Citrus Sinensis ID: 004940
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.990 | 0.998 | 0.661 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.944 | 0.979 | 0.655 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.951 | 0.966 | 0.657 | 0.0 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.962 | 0.984 | 0.634 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.961 | 0.946 | 0.532 | 0.0 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.990 | 0.957 | 0.525 | 0.0 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.968 | 0.974 | 0.531 | 0.0 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.983 | 0.942 | 0.515 | 0.0 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.976 | 0.955 | 0.514 | 0.0 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.893 | 0.888 | 0.511 | 0.0 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/723 (66%), Positives = 574/723 (79%), Gaps = 8/723 (1%)
Query: 1 MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKS 60
MN + KFVRF DW S+ + S+ + S + + + T+S++ D R +E S RIK
Sbjct: 1 MNFRQEKFVRFQDWKSDKTSSDVEYSGKNEIQTGIFQRTISSISDKFYRSFESSSARIKL 60
Query: 61 WKKPLSFRSHVMQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVID 120
+K+ S K S +ILDPQGPFLQ WNKIFVL+C+IA+S+DPLFFY+P+ID
Sbjct: 61 FKRSYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIID 120
Query: 121 GKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIA 180
+KCLG+DK +EITA VLRSF D FY+L IIFQFRTGFIA SSRVFGRG LV+D + IA
Sbjct: 121 DAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIA 180
Query: 181 KRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPL 240
KRYL S+FI+DILA+LPLPQ+V+LII+P ++G L K MLK I+F QY+PR RIYPL
Sbjct: 181 KRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPL 240
Query: 241 YNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTS 300
Y +V RTSGILTETAWAGAA NLFLYMLASH+FGA WYL+SIER+ CW+ C + N+
Sbjct: 241 YKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACER-NNPP 299
Query: 301 NCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKF 360
+ LYC N L+ SCP +P N+++F+FGI +DALQS VVE DFP+KF
Sbjct: 300 CISKLLYCDPETAGGNAFLNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFPQKF 355
Query: 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLE 420
FYCFWWGL+NLSSLGQNLKTST++ E+ FA+FISI+GLVLF+ LIGNMQ YL+STT RLE
Sbjct: 356 FYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLE 415
Query: 421 EMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480
EMRVKR+DAEQWMSHR+LPENLR RIRRYEQYKWQETRGV+EE LL NLPKDLRRDIKRH
Sbjct: 416 EMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRH 475
Query: 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT 540
LC LLMRVPMFEKMD+QLLDA+CD L+PVLYTE+S+IVREGDPV+EMLF+MRG L++ T
Sbjct: 476 LCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT 535
Query: 541 TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDL 600
T GGRTGF N+ YL AGDFCGE LLTWALDP SSSN P+STRTV+AL EVEAF+L ADDL
Sbjct: 536 TNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDL 595
Query: 601 KSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDA 660
K VASQFRRLHSKQL+H FR++S QW+TWAACFIQAAWRR+ KKKL +SL+E E+RLQDA
Sbjct: 596 KFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDA 655
Query: 661 LATEA-GALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLPQRLLPPLIPQKPAEPDFT 719
LA EA G+ SLGAT+YAS+FAAN+L +R R R+P+R +PP++ QKPAEPDF
Sbjct: 656 LAKEACGSSPSLGATIYASRFAANILRTIR-RSGSVRKPRMPER-MPPMLLQKPAEPDFN 713
Query: 720 AKD 722
+ D
Sbjct: 714 SDD 716
|
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| 224064230 | 717 | predicted protein [Populus trichocarpa] | 0.972 | 0.979 | 0.695 | 0.0 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.984 | 0.848 | 0.681 | 0.0 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.981 | 0.991 | 0.665 | 0.0 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.977 | 0.997 | 0.675 | 0.0 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.986 | 0.995 | 0.668 | 0.0 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.980 | 0.998 | 0.673 | 0.0 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.983 | 0.988 | 0.665 | 0.0 | |
| 224127923 | 670 | predicted protein [Populus trichocarpa] | 0.916 | 0.988 | 0.695 | 0.0 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.977 | 0.995 | 0.670 | 0.0 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.988 | 0.997 | 0.665 | 0.0 |
| >gi|224064230|ref|XP_002301407.1| predicted protein [Populus trichocarpa] gi|222843133|gb|EEE80680.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/722 (69%), Positives = 590/722 (81%), Gaps = 20/722 (2%)
Query: 13 DWNSENSYS-EQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKSWKKPLSFRSHV 71
DW SE S+S EQ S +DGFY R ++PT +AV D+IRRG+EMGSERI+S KKPL F
Sbjct: 2 DWRSEKSFSSEQGCSIEDGFYARKVKPTFNAVWDNIRRGWEMGSERIRSLKKPLRFYPRG 61
Query: 72 MQSEKKSVSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDG--KRKCLGLD 129
+S K+ +K+ILDPQG FLQ WNKIF+L CV+A++IDPLFFY+P ++G K KCL LD
Sbjct: 62 ARSVKEQGPKKKILDPQGSFLQNWNKIFMLVCVLAVAIDPLFFYIPWVNGTDKDKCLDLD 121
Query: 130 KTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFI 189
+E ACVLR+FID YILRI FQFRTGFIA SSRVFGRGELV+DPK IAK+YL S+FI
Sbjct: 122 HKMEAAACVLRTFIDVVYILRIAFQFRTGFIAPSSRVFGRGELVEDPKVIAKKYLTSHFI 181
Query: 190 VDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSG 249
VDILAILPLPQ+VV+II+P+V GPV L AK +L+ +IF QY+PR RIYPL+ ++ RTSG
Sbjct: 182 VDILAILPLPQVVVIIILPSVDGPVSLAAKNLLEIVIFSQYIPRFVRIYPLFKEITRTSG 241
Query: 250 ILTETAWAGAALNLFLYMLASH------IFGACWYLYSIERQDSCWRDVCRKLNDTSNC- 302
ILTETAWAGA NLFLYMLASH I GA WYL+SIER+DSCWR+VC+ D + C
Sbjct: 242 ILTETAWAGAVFNLFLYMLASHKNVICQIIGAFWYLFSIEREDSCWREVCK---DRAGCD 298
Query: 303 TTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFY 362
+T YCG N T L SCPFI PD+I+NSS+FNFGI IDAL S VVE FP+KFFY
Sbjct: 299 STYWYCGNHRPENYTFLTESCPFIQPDQIQNSSVFNFGIFIDALDSGVVESTYFPRKFFY 358
Query: 363 CFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEM 422
CFWWGLRNLSSLGQNLKTSTF+GE+ FAIFISI+GLVLFALLIGNMQKYLESTTVR+EEM
Sbjct: 359 CFWWGLRNLSSLGQNLKTSTFIGEILFAIFISITGLVLFALLIGNMQKYLESTTVRIEEM 418
Query: 423 RVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLC 482
RVKR+D+EQWMSHRMLP+NL++RIRR+EQYKWQETRGVEE GL+RNLPKDLRRDI RHLC
Sbjct: 419 RVKRRDSEQWMSHRMLPDNLKERIRRHEQYKWQETRGVEERGLIRNLPKDLRRDINRHLC 478
Query: 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY 542
DL+ +VP+FEKMD+ +LDA+CD LK LYT+ S+IVREGDPV+EMLF+MRG L+S TT
Sbjct: 479 LDLIKKVPIFEKMDEHILDAVCDRLKATLYTKDSYIVREGDPVDEMLFIMRGTLLSVTTN 538
Query: 543 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 602
GGRTGFFNAV LKAGDFCGE LLTWALDPQ SSN P+STRTVQAL+EVEAF+L A+DLK+
Sbjct: 539 GGRTGFFNAVSLKAGDFCGEGLLTWALDPQ-SSNLPISTRTVQALSEVEAFALEAEDLKT 597
Query: 603 VASQFRRLHSKQLQHAFR--FHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDA 660
VASQFRRLH K +QH FR F +QWRTWAACFIQAAW RH ++K A+SL++AE++LQDA
Sbjct: 598 VASQFRRLHHKDIQHTFRQVFRDLQWRTWAACFIQAAWHRHCRRKQAKSLRQAEEKLQDA 657
Query: 661 LATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLPQRLLPPLIPQKPAEPDFTA 720
LA EA SL +YAS+FAAN L LRQNG+ RLPQRL +PQKP EPDF+A
Sbjct: 658 LANEASTSPSLDVAIYASQFAANALR--NLRQNGTHAARLPQRL--SFLPQKPTEPDFSA 713
Query: 721 KD 722
++
Sbjct: 714 QN 715
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224127923|ref|XP_002320197.1| predicted protein [Populus trichocarpa] gi|222860970|gb|EEE98512.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.986 | 0.994 | 0.636 | 1.1e-245 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.898 | 0.932 | 0.664 | 1.6e-235 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.963 | 0.985 | 0.610 | 9.3e-233 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.987 | 0.954 | 0.517 | 4.8e-197 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.968 | 0.953 | 0.518 | 5.1e-193 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.973 | 0.980 | 0.517 | 1.1e-192 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.991 | 0.950 | 0.508 | 1.8e-188 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.979 | 0.957 | 0.505 | 5.6e-187 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.804 | 0.935 | 0.557 | 4.1e-175 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.854 | 0.910 | 0.512 | 3e-168 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2367 (838.3 bits), Expect = 1.1e-245, P = 1.1e-245
Identities = 462/726 (63%), Positives = 555/726 (76%)
Query: 1 MNTERVKFVRFDDWNSENSYSEQKPSNDDGFYPRVMRPTLSAVMDSIRRGYEMGSERIKS 60
MN + KFVRF DW S+ + S+ + S + + + T+S++ D R +E S RIK
Sbjct: 1 MNFRQEKFVRFQDWKSDKTSSDVEYSGKNEIQTGIFQRTISSISDKFYRSFESSSARIKL 60
Query: 61 WKKPLSFRSHVM-QSEKKSV-SEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPV 118
+K+ S++S+ ++ K + S +ILDPQGPFLQ WNKIFVL+C+IA+S+DPLFFY+P+
Sbjct: 61 FKR--SYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPI 118
Query: 119 IDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKA 178
ID +KCLG+DK +EITA VLRSF D FY+L IIFQFRTGFIA SSRVFGRG LV+D +
Sbjct: 119 IDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKRE 178
Query: 179 IAKRYLMSYFIVDXXXXXXXXXXXXXXXXXXXKGPVPLVAKEMLKTIIFCQYVPRIARIY 238
IAKRYL S+FI+D +G L K MLK I+F QY+PR RIY
Sbjct: 179 IAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIY 238
Query: 239 PLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLND 298
PLY +V RTSGILTETAWAGAA NLFLYMLASH+FGA WYL+SIER+ CW+ C + N
Sbjct: 239 PLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNP 298
Query: 299 TSNCTTNL-YCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFP 357
C + L YC N L+ SCP +P N+++F+FGI +DALQS VVE DFP
Sbjct: 299 P--CISKLLYCDPETAGGNAFLNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFP 352
Query: 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417
+KFFYCFWWGL+NLSSLGQNLKTST++ E+ FA+FISI+GLVLF+ LIGNMQ YL+STT
Sbjct: 353 QKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTT 412
Query: 418 RLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDI 477
RLEEMRVKR+DAEQWMSHR+LPENLR RIRRYEQYKWQETRGV+EE LL NLPKDLRRDI
Sbjct: 413 RLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDI 472
Query: 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537
KRHLC LLMRVPMFEKMD+QLLDA+CD L+PVLYTE+S+IVREGDPV+EMLF+MRG L+
Sbjct: 473 KRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLL 532
Query: 538 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597
+ TT GGRTGF N+ YL AGDFCGE LLTWALDP SSSN P+STRTV+AL EVEAF+L A
Sbjct: 533 TITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKA 592
Query: 598 DDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRL 657
DDLK VASQFRRLHSKQL+H FR++S QW+TWAACFIQAAWRR+ KKKL +SL+E E+RL
Sbjct: 593 DDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRL 652
Query: 658 QDALATEA-GALTSLGATMYASKFAANLLHPLRLRQNGSSGTXXXXXXXXXXXXXKPAEP 716
QDALA EA G+ SLGAT+YAS+FAAN+L +R ++GS KPAEP
Sbjct: 653 QDALAKEACGSSPSLGATIYASRFAANILRTIR--RSGSVRKPRMPERMPPMLLQKPAEP 710
Query: 717 DFTAKD 722
DF + D
Sbjct: 711 DFNSDD 716
|
|
| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65717 | CNGC1_ARATH | No assigned EC number | 0.6611 | 0.9903 | 0.9986 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00021581 | hypothetical protein (717 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 722 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 9e-18 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 3e-12 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 2e-08 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 3e-07 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 2e-06 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 3e-06 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 4e-05 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 9e-18
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTYGGRTGFF 549
+F +DD+ L+ + D L+ + I+R+GDP + + V+ G++ V GR
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 550 NAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRR 609
+L GD GE L + TV+ALT+ E L D FRR
Sbjct: 61 G--FLGPGDLFGELALL---------GNGPRSATVRALTDSELLVLPRSD-------FRR 102
Query: 610 LHSKQLQHAFRFH 622
L + + A R
Sbjct: 103 LLQEYPELARRLL 115
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.69 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.62 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.58 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.51 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.5 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.45 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.41 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.39 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.35 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.34 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.31 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.31 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.29 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.17 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.16 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.16 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.1 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.07 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.06 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.05 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.87 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.68 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.61 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.47 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.95 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.89 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.85 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.81 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.6 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.39 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.35 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.19 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.01 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 96.75 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.72 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 95.36 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 95.04 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 94.21 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.14 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 93.74 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 90.22 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 88.27 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 86.71 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 86.31 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 86.09 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-113 Score=965.70 Aligned_cols=573 Identities=52% Similarity=0.868 Sum_probs=512.6
Q ss_pred CceeCCCChhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEe
Q 004940 82 KRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIA 161 (722)
Q Consensus 82 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~ 161 (722)
++||||+|++++.||++++++|+|+++++|++|+|+..++...| +|..+...++++++++|+||++||+++|+|||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 77999999999999999999999999999999999999988899 7888999999999999999999999999999999
Q ss_pred cCccccCCCeeecCHHHHHHHHHhhhhhhhhhhccChhHHHHhhhccCCCCCchhhh-hhhHHHHHHhhhhhHHHHhhhh
Q 004940 162 RSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVA-KEMLKTIIFCQYVPRIARIYPL 240 (722)
Q Consensus 162 ~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~~lr~i~~~qyl~Rl~ri~~l 240 (722)
++|+ ++|.||++||+||+++||++|++|++|++++++|.++ ++..+.. ...+..+.++||||||.|+.++
T Consensus 145 ~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l 215 (727)
T KOG0498|consen 145 PSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVIPL 215 (727)
T ss_pred CCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974 7999999999999999999999999999999998776 2333333 3477888889999999999999
Q ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCccccccc
Q 004940 241 YNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLH 320 (722)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~ 320 (722)
+.++++..+++.+++|+++++++++|||++||.||+||+++.+++..||.++ +|+.
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------------tw~~ 271 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------------TWLG 271 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------------cccc
Confidence 9999999999999999999999999999999999999999999999999764 3433
Q ss_pred cccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHH
Q 004940 321 GSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVL 400 (722)
Q Consensus 321 ~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~l 400 (722)
..+...++.+ ..|+||+|.+| .+|++|||||++||||+|||+.+|+|..|++|+|++|++|+++
T Consensus 272 ~l~~~~~~~~----~~~~fg~~s~~------------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL 335 (727)
T KOG0498|consen 272 SLGRLLSCYN----LSFTFGIYSLA------------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLL 335 (727)
T ss_pred ccccccccCc----ccccccchhHH------------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHH
Confidence 3211111112 34789987654 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHH
Q 004940 401 FALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480 (722)
Q Consensus 401 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~ 480 (722)
||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||++|++|
T Consensus 336 ~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~h 415 (727)
T KOG0498|consen 336 FAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRH 415 (727)
T ss_pred HHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCee
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 560 (722)
+|.++++++|+|+++|++.+++|+.++++..|+|||+|++|||++++||||++|.+++.+.++|.+ .+...+++||+|
T Consensus 416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFF 493 (727)
T ss_pred HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999887744 458999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 004940 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 640 (722)
Q Consensus 561 Ge~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~ 640 (722)
||+.+.|.++- ++++||+|+|.|+++.|+++||.+++++||+++++++++++|+|+++|++|+++++|++|++
T Consensus 494 GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~ 566 (727)
T KOG0498|consen 494 GEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR 566 (727)
T ss_pred chHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence 97777787731 24789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHhHHHHHhhccccccccCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 004940 641 HSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLPQRLLPPLIPQKPAEPDFTA 720 (722)
Q Consensus 641 ~~~r~~~~~~~~aeery~~~~~~~p~~~~~vp~~~iASr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (722)
+.+|+....+...++. ...-...++..+.+.....|+++|+|+.+.++ .+++ +.++.. .++.+|||+||||+.
T Consensus 567 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~~-~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 567 HIKRKGEEELALEEEE-SAIRGDDRGSKSLLRAGILASRFAANGRPPLH--TAAS---RGSSDC-ALLLLQKPADPDFSD 639 (727)
T ss_pred HHHhhccchhhhhcch-hhhccccccchhhhhcccccccccccCCCccc--cccc---cCcccc-ccccCCCCCCCCccc
Confidence 9999877655543221 22222556677888999999999999999985 3322 222233 457899999999986
Q ss_pred C
Q 004940 721 K 721 (722)
Q Consensus 721 ~ 721 (722)
+
T Consensus 640 ~ 640 (727)
T KOG0498|consen 640 A 640 (727)
T ss_pred c
Confidence 5
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 722 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 2e-47 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 4e-12 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 4e-12 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 4e-12 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 5e-12 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 6e-12 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 8e-12 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 1e-11 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 7e-11 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-10 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-10 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 6e-10 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 8e-10 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 1e-07 | ||
| 3beh_A | 355 | Structure Of A Bacterial Cyclic Nucleotide Regulate | 9e-07 | ||
| 3clp_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L | 6e-06 | ||
| 1u12_A | 138 | M. Loti Cyclic Nucleotide Binding Domain Mutant Len | 9e-06 | ||
| 2k0g_A | 142 | Solution Structure Of A Bacterial Cyclic Nucleotide | 9e-06 | ||
| 3cl1_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm | 9e-06 | ||
| 1vp6_A | 138 | M.Loti Ion Channel Cylic Nucleotide Binding Domain | 1e-05 | ||
| 3co2_A | 140 | Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai | 1e-05 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 | Back alignment and structure |
| >pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 | Back alignment and structure |
| >pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 | Back alignment and structure |
| >pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 | Back alignment and structure |
| >pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 | Back alignment and structure |
| >pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 | Back alignment and structure |
| >pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 2e-70
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 17/213 (7%)
Query: 412 LESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPK 471
+ R + +D + ++ LP+ L R+ Q W G++ LL++ P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 472 DLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFV 531
+LR DI HL +LL ++P+FE L ++ +K F++R+GD ++ + FV
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 532 MRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 591
G++ L GD G LT + + V+ALT +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 592 AFSLMADDLKSVAS---QFRRLHSKQLQHAFRF 621
+ L+ V ++ + ++QH +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.96 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.86 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.85 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.8 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.79 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.77 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.77 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.76 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.76 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.75 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.75 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.75 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.74 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.74 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.73 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.72 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.71 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.71 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.7 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.7 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.7 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.69 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.68 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.67 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.67 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.67 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.65 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.63 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.61 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.6 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.59 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.58 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.56 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.55 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.51 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.51 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.5 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.49 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.49 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.48 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.48 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.47 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.45 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.44 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.43 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.42 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.41 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.41 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.4 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.39 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.37 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.34 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.24 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.23 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.22 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.14 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.09 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.01 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.96 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.94 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.86 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.81 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.71 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.67 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.6 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.53 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.39 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.27 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.24 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.18 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.12 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.09 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.07 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.91 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.57 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.33 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=298.81 Aligned_cols=187 Identities=25% Similarity=0.387 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRM 437 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 437 (722)
..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+++.+++...+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------- 220 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4578899999999999999999999999999999999999999999999998877532110
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcE
Q 004940 438 LPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSF 517 (722)
Q Consensus 438 lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~ 517 (722)
+++.+ ..+.++++++|+++++++++.++..++.+.++|||.
T Consensus 221 ---------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~ 261 (355)
T 3beh_A 221 ---------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261 (355)
T ss_dssp ---------HHHHH------------------------------HHC---------------------------------
T ss_pred ---------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCE
Confidence 00000 236788899999999999999999999999999999
Q ss_pred EEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecH
Q 004940 518 IVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (722)
Q Consensus 518 Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~ 597 (722)
|++|||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+ .+++.+++|.++|+++.+++
T Consensus 262 I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~------~~~~~~~~A~~~~~l~~i~~ 324 (355)
T 3beh_A 262 ICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SG------EPRSATVSAATTVSLLSLHS 324 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CC------CCcceEEEECccEEEEEEeH
Confidence 9999999999999999999997654 2 468999999999774 22 13578999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 004940 598 DDLKSVASQFRRLHSKQLQHAF 619 (722)
Q Consensus 598 ~df~~L~~~~P~l~~~~l~~~~ 619 (722)
++|+++++++|++.....+...
T Consensus 325 ~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 325 ADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999988765555433
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 722 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 5e-24 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 5e-15 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 3e-11 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-09 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 4e-09 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 9e-09 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 3e-08 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 7e-08 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 4e-06 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 3e-05 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 6e-05 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 9e-05 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 3e-04 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 5e-04 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 0.001 | |
| d2oz6a2 | 134 | b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei | 0.001 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 96.2 bits (238), Expect = 5e-24
Identities = 87/128 (67%), Positives = 106/128 (82%)
Query: 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG 543
+ RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT G
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 544 GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 603
GR+GF+N LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 604 ASQFRRLH 611
ASQFRR
Sbjct: 126 ASQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.78 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.75 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.72 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.7 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.67 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.67 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.66 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.64 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.63 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.62 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.6 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.59 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.59 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.55 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.52 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.36 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.19 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.06 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.89 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.59 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 96.91 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 95.95 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 91.59 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 81.25 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.1e-28 Score=238.26 Aligned_cols=184 Identities=26% Similarity=0.423 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccccCCC
Q 004940 417 VRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMD 496 (722)
Q Consensus 417 ~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls 496 (722)
.+.++|+++++.+++||+.+++|++|+.||++|++|.|.. ++.+++++++.||++|+.++..+++.++++++|+|.+++
T Consensus 2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~ 80 (193)
T d1q3ea_ 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence 5678999999999999999999999999999999999975 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCC
Q 004940 497 DQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSN 576 (722)
Q Consensus 497 ~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~ 576 (722)
++++..++..+++..|.||++|+++||+++.+|||.+|.|.++..+ +. ...+++|++||+.+++..
T Consensus 81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~-~~-----~~~l~~G~~fGe~~~~~~-------- 146 (193)
T d1q3ea_ 81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NK-----EMKLSDGSYFGEICLLTR-------- 146 (193)
T ss_dssp HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C-CC-----EEEECTTCEECHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC-cc-----eeeeccceeeeeeeccCC--------
Confidence 9999999999999999999999999999999999999999987543 22 457899999999988621
Q ss_pred CCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHH
Q 004940 577 RPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (722)
Q Consensus 577 ~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~ 616 (722)
.+++++++|+++|+++.|++++|.++++++|++.....+
T Consensus 147 -~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 185 (193)
T d1q3ea_ 147 -GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 185 (193)
T ss_dssp -SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred -CcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 136789999999999999999999999999977665443
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|