWT 460 (723)
Q Consensus 445 ~--~g~~~~a~~l~~~~~ 460 (723)
. .+.+++|+..|+++.
T Consensus 250 ~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTCTTTHHHHHHHHTTSS
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 4 234677777775543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=8.8e-06 Score=64.36 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=56.1
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (723)
+...|++++|+..|+++++.. |.+ ..+|..+..+|...|++++|+..+
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~--p~~------------------------------~~~~~~~a~~~~~~~~~~~A~~~~ 60 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD--PHN------------------------------HVLYSNRSAAYAKKGDYQKAYEDG 60 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--Ccc------------------------------hhhhhcccccccccccccccchhh
Confidence 334788888888888887755 444 455555566666666666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
....+.+. .+...|..+..++...|++++|+..|+...+.
T Consensus 61 ~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 61 CKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHhcc-chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66665432 35556666666666666666666666666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.6e-05 Score=65.75 Aligned_cols=128 Identities=17% Similarity=0.072 Sum_probs=67.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (723)
...+...|+++.|++.|..+. +|+..+|..+..+|...|++++|++.|++.++..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------------------- 66 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------------- 66 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---------------------
Confidence 444555666666666665432 2455566666666666666666666666655431
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC----------cccc-HHHHHHHHHHHHcc
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLD-VFTYSTIVKVFADA 376 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~----------~~~~-~~~~~~ll~~~~~~ 376 (723)
+.+...|..+..+|.+.|++++|.+.|++.....+... ..++ ..++..+..++.+.
T Consensus 67 -------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~ 133 (192)
T d1hh8a_ 67 -------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133 (192)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred -------------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence 23445555555666666666666666665543110000 0001 12334445555566
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004922 377 KWWQMALKVKEDMLSAG 393 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~ 393 (723)
|++++|.+.+.......
T Consensus 134 ~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 134 EEWKKAEEQLALATSMK 150 (192)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 66666666666555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4.5e-05 Score=66.35 Aligned_cols=118 Identities=10% Similarity=-0.031 Sum_probs=90.0
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
.++++.|++.|.++ .+|++.+|..+..+|...|++++|.+.|++..++ -+.+...|..+..+|.+.|++++
T Consensus 18 ~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp TTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-----hhhhhhhHHHHHHHHHhhccHHH
Confidence 35666666666543 2567778888999999999999999999999874 24456788889999999999999
Q ss_pred HHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 382 ALKVKEDMLSAGVT--------------PN-TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 382 a~~~~~~m~~~~~~--------------p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
|.+.|++.+..... ++ ..++..+..++.+.|++++|.+.+....+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999988753111 01 2456677778889999999999988877653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7.8e-05 Score=62.57 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (723)
....+.|.+.|++++|...|.++.++ .+.+...|..+..+|...|++++|...|++.++..+. +..+|..+..+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~ 87 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc-----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 34456788999999999999999984 3456778999999999999999999999999987644 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHHHHHHH
Q 004922 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRL 455 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~l 455 (723)
+...|++++|...+++..... +-+...+..+..+ ..+.+.++++...
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998864 3344444444333 2233344455443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=8e-05 Score=58.58 Aligned_cols=92 Identities=20% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
-.+.+.+.|++++|...|.+.... -+.+...|..+..+|...|++++|+..+......++. +...|..+..++.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHH
Confidence 456677889999999999988773 3456667888888899999999999999998887654 7788888888999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 004922 410 NAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~ 427 (723)
..|++++|+..|++..+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 999999999999888875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.5e-05 Score=67.26 Aligned_cols=83 Identities=11% Similarity=-0.051 Sum_probs=55.3
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
.+.|++++|+..|+++++.. |++...|..++..+...|++++|...|+++ |.+..+|..++.+|...|++++|.
T Consensus 21 ~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 21 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence 34799999999999888765 666666666666666666666666665543 445556666666666666666666
Q ss_pred HHHHHHHhc
Q 004922 242 RAYDASKKH 250 (723)
Q Consensus 242 ~~~~~~~~~ 250 (723)
..|++....
T Consensus 99 ~~~~~a~~~ 107 (159)
T d1a17a_ 99 RDYETVVKV 107 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=4.5e-05 Score=67.16 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=67.1
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
|+...+....+.|.+.|++++|...|.+...+ .+.+...|..+..+|.+.|++++|+..|++.++..+. +..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHH
Confidence 45555666667777777777777777776653 2345556777777777777777777777777665332 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
..+..+|.+.|++++|+..|++..+
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777776654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.0032 Score=57.49 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 363 VFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 363 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
...+..+...|.. ..+...+...++...+.| +......+...|.. ..+++.|..+|....+.| ++.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~ 215 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 215 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence 3344444444443 334445555555544433 33333344433333 345555666665555544 333
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHhhhhhc
Q 004922 435 CCNILLQACVE----ACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 435 ~~~~ll~~~~~----~g~~~~a~~l~~~~~~~~~ 464 (723)
.+..|...|.+ ..+.++|.+.|++....+.
T Consensus 216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 44444444433 2245556666655554444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.96 E-value=0.0065 Score=55.37 Aligned_cols=222 Identities=14% Similarity=0.035 Sum_probs=159.7
Q ss_pred cccHHHHHHHHhcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004922 191 LDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (723)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 264 (723)
+..+..++..+.+.+++.+|+++|++. ..+..++..|...|.. ..++..|...+......+ +......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 345777888899999999999999987 4566778888888886 678999999999988754 4445555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 004922 265 VCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (723)
Q Consensus 265 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 336 (723)
.+.. ..+.+.|...++...+.|........ ...... ......+...+...... .+...+..|...+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhcc
Confidence 5443 46789999999999888753332222 222222 13566777777777664 466777778888876
Q ss_pred ----cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 337 ----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 337 ----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
..+...+...++...+ . .+......+...|.. ..++++|...|.+..+.| +...+..|...|
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~---~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD---L----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccc---c----cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 3566777777777664 2 356666666656654 568999999999999876 556777777777
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCC
Q 004922 409 AN----AGLVEQAMHLFEEMLQAGC 429 (723)
Q Consensus 409 ~~----~g~~~~a~~~~~~~~~~~~ 429 (723)
.+ ..+.++|.++|++..+.|.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 65 3478899999999887763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.5e-06 Score=86.26 Aligned_cols=217 Identities=8% Similarity=-0.053 Sum_probs=115.8
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+++..+|+. ..++..+...+...|++++| |++++.. +|........... +. ...+..+++.++.
T Consensus 9 ~~qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-------Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 9 LRQAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-------LW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-------HH-HHHTHHHHHHHHH
T ss_pred HHHHHHcCCCC-HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHH-------HH-HHHHHHHHHHHHH
Confidence 44556777777 67777788888888998876 7888877 6653221111111 11 1235667777777
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
..+....++.. .....+.. +. ....+.++.|+..+....+ ..|+....+..++..+.+.++.+.|...+...
T Consensus 75 ~~k~~~~~~~~---~~~~~~~~-~l-~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 75 QAKNRANPNRS---EVQANLSL-FL-EAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHSCSSCTTTT---HHHHHHHH-HH-HHHHHHHHHHHHHHTC---------------------------------CCHHH
T ss_pred hcccccCccHH---HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 77643333222 11111111 00 0114666777666655443 34677777888888888888888888776553
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
+....++..++..+...|++++|...|.+..+.. +.+...|+.+...+...|+..+|+..|.+..... .|-...+..
T Consensus 148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n 225 (497)
T d1ya0a1 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 2223567778888999999999999999988742 2356789999999999999999999888887653 233444444
Q ss_pred HH
Q 004922 297 LM 298 (723)
Q Consensus 297 ll 298 (723)
|.
T Consensus 226 L~ 227 (497)
T d1ya0a1 226 LQ 227 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.91 E-value=3e-05 Score=60.58 Aligned_cols=64 Identities=6% Similarity=-0.058 Sum_probs=46.2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
|.+..+|..+...+.+.|++++|+..|+...+..+ .+..+|..+...|...|++++|++.|++.
T Consensus 47 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 47 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44556677777777777888888888877776421 35677777777888888888888877764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=8.4e-05 Score=65.28 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
|+...+......|.+.|++++|+..|.+.+...+. +...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 56666777788999999999999999999987644 78899999999999999999999999998753 34677899999
Q ss_pred HHHHHhCCHHHHHHHHHHhhhhh
Q 004922 441 QACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 441 ~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.+|.+.|++++|...|+......
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999876543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.83 E-value=0.00011 Score=57.22 Aligned_cols=85 Identities=12% Similarity=-0.002 Sum_probs=40.1
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (723)
.+.+.|++++|+..|++.+...+. +..+|..+..++.+.|++++|+..|++..+.. +.+...+..+...|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 344445555555555554443322 34444444555555555555555555444432 2234444444445555555555
Q ss_pred HHHHHHH
Q 004922 452 AFRLFRS 458 (723)
Q Consensus 452 a~~l~~~ 458 (723)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00015 Score=61.71 Aligned_cols=136 Identities=7% Similarity=-0.025 Sum_probs=93.6
Q ss_pred cccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-CCCcchH
Q 004922 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILF 224 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~ 224 (723)
|+...+...|..+.+....+...|++++|...|.+.+... +....... ..+.+. ......+ +....++
T Consensus 2 ~~~~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~~-------~~~~w~--~~~r~~l~~~~~~a~ 70 (179)
T d2ff4a2 2 PDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDDL-------RDFQFV--EPFATALVEDKVLAH 70 (179)
T ss_dssp CGGGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGGG-------TTSTTH--HHHHHHHHHHHHHHH
T ss_pred CchhccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccccccC-------cchHHH--HHHHHHHHHHHHHHH
Confidence 3444455667777777777778999999999999998753 21111000 000110 0000000 1112567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHHH
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 293 (723)
..++..+...|++++|+..++.+.+... -+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 7899999999999999999999988532 4788999999999999999999999999754 467666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00013 Score=57.60 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPN-TITWSS 403 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ 403 (723)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.+ ++++|+.+|+++...+..|+ ..+|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 46788888999999999999998873 2456678888888888755 45569999999887655444 247788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (723)
+..+|.+.|++++|.+.|+++.+. .|+.
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 899999999999999999999886 4543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.0005 Score=58.42 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASK-----KHLSSPNMYI 258 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~ 258 (723)
|.+..+|..++.+|.+.|+..+|++.|+++. +.|+.|+..+
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 5556778888888888888888888888863 3578887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00012 Score=57.83 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=69.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhc---cCccchHHHHHHHHhhcCCCcccccc
Q 004922 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR---EGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+++.+...+++++|+..|++++.. +|...... .++...+.+ .+++++|+.+|+++++.+..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~------~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~---- 70 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQ------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE---- 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHH------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHH------HHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch----
Confidence 46778888899999999999999998 55543332 334444555 4455679999999887433331
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccccc
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 193 (723)
....+......+.+.|++++|+..|+++++.. |++...
T Consensus 71 --~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--P~~~~A 108 (122)
T d1nzna_ 71 --QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNNQA 108 (122)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred --HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--cCCHHH
Confidence 22233344444555899999999999998865 665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=6.7e-05 Score=76.49 Aligned_cols=115 Identities=9% Similarity=-0.093 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+.+.|+.+.|...+...... . ...++..+...+...|++++|...|++..+..+. +...|+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~ 190 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY------I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYN 190 (497)
T ss_dssp ------------------------CCHHHHH------H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHH
Confidence 4555666666777777777777776665441 1 1245666777777788888888888887776433 556788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (723)
.+...+...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus 191 ~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 191 QLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 88888888888888888888777664 56666777776666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0015 Score=54.89 Aligned_cols=117 Identities=14% Similarity=-0.019 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc-c---------ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-K---------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~-~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (723)
+....+.+.+.|++++|...|.+.......... . .-..+|+.+..+|.+.|++++|+..++..+...+.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 344556777888888888888877663211100 0 11245777888899999999999999999987644
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+|..+..+|...|++++|...|++..+.. +-+..+...+-.+..+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR 142 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999998863 2355555555444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00088 Score=53.29 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-----HHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN-----TIT 400 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~ 400 (723)
+..+.+.+.+.|++++|...|.+...+ .+.+...+..+..+|.+.|++++|+..++++++.... +. ..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445667888889999999999988874 2345778888888999999999999999888764211 11 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (723)
|..+...+...+++++|+..|...... .++....
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 677778888888999999998887664 3444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00028 Score=56.32 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=73.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+..+...+...|++++|+..|++++.. +|.... ++.++...|.+.|++++|++.++++++ +.|+....
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~ 74 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMT------YITNQAAVYFEKGDYNKCRELCEKAIE--VGRENRED 74 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHH------HHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHH
Confidence 34567888899999999999999999999 666433 345566669999999999999999987 44433211
Q ss_pred cc-hhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 152 GS-GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 152 ~~-~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
.. .-.++......+...+++++|+..|++.+...
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 11 11123333333444789999999998877544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.47 E-value=0.0017 Score=53.46 Aligned_cols=108 Identities=13% Similarity=0.003 Sum_probs=76.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc-----------ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-----------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.-.+.+.+.|++.+|...|.+........... ....+|+.+..+|.+.|++++|+..++..+..++. +
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~ 100 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-N 100 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch-h
Confidence 34456667778888887777766532111111 12346777888899999999999999999887543 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
..+|..+..++...|++++|+..|++..+.. +-+..+...
T Consensus 101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~ 140 (153)
T d2fbna1 101 VKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8899999999999999999999999988863 224444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.044 Score=50.96 Aligned_cols=48 Identities=2% Similarity=-0.007 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (723)
-++..+-+.+++.-...+++...+.| +....+++...|...++++.-.
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 34556666777777777777766544 3467788888888888865533
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.0054 Score=51.36 Aligned_cols=127 Identities=13% Similarity=-0.056 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 336 (723)
..+......+.+.|++++|+..|.+..+.-. ...+....-......+ ...+|+.+..+|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~------------~~~~~~~~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLE------------YESSFSNEEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT------------TCCCCCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------hccccchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence 3455666778889999999999988765310 0001011111111111 12357778889999
Q ss_pred cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 337 ~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.|++++|...++....+ -+.+...|..+..+|...|++++|...|++.++..+. +......+-...
T Consensus 75 ~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 75 LQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhc-----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999999984 2347778999999999999999999999999986543 555544444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.0029 Score=53.10 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=82.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcC----------Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKG----------VL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g----------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.....+...|++++|.+.|.++....... .. +.+...|..+..++.+.|++++|+..+.+.++..+. +
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-h
Confidence 34555667778888877777664321100 01 123446777888899999999999999999987654 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
..+|..+..++...|++++|+..|++..+.. +.+..+...+..+.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8899999999999999999999999999863 33555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.34 E-value=0.004 Score=51.10 Aligned_cols=96 Identities=10% Similarity=-0.078 Sum_probs=78.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV----TPN-----------TITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 430 (723)
+......+.+.|++.+|+..|.+.+..-. .++ ..+|+.+..+|.+.|++++|++.+...++.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 44445668899999999999999886321 111 2367788999999999999999999998875 5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+..+|..+..++...|++++|...|+.....
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.26 E-value=0.01 Score=49.46 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-----------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
.+.-....+.+.|++.+|...|.......... ... ....|+.+..+|.+.|++++|+..++..+...+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME-YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34456677888889999988888876532111 111 123466677889999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHhh
Q 004922 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD-RAFRLFRSWT 460 (723)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~l~~~~~ 460 (723)
. +..+|..+..++...|++++|...|.++.+.. +.+..+...+-.+..+.+... ....+|..|-
T Consensus 96 ~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 96 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 78899999999999999999999999999863 345555555444444443332 3344444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.0033 Score=52.71 Aligned_cols=125 Identities=8% Similarity=-0.083 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC
Q 004922 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (723)
Q Consensus 260 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 339 (723)
......+.+.|++++|+..|.+..+.. +. .... ...... ... -+.+...+..+..++.+.|+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~--~~-------~~~~-~~~~~~-------~~~-~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV--EG-------SRAA-AEDADG-------AKL-QPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-------HHHH-SCHHHH-------GGG-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh--hh-------hhhh-hhhHHH-------HHh-ChhhHHHHHHHHHHHHhhcc
Confidence 344555677888888888887765320 00 0000 000000 000 02245567778889999999
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
+++|+..+..+.++ -+.+...|..+..+|...|++++|+..|++.++..+. +......+..+.
T Consensus 93 ~~~Ai~~~~~al~~-----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 93 WQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhh-----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999874 2446678999999999999999999999999987543 555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.21 E-value=0.028 Score=46.60 Aligned_cols=130 Identities=12% Similarity=-0.027 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 336 (723)
..+......+.+.|++.+|+..|+..... +................+ ....|+.+..+|.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~------------~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW------------LEMEYGLSEKESKASESF-------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhhccchhhhhhcchh-------HHHHHHhHHHHHHH
Confidence 34556677788899999999998876542 000111001111111111 13356678888999
Q ss_pred cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 337 ~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
.|++++|+..++.+..+ .+.+...|..+..+|...|++++|...|.+.+...+. +......+-....+.
T Consensus 77 l~~~~~Ai~~~~~al~l-----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 77 LREYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKA 145 (168)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhc-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 99999999999999885 3457778999999999999999999999999987533 555555444443333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.19 E-value=0.088 Score=48.82 Aligned_cols=273 Identities=10% Similarity=0.036 Sum_probs=150.5
Q ss_pred HHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
++..+.+.|.++.|..+|..+.. +.-++. .+...+++..|.+++.+. .....|..+.
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d-------------~~rl~~---~~v~l~~~~~avd~~~k~-------~~~~~~k~~~ 76 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSN-------------FGRLAS---TLVHLGEYQAAVDGARKA-------NSTRTWKEVC 76 (336)
T ss_dssp ---------CTTTHHHHHHHTTC-------------HHHHHH---HHHTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-------------HHHHHH---HHHhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence 34446689999999999986653 111222 233378889988887753 3455778888
Q ss_pred HHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..|.+......|.-........+.-...++..|...|.+++...+++..... -..+...++.++..|++.+. ++..+.
T Consensus 77 ~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 77 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp HHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 8888877666554332222233444566888888899999998888877542 23567778888888887643 333333
Q ss_pred HHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC
Q 004922 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (723)
Q Consensus 279 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~ 358 (723)
+..... .- +.+.+. +...+.+ .|.-++-.|.+.|.++.|..+.-.
T Consensus 155 l~~~s~---~y--------------~~~k~~---~~c~~~~------l~~elv~Ly~~~~~~~~A~~~~i~--------- 199 (336)
T d1b89a_ 155 LELFWS---RV--------------NIPKVL---RAAEQAH------LWAELVFLYDKYEEYDNAIITMMN--------- 199 (336)
T ss_dssp HHHHST---TS--------------CHHHHH---HHHHTTT------CHHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred HHhccc---cC--------------CHHHHH---HHHHHcC------ChHHHHHHHHhcCCHHHHHHHHHH---------
Confidence 322211 11 112222 1222222 234456666777777766554321
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-----------TWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 359 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..++..-....+..+.+..+.+...++....++. .|+.. .-.-++..+.+.+++.....+++.....
T Consensus 200 ~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~ 277 (336)
T d1b89a_ 200 HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 277 (336)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc
Confidence 2234434444555556666655555555554442 12111 0123444444555555555666555444
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 428 GCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
+ +..+.+++.+.|...++++.-.+..
T Consensus 278 n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 278 N---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3 4568889999999999876544444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.17 E-value=0.00034 Score=57.22 Aligned_cols=123 Identities=7% Similarity=-0.034 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.+.+++|+..|+..++.. |++...+..++.++...+++..+.+ ..+.+++|+..|++.
T Consensus 10 ~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e--------------------~~~~~~~Ai~~~~kA 67 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD--------------------AKQMIQEAITKFEEA 67 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH--------------------HHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH--------------------HHHHHHHHHHHHHHH
Confidence 588999999999999876 8888888888877765544433322 224456777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHH
Q 004922 248 KKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (723)
.+..+ .+..+|..+..+|...| .+++|.+.|+...+. .|+...+..-+..+ ..+.+++.+..
T Consensus 68 l~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----~ka~~~~~e~~ 140 (145)
T d1zu2a1 68 LLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----AKAPQLHAEAY 140 (145)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----HTHHHHHHHHH
T ss_pred HHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 76421 35667777777776554 356777777777765 45655555554443 34556666665
Q ss_pred HcC
Q 004922 317 KLG 319 (723)
Q Consensus 317 ~~g 319 (723)
+.|
T Consensus 141 k~~ 143 (145)
T d1zu2a1 141 KQG 143 (145)
T ss_dssp HSS
T ss_pred HHh
Confidence 554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.04 E-value=0.00019 Score=65.37 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.++.. |.....+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 4799999999999998866 777776777777777777777666665553 3344444444444333333222221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
-.......+.+++...+......+...|+.++|.++++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1111011011112223333444555666666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.92 E-value=0.0032 Score=51.12 Aligned_cols=126 Identities=8% Similarity=-0.021 Sum_probs=74.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (723)
|-+.+.+++|+..|+...+.. +.+..++..+..+|...+++..+.+-.+. +++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~-----------------------~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQM-----------------------IQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHH-----------------------HHHHHH
Confidence 455677999999999988753 24778888888888776655444332221 234666
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH
Q 004922 311 VYKNMQKLGVMADMASYNILLKACCLAGN-----------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 311 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----------~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~ 379 (723)
.|++..+.. +.+..+|..+..+|...|+ +++|.+.|++... +.|+...|..-+..+
T Consensus 63 ~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~------l~P~~~~~~~~L~~~------ 129 (145)
T d1zu2a1 63 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD------EQPDNTHYLKSLEMT------ 129 (145)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHH------
T ss_pred HHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc------cCCCHHHHHHHHHHH------
Confidence 666666554 4456677777777665442 4556666666665 445554444333322
Q ss_pred HHHHHHHHHHHHCC
Q 004922 380 QMALKVKEDMLSAG 393 (723)
Q Consensus 380 ~~a~~~~~~m~~~~ 393 (723)
..|.+++.+..+.|
T Consensus 130 ~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 AKAPQLHAEAYKQG 143 (145)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh
Confidence 24444555444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.65 E-value=0.016 Score=47.56 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=53.9
Q ss_pred hHHHH--HHHHHHcCChHHHHHHHHHHHhhhhcCCccc-------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 004922 326 SYNIL--LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-------DVFTYSTIVKVFADAKWWQMALKVKEDMLSA---- 392 (723)
Q Consensus 326 ~~~~l--l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 392 (723)
+|..+ ...+...|++++|...|++...+........ ....|+.+..+|.+.|++++|...+++.+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455567888888888888776432210000 1245666666667777777766666665532
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 393 -GVTPN-----TITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 393 -~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
...++ ...++.+..+|...|++++|+..|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1134445555555666666655555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.62 E-value=0.0042 Score=51.22 Aligned_cols=111 Identities=10% Similarity=-0.097 Sum_probs=71.6
Q ss_pred hhhHHHH--HHHHhhcCChHHHHHHHHHHHHhcCC-hhhH---HHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 71 NDYYADM--ASKLAKDGRLEEFAMIVESVVVSEGN-VSKF---ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 71 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
..+|..+ +..+...|++++|+..|+++++.... |+.. ........+.++...|...|++++|++.+++.++.
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~-- 84 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-- 84 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc--
Confidence 3455555 55677889999999999999987532 2111 11112345677888899999999999999998863
Q ss_pred Cccc-----ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHh
Q 004922 145 APLE-----LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 145 ~p~~-----~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
.|.. .........+.+....+...|++++|+..|++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 00111122333334445557888888888888765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.59 E-value=0.0023 Score=57.94 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
++++|+..+++.++.. +.|...+..+...++..|++++|...|+...+
T Consensus 11 ~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 11 QLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp CHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333333333333332 33444555555555555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0029 Score=46.86 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=53.7
Q ss_pred HHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc-ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccc
Q 004922 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE-LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (723)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (723)
..-+..+...+.+.|++++|+.+|+++++. .|.. .........+-+....+.+.|++++|++.++++++.. |+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~--~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQ--LDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCH
Confidence 344556777789999999999999999874 2211 1111222334444444555899999999999998866 6665
Q ss_pred ccHHHH
Q 004922 192 DEEFRI 197 (723)
Q Consensus 192 ~~~~~l 197 (723)
..+..+
T Consensus 81 ~a~~Nl 86 (95)
T d1tjca_ 81 RANGNL 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.052 Score=39.65 Aligned_cols=77 Identities=10% Similarity=-0.019 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC-cccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
.+-.+...+.+.|++++|...|++..++..... ..++ ..+++.+..++.+.|++++|+..++++++..+. +..+++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 344567777788888888888887766432221 1112 346777777778888888888888877776433 3444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.68 E-value=0.53 Score=36.50 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=6.4
Q ss_pred ChHHHHHHHHHHHHc
Q 004922 304 DLKFTLEVYKNMQKL 318 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~ 318 (723)
+.+++.+.+++..+.
T Consensus 38 ~~~~a~~~~~~aa~~ 52 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL 52 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhhhhcc
Confidence 344444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.34 E-value=0.47 Score=36.83 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh----cCChH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN----AHDLK 306 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~ 306 (723)
.+.++|++.|.+..+.| +...+..|...|.. ..+.++|.+.|+...+.|. |+....-..+... .++.+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-QDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc-chHHHHHHHHHHcCCccCCCHH
Confidence 35556666666655543 34444444444433 2455666666666666552 2222222222211 13566
Q ss_pred HHHHHHHHHHHcC
Q 004922 307 FTLEVYKNMQKLG 319 (723)
Q Consensus 307 ~a~~~~~~m~~~g 319 (723)
.|.+.|+...+.|
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.58 E-value=1 Score=33.64 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C----------------CCCCHHHHHHHH
Q 004922 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-G----------------MSPDVVAYTTAI 590 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g----------------~~p~~~~~~~li 590 (723)
..+++.++..+.... .+..-||.+|.-....-+-+...++++..-+. . ...+...++..+
T Consensus 17 ~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdlAL 93 (161)
T d1wy6a1 17 YIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL 93 (161)
T ss_dssp CHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred hHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence 467777777777663 34445555555444444455555555544321 1 123556677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC
Q 004922 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
..+..+|+-+.-.+++..+.+. -+|++...-.+..+|.+.|...+ +-+++.+..+.|.+
T Consensus 94 d~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re---~nell~~ACe~G~K 152 (161)
T d1wy6a1 94 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERD---ATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhh---HHHHHHHHHHHhHH
Confidence 8999999999999999997764 48999999999999999999665 45588888888875
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.87 E-value=1.8 Score=32.29 Aligned_cols=83 Identities=7% Similarity=-0.033 Sum_probs=65.7
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
++.......+-.+......+..-++.+..+|+-++-.+++..+.+. -++++...-.+..+|.+.|...++.+++.+.-+
T Consensus 70 ~Nlk~vv~C~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 70 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444444555555555566777788999999999999999997774 457888899999999999999999999999999
Q ss_pred CCCc
Q 004922 285 QNVT 288 (723)
Q Consensus 285 ~g~~ 288 (723)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 9874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.56 E-value=1.3 Score=33.38 Aligned_cols=74 Identities=9% Similarity=-0.086 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 545 SPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP-DV-VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
.|+..|--...+++.+.. +.++++.+|++..+. .| +. ..+-.|..+|.+.|++++|.+.++.+.+ +.|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 355556556677777664 467899999998864 34 33 4666777789999999999999999987 567644
Q ss_pred HHH
Q 004922 620 TYI 622 (723)
Q Consensus 620 ~~~ 622 (723)
-..
T Consensus 108 qA~ 110 (124)
T d2pqrb1 108 QVG 110 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.88 E-value=2.3 Score=29.95 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.. +.++..+|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 44455555556655666666666666666666666666666666655532 2334445555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.92 E-value=2.9 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+.-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5556666777777777778888888888888888888888888876654
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.19 E-value=4.4 Score=30.28 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 361 LDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++..+--....++++.. ++++++.++++....+..-....+..|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44555555555666543 45677888887776532211345566777778888888888888888775
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