Citrus Sinensis ID: 004939

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--
MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
cccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccccEEccccEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccHHccccccccccccccEEEEccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccEEcc
cccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mdrktidldqgwDYMQKGITKLKRIleglpespfsseEYMMLYTTIYNmctqkpphdysqQLYDKYKQAFEEYISSmvlpslsekhdEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLqdtgayysrkasnwiledscpeYMIKAEECLKKERDRVshylhsssepklvEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHkipkglepVANVFKQHITAEGTVLVQQAEdaatnqggssgavQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCnkavggssssELLATFCDNILkkggneklsDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdrsanddhERSILTKLKqqcggqftskmegMVTDLTLARENQTSFEEYLSnnqnahpgidlSVTVLTtgfwpsykssdlnlpseMVKCVEVFKGFYetktkhrklTWIYSlgqcningkfeqKNIELIVSTYQAATLLLFntsdrlsysEIMTQLNLTHDDLVRLLHSLSCAKYKIllkepntktisqsdhfefnskFTDRMRrikiplppvderkkIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDylerdkenpnmfryla
mdrktidldqgwdymQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKeregeqidralLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLhsssepklvekVQHELLVVYATELLEkeqsgcrallredkvedLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAAtnqggssgavqeQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdrsanddhersiltklkqqcggqftskMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYkssdlnlpsEMVKCVEVFKGFYetktkhrkltWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLkepntktisqsdhfefnskftdrmrrikiplppvderkkivedvdkdrrYAIDAALVRIMKSRKVLGHQQLVSECVEQlsrmfkpdikaIKKRMEDLitrdylerdkenpnmfryla
MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
*******LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKE**RVSHYL*******LVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQ**************VQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRS********ILTKLKQQCGGQFT****GMVTDLTLA*********YL***QNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKT*****HFEFNSKFTDRMRRIKIPLPPVD*RKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDY***************
***KTIDLDQGWDYMQKGITKLKRILEG********EEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDA*TNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNIL************IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE*****ISQSDHFEFNSKFTDRMRRIK*******************RRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAE************VQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
***KTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQIDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query722 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 1.0 0.978 0.852 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 1.0 0.973 0.656 0.0
P0CH31721 Putative cullin-like prot no no 0.962 0.963 0.657 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.954 0.895 0.352 1e-126
Q13619759 Cullin-4A OS=Homo sapiens yes no 0.900 0.856 0.350 1e-116
Q9XIE9374 Putative cullin-like prot no no 0.458 0.885 0.580 1e-115
A2A432970 Cullin-4B OS=Mus musculus yes no 0.947 0.705 0.344 1e-113
Q13620913 Cullin-4B OS=Homo sapiens no no 0.947 0.749 0.342 1e-112
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.907 0.862 0.347 1e-109
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.939 0.926 0.333 1e-107
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1327 bits (3435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/738 (85%), Positives = 684/738 (92%), Gaps = 16/738 (2%)

Query: 1   MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQ 60
           M+RKTIDL+QGWDYMQ GITKLKRILEGL E  F SE+YMMLYTTIYNMCTQKPPHDYSQ
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQ 60

Query: 61  QLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFI 120
           QLYDKY++AFEEYI+S VLP+L EKHDE+MLREL KRW+NHKVMVRWLSRFF+YLDRYFI
Sbjct: 61  QLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFI 120

Query: 121 ARRSLPALNEVGLTCFREQI----------------DKEREGEQIDRALLKNVLDIFVEI 164
           ARRSLP LNEVGLTCFR+ +                DKEREGEQIDRALLKNVLDI+VEI
Sbjct: 121 ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEI 180

Query: 165 GMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLH 224
           GMGQM+ YE+DFE  MLQDT +YYSRKAS+WI EDSCP+YM+K+EECLKKER+RV+HYLH
Sbjct: 181 GMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLH 240

Query: 225 SSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPV 284
           SSSEPKLVEKVQHELLVV+A++LLEKE SGCRALLR+DKV+DLSRMYRLYHKI +GLEPV
Sbjct: 241 SSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPV 300

Query: 285 ANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINH 344
           AN+FKQH+TAEG  LVQQAED ATNQ  ++ +VQEQVLIRK+IELHDKYM YVT CF NH
Sbjct: 301 ANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNH 360

Query: 345 TLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLL 404
           TLFHKALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLL
Sbjct: 361 TLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLL 420

Query: 405 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 464
           AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL
Sbjct: 421 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 480

Query: 465 ARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYE 524
           ARENQ SFE+YL +N  A+PGIDL+VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYE
Sbjct: 481 ARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYE 540

Query: 525 TKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNL 584
           TKTKHRKLTWIYSLG C+INGKF+QK IELIVSTYQAA LLLFNT+D+LSY+EI+ QLNL
Sbjct: 541 TKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNL 600

Query: 585 THDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKK 644
           +H+DLVRLLHSLSCAKYKILLKEPNTKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK
Sbjct: 601 SHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKK 660

Query: 645 IVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 704
           +VEDVDKDRRYAIDAA+VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT
Sbjct: 661 VVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 720

Query: 705 RDYLERDKENPNMFRYLA 722
           RDYLERDKENPNMFRYLA
Sbjct: 721 RDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
297814051738 ATCUL1 [Arabidopsis lyrata subsp. lyrata 1.0 0.978 0.856 0.0
386688468738 cullin 1-like protein A [Prunus avium] 1.0 0.978 0.852 0.0
18411983738 cullin 1 [Arabidopsis thaliana] gi|79324 1.0 0.978 0.852 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 0.998 0.969 0.831 0.0
224123204744 predicted protein [Populus trichocarpa] 0.998 0.969 0.832 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 0.998 0.969 0.831 0.0
255551707744 Cullin-1, putative [Ricinus communis] gi 0.998 0.969 0.827 0.0
224107343742 predicted protein [Populus trichocarpa] 0.998 0.971 0.827 0.0
386688470744 cullin 1-like protein B [Prunus avium] 0.998 0.969 0.820 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.998 0.969 0.814 0.0
>gi|297814051|ref|XP_002874909.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] gi|297320746|gb|EFH51168.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score = 1336 bits (3458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/738 (85%), Positives = 687/738 (93%), Gaps = 16/738 (2%)

Query: 1   MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQ 60
           M+RKTIDL+QGWDYMQ GITKLKRILEGLPE  F SE+YMMLYTTIYNMCTQKPPHDYSQ
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLPEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQ 60

Query: 61  QLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFI 120
           QLYDKY++AFEEYI+S VLP+L EKHDEYMLRELVKRW+NHKVMVRWLSRFF+YLDRYFI
Sbjct: 61  QLYDKYREAFEEYINSTVLPALREKHDEYMLRELVKRWSNHKVMVRWLSRFFYYLDRYFI 120

Query: 121 ARRSLPALNEVGLTCFREQI----------------DKEREGEQIDRALLKNVLDIFVEI 164
           ARRSLP LNEVGLTCFR+ +                DKEREGEQIDRALLKNVLDI+VEI
Sbjct: 121 ARRSLPPLNEVGLTCFRDLVYNELHSKVKEAVIALVDKEREGEQIDRALLKNVLDIYVEI 180

Query: 165 GMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLH 224
           GMGQM+ YE+DFE  MLQDT +YYSRKAS+WI EDSCP+YM+K+EECLKKER+RV+HYLH
Sbjct: 181 GMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVTHYLH 240

Query: 225 SSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPV 284
           SSSEPKLVEKVQHELLVVYA++LLEKE SGCRALLR+DKV+DLSRMYRLYHKI +GLEPV
Sbjct: 241 SSSEPKLVEKVQHELLVVYASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKIVRGLEPV 300

Query: 285 ANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINH 344
           AN+FKQH+TAEG  LVQQAED ATNQ  ++ +VQEQVLIRK+IELHDKYM YVT CF NH
Sbjct: 301 ANIFKQHVTAEGNTLVQQAEDTATNQAANTASVQEQVLIRKVIELHDKYMVYVTECFQNH 360

Query: 345 TLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLL 404
           TLFHKALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLL
Sbjct: 361 TLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLL 420

Query: 405 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 464
           AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL
Sbjct: 421 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 480

Query: 465 ARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYE 524
           ARENQ SFE+YL NN  A+PGIDL+VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYE
Sbjct: 481 ARENQNSFEDYLGNNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYE 540

Query: 525 TKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNL 584
           TKTKHRKLTWIYSLG C+INGKF+QK+IELIVSTYQAA LLLFNT+D+L+Y+EI+ QLNL
Sbjct: 541 TKTKHRKLTWIYSLGTCHINGKFDQKSIELIVSTYQAAVLLLFNTTDKLNYTEILAQLNL 600

Query: 585 THDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKK 644
           +H+DLVRLLHSLSCAKYKILLKEP+TKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK
Sbjct: 601 SHEDLVRLLHSLSCAKYKILLKEPSTKTVSQTDVFEFNSKFTDRMRRIKIPLPPVDERKK 660

Query: 645 IVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 704
           +VEDVDKDRRYAIDAA+VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT
Sbjct: 661 VVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 720

Query: 705 RDYLERDKENPNMFRYLA 722
           RDYLERDKENPNMFRYLA
Sbjct: 721 RDYLERDKENPNMFRYLA 738

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|386688468|gb|AFJ21664.1| cullin 1-like protein A [Prunus avium] Back     alignment and taxonomy information
>gi|18411983|ref|NP_567243.1| cullin 1 [Arabidopsis thaliana] gi|79324981|ref|NP_001031575.1| cullin 1 [Arabidopsis thaliana] gi|79324983|ref|NP_001031576.1| cullin 1 [Arabidopsis thaliana] gi|334186321|ref|NP_001190661.1| cullin 1 [Arabidopsis thaliana] gi|68052236|sp|Q94AH6.1|CUL1_ARATH RecName: Full=Cullin-1 gi|15028161|gb|AAK76704.1| putative cullin 1 protein [Arabidopsis thaliana] gi|22136936|gb|AAM91812.1| putative cullin 1 protein [Arabidopsis thaliana] gi|30524960|emb|CAC85264.1| cullin 1 [Arabidopsis thaliana] gi|222423687|dbj|BAH19810.1| AT4G02570 [Arabidopsis thaliana] gi|332656794|gb|AEE82194.1| cullin 1 [Arabidopsis thaliana] gi|332656795|gb|AEE82195.1| cullin 1 [Arabidopsis thaliana] gi|332656796|gb|AEE82196.1| cullin 1 [Arabidopsis thaliana] gi|332656797|gb|AEE82197.1| cullin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 1.0 0.978 0.852 0.0
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.590 0.590 0.642 2.6e-261
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.871 0.847 0.659 3.9e-227
DICTYBASE|DDB_G0284903769 culC "cullin C" [Dictyostelium 0.800 0.751 0.356 1.1e-122
FB|FBgn0261268934 Cul-3 "Cullin-3" [Drosophila m 0.739 0.571 0.281 4.6e-103
UNIPROTKB|Q6DE95768 cul3a "Cullin-3-A" [Xenopus la 0.720 0.677 0.286 8.4e-102
UNIPROTKB|Q6GPF3768 cul3b "Cullin-3-B" [Xenopus la 0.720 0.677 0.286 1.8e-101
ZFIN|ZDB-GENE-081007-1766 cul3b "cullin 3b" [Danio rerio 0.720 0.678 0.287 1.8e-101
UNIPROTKB|E1BYQ3746 CUL3 "Uncharacterized protein" 0.720 0.697 0.286 2.2e-101
UNIPROTKB|A4IHP4768 cul3 "Cullin-3" [Xenopus (Silu 0.720 0.677 0.286 2.2e-101
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3301 (1167.1 bits), Expect = 0., P = 0.
 Identities = 629/738 (85%), Positives = 684/738 (92%)

Query:     1 MDRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQ 60
             M+RKTIDL+QGWDYMQ GITKLKRILEGL E  F SE+YMMLYTTIYNMCTQKPPHDYSQ
Sbjct:     1 MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQ 60

Query:    61 QLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFI 120
             QLYDKY++AFEEYI+S VLP+L EKHDE+MLREL KRW+NHKVMVRWLSRFF+YLDRYFI
Sbjct:    61 QLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFI 120

Query:   121 ARRSLPALNEVGLTCFREQI----------------DKEREGEQIDRALLKNVLDIFVEI 164
             ARRSLP LNEVGLTCFR+ +                DKEREGEQIDRALLKNVLDI+VEI
Sbjct:   121 ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEI 180

Query:   165 GMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLH 224
             GMGQM+ YE+DFE  MLQDT +YYSRKAS+WI EDSCP+YM+K+EECLKKER+RV+HYLH
Sbjct:   181 GMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLH 240

Query:   225 SSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPV 284
             SSSEPKLVEKVQHELLVV+A++LLEKE SGCRALLR+DKV+DLSRMYRLYHKI +GLEPV
Sbjct:   241 SSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPV 300

Query:   285 ANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINH 344
             AN+FKQH+TAEG  LVQQAED ATNQ  ++ +VQEQVLIRK+IELHDKYM YVT CF NH
Sbjct:   301 ANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNH 360

Query:   345 TLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLL 404
             TLFHKALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLL
Sbjct:   361 TLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLL 420

Query:   405 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 464
             AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL
Sbjct:   421 AYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTL 480

Query:   465 ARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYE 524
             ARENQ SFE+YL +N  A+PGIDL+VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYE
Sbjct:   481 ARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYE 540

Query:   525 TKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNL 584
             TKTKHRKLTWIYSLG C+INGKF+QK IELIVSTYQAA LLLFNT+D+LSY+EI+ QLNL
Sbjct:   541 TKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNL 600

Query:   585 THDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKK 644
             +H+DLVRLLHSLSCAKYKILLKEPNTKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK
Sbjct:   601 SHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKK 660

Query:   645 IVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 704
             +VEDVDKDRRYAIDAA+VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT
Sbjct:   661 VVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLIT 720

Query:   705 RDYLERDKENPNMFRYLA 722
             RDYLERDKENPNMFRYLA
Sbjct:   721 RDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0261268 Cul-3 "Cullin-3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DE95 cul3a "Cullin-3-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GPF3 cul3b "Cullin-3-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYQ3 CUL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A4IHP4 cul3 "Cullin-3" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13619CUL4A_HUMANNo assigned EC number0.35030.90020.8563yesno
Q94AH6CUL1_ARATHNo assigned EC number0.85231.00.9783yesno
Q54NZ5CUL3_DICDINo assigned EC number0.35200.95420.8959yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_604014.1
annotation not avaliable (738 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__2094__AT5G20570.1
annotation not avaliable (118 aa)
    ••• 0.649
fgenesh2_kg.5__160__AT2G02560.1
annotation not avaliable (1219 aa)
    ••• 0.494

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-114
smart00182143 smart00182, CULLIN, Cullin 7e-58
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 3e-28
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 4e-26
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.002
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  568 bits (1465), Expect = 0.0
 Identities = 257/632 (40%), Positives = 374/632 (59%), Gaps = 46/632 (7%)

Query: 12  WDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFE 71
           W+ +   I ++           FSS +YM LYT +YN      PH   ++LY++ K+  E
Sbjct: 1   WEKLLDAIDQILL-------KSFSSLDYMELYTAVYNYV----PHKLGEKLYNRLKEYLE 49

Query: 72  EYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEV 131
           EY+++ +L S+ E  DE +L+   K W      ++ L+  F YL+RY++ R++L  + E+
Sbjct: 50  EYVAA-LLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYEL 108

Query: 132 GLTCFREQ----------------IDKEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKD 175
           GL  +RE                 I+KER GE IDR+L+KNVLD+FVE+G+ +++ Y++D
Sbjct: 109 GLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKED 168

Query: 176 FEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKV 235
           FE+  L+ T  +Y +++S ++ E+S  EYM K EE L++E +RV  YLHSS+E KL+E  
Sbjct: 169 FEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVC 228

Query: 236 QHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAE 295
           +  L+     + LE   S  + LL  +K+EDL RMYRL  ++P GLEP+   F++HI  E
Sbjct: 229 EKVLI----EKHLEFLHSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKE 284

Query: 296 GTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAF 355
           G   V                   +  ++ ++ELHDKY   V   F N  LF  AL +AF
Sbjct: 285 GLAAVSDLA----------VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAF 334

Query: 356 EIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAE 415
           E F N     S S+ELLA +CD++LKK   + L++E +EE L+K++ L  YI DKD+F +
Sbjct: 335 EEFINS--NSSKSAELLAKYCDSLLKKS-LKGLNEEELEEKLDKIIVLFKYIEDKDVFEK 391

Query: 416 FYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEY 475
           FYRK LA+RLL   SA+DD E+ ++ KLKQ+CG QFTSK+E M  D++L++E   SF+ +
Sbjct: 392 FYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNH 451

Query: 476 LSNNQNAHP-GIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTW 534
           L NN +    GIDLSV VL+TGFWP+  +   +LP E+ K +E F+ FY  K   RKLTW
Sbjct: 452 LENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTW 511

Query: 535 IYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLH 594
           ++SLG+  +  +F  K  EL VSTYQ A LLLFN  + L+  E+     L+ D L R L 
Sbjct: 512 LHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQ 571

Query: 595 SLSCAKYKILLKEPNTKTISQSDHFEFNSKFT 626
           SL  AK  +L K P  +  S +  F  NS FT
Sbjct: 572 SLLKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 722
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.77
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 95.94
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 93.48
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 91.6
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 91.59
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 91.54
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 90.22
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 89.49
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 88.02
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 86.54
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.23
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 86.01
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 85.94
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 85.28
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 84.06
COG3682123 Predicted transcriptional regulator [Transcription 83.96
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 83.15
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 81.59
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 81.26
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 81.24
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-119  Score=1013.31  Aligned_cols=703  Identities=67%  Similarity=1.104  Sum_probs=651.2

Q ss_pred             CCCCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccc
Q 004939            2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS   81 (722)
Q Consensus         2 ~~~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~   81 (722)
                      -+.+.+|+..|+.++++++++.+..++-....++.-+++.+|+++|++|+++++.+..++||+++++++.+|+.+.+.+.
T Consensus         4 ~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~   83 (725)
T KOG2166|consen    4 APKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPA   83 (725)
T ss_pred             cccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778999999999999999998876433335778889999999999999996555569999999999999999988777


Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcC-CCCcHHHHH-HHHHHH-----------------HHHH
Q 004939           82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARR-SLPALNEVG-LTCFRE-----------------QIDK  142 (722)
Q Consensus        82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~-~~~~i~~l~-l~lf~~-----------------~I~~  142 (722)
                      .....++.+|..+...|.+|+.++.+++++|+||||+||++. +..++++++ +.+|+.                 +|..
T Consensus        84 ~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~  163 (725)
T KOG2166|consen   84 LREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHK  163 (725)
T ss_pred             HHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHh
Confidence            777788899999999999999999999999999999999865 555555544 333322                 7899


Q ss_pred             HhcCCccCHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHchh
Q 004939          143 EREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHY  222 (722)
Q Consensus       143 ~R~g~~i~~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~  222 (722)
                      +|.|+.||+..|+++++|++.+|.+..++|...||++|++.|..||..+++.|+...++++|+.+|+.++.+|..|+..|
T Consensus       164 eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~y  243 (725)
T KOG2166|consen  164 EREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHY  243 (725)
T ss_pred             hcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHh
Q 004939          223 LHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQ  302 (722)
Q Consensus       223 l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~i~~~  302 (722)
                      ++..+.+++.+.+...++..+++.+++..++|+..|+.+++.++|.+||+|++++++|++++++.|+.|++.+|..++..
T Consensus       244 l~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r  323 (725)
T KOG2166|consen  244 LHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVAR  323 (725)
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             hHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHhhc
Q 004939          303 AEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKK  382 (722)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~lk~  382 (722)
                      .....        ..+|..++..+++++++|..++..||.++..|..+++.||..|+|.+...  .+|+||+|||.++|+
T Consensus       324 ~~~~~--------~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~~--~~E~la~y~D~~lkk  393 (725)
T KOG2166|consen  324 PAETA--------ATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVAT--SAELLATYCDDILKK  393 (725)
T ss_pred             hhhhc--------ccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCCC--cHHHHHHHhHHHhcc
Confidence            65432        15789999999999999999999999999999999999999999998632  269999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhhheecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhcchhhHhHHHHHHhH
Q 004939          383 GGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL  462 (722)
Q Consensus       383 ~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~  462 (722)
                      + ..+.++++++..+++++.+|+|+.+||+|+.+|+++||+|||+++|.|+++|+.||.+|+++||.+||.+|++|++|+
T Consensus       394 ~-~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~  472 (725)
T KOG2166|consen  394 G-SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDL  472 (725)
T ss_pred             c-ccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccH
Confidence            4 466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcCCCceEEeccCCceEE
Q 004939          463 TLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCN  542 (722)
Q Consensus       463 ~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~  542 (722)
                      ..|++++..|.++.  +.....+++|.|.|||.|+||.+++.++.||++|.++++.|.+||..+|+||+|.|+|++|.|+
T Consensus       473 ~~s~~l~~~F~~~~--~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~e  550 (725)
T KOG2166|consen  473 TLSRELQTAFADYA--NYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGE  550 (725)
T ss_pred             HHHHHHHHHHHhhh--chhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccCceE
Confidence            99999999999871  1222357999999999999999888889999999999999999999999999999999999999


Q ss_pred             EEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEec
Q 004939          543 INGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN  622 (722)
Q Consensus       543 i~~~~~~~~~~l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N  622 (722)
                      |.++|.+++++|+|||+||+||++||+.+.+|+++|.+.|+++.+++.++|+||++.|.+++.+ |.++. ++++.|.+|
T Consensus       551 i~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~~~N  628 (725)
T KOG2166|consen  551 INGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEFAFN  628 (725)
T ss_pred             EEEEecCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEEEee
Confidence            9999999999999999999999999999999999999999999999999999999888677766 66666 889999999


Q ss_pred             ccCCCCCcceeccCCChhhhhhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhh
Q 004939          623 SKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDL  702 (722)
Q Consensus       623 ~~f~~~~~~i~i~~~~~~e~~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~L  702 (722)
                      .+|+++++|++++.++.++.+.+.+.+++||+..|+||||||||+||.+.|++|+.||++|++++|.|++.+||+|||.|
T Consensus       629 ~~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~Ie~L  708 (725)
T KOG2166|consen  629 SKFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRIEDL  708 (725)
T ss_pred             ccccCcceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence            99999999999998887788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccCCCCCceee
Q 004939          703 ITRDYLERDKENPNMFRY  720 (722)
Q Consensus       703 iereyl~r~~~d~~~y~Y  720 (722)
                      ||||||+|| +|+++|+|
T Consensus       709 IEkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  709 IEREYLERD-ENPNIYRY  725 (725)
T ss_pred             HHHHHHhcc-CCCCcccC
Confidence            999999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-117
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-117
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-113
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-113
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 6e-97
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 4e-96
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-58
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 2e-56
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-37
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-32
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-32
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-31
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-31
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-28
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 2e-28
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 6e-26
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 5e-18
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 6e-16
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 7e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 5e-13
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 3e-07
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 7e-07
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure 
Iteration: 1

 Score =  420 bits (1080), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/705 (35%), Positives = 398/705 (56%), Gaps = 55/705 (7%)
Query: 42  LYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLSEKHDEYM-LRELVKRWAN 100
           LY  + N+C+    H  S  LY + +QA E+++ + +LP   +  D  + L+++   W +
Sbjct: 69  LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 101 HKVMVRWLSRFFHYLDRYFIARRS-LPALNEVGLTCFREQI------------------D 141
           H   +  +   F +LDR ++ + S LP++ ++GL  FR  I                  +
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 184
Query: 142 KEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSC 201
           +ER GE +DR+LL+++L +     +  +  Y+  FE   L++T   Y+ +    + E   
Sbjct: 185 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 239
Query: 202 PEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLRE 261
           PEY+    + L++E DRV  YL  S++  L+  V+ +LL  + T +L+K   G   LL E
Sbjct: 240 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 296
Query: 262 DKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQV 321
           ++V DL++MY+L+ ++  G + +   + ++I   GT +V   E             +++ 
Sbjct: 297 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE-------------KDKD 343
Query: 322 LIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILK 381
           +++ +++  DK    +  CF  +  F   +KE+FE F NK    +  +EL+A   D+ L+
Sbjct: 344 MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR--PNKPAELIAKHVDSKLR 401
Query: 382 KGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILT 441
             GN++ +DE +E TL+K++ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+
Sbjct: 402 -AGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLS 460
Query: 442 KLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSY 501
           KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P IDL+V +LT G+WP+Y
Sbjct: 461 KLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYWPTY 519
Query: 502 KSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQA 561
              +++L  EM+K  EVFK FY  K   RKL W  +LG   +  +F++   E  VS +Q 
Sbjct: 520 TPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQT 579
Query: 562 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEF 621
             LL+FN  D  S+ EI     +   +L R L SL+C K ++L+K P  K +   D F F
Sbjct: 580 LVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIF 639
Query: 622 NSKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLV 677
           N +F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK LGH  LV
Sbjct: 640 NGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLV 699
Query: 678 SECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722
           SE   QL    KP    +KKR+E LI RDY+ERDK+NPN + Y+A
Sbjct: 700 SELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-111
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-87
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 2e-87
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-84
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 7e-75
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 7e-30
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 5e-29
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 2e-27
3o2p_E88 Cell division control protein 53; ligase, cell cyc 6e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  627 bits (1618), Expect = 0.0
 Identities = 232/782 (29%), Positives = 401/782 (51%), Gaps = 89/782 (11%)

Query: 8   LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQ------- 60
           LDQ WD ++ GI ++            +   YM LYT +YN CT     + ++       
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 61  ----------------QLYDKYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVM 104
                           +LY + K+  + Y+++ +L    +  DE +L+   ++W +++  
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 105 VRWLSRFFHYLDRYFIAR------RSLPALNEVGLTCFRE----------------QIDK 142
            + L+    YL+R+++ R      + +  +  + L  +R+                 I+K
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 143 EREGEQIDRALLKNVLDIFVEIGMGQMDS---------YEKDFEEHMLQDTGAYYSRKAS 193
           ER GE I+  L+  V+  +VE+G+ + D+         Y++ FE   L DT  +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 194 NWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQS 253
            ++ ++   EYM KAE  L +E+ RV  YLH S++ +L  K +  L+     + LE   +
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLI----EKHLEIFHT 289

Query: 254 GCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGS 313
             + LL  DK EDL RMY L  +I  GL  +  + + HI  +G   +++  +AA N    
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALND--- 346

Query: 314 SGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIF------CNKAVGGSS 367
                 ++ ++ ++++H KY   V + F N   F  AL +A   F         A   S 
Sbjct: 347 -----PKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSK 401

Query: 368 SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLF 427
           S ELLA +CD++LKK  ++   +  +E+TL +V+ +  YI DKD+F +FY K LA+RL+ 
Sbjct: 402 SPELLARYCDSLLKKS-SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVH 460

Query: 428 DRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGID 487
             SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N++     +D
Sbjct: 461 QNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEP--LDLD 518

Query: 488 LSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKF 547
            S+ VL++G WP  +S    LPSE+ +  + F  FY ++   RKLTW+Y L +  +    
Sbjct: 519 FSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNC 578

Query: 548 EQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607
            +    L  ST+Q A LL +NT D  +  ++     +  D L ++L  L  +K  +L  E
Sbjct: 579 FKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDE 638

Query: 608 PNTKT---ISQSDHFEFNSKFTDRMRRIKIPLP----PVDERKKIVEDVDKDRRYAIDAA 660
                   +      +    + ++  R+ I +P       E++   +++++DR+  I AA
Sbjct: 639 NANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAA 698

Query: 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 720
           +VRIMK RKVL HQQL+ E + QLS  FKP +  IKK ++ LI ++YLER     + + Y
Sbjct: 699 IVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSY 758

Query: 721 LA 722
           LA
Sbjct: 759 LA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.92
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.92
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.9
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.9
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 88.55
2jt1_A77 PEFI protein; solution structure, winged helix-tur 85.52
3jth_A98 Transcription activator HLYU; transcription factor 85.19
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 85.04
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 84.82
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 83.9
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 83.65
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 82.94
1sfx_A109 Conserved hypothetical protein AF2008; structural 81.42
1y0u_A96 Arsenical resistance operon repressor, putative; s 81.03
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 81.01
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 80.87
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 80.82
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 80.63
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=3.9e-132  Score=1161.84  Aligned_cols=691  Identities=33%  Similarity=0.592  Sum_probs=638.0

Q ss_pred             HHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccC-----------------------CCCCchHHHHH
Q 004939            8 LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD   64 (722)
Q Consensus         8 fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~-----------------------~~~~~~~~LY~   64 (722)
                      ||++|+.|++||++|+.   +   .+++..+||++|++||++|+++                       +|+.+|+.||+
T Consensus         1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (760)
T ss_dssp             CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence            78999999999999654   3   2689999999999999999986                       23457999999


Q ss_pred             HHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCC------CCcHHHHHHHHHHH
Q 004939           65 KYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS------LPALNEVGLTCFRE  138 (722)
Q Consensus        65 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~lf~~  138 (722)
                      ++++.++.|+.+.+. .+....++.||..|..+|.+|+.++++|+++|+||||+||++++      .++|+++|+.+||+
T Consensus        75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~  153 (760)
T 1ldj_A           75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (760)
T ss_dssp             HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence            999999999998654 34455678899999999999999999999999999999999875      78999999999998


Q ss_pred             ----------------HHHHHhcCCccCHHHHHHHHHHHHHhccc---------chhchHHHHHHHHHHHHHHHHHHHHH
Q 004939          139 ----------------QIDKEREGEQIDRALLKNVLDIFVEIGMG---------QMDSYEKDFEEHMLQDTGAYYSRKAS  193 (722)
Q Consensus       139 ----------------~I~~~R~g~~i~~~~i~~~i~~~~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~  193 (722)
                                      +|+++|.|+.||+.+|+++++||+.||.+         ++.+|.+.||++||++|.+||+.+++
T Consensus       154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~  233 (760)
T 1ldj_A          154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (760)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                            79999999999999999999999999853         36899999999999999999999999


Q ss_pred             hhHhcCChhHHHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHh
Q 004939          194 NWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRL  273 (722)
Q Consensus       194 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L  273 (722)
                      .|+.++++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+    +||..||.+++.++|++||+|
T Consensus       234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L  309 (760)
T 1ldj_A          234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (760)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999885    589999999999999999999


Q ss_pred             hccCCCChHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004939          274 YHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKE  353 (722)
Q Consensus       274 ~~~~~~~l~~l~~~~~~~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~  353 (722)
                      |+++++|++.|+..|++||.+.|.+++....+.        ...+|..||+.|+++|++|+.++..||++|+.|..++++
T Consensus       310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~--------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~  381 (760)
T 1ldj_A          310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA--------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK  381 (760)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS--------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             hCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            999999999999999999999999999764321        124689999999999999999999999999999999999


Q ss_pred             HHHHHhhCC------CCCCCcHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhheecccChhHHHHHHHHHHHHHhcC
Q 004939          354 AFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLF  427 (722)
Q Consensus       354 af~~~~N~~------~~~~~~~e~La~y~d~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~  427 (722)
                      ||+.|+|.+      .+..++||+||+|||.+||+|. ...+++|++..|++++.||+|+++||+|+.+|+++||+|||.
T Consensus       382 af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~  460 (760)
T 1ldj_A          382 ACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVH  460 (760)
T ss_dssp             HHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            999999986      2346899999999999999865 446789999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHhhcchhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCcc
Q 004939          428 DRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLN  507 (722)
Q Consensus       428 ~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~  507 (722)
                      +++.+.+.|+.||++||.+||.+||++|++||+|+..|++++..|++++.++  ...+++|+|.|||+++||..+..++.
T Consensus       461 ~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~  538 (760)
T 1ldj_A          461 QNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFA  538 (760)
T ss_dssp             TCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999987651  22478999999999999998878899


Q ss_pred             CChhHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHH
Q 004939          508 LPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHD  587 (722)
Q Consensus       508 lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~  587 (722)
                      +|++|+.+++.|++||..+|+||+|+|.+++|+|+|+++|++++++|+||++||+||++||+.+.+|++||++.||++.+
T Consensus       539 lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~  618 (760)
T 1ldj_A          539 LPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMD  618 (760)
T ss_dssp             CCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhhcccceeecCC-----CCCCCCCCCeEEecccCCCCCcceeccCCChh----hhhhHHHhHHHhhhhhhh
Q 004939          588 DLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD----ERKKIVEDVDKDRRYAID  658 (722)
Q Consensus       588 ~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~----e~~~~~~~v~~~r~~~i~  658 (722)
                      +|+++|++|+  +.+||.+.|     +|+.+.+++.|.+|.+|++++.||+|+.+...    |.+.+.+.+++||+..|+
T Consensus       619 ~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~  696 (760)
T 1ldj_A          619 ILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQ  696 (760)
T ss_dssp             HHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHhe
Confidence            9999999997  678998554     78889999999999999999999999865442    344567789999999999


Q ss_pred             hheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939          659 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA  722 (722)
Q Consensus       659 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia  722 (722)
                      ||||||||+||+|+|++|+++|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus       697 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA  760 (760)
T 1ldj_A          697 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA  760 (760)
T ss_dssp             HHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred             eeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 722
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-90
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-85
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 6e-83
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 3e-82
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 3e-30
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 6e-30
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 5e-28
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  281 bits (721), Expect = 2e-90
 Identities = 109/274 (39%), Positives = 169/274 (61%), Gaps = 2/274 (0%)

Query: 366 SSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRL 425
           +  +EL+A   D+ L+ G N++ +DE +E TL+K++ L  +I  KD+F  FY+K LA+RL
Sbjct: 1   NKPAELIAKHVDSKLRAG-NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRL 59

Query: 426 LFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPG 485
           L  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P 
Sbjct: 60  LVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP- 118

Query: 486 IDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNING 545
           IDL+V +LT G+WP+Y   +++L  EM+K  EVFK FY  K   RKL W  +LG   +  
Sbjct: 119 IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKA 178

Query: 546 KFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 605
           +F++   E  VS +Q   LL+FN  D  S+ EI     +   +L R L SL+C K ++L+
Sbjct: 179 EFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 238

Query: 606 KEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPV 639
           K P  K +   D F FN +F  ++ RIKI    +
Sbjct: 239 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM 272
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.9
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.88
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 87.46
d1mkma175 Transcriptional regulator IclR, N-terminal domain 87.38
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 85.76
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 85.32
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 84.73
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 84.11
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 83.74
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 82.03
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 81.71
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 81.44
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 80.78
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 80.33
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-55  Score=473.90  Aligned_cols=336  Identities=30%  Similarity=0.559  Sum_probs=304.2

Q ss_pred             HHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCC-----------------------CchHHHHH
Q 004939            8 LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPH-----------------------DYSQQLYD   64 (722)
Q Consensus         8 fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~-----------------------~~~~~LY~   64 (722)
                      .|++|+.|++||++|++   +   .+++..+||++|++||++|+++++.                       ..|+.||+
T Consensus         1 ~d~~W~~L~~ai~~I~~---~---~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CcchHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHH
Confidence            48999999999999653   3   2578899999999999999987422                       14789999


Q ss_pred             HHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCC------CCcHHHHHHHHHHH
Q 004939           65 KYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS------LPALNEVGLTCFRE  138 (722)
Q Consensus        65 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~lf~~  138 (722)
                      ++++.++.|+.+. .+.+....++.+|..+.+.|.+|+.++.+|+++|+||||+|+++++      .++|+++|+.+|++
T Consensus        75 ~l~~~l~~~l~~i-~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          75 RLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHH-HHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence            9999999999875 4556566678899999999999999999999999999999998753      47999999999999


Q ss_pred             ----------------HHHHHhcCCccCHHHHHHHHHHHHHhccc---------chhchHHHHHHHHHHHHHHHHHHHHH
Q 004939          139 ----------------QIDKEREGEQIDRALLKNVLDIFVEIGMG---------QMDSYEKDFEEHMLQDTGAYYSRKAS  193 (722)
Q Consensus       139 ----------------~I~~~R~g~~i~~~~i~~~i~~~~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~  193 (722)
                                      +|.++|+|+.+|+.+|++++.||+.+|..         +.++|.+.||++||++|.+||+.+++
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~  233 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            78999999999999999999999999852         45799999999999999999999999


Q ss_pred             hhHhcCChhHHHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHh
Q 004939          194 NWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRL  273 (722)
Q Consensus       194 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L  273 (722)
                      .|+.++++++|+++|+.++++|.+||..||+++|.+++.+.|+++||.+|.+.|.    +|+..||++++.++|++||+|
T Consensus       234 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L  309 (394)
T d1ldja2         234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (394)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHhCChhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998773    589999999999999999999


Q ss_pred             hccCCCChHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004939          274 YHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKE  353 (722)
Q Consensus       274 ~~~~~~~l~~l~~~~~~~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~  353 (722)
                      |++++++++.|++.|++||.+.|.++++...+..        ..+|..||+.|+++|++|+.++.+||++|+.|..++++
T Consensus       310 ~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~--------~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~  381 (394)
T d1ldja2         310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA--------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK  381 (394)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG--------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcc--------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            9999999999999999999999999997653322        24688999999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 004939          354 AFEIFCNKA  362 (722)
Q Consensus       354 af~~~~N~~  362 (722)
                      ||+.|+|++
T Consensus       382 af~~fiN~n  390 (394)
T d1ldja2         382 ACGRFINNN  390 (394)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHhCcc
Confidence            999999987
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure