Citrus Sinensis ID: 004945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKVIFKLYSSSVSLLSSPVCL
ccccHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEccHHHHHHHHccccHHHHHHHHHHcccHHHHHccccccEEEEEEEcccccEEEEEEEccccccHHHHHHHHccccccccccccccccccccccEEEcccccEEEEEEEEcccccccccEEEEEEcHHHHHccccccEEEcEEEcccccccEEHHccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEcccccccccEEcccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccc
ccccEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEcccccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcEcccccEEEcccccccHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEccHHHHHHcccccEEEEccccccccccccccEEEEEEEEEcccccccEEEEEEEEEEcccEEEcEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEEEEcccEEEccccccc
MNVNVKREILETClttaepkqndsvsnkLVPFielssssesnsgsdsddvnedaegagdksgrpnkrrkmpqdlevvlpvgfleplpaperlpaaagndkaVSVGLQSCKQFWkagdyegapsggwefstggmdhvrvhpkflhsnatSHKWALGAFAELLDNSldevcngatysnidmlinrkdgsrmlliedngggmnpdkmrhcmslgysakskaantigqygngfktstmrLGADVIVFScccgkdgksptrsiglLSYTFLrstgkedivvpmldyegsQQEWKKIIRSSLDDWNRNVETIvqwspfsseadLLHQFNLMKDHGTRIIIYNLweddqglleldfdsdkhdiqlrgvnrdeQNIKMaqhypnsrhflTYRHSLRSYASILYLrlppgfriiirgkdvehhnivndmmlskkvtyrpqpgasgiptdlhMAVDVTIGFVkdakhhidvqgfnvyhknrlikpfwrlwnasgsdgrgvIGVLEanfvepahdkqgfeRTTVLARLEARLIQMQKDYwnnncheigyaprrykkYIKDSYdreisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasdddMHVMVTARGANGSSQKILAAEKsfgkdglhrthpsaclvdsesqqdgasggssvrpfmpsqsKVIFKLYSSSvsllsspvcl
MNVNVKREILETclttaepkqndsvsnKLVPFIELSsssesnsgsdsddvnedaegagdksgrpnkrrkmpqDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGkdgksptrsigLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFvepahdkqgferTTVLARLEARLIQMQkdywnnncheigyaprrykKYIKDSYDReisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasddDMHVMVTArgangssqkILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKVIFKLYsssvsllsspvcl
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELssssesnsgsdsddvnedAEGAGDKSGRPNKRRKMPQDLEVVLPVGFleplpaperlpaaaGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKVIFKlysssvsllssPVCL
**************************************************************************EVVLPVGFLEP**************KAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIE*************CMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR**QNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD**********************************************************************************************************************************************************VIFKLY*************
*****KR*ILETC**************************************************************************************************FWKAGDYE*****************RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLG**************GNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQ******************NSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASG*PTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGY*********************************************************************************************************************************************************************************LSSPVCL
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIEL********************************RKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSY************************************************************KMKTPVK******************SDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLV****************PFMPSQSKVIFKLYSSSV*********
*NVNVKREILETCLTTA******SVSNKLVP***************************************************************************QSCKQFW*******APSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVN**********HYP*SRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPR*********************************************************************************************************************************************************RPFMPSQSKVIFKLYSSSVSLLSS**CL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKVIFKLYSSSVSLLSSPVCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query722 2.2.26 [Sep-21-2011]
Q8BMD7 928 MORC family CW-type zinc no no 0.524 0.408 0.334 6e-52
Q14149 939 MORC family CW-type zinc yes no 0.488 0.375 0.349 2e-51
Q8TE76 937 MORC family CW-type zinc no no 0.515 0.397 0.329 5e-50
Q9Y6X9 1032 MORC family CW-type zinc no no 0.354 0.248 0.323 1e-33
Q9WVL5 950 MORC family CW-type zinc no no 0.513 0.390 0.257 1e-33
Q86VD1 984 MORC family CW-type zinc no no 0.516 0.379 0.276 4e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.340 0.238 0.330 6e-33
Q8C5W4 1022 MORC family CW-type zinc no no 0.355 0.251 0.311 2e-32
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function desciption
 Score =  206 bits (524), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 220/419 (52%), Gaps = 40/419 (9%)

Query: 138 VHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGG 197
           + P++L SN++SH     A AELLDN++D   +  T   ID+   +K     L   D+G 
Sbjct: 35  MSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVF-IDVEEVKKKPC--LTFTDDGC 91

Query: 198 GMNPDKMRHCMSLGYSAK--SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPT 255
           GM P K+   +S G++ K   K+   IG +GNGFK+ +MRLG D +VF+    K+G   T
Sbjct: 92  GMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFT----KNGN--T 145

Query: 256 RSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSE 315
            ++GLLS T+L     + ++VP++ +  SQQ  K I+    +D   ++E I+ +S F+ E
Sbjct: 146 LAVGLLSQTYLECIQAQAVIVPIVPF--SQQNKKMIV---TEDSLPSLEAILNYSIFNCE 200

Query: 316 ADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK-MAQH 373
            DLL QF+ +    GTR++I+N+  +  G  ELDFD+D++DI +   + +E+ I  +   
Sbjct: 201 KDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDAEEKEIGGVTSE 260

Query: 374 YPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPG 433
            P + +      SLR++ SILY++  P  +I +R K V    I   +   +   Y+P   
Sbjct: 261 LPETEY------SLRAFCSILYMK--PRMKIFLRQKKVTTQMIAKSLANVEYDIYKP--- 309

Query: 434 ASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL---WNASGSDGRGV 490
                T  +  V +T GF    K+H    G  +YH NRLIK F +       +  +G GV
Sbjct: 310 -----TSTNKQVRITFGF--SCKYHNQF-GVMMYHNNRLIKAFEKAGCQLKPTCGEGVGV 361

Query: 491 IGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 549
           IGV+E NF++PA++KQ FE T         L +    YW     +  + P    + I D
Sbjct: 362 IGVIECNFLKPAYNKQDFEYTKEYRLTINALARKLNAYWKEKISQENFEPLPTSRRIPD 420

Mus musculus (taxid: 10090)
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
255540135816 zinc finger protein, putative [Ricinus c 0.918 0.812 0.677 0.0
297734460 830 unnamed protein product [Vitis vinifera] 0.919 0.8 0.652 0.0
224119746 862 predicted protein [Populus trichocarpa] 0.865 0.725 0.664 0.0
356527801820 PREDICTED: uncharacterized protein LOC10 0.879 0.774 0.625 0.0
449440961 824 PREDICTED: uncharacterized protein LOC10 0.777 0.680 0.696 0.0
359491569 2234 PREDICTED: uncharacterized protein LOC10 0.747 0.241 0.724 0.0
449501464794 PREDICTED: uncharacterized LOC101222073 0.777 0.706 0.696 0.0
356511518809 PREDICTED: uncharacterized protein LOC10 0.806 0.719 0.671 0.0
297803624709 hypothetical protein ARALYDRAFT_492340 [ 0.814 0.829 0.646 0.0
297792383804 hypothetical protein ARALYDRAFT_495140 [ 0.785 0.705 0.663 0.0
>gi|255540135|ref|XP_002511132.1| zinc finger protein, putative [Ricinus communis] gi|223550247|gb|EEF51734.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/701 (67%), Positives = 523/701 (74%), Gaps = 38/701 (5%)

Query: 1   MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAG-- 58
           M++ VKREI+ET  T    + NDSV       IELSSSS S+S S SD  +E   GA   
Sbjct: 1   MDIPVKREIVETFGTADSNRGNDSVLPGPPVLIELSSSSSSSSSSSSDSDSESDNGARFF 60

Query: 59  -DKSGRPNKRRKMPQDLEVVLPVGFLEPL---PAPERLPAAAGNDKAVSVGLQSCKQFWK 114
            +  G   K+RK+ ++L VVLPVGFL PL   PA   L    GND    +  QSCKQFWK
Sbjct: 61  PNGEGISKKKRKL-EELGVVLPVGFLAPLNQVPAEAMLTTVQGNDNVCLID-QSCKQFWK 118

Query: 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATY 174
           AGDYEGAP G W+ STGGMDHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEVC GATY
Sbjct: 119 AGDYEGAPCGDWDLSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVCYGATY 178

Query: 175 SNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234
            NIDML N KDGSRMLLIEDNGGGM+PDKMR CMSLGYSAKSK ANTIGQYGNGFKTSTM
Sbjct: 179 VNIDMLANWKDGSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTM 238

Query: 235 RLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRS 294
           RLGADVIVFS C GKDGKSPT+SIGLLSYTFLRSTGKEDIVVPMLDYE   QEW K+IRS
Sbjct: 239 RLGADVIVFSRCPGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGQEWNKMIRS 298

Query: 295 SLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKH 354
           S  DWNRNVETIVQWSPFSSEADLL QFNLM DHGTRI+IYNLWEDD+G LELDFD+D H
Sbjct: 299 SSGDWNRNVETIVQWSPFSSEADLLRQFNLMSDHGTRIVIYNLWEDDEGSLELDFDTDPH 358

Query: 355 DIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHH 414
           DIQLRGVNRDE+NI+MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RGKDVEHH
Sbjct: 359 DIQLRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGKDVEHH 418

Query: 415 NIVNDMMLSKKVTYRPQPGASGIPTDL---HMAVDVTIGFVKDAKHHIDVQGFNVYHKNR 471
           NIVNDMMLS+++TYRPQ  A G+  D    HMA  VTIGFVKDAKHHIDVQGFNVYHKNR
Sbjct: 419 NIVNDMMLSQEITYRPQ-SADGVAKDFNLNHMAAIVTIGFVKDAKHHIDVQGFNVYHKNR 477

Query: 472 LIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNN 531
           LIKPFWRLWNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARL+QMQK YW+ 
Sbjct: 478 LIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWST 537

Query: 532 NCHEIGYAPRRYKKYIKDSYD-------REISSK-KSYPSRHKITDSSHSDKHQLHSNQR 583
           NCH+IGYAPRR K++I +S D        ++SS+ K Y +      SS SDK   H+NQ 
Sbjct: 538 NCHKIGYAPRRNKRFINESTDGGSSPDYSQVSSQSKKYSALRGKGLSSLSDKFYSHANQN 597

Query: 584 WEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHV 643
             GK S    +  N     GH SS G    KT            P SPS  D  D+D H+
Sbjct: 598 -GGKRSDTFAKNGNPAYANGHVSSNGSDGTKTSTGSGRKTHSKAPSSPSLHDVDDNDAHI 656

Query: 644 MVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQ 684
            +  R                 +DGLH    S+ L D+  Q
Sbjct: 657 ALPTR-----------------QDGLHMVRLSSPLEDTTQQ 680

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734460|emb|CBI15707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119746|ref|XP_002318152.1| predicted protein [Populus trichocarpa] gi|222858825|gb|EEE96372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527801|ref|XP_003532495.1| PREDICTED: uncharacterized protein LOC100816702 [Glycine max] Back     alignment and taxonomy information
>gi|449440961|ref|XP_004138252.1| PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359491569|ref|XP_002280533.2| PREDICTED: uncharacterized protein LOC100266246 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449501464|ref|XP_004161374.1| PREDICTED: uncharacterized LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511518|ref|XP_003524472.1| PREDICTED: uncharacterized protein LOC100786679 [Glycine max] Back     alignment and taxonomy information
>gi|297803624|ref|XP_002869696.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] gi|297315532|gb|EFH45955.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297792383|ref|XP_002864076.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] gi|297309911|gb|EFH40335.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
TAIR|locus:2117358707 AT4G24970 [Arabidopsis thalian 0.670 0.684 0.746 5e-202
TAIR|locus:2163320819 AT5G50780 [Arabidopsis thalian 0.628 0.554 0.742 9.2e-194
TAIR|locus:2179837708 AT5G13130 [Arabidopsis thalian 0.606 0.618 0.644 8.6e-159
TAIR|locus:2122264635 CRT1 "compromised recognition 0.583 0.662 0.517 2.8e-114
TAIR|locus:2122254626 CRH1 "CRT1 Homologue 1" [Arabi 0.581 0.670 0.511 3.2e-113
TAIR|locus:2011226663 DMS11 "DEFECTIVE IN MERISTEM S 0.572 0.622 0.516 5.5e-109
TAIR|locus:2122244486 AT4G36270 "AT4G36270" [Arabido 0.445 0.662 0.446 7.2e-68
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.515 0.344 0.353 9e-53
ZFIN|ZDB-GENE-060929-544422 zgc:152774 "zgc:152774" [Danio 0.541 0.926 0.334 6.5e-51
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.313 0.296 0.361 4.8e-43
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1955 (693.3 bits), Expect = 5.0e-202, P = 5.0e-202
 Identities = 368/493 (74%), Positives = 415/493 (84%)

Query:   109 CKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEV 168
             CKQFWKAGDYEGA    W+ S+GG DHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEV
Sbjct:   135 CKQFWKAGDYEGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEV 194

Query:   169 CNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228
              +GATY  +DML N K G+RMLLIEDNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNG
Sbjct:   195 ASGATYVKVDMLENNKGGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKLANTIGQYGNG 254

Query:   229 FKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEW 288
             FKTSTMRLGADVIVFS C GKDGKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW
Sbjct:   255 FKTSTMRLGADVIVFSRCPGKDGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRDPEW 314

Query:   289 KKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELD 348
              KIIRSS  DW++NVETI+QWSPFSSE DLLHQF+LMKD GTRIIIYNLWEDDQG+LELD
Sbjct:   315 SKIIRSSTRDWDKNVETIIQWSPFSSEEDLLHQFDLMKDRGTRIIIYNLWEDDQGMLELD 374

Query:   349 FDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRG 408
             FD+D +DIQLRGVNR+E+NIKMA  +PNSRHFLTY+HSLRSY SILYLR+PPGFRII+RG
Sbjct:   375 FDADPYDIQLRGVNREERNIKMASQFPNSRHFLTYKHSLRSYVSILYLRIPPGFRIILRG 434

Query:   409 KDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYH 468
              DVEHH++VNDMM ++++TYRPQ  + G+ T+  M+  V IGFVKDAKHH+DVQGFNVYH
Sbjct:   435 IDVEHHSVVNDMMQTEQITYRPQSESYGVVTN--MSAIVIIGFVKDAKHHVDVQGFNVYH 492

Query:   469 KNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDY 528
             KNRLIKPFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLE+RL+QMQK Y
Sbjct:   493 KNRLIKPFWRIWNATGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRLVQMQKTY 552

Query:   529 WNNNCHEIGYAPRRYKK--YIKDSYDREISSKKSYPSRHKI----TDSSHSDKHQLHSNQ 582
             W+ NCH+IGYAPRR +K  Y  D+ D    + +  PS  K     +D  +S  +  H+  
Sbjct:   553 WSTNCHKIGYAPRRREKSAYGYDNRDSSPENDREGPSSIKTPTPASDKFYSSSYPNHNGD 612

Query:   583 RW-EGKDSKRLPE 594
                 GKD  RL E
Sbjct:   613 NGVSGKDGARLQE 625
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XII0998
hypothetical protein (862 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 5e-17
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 4e-05
COG3290537 COG3290, CitA, Signal transduction histidine kinas 2e-04
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 2e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 0.004
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSA 214
            A AEL+DNS+D     A  +N+ + I+   G   + IEDNGGGM+ +++R+ + LG S+
Sbjct: 5   DAIAELIDNSID-----ADATNVKISIDPDRGEDGISIEDNGGGMSYEELRNALKLGRSS 59

Query: 215 KSKA--ANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKE 272
           K     + T+G+ G G K +++ LG  + V S    K+G+S T ++       +   G+ 
Sbjct: 60  KEGERDSTTLGRKGIGMKLASLSLGRKLTVTS---KKEGESSTLTL---DLDDIDKEGEW 113

Query: 273 DIVVPMLD 280
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 722
KOG1845775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.85
PRK05218613 heat shock protein 90; Provisional 99.71
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.7
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.68
PRK14083601 HSP90 family protein; Provisional 99.58
PTZ00130 814 heat shock protein 90; Provisional 99.47
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 99.43
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.31
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.3
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.28
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 99.1
KOG0020785 consensus Endoplasmic reticulum glucose-regulated 99.02
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 98.88
KOG1979694 consensus DNA mismatch repair protein - MLH1 famil 98.61
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.49
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.33
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.32
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.29
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.28
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.26
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.19
KOG1978672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.13
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 98.04
PRK14867659 DNA topoisomerase VI subunit B; Provisional 98.02
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 97.98
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 97.89
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.75
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.74
COG3290537 CitA Signal transduction histidine kinase regulati 97.57
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.52
PLN03237 1465 DNA topoisomerase 2; Provisional 97.43
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.4
PRK10604433 sensor protein RstB; Provisional 97.29
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.19
PRK09470461 cpxA two-component sensor protein; Provisional 97.19
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.15
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.14
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.05
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.04
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.02
PRK09303380 adaptive-response sensory kinase; Validated 96.94
PRK10755356 sensor protein BasS/PmrB; Provisional 96.9
PRK10364457 sensor protein ZraS; Provisional 96.88
PRK09467435 envZ osmolarity sensor protein; Provisional 96.86
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.8
PRK11100475 sensory histidine kinase CreC; Provisional 96.76
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.65
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.65
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 96.51
PRK11086542 sensory histidine kinase DcuS; Provisional 96.47
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.44
PRK13837828 two-component VirA-like sensor kinase; Provisional 96.38
PRK09835482 sensor kinase CusS; Provisional 96.38
PRK10815485 sensor protein PhoQ; Provisional 96.36
PRK11360607 sensory histidine kinase AtoS; Provisional 96.34
PTZ00109 903 DNA gyrase subunit b; Provisional 96.27
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 96.25
PRK10337449 sensor protein QseC; Provisional 96.18
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 95.92
PRK15347921 two component system sensor kinase SsrA; Provision 95.92
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.83
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 95.75
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 95.74
COG4191603 Signal transduction histidine kinase regulating C4 95.67
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 95.55
PLN03128 1135 DNA topoisomerase 2; Provisional 95.53
PRK10841924 hybrid sensory kinase in two-component regulatory 95.48
PRK10490895 sensor protein KdpD; Provisional 95.48
PRK10618894 phosphotransfer intermediate protein in two-compon 95.38
PRK04069161 serine-protein kinase RsbW; Provisional 95.24
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.22
PRK10547670 chemotaxis protein CheA; Provisional 95.14
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.0
PRK13557540 histidine kinase; Provisional 94.89
PRK099591197 hybrid sensory histidine kinase in two-component r 94.83
COG4585365 Signal transduction histidine kinase [Signal trans 94.45
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 94.07
PRK03660146 anti-sigma F factor; Provisional 93.86
COG0643716 CheA Chemotaxis protein histidine kinase and relat 92.55
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 92.4
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 92.35
PRK11644495 sensory histidine kinase UhpB; Provisional 92.12
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 91.95
COG2972456 Predicted signal transduction protein with a C-ter 91.59
COG4192673 Signal transduction histidine kinase regulating ph 90.99
PRK13560807 hypothetical protein; Provisional 90.15
COG5000712 NtrY Signal transduction histidine kinase involved 88.96
COG3850574 NarQ Signal transduction histidine kinase, nitrate 88.55
COG3920221 Signal transduction histidine kinase [Signal trans 88.06
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 87.83
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 85.09
PRK13559361 hypothetical protein; Provisional 83.03
COG5002459 VicK Signal transduction histidine kinase [Signal 82.74
COG3851497 UhpB Signal transduction histidine kinase, glucose 80.45
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-59  Score=533.46  Aligned_cols=447  Identities=51%  Similarity=0.776  Sum_probs=393.7

Q ss_pred             cccccCCCCcCCCCCCCCCCCCCCCCccccccchhhhhhhcccCCCCCCCCCccccCCCcceeeecchhhhcccccccCH
Q 004945           74 LEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWA  153 (722)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~~~~~~v~p~fLhSnstsh~~~  153 (722)
                      -++++|---+.|-++++.++    .. ++++..-.||||||||+|..++..+.....++.+|+.+||+|||+|+|+|+|.
T Consensus        73 ~~vvvP~~t~~~~~~~~~~~----k~-~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a  147 (775)
T KOG1845|consen   73 DAVVVPCPTFNPRTREIVTE----KF-AFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWA  147 (775)
T ss_pred             ccceeccccccccccccccc----cc-ccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccc
Confidence            34456655555544444331    22 44677889999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcCCceeEEEEEEccCCC-ceeEEEE-----EcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004945          154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN  227 (722)
Q Consensus       154 fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g-~~~I~I~-----DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGv  227 (722)
                      ++|++||||||+|.+.++|+.+.|+.+....+. ...++|.     |||+||.++-+..||.+|++.|.....++|+||+
T Consensus       148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~  227 (775)
T KOG1845|consen  148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGN  227 (775)
T ss_pred             cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhcc
Confidence            999999999999999999999988876554443 5556666     7799999999999999999998766789999999


Q ss_pred             cccccccccCCeEEEEeeecCCCCCCCceeEeeechhhcccCCCcceeeec----ccccchhhHHHHHhhccchhhhhhh
Q 004945          228 GFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNV  303 (722)
Q Consensus       228 GfKsAsmrLG~~v~V~SR~~g~~G~~~t~SiglLS~Tfl~~~~~ddIvVPm----~dye~~~~~w~~~i~~~~~dw~~nL  303 (722)
                      |||++.|++|.+++|++|..+.+|.+.+++||+|||+||+.++.++++|||    .+|+...+.|..+++.+..+|..|+
T Consensus       228 gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~  307 (775)
T KOG1845|consen  228 GFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNL  307 (775)
T ss_pred             ccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceee
Confidence            999999999999999999877788999999999999999999999999999    9999988999999888899999999


Q ss_pred             Hh-----hhccCCCCChHHHHHH---------------hhccCCCeeEEEEecc--ccccCCceeecCCCCcccccccCC
Q 004945          304 ET-----IVQWSPFSSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGV  361 (722)
Q Consensus       304 ~~-----Il~ySPf~sE~eLl~q---------------f~~Ig~~GT~III~NL--w~~~dG~~ELDFdtD~~DI~i~g~  361 (722)
                      .+     +++|+||.++.+++.|               ++.+..+||.||+||+  |+++.|.+|+||+.+.++|..   
T Consensus       308 ~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~---  384 (775)
T KOG1845|consen  308 EIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW---  384 (775)
T ss_pred             eeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc---
Confidence            98     9999999999999988               8888999999999999  999999999999999887741   


Q ss_pred             CchhhhhhhhccCCCCchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccccCcCCCCCCCCCCCc
Q 004945          362 NRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDL  441 (722)
Q Consensus       362 ~~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLr~pprfkI~LnGk~Vep~~i~~dl~~~e~~~YkP~~~~~~lP~~~  441 (722)
                                          .+.++++.|.++||.+++.+|++++.|+++.|+.+..+.+..+...|+|+......+ ..
T Consensus       385 --------------------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~  443 (775)
T KOG1845|consen  385 --------------------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QR  443 (775)
T ss_pred             --------------------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-ch
Confidence                                345788999999999999999999999999999999999888888999985432211 11


Q ss_pred             cceeeEEeecccCcccccccCceEEEecCccch----hhhcccccCCCCCcceeeeeeccccCCCCcccchhhHHHHHHH
Q 004945          442 HMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARL  517 (722)
Q Consensus       442 ~~~~~itiGfl~~~~~~~~~qGf~VYh~nRLIk----~f~~Vw~~~~s~GrGVIGVleanflePtHnKQdFe~t~~l~rL  517 (722)
                      .+......||.+..++++++++|+|||++|||.    +||+.|+..++.++++++++.+||.+|+|++|+|+.+...++.
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~  523 (775)
T KOG1845|consen  444 LIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASS  523 (775)
T ss_pred             hhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccc
Confidence            334455788999888999999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccccCcccccccc
Q 004945          518 EARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD  549 (722)
Q Consensus       518 ~~~L~~~ld~YW~~~~~kiGy~~~~~~~~~~~  549 (722)
                      +..+.++++.||...|++|+|.........+.
T Consensus       524 es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~  555 (775)
T KOG1845|consen  524 ESRDKQSLNTYEEKKCLRIDEAGRQLQKERES  555 (775)
T ss_pred             hhhhhhcccccccccccccCccchhhhhhhcc
Confidence            99999999999999999999998776665544

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 9e-05
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 71/460 (15%), Positives = 139/460 (30%), Gaps = 150/460 (32%)

Query: 223 GQYGNGFKTSTMRLGADV----------------IVFSCCCGKDGKSPTRSIGLLSYTFL 266
           G  G+G KT    +  DV                +    C      SP   + +L     
Sbjct: 157 GVLGSG-KTW---VALDVCLSYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQKLLY 207

Query: 267 R-----STGKEDIVVPMLDYEGSQQEWKKIIRSS--------LDD-WNRNVETIVQWSPF 312
           +     ++  +      L     Q E +++++S         L +  N        W+ F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAF 262

Query: 313 ------------SSEADLL---HQFNLMKDHGTRIIIYNLWEDD-QGLLELDFDSDKHDI 356
                           D L      ++  DH +      L  D+ + LL    D    D+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQDL 318

Query: 357 --QLRGVN-----------RDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFR 403
             ++   N           RD         + N +H    + +    +S+  L  P  +R
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLE-PAEYR 372

Query: 404 ------IIIRGKDVEHHNI----------------VNDMM--LSKK--VTYRPQPGASGI 437
                  +         +I                V  ++  L K   V  +P+     I
Sbjct: 373 KMFDRLSVFP-PSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 438 PTDLHMAVDVTIGFVKDAKHH---ID-VQGFNVYHKNRLIKPFWRLWNASGSDG--RGVI 491
           P  +++  ++ +    +   H   +D       +  + LI P+         D      I
Sbjct: 429 P-SIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--------DQYFYSHI 477

Query: 492 GV-LEANFVEPAHDKQGFERTTV-LARLEARLIQMQKDYWN------NNCHEIGYAPRRY 543
           G  L+   +E       F    +    LE ++       WN      N   ++    + Y
Sbjct: 478 GHHLKN--IEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQL----KFY 530

Query: 544 KKYIKDS---YDREISSKKSYPSRH--KITDSSHSDKHQL 578
           K YI D+   Y+R +++   +  +    +  S ++D  ++
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.66
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.65
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.63
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.57
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.56
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.56
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.53
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.53
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.52
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.51
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.51
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.49
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 99.48
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.46
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.45
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.33
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.01
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.97
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.91
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.88
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 98.86
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.59
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.58
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 98.55
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.25
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 98.23
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.17
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.14
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.08
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.05
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 97.73
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.71
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 97.71
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 97.69
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.63
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 97.62
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.58
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.56
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.56
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 97.54
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.52
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 97.51
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.47
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.39
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.37
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.35
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.35
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.3
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 97.26
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 97.2
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.11
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 97.03
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 97.01
3zxo_A129 Redox sensor histidine kinase response regulator; 96.91
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 96.38
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 95.21
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 93.82
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 89.13
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 88.88
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
Probab=99.66  E-value=1.1e-16  Score=180.23  Aligned_cols=112  Identities=26%  Similarity=0.420  Sum_probs=85.1

Q ss_pred             ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEEE
Q 004945          126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLLI  192 (722)
Q Consensus       126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~I  192 (722)
                      |+++..++.++.+|.-|      ++.  ..+|+|||+||+||.+             ..+..+.|.|..+.  +...|+|
T Consensus         9 Fqaei~~Ll~ll~~~lY------sn~--~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I   78 (559)
T 1y4s_A            9 FQSEVKQLLHLMIHSLY------SNK--EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTI   78 (559)
T ss_dssp             CCTTHHHHHHHHHHHTG------GGT--THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEE
T ss_pred             eeecHHHHHHHHHHhcC------CCh--HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEE
Confidence            67777777777766655      233  4679999999999972             12555667766654  3478999


Q ss_pred             EEcCCCCCHHHHHhhh-hccccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945          193 EDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG  248 (722)
Q Consensus       193 ~DNG~GMs~eeL~~~l-~~G~SsK~-----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g  248 (722)
                      .|||+||++++|.++| .+|+|.+.           .+...||+||+||++++| +|++|+|.||+.+
T Consensus        79 ~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~  145 (559)
T 1y4s_A           79 SDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAG  145 (559)
T ss_dssp             EECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSS
T ss_pred             EECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCC
Confidence            9999999999999876 48887642           134689999999997665 9999999999875
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 722
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 5e-04
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 5e-04
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 0.003
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 156 AFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215
              EL++NSLD    GAT   ID+ I  + G++++ I DNG G+  D++   ++   ++K
Sbjct: 28  VVKELVENSLDA---GAT--RIDIDI-ERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 216 SKAANTIGQY----GNGFKTSTMRLGADVIVFSCCCGKDG 251
             + + +         G   +++   + + + S    +  
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 121
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.64
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.63
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.57
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.37
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.19
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.09
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.25
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.0
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.91
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.82
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.8
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.77
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.71
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.59
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.45
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.37
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.27
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 96.96
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.86
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 96.62
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-17  Score=162.21  Aligned_cols=112  Identities=22%  Similarity=0.359  Sum_probs=90.8

Q ss_pred             ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945          126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI  192 (722)
Q Consensus       126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I  192 (722)
                      |++++.+|.++.+|.-|      ++.++|  |+|||+||.||+..             ......|.|..++  +..+|.|
T Consensus         6 Fq~e~~~ll~ll~~slY------s~~~if--lRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~--~~~~l~I   75 (208)
T d1uyla_           6 FQAEIAQLMSLIINTFY------SNKEIF--LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTI   75 (208)
T ss_dssp             CCHHHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEE
T ss_pred             ehHHHHHHHHHHHHhhc------CCchHh--HHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEeecC--CccEEEE
Confidence            77888888888888877      677777  99999999999741             1224456666665  5789999


Q ss_pred             EEcCCCCCHHHHHhhhh-ccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945          193 EDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG  248 (722)
Q Consensus       193 ~DNG~GMs~eeL~~~l~-~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g  248 (722)
                      .|||.||+.++|.+.|. +|.|.+.         .+...|||||+||++++| ++++|.|.||+.+
T Consensus        76 ~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~  140 (208)
T d1uyla_          76 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND  140 (208)
T ss_dssp             EECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred             EcCCccccHHHHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCC
Confidence            99999999999998875 8887643         234679999999999988 9999999999765
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure