Citrus Sinensis ID: 004947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--
MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVIS
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHccccccccccHHHcccccccccccccccccccHHcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEEEcccccccccccccEEEEEccccccccHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEEcEEcccccccEEEccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEcccHHHHHHHHHccHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccEEcccHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHccHHHHHHHHHcccccHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHcccEEEEEEEEEcccccccccccEEEEEEcccccccHHHHHHHHccHHHcccccccccHHHHcccccccEEEEEccccEEEEEEEEEcccccccEEEEEEEcccccEEEEEcccccccc
mlepreadvPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRveavpsvsvsplvptsinefhvstsknefnvptlknefpastskngfqlcarcfapattrcsrcksvrycsgkcqiiHWRQVHKQECQQlektsssspslagsvddsvNESLNLQLSgynnkqggmgeappdgvihpsmsrcasssmdcstlensqtsmmerTVDKRVYRKSKKDLLRRDVATMFDSHDEIlrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsngyrsrhwniseprnscesssssnsakygtytreneldftsNGKKFLNESIELNgycemkamnpmgtkncksaksctkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvVSKMGIMKMMGlrkstklrqdsseLWHDQHRKLKMLFPYEEFLKLFQYEVIDllsprgllncgnscyaNAVLQCLTCTKPLVIYLLRrshssaccgkdwclMCELEQHVMMLResagplspgrilsHMRSiscqigdgsqEDAHEFLRLLVASMQSIClerhggeskvdprlqeTTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALtqftspedldgenmykcarcATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVIS
mlepreadvpVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLensqtsmmertvdkrvyrkskkdllrrdvatmfdshdeilrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsnGYRSRHWNiseprnscesssssnsaKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvvskmGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERhggeskvdprLQETTFiqhtfggrlwskVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFtspedldgenMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVIS
MLEPREADvpvlflvlvvlplvayvllGKWSEAAKKRERISllaqlaaeealRVEAvpsvsvsplvptsINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIseprnscesssssnsAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPlyvtllllpilllSGFAVIS
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHV********V************KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHK**********************************************************************************************************************************************************************************************************************KFLNESIELNGYCEMK******************************************************************************LWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRE********RILSHMRSISCQIGD***EDAHEFLRLLVASMQSICLERHGGE*KVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVI*
***PREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPT*************FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVH**************************************************************************************************************************************************************************************************************************************************************************************************************************************FLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH*********CLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQS*******************TFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFA***
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ********************DSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMS***************QTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSN******************************LNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIS****************YGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVIS
*****EADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSIN**H**********PTL**********NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ*********************************************************************************************************************************************************************************************************************************************************************************************************************HRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLS******
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
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MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPILLLSGFAVIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query722 2.2.26 [Sep-21-2011]
Q9FPS9 924 Ubiquitin carboxyl-termin yes no 0.857 0.669 0.512 1e-176
Q67XW5 631 Ubiquitin carboxyl-termin no no 0.326 0.374 0.531 2e-71
Q9SJA1 672 Ubiquitin carboxyl-termin no no 0.423 0.455 0.442 9e-71
Q9SB51 1008 Ubiquitin carboxyl-termin no no 0.538 0.385 0.356 2e-64
Q9FKP5 731 Ubiquitin carboxyl-termin no no 0.321 0.317 0.531 6e-64
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.354 0.193 0.392 2e-49
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.354 0.193 0.392 3e-49
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.354 0.193 0.388 4e-49
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.354 0.192 0.388 5e-49
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.317 0.204 0.388 3e-40
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function desciption
 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 375/731 (51%), Positives = 450/731 (61%), Gaps = 112/731 (15%)

Query: 1   MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSV 60
           MLEPR AD+P+LFLVLVVLP+VAY+LLGKWS  ++KR R +LLAQ+AAEEALR E V + 
Sbjct: 1   MLEPRGADIPILFLVLVVLPVVAYILLGKWSNISEKRVRANLLAQMAAEEALRAETVVNA 60

Query: 61  ---------------------SVSPLVPTSINEFH------VSTSKNEFNVPTLKNEFPA 93
                                +VS        EF       V+  +++    T      A
Sbjct: 61  DRGVRFESVATENRAQRTRTKTVSAGGGAVRAEFDAGARETVAEQRSDSVTATCGVTVVA 120

Query: 94  STSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSL 153
             + N   +CARCF PA TRCSRCKSVRYCSGKCQIIHWR  HK EC  +E  SSSS  +
Sbjct: 121 PVNNNELHVCARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSERV 180

Query: 154 AGSVDDSV-NESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSM 212
           +   D  + +  ++  +   N  Q   G+     V   S+     S  D +   N+Q   
Sbjct: 181 SFEKDSVLYDHGMDSTMYSNNTTQAAKGKTSKSSVDFASL---GISQNDITPQINTQG-- 235

Query: 213 MERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTG 272
             ++V K+   K+ ++  RRD AT+FDS DE          +S    +K + I+HKSR  
Sbjct: 236 -RKSVGKQHSSKANRESCRRDSATVFDSSDEA---------ASAGGDNKTSHIKHKSR-- 283

Query: 273 ASAVSSEESQRNLNLNSS----DGCAYGQGTTGSTTYDSN-GYRSRHW--NISEPRNSCE 325
            ++ ++E + R  +++SS    +G ++  G   S  +++N G RS     N   P N   
Sbjct: 284 GNSYAAETNPRRHSVDSSAVQMNGQSFVSGMQESHKHENNLGVRSSFGCPNTQYPSN--- 340

Query: 326 SSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTK 385
                                                          GT+     ++   
Sbjct: 341 -----------------------------------------------GTRTATLPRTGIN 353

Query: 386 VVGDQSCLEKERKGPIADESKAARVRDT-IPAQGSNVVSKMGIMKMMGLRKSTKLRQDSS 444
             G+QSC E  +KG +A  SK  R +DT I  + + + S MGIMKMMGLR STK      
Sbjct: 354 KSGEQSCTETSKKGQVAAVSKTVRSKDTGISEESNGISSTMGIMKMMGLRNSTK------ 407

Query: 445 ELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVI 504
               D+++ LKMLFPYEEFLK FQ EV DL SPRGL+NCGNSCYANAVLQ LTCTKPLV 
Sbjct: 408 --HDDRYKNLKMLFPYEEFLKFFQCEVFDL-SPRGLVNCGNSCYANAVLQSLTCTKPLVA 464

Query: 505 YLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDA 564
           YLLRRSHS +C GKDWCLMCELEQHVMMLRES GPLS  RILSHMRSI+CQIGDGSQEDA
Sbjct: 465 YLLRRSHSRSCSGKDWCLMCELEQHVMMLRESGGPLSASRILSHMRSINCQIGDGSQEDA 524

Query: 565 HEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYE 624
           HEFLRLLVASMQSICLER GGE+KVDPRLQETT +QH FGGRL SKVKCLRC HESERYE
Sbjct: 525 HEFLRLLVASMQSICLERLGGETKVDPRLQETTLVQHMFGGRLRSKVKCLRCDHESERYE 584

Query: 625 NIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILT 684
           NIMDLTLEIYGWVESL+DALTQFT PEDLDGENMY+C+RCA YVRARK+LSIHEAPNILT
Sbjct: 585 NIMDLTLEIYGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILT 644

Query: 685 IVLKRFQVSCY 695
           IVLKRFQ   Y
Sbjct: 645 IVLKRFQEGRY 655
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function description
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
296086860 894 unnamed protein product [Vitis vinifera] 0.824 0.665 0.576 0.0
147832982 945 hypothetical protein VITISV_035043 [Viti 0.861 0.658 0.532 0.0
357451869 983 Ubiquitin carboxyl-terminal hydrolase [M 0.943 0.692 0.528 0.0
356556906 989 PREDICTED: ubiquitin carboxyl-terminal h 0.909 0.664 0.548 1e-179
297850108 926 ubiquitin-specific protease 15 [Arabidop 0.896 0.698 0.505 1e-178
356546765 990 PREDICTED: ubiquitin carboxyl-terminal h 0.909 0.663 0.541 1e-176
18394440 924 ubiquitin carboxyl-terminal hydrolase 15 0.857 0.669 0.512 1e-174
334182643 928 ubiquitin carboxyl-terminal hydrolase 15 0.857 0.667 0.510 1e-173
11993475 924 ubiquitin-specific protease 15 [Arabidop 0.857 0.669 0.510 1e-172
115445271 975 Os02g0244300 [Oryza sativa Japonica Grou 0.869 0.644 0.441 1e-147
>gi|296086860|emb|CBI33027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/630 (57%), Positives = 445/630 (70%), Gaps = 35/630 (5%)

Query: 93  ASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPS 152
            S+SK+G   CARCF PATTRCSRCKSVRYCSGKCQIIHWRQVHK+ECQQLE  SS +  
Sbjct: 4   VSSSKSGNHECARCFGPATTRCSRCKSVRYCSGKCQIIHWRQVHKEECQQLETHSSITSL 63

Query: 153 LAGSVDDSV------NESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLE 206
              ++++SV      N+S+N Q  G   KQ  + +A  + +I+PS S    ++  CS+++
Sbjct: 64  KDAAIEESVHERVSVNDSMNSQFYGSGIKQTVLEKASGN-IINPSFSTGMPATNACSSID 122

Query: 207 NSQTSMMER-TVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPI 265
            S+ +MMER T DK V RKS +++L+++   +  S +E+  S  +   SS++ S KEA  
Sbjct: 123 TSRITMMERRTGDKWVSRKSSREILKKEDVAICGSTEEVSTSSNTSITSSDDISLKEAYT 182

Query: 266 RHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCE 325
           R K     S VS EE  +  N ++    A+ +G T S+ ++ +  ++++ N+ EPR++  
Sbjct: 183 RQKLGNCDSVVSEEEMYKKYNFSAPT--AFARGHTSSSMHERHKLQNQNGNVFEPRSN-Y 239

Query: 326 SSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELN----------GYCEMK-------A 368
             SSS S K GT   E E D  S G     E I  N          G   +K       A
Sbjct: 240 GISSSCSEKNGTNGCEIERDHISCGGNLHREGITANDETGEPNCSPGITSIKRSGKSKTA 299

Query: 369 MNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIP--AQGSNVVSKMG 426
           ++ +GTK  KS K+  K+  +++C E ERKG  A+   A R+ D+ P  A G+N V+ MG
Sbjct: 300 LHTLGTKTTKSPKASMKLSREETCSEIERKGQTAE---ATRMSDSTPILAPGNNEVTSMG 356

Query: 427 IMKMMGLRKSTKL-RQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGN 485
            MKMMGLRK  K  +QD+SE   D H+K+KMLFPYEEF++ FQ EV ++ SPRGLLNCGN
Sbjct: 357 FMKMMGLRKPLKPPKQDASEESSDIHKKIKMLFPYEEFVRFFQCEVFNI-SPRGLLNCGN 415

Query: 486 SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRI 545
           SCYANAVLQCLTCTKPL+IYLL+RSHS  CC  +WCLMCELE+HVMMLRES GPLSP RI
Sbjct: 416 SCYANAVLQCLTCTKPLIIYLLQRSHSRTCCVTNWCLMCELEKHVMMLRESGGPLSPSRI 475

Query: 546 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGG 605
           LSHMRSI+CQIGDGSQEDAHEFLRLLV SMQSICLE+ GGE +VD RLQETTFIQHTFGG
Sbjct: 476 LSHMRSINCQIGDGSQEDAHEFLRLLVTSMQSICLEKLGGEREVDARLQETTFIQHTFGG 535

Query: 606 RLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCA 665
           RL SKVKCLRC  ESERYENIMDLTLEI+GWVESLEDALTQFT+PEDLDGENMY+C RC 
Sbjct: 536 RLRSKVKCLRCHLESERYENIMDLTLEIFGWVESLEDALTQFTTPEDLDGENMYRCRRCT 595

Query: 666 TYVRARKQLSIHEAPNILTIVLKRFQVSCY 695
           TYVRARKQLSIHEAPNILTIVLKRFQ   Y
Sbjct: 596 TYVRARKQLSIHEAPNILTIVLKRFQEGRY 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147832982|emb|CAN68406.1| hypothetical protein VITISV_035043 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357451869|ref|XP_003596211.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485259|gb|AES66462.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356556906|ref|XP_003546761.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|297850108|ref|XP_002892935.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] gi|297338777|gb|EFH69194.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356546765|ref|XP_003541793.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|18394440|ref|NP_564014.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|166201354|sp|Q9FPS9.2|UBP15_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName: Full=Deubiquitinating enzyme 15; Short=AtUBP15; AltName: Full=Ubiquitin thioesterase 15; AltName: Full=Ubiquitin-specific-processing protease 15 gi|332191421|gb|AEE29542.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182643|ref|NP_001185019.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|332191422|gb|AEE29543.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11993475|gb|AAG42756.1|AF302665_1 ubiquitin-specific protease 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115445271|ref|NP_001046415.1| Os02g0244300 [Oryza sativa Japonica Group] gi|113535946|dbj|BAF08329.1| Os02g0244300 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query722
TAIR|locus:2121959 1008 UBP16 "ubiquitin-specific prot 0.419 0.300 0.423 5.2e-79
TAIR|locus:2124809 631 UBP18 "AT4G31670" [Arabidopsis 0.332 0.380 0.526 1.5e-77
TAIR|locus:2168282 731 UBP17 "AT5G65450" [Arabidopsis 0.365 0.361 0.491 4.1e-77
TAIR|locus:2046678 672 UBP19 "AT2G24640" [Arabidopsis 0.427 0.459 0.443 2.4e-67
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.315 0.172 0.436 4.6e-47
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.315 0.172 0.436 4.7e-47
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.315 0.172 0.432 5.9e-47
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.315 0.171 0.432 6.1e-47
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.315 0.171 0.432 6.1e-47
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.286 0.197 0.436 1.8e-42
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 616 (221.9 bits), Expect = 5.2e-79, Sum P(3) = 5.2e-79
 Identities = 133/314 (42%), Positives = 187/314 (59%)

Query:   384 TKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKST-KL--- 439
             +K    + C +  +  P+   +K+ RV D     G+ V     +    GL+ S  K+   
Sbjct:   447 SKASNTKKCADLMKHSPLG--AKSVRVLDHQKQNGAVVQHINSLHGRSGLKASVLKVVDQ 504

Query:   440 --RQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLT 497
               R  S      +H   K LFPYE F KL+ Y++     P GL+N GNSC+AN V QCL 
Sbjct:   505 WTRPKSENEMAGRHGH-KGLFPYEVFAKLYTYKIE--FQPCGLINVGNSCFANVVFQCLM 561

Query:   498 CTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557
              T PL  Y L++ HS AC  K+ C  C  E+ V+  +E   PLSP  +LS +++I   +G
Sbjct:   562 FTPPLTTYFLQQFHSRACTKKEQCFTCGFEKLVVKAKEEKSPLSPNGLLSQLQNIGIFLG 621

Query:   558 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS 617
             +G +EDAHEFLR +V +MQS+C++    +     +L++TT I  TFGG L SK+KC++C 
Sbjct:   622 NGKEEDAHEFLRFVVDTMQSVCIKASEYDMTKSSKLEDTTLIGLTFGGYLRSKIKCMKCQ 681

Query:   618 HESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIH 677
              +SE  E +MDLT+EI G + +L+DAL +FT  E LDGEN Y+C  C +Y RA+K+L I 
Sbjct:   682 VKSELREKMMDLTVEIDGDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKIT 741

Query:   678 EAPNILTIVLKRFQ 691
             E PN+LTI LKRFQ
Sbjct:   742 EPPNVLTIALKRFQ 755
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008283 "cell proliferation" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0048364 "root development" evidence=IGI
GO:0048366 "leaf development" evidence=IGI
GO:0048367 "shoot system development" evidence=IGI
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS9UBP15_ARATH3, ., 4, ., 1, 9, ., 1, 20.51290.85730.6699yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009171001
SubName- Full=Chromosome undetermined scaffold_223, whole genome shotgun sequence; (912 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-110
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 4e-38
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 2e-37
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 5e-29
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 9e-29
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 8e-28
cd02664 327 cd02664, Peptidase_C19H, A subfamily of Peptidase 1e-25
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 8e-24
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 2e-22
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 5e-19
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 9e-19
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 2e-15
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 1e-12
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-11
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-11
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 1e-11
pfam0175339 pfam01753, zf-MYND, MYND finger 9e-11
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 7e-08
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 1e-06
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 2e-06
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-04
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 0.004
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  336 bits (865), Expect = e-110
 Identities = 119/216 (55%), Positives = 142/216 (65%), Gaps = 2/216 (0%)

Query: 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES 536
             GL N GN+C+ N+VLQCLT T PL  YLL R HS  CC + +C+MC LE HV     S
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 537 AGPLS-PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQE 595
           +GP S P    S+++ IS     G QEDAHEFLR L+ +MQ  CL+R      VDP  QE
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDG 655
           TT +Q  FGG L S+VKCL C H S  Y+  +DL+L+I G  +SLEDAL QFT PE LDG
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDG 179

Query: 656 ENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691
           EN YKC RC   V+A KQL+IH APN+LTI LKRF 
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFS 215

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 722
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02664 327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 99.98
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 99.96
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.96
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 99.95
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.94
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.94
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.93
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.93
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.93
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.92
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 99.91
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.9
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 99.89
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.88
KOG1870 842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.88
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.88
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.85
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.76
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.76
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.71
KOG1872 473 consensus Ubiquitin-specific protease [Posttransla 99.56
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.45
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.87
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.68
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.54
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.15
KOG3612588 consensus PHD Zn-finger protein [General function 96.56
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 94.44
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 93.55
PLN03158396 methionine aminopeptidase; Provisional 92.64
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 89.11
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 84.49
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 81.77
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3e-53  Score=468.01  Aligned_cols=305  Identities=22%  Similarity=0.257  Sum_probs=263.0

Q ss_pred             ccccccCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccc
Q 004947          363 YCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQD  442 (722)
Q Consensus       363 ~~~~~~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteks  442 (722)
                      |+++  .|||.||||||++.|+|||||.|++++                 .+| +...||+|||||    +..+.||+|+
T Consensus       220 Yr~t--ghPLaVKLgsIs~dg~DvycY~cDd~v-----------------~dP-nl~~hl~hfGId----~~~m~kteks  275 (763)
T KOG0944|consen  220 YRET--GHPLAVKLGSISPDGADVYCYDCDDEV-----------------RDP-NLESHLSHFGID----MAKMDKTEKS  275 (763)
T ss_pred             hhhc--CCceEEEecccCCCccceeeecccccc-----------------cCc-cHHHHHHhcCcc----HHHhccchhH
Confidence            5554  599999999999999999888887732                 244 899999999999    9999999999


Q ss_pred             hhhhhhhhcccceecccc---chhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcc--cCCcCCC
Q 004947          443 SSELWHDQHRKLKMLFPY---EEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS--HSSACCG  517 (722)
Q Consensus       443 l~El~~e~n~~~~~~f~~---~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~--~~~~~~~  517 (722)
                      ++||++++|..|+|.+..   ..+.|+|||      +++||+|+||+||||||||+|+++|.|...++...  ....+..
T Consensus       276 l~elel~~N~i~Ew~~~~esg~~l~p~~gp------gytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~  349 (763)
T KOG0944|consen  276 LVELELDQNRIWEWEALEESGAPLEPLFGP------GYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKD  349 (763)
T ss_pred             HHHHHHHhhcccCceeeccCCCccccccCC------CccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCC
Confidence            999999999888776654   346777776      46999999999999999999999999999887652  2344567


Q ss_pred             CcchHHHHHHHHHHHHHcC-----------CCCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCC
Q 004947          518 KDWCLMCELEQHVMMLRES-----------AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE  586 (722)
Q Consensus       518 ~~~~l~~qL~kL~~~L~s~-----------~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~  586 (722)
                      |..+|.|||.+|+.+|.++           .+.|+|.+|+..+++.|+.|++.+||||+|||++||+.|++-....    
T Consensus       350 P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~----  425 (763)
T KOG0944|consen  350 PTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS----  425 (763)
T ss_pred             cchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc----
Confidence            8899999999999999753           2479999999999999999999999999999999999998742111    


Q ss_pred             CCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC-----ccccHHHHHHhcCCCcccCCCCcccc
Q 004947          587 SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-----WVESLEDALTQFTSPEDLDGENMYKC  661 (722)
Q Consensus       587 ~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~-----~~~sLed~L~~~~~~E~ldg~nky~C  661 (722)
                               ...+.++|.|.++.+++|..|++++++++..+.|.|+||.     ..++|..||+.||.| .+++   |+|
T Consensus       426 ---------~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s  492 (763)
T KOG0944|consen  426 ---------LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWS  492 (763)
T ss_pred             ---------CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhh
Confidence                     1457899999999999999999999999999999999984     357999999999999 5555   999


Q ss_pred             CcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEecccccceeccc-cccCCce
Q 004947          662 ARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLP-ILLLSGF  718 (722)
Q Consensus       662 ~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~~~l~~P-ll~lS~f  718 (722)
                      ..|+.+..|+|+++|++||+|||||++||.+.+|.+.|+    +..+.+| .+++|.|
T Consensus       493 ~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKl----d~~iempe~ldls~~  546 (763)
T KOG0944|consen  493 TACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKL----DVSIEMPEELDLSSY  546 (763)
T ss_pred             HhhcCccccccccccccCCceEEEEeeEEEecCceeeee----ccceecchhhchhhh
Confidence            999999999999999999999999999999999998888    3444555 5566654

>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 7e-19
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 7e-19
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-18
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-16
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 1e-15
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-15
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-12
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 2e-12
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-12
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 7e-12
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 2e-11
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 5e-11
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 2e-09
2f1z_A 522 Crystal Structure Of Hausp Length = 522 1e-07
1nbf_A 353 Crystal Structure Of A Ubp-Family Deubiquitinating 4e-07
1nb8_A 353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 2e-06
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure 
Iteration: 1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 111/260 (42%), Gaps = 48/260 (18%)
Query: 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCL-MCELEQHV---MMLR 534
           GL N GN+C+ NAVLQCL+ T+PL  + LRR       G      + E    V   +   
Sbjct: 5   GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP 64
Query: 535 ESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLE------------- 581
           +S   ++P R  +  +         SQ+DA EFL+LL   M+ + LE             
Sbjct: 65  DSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLL---MERLHLEINRRGRRAPPILA 121
Query: 582 --------RHGGESKVDPRL---------------QETTFIQHTFGGRLWSKVKCLRCSH 618
                   R GG    +P L               +E + I   F G+L S +KC  C +
Sbjct: 122 NGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGY 181
Query: 619 ESERYENIMDLTLEI-----YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQ 673
            S  +E   DL+L I      G   SL D    FT  E+L+ EN   C RC    R+ K+
Sbjct: 182 RSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKK 241
Query: 674 LSIHEAPNILTIVLKRFQVS 693
           L++   P IL + L RF  S
Sbjct: 242 LTVQRFPRILVLHLNRFSAS 261
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query722
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-72
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 3e-67
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 7e-65
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-60
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 3e-57
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-55
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 3e-52
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 4e-48
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-23
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 9e-21
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 2e-14
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 3e-14
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 4e-14
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 9e-14
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 5e-05
3qww_A433 SET and MYND domain-containing protein 2; methyltr 9e-05
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  238 bits (609), Expect = 1e-72
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 26/240 (10%)

Query: 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC---GKDWCLMCELEQHV--MM 532
            GL N GN+C+ N++LQCL+ T+ L  Y L+R +             L+ E  + +  + 
Sbjct: 10  AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69

Query: 533 LRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICL------------ 580
                  +SP    + ++  + +    +Q+DA EFLR L+  + +               
Sbjct: 70  TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129

Query: 581 ------ERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI- 633
                 +  G +       +E + I   F G+L S + C  C + S  ++   DL+L I 
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189

Query: 634 --YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691
                  +L D +  FT  + LDG+    C RC    R  K+ SI   P IL + LKRF 
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 249
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.77
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 99.09
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 99.03
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 99.02
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.98
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.9
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.37
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.35
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.19
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 97.81
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 94.19
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 86.18
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-47  Score=459.43  Aligned_cols=298  Identities=18%  Similarity=0.173  Sum_probs=231.2

Q ss_pred             cCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccchhhhh
Q 004947          368 AMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELW  447 (722)
Q Consensus       368 ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteksl~El~  447 (722)
                      +.||+.||++++++.+++|+||-|.+.+.                 +| .+..||++|||+    +.++.||++++.||+
T Consensus       259 ~~H~~~~~l~t~~~~~~~~~cy~~~~~v~-----------------~~-~l~~~l~~~gi~----~~~~~kt~k~~~el~  316 (854)
T 3ihp_A          259 TGYPLAVKLGTITPDGADVYSYDEDDMVL-----------------DP-SLAEHLSHFGID----MLKMQKTDKTMTELE  316 (854)
T ss_dssp             HCCCEEEETTCCBTTBCCEEETTTTEECB-----------------CT-THHHHHHHTTCC----C--------------
T ss_pred             cCCcEEEEcCCcCCCCCeEEEccCCCeee-----------------Cc-cHHHHHHHhCcc----cccccccchhhhhhh
Confidence            46999999999999999999998877543                 23 678899999999    888999999999999


Q ss_pred             hhhcccc-eecc---ccchhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccC---CcCCCCcc
Q 004947          448 HDQHRKL-KMLF---PYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS---SACCGKDW  520 (722)
Q Consensus       448 ~e~n~~~-~~~f---~~~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~---~~~~~~~~  520 (722)
                      +++|.+| .+..   ....+.+.+++      +++||.|+|||||||||||+|+++|+|+++|+...+.   .....+..
T Consensus       317 ~~~n~~~g~~~~~~~~g~~l~p~~~~------G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~  390 (854)
T 3ihp_A          317 IDMNQRIGEWELIQESGVPLKPLFGP------GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQ  390 (854)
T ss_dssp             ---------------------CCCST------TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGG
T ss_pred             hhhccccchhhhhcccCcccccccCC------CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccc
Confidence            9999877 3322   12446677765      4599999999999999999999999999999753321   12345678


Q ss_pred             hHHHHHHHHHHHHHcC---------------------CCCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHH
Q 004947          521 CLMCELEQHVMMLRES---------------------AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSIC  579 (722)
Q Consensus       521 ~l~~qL~kL~~~L~s~---------------------~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~  579 (722)
                      ++.++|++|+..|+++                     ...++|..|+..++..++.|.+++||||+|||.+||+.|++++
T Consensus       391 ~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el  470 (854)
T 3ihp_A          391 DFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC  470 (854)
T ss_dssp             CHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHh
Confidence            9999999999999853                     3479999999999999999999999999999999999999864


Q ss_pred             HhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc-----------------------
Q 004947          580 LERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----------------------  636 (722)
Q Consensus       580 ~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-----------------------  636 (722)
                      .              ..++|.++|+|+++++++|..|+++++++++|++|+|+||..                       
T Consensus       471 ~--------------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~  536 (854)
T 3ihp_A          471 R--------------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKM  536 (854)
T ss_dssp             T--------------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTC
T ss_pred             c--------------ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccc
Confidence            1              135689999999999999999999999999999999999952                       


Q ss_pred             --------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc-CeE--eEEeccccc
Q 004947          637 --------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS-CYL--LMRVRPLYV  705 (722)
Q Consensus       637 --------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~-~~~--k~k~~v~f~  705 (722)
                              ..+|++||+.|+.+|.|+|   |+|++|+.++.+.|+.+|.++|+||+||||||.++ +|.  |+...|.||
T Consensus       537 ~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP  613 (854)
T 3ihp_A          537 ALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP  613 (854)
T ss_dssp             CCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC
T ss_pred             cccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecC
Confidence                    1599999999999999997   99999999999999999999999999999999995 454  555577777


Q ss_pred             ceecc
Q 004947          706 TLLLL  710 (722)
Q Consensus       706 ~~l~~  710 (722)
                      ..|++
T Consensus       614 ~~LDl  618 (854)
T 3ihp_A          614 EELDI  618 (854)
T ss_dssp             SEEEC
T ss_pred             CcEeh
Confidence            65554
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 722
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 5e-29
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-26
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-23
d2ayna1 383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 8e-23
d1nbfa_ 347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 8e-22
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 7e-12
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 1e-11
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 2e-11
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 5e-29
 Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMM 532
            GL N GN+CY N++LQCL     L  Y  R  +          G    +  E    +  
Sbjct: 16  TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKA 75

Query: 533 LRES-AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP 591
           L       +SP      +  I+ Q    SQ+D+ E L  L+  +     +    +   + 
Sbjct: 76  LWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEE 135

Query: 592 RLQ------------------ETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633
                                  + I   F G+  S V+CL C  +S  +E  M L+L +
Sbjct: 136 NNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL 195

Query: 634 YG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQV 692
                 +L+D L  F+  E L   N + C+ C     + K++ I + P +L + LKRF  
Sbjct: 196 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 693 SCY 695
              
Sbjct: 256 DGR 258
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query722
d1nbfa_ 347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1 383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 99.98
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 99.97
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 99.97
d1vjva_ 397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.94
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 99.24
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 99.18
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 99.17
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 96.41
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=317.59  Aligned_cols=220  Identities=22%  Similarity=0.313  Sum_probs=188.8

Q ss_pred             cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccc
Q 004947          475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC  554 (722)
Q Consensus       475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~  554 (722)
                      +|.+||.|+||||||||+||+|+++|+|+++++......  .....++.++|+++|..|+.+..++.|..++..+.  ..
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~--~~   79 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE   79 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT--CCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTT--CC
T ss_pred             CCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC--CcccchHHHHHHHHHHHHhcCCCCcChHHHHHhhc--hh
Confidence            678999999999999999999999999999998654332  34557899999999999998888999999887775  34


Q ss_pred             cCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeeccc
Q 004947          555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY  634 (722)
Q Consensus       555 ~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip  634 (722)
                      .|..+.||||+|||.+||+.|++++...           ...+.|.++|+|.+.+.++|..|++.+.+.|+|+.|+|+|+
T Consensus        80 ~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~  148 (347)
T d1nbfa_          80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK  148 (347)
T ss_dssp             GGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECT
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHhhc-----------cccccccceeceEEEEeEEeCCccceeeeeccccccccccc
Confidence            5888999999999999999999876321           22357899999999999999999999999999999999999


Q ss_pred             CccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC----eEeEEecccccceecc
Q 004947          635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC----YLLMRVRPLYVTLLLL  710 (722)
Q Consensus       635 ~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~k~k~~v~f~~~l~~  710 (722)
                      . ..+++++|..++.+|.+++++++.|..| +...+.|+..|.++|+||+|||+||.++.    ..|+...|.||..+++
T Consensus       149 ~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl  226 (347)
T d1nbfa_         149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL  226 (347)
T ss_dssp             T-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEEC
T ss_pred             c-ccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeecc
Confidence            6 6899999999999999999888777765 56789999999999999999999999853    2355557788877766


Q ss_pred             c
Q 004947          711 P  711 (722)
Q Consensus       711 P  711 (722)
                      .
T Consensus       227 ~  227 (347)
T d1nbfa_         227 D  227 (347)
T ss_dssp             G
T ss_pred             c
Confidence            4
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure