Citrus Sinensis ID: 004950

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--

MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR

ccccHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccc

ccHHHHHHHHHHHcHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHEEccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEc

MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATmkslsplkeeqRLHAGQILEVILTQIrydpmyrnnldvldkigiEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLlqtklpchsnrLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLdergihhpnvhvsRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMnyaskelsgsedgsHIFEAIGLLigmedvppekqsdylsslLTPLCQQVQTMLLdakmlnpeestaKFANIQQIIMAINALSKGFNerlvtssrpaigLMFKQTLDVLLQILVvfpkveplrcKVTSFIHRMVDtlgasvfpYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGrifniiprdafpsgpgtnteEIREVQELQRTLYTFLHVIAThdlssvflspksrgyldpIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDwcarpfveekvpgfQSFMIEAFAMNCCLysvldksfefgdantLVLFGEIVLAQKVMYEKFGNDFLVHFVtkgfpsahcppdlaeqYCQKLQGNDIKALKSFYQSLIEKLRVQqngslvfr

mdpqsklnllqTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKelsgsedgSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEklrvqqngslvfr

MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFaniqqiimainaLSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR

********LLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGE********TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA**********SHIFEAIGLLIGMEDV******DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFP********EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRV*********

**PQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNA*N**EASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVT*SADRNVEEVEAALTLLYALGESM***********LSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA***************EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV******************FANIQQIIMAINALSKGF*********PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAF*********EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKL***********

MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRN******KIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSM******LSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQ****VF*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		722	2.2.26 [Sep-21-2011]
Q7PC79		988	Exportin-T OS=Arabidopsis	yes	no	1.0	0.730	0.763	0.0
Q8H3A7		980	Exportin-T OS=Oryza sativ	yes	no	0.986	0.726	0.566	0.0
Q9CRT8		963	Exportin-T OS=Mus musculu	yes	no	0.959	0.719	0.271	4e-70
O43592		962	Exportin-T OS=Homo sapien	yes	no	0.959	0.720	0.265	2e-68
Q5RA02		962	Exportin-T OS=Pongo abeli	yes	no	0.959	0.720	0.264	8e-68
Q5SPJ8		961	Exportin-T OS=Danio rerio	yes	no	0.959	0.721	0.275	2e-65
O94258		978	Exportin-T OS=Schizosacch	yes	no	0.837	0.618	0.245	6e-50
Q5ASE3		1031	Exportin-T OS=Emericella	yes	no	0.951	0.666	0.249	8e-50
Q1DY99		1033	Exportin-T OS=Coccidioide	N/A	no	0.898	0.628	0.252	2e-48
Q0CIL3		1028	Exportin-T OS=Aspergillus	N/A	no	0.916	0.643	0.255	4e-48

>sp\|Q7PC79\|XPOT_ARATH Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1	Back alignment and function desciption

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/722 (76%), Positives = 634/722 (87%)

Query: 1   MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEA 60
           MDPQSKL LLQTLQISRVFGLVS D +S+LVSKV+ALLTGYA+EVL+C KRLN+E+    
Sbjct: 267 MDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSKVSALLTGYAVEVLECHKRLNSEDTKAV 326

Query: 61  SKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVIL 120
           S  LLNEVLPSVFYVMQ CEVD+TFSIVQFL GYV+T+K L  LKE+Q LH  QILEVI 
Sbjct: 327 SMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLGYVSTLKGLPALKEKQLLHITQILEVIR 386

Query: 121 TQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANA 180
            QI YDPMYRNNL+ LDK G+EEEDRM E+RKDL VLLR+VGRVAPEVTQ FIRNSLANA
Sbjct: 387 IQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKDLFVLLRTVGRVAPEVTQHFIRNSLANA 446

Query: 181 VTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVAL 240
           V  S++ NVEEVEAAL+LLY+ GESM+EEAM+TG+G LSEL+PMLL T+ P HS+RLVAL
Sbjct: 447 VESSSESNVEEVEAALSLLYSFGESMTEEAMKTGSGCLSELIPMLLTTQFPGHSHRLVAL 506

Query: 241 VYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300
           VYLE +TRYMKFIQE++QYIP VL AFLD+RG+HH N +VSRRA YLFMRVVKLLK+KLV
Sbjct: 507 VYLENITRYMKFIQENSQYIPNVLGAFLDDRGLHHQNFYVSRRAGYLFMRVVKLLKSKLV 566

Query: 301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSS 360
           PFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDGSHIFEAIG++IG+EDVP EKQSDYLS 
Sbjct: 567 PFIDKILQNLQDTLSQLTTMNFASRELTGTEDGSHIFEAIGIIIGLEDVPAEKQSDYLSL 626

Query: 361 LLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLM 420
           LLTPLCQQ++  L+ AK+ + E+   K ANIQ  I+AINALSKGFNERLVT+SRP IGLM
Sbjct: 627 LLTPLCQQIEAGLVQAKVASSEDFPVKIANIQFAIVAINALSKGFNERLVTASRPGIGLM 686

Query: 421 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM 480
           FKQTLDVLL++L+ FPKVEPLR KVTSFIHRMVDTLG++VFPYLPKALEQLLA+SEPKEM
Sbjct: 687 FKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMVDTLGSAVFPYLPKALEQLLADSEPKEM 746

Query: 481 AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQ 540
            GF+VLLNQLICKFN+ +HDIL+EV+P +A RIFN+IPRD  PS PG  TEE+RE+ ELQ
Sbjct: 747 VGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRDGLPSRPGAVTEEMRELIELQ 806

Query: 541 RTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 600
           R LYTFLHVIATHDLSSVFL+PKSR YLDP+MQL+L TSCNHKD  VRKACVQIFI+LIK
Sbjct: 807 RMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQLVLNTSCNHKDITVRKACVQIFIKLIK 866

Query: 601 DWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYE 660
           DWCA P+ EEKVPGFQ+F+IEAFA NCCLYSVLDKSF F DANT  LFGEI+ AQKVMYE
Sbjct: 867 DWCAEPYSEEKVPGFQNFVIEAFATNCCLYSVLDKSFNFSDANTHALFGEIITAQKVMYE 926

Query: 661 KFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLV 720
           KFGN FL+H ++K FPSAH P DLAEQYCQKLQGNDI++LKS+YQSLIE LR+QQNGS V
Sbjct: 927 KFGNTFLMHLMSKSFPSAHIPQDLAEQYCQKLQGNDIRSLKSYYQSLIENLRLQQNGSHV 986

Query: 721 FR 722
           FR
Sbjct: 987 FR 988

Probable tRNA nucleus export receptor which regulates tRNA processing and facilitates tRNA translocation across the nuclear pore complex. Is required for proper activity of the shoot apical meristem (SAM) and correct leaf initiation at different developmental stages, and may play a role in floral patterning.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8H3A7\|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica GN=Os07g0613300 PE=2 SV=1	Back alignment and function description

>sp\|Q9CRT8\|XPOT_MOUSE Exportin-T OS=Mus musculus GN=Xpot PE=2 SV=3	Back alignment and function description

>sp\|O43592\|XPOT_HUMAN Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	Back alignment and function description

>sp\|Q5RA02\|XPOT_PONAB Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1	Back alignment and function description

>sp\|Q5SPJ8\|XPOT_DANRE Exportin-T OS=Danio rerio GN=xpot PE=3 SV=1	Back alignment and function description

>sp\|O94258\|XPOT_SCHPO Exportin-T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=los1 PE=1 SV=1	Back alignment and function description

>sp\|Q5ASE3\|XPOT_EMENI Exportin-T OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=los1 PE=3 SV=1	Back alignment and function description

>sp\|Q1DY99\|XPOT_COCIM Exportin-T OS=Coccidioides immitis (strain RS) GN=LOS1 PE=3 SV=1	Back alignment and function description

>sp\|Q0CIL3\|XPOT_ASPTN Exportin-T OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=los1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
255560611		988	Exportin-T, putative [Ricinus communis]	0.998	0.729	0.828	0.0
225442110		992	PREDICTED: exportin-T [Vitis vinifera] g	1.0	0.727	0.804	0.0
449447900		990	PREDICTED: exportin-T-like [Cucumis sati	1.0	0.729	0.799	0.0
224073696		994	predicted protein [Populus trichocarpa]	1.0	0.726	0.773	0.0
356506134		986	PREDICTED: exportin-T-like [Glycine max]	0.998	0.731	0.791	0.0
356573302		983	PREDICTED: exportin-T-like [Glycine max]	0.995	0.731	0.788	0.0
30909319		988	PAUSED [Arabidopsis thaliana]	1.0	0.730	0.764	0.0
42563175		988	protein PAUSED [Arabidopsis thaliana] gi	1.0	0.730	0.763	0.0
297842005		978	hypothetical protein ARALYDRAFT_476390 [	0.986	0.728	0.734	0.0
224119496		941	predicted protein [Populus trichocarpa]	0.929	0.713	0.747	0.0

>gi\|255560611\|ref\|XP_002521319.1\| Exportin-T, putative [Ricinus communis] gi\|223539397\|gb\|EEF40987.1\| Exportin-T, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1251 bits (3238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/722 (82%), Positives = 665/722 (92%), Gaps = 1/722 (0%)

Query: 1   MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEA 60
           MDPQSKL +L++LQISRVF LV+ D ESELVSK+AAL+TGYA+EVL+C KR+ AE+A   
Sbjct: 268 MDPQSKLTILKSLQISRVFALVTGDSESELVSKIAALITGYAVEVLECYKRVTAEDAKGV 327

Query: 61  SKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVIL 120
           S +LLNEV+PSVFYVMQNCEVDT FSIVQFLSGYVATMKSLSPL+E+Q  + GQILEVI 
Sbjct: 328 SLELLNEVMPSVFYVMQNCEVDTAFSIVQFLSGYVATMKSLSPLREKQAHYVGQILEVIR 387

Query: 121 TQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANA 180
           TQIRYDP+YRNNLD+LDKIG EEEDRMVE+RKDL VLLRSVGRVAPEVTQVFIRNSL +A
Sbjct: 388 TQIRYDPVYRNNLDMLDKIGREEEDRMVEFRKDLFVLLRSVGRVAPEVTQVFIRNSLVSA 447

Query: 181 VTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVAL 240
           V  S +RNVEEVEAA++LLYALGES+S+EAMRTG+G L ELV MLL T+ PCHSNR+VAL
Sbjct: 448 VASSTERNVEEVEAAVSLLYALGESLSDEAMRTGSGLLGELVSMLLSTRFPCHSNRIVAL 507

Query: 241 VYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300
           VYLET TRYMKF+QE+TQYIP+VL AFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV
Sbjct: 508 VYLETTTRYMKFVQENTQYIPMVLTAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567

Query: 301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSS 360
           PFIE ILQSLQDT+ARFTSM+YAS EL GSEDGSHIFEAIGLLIGMEDVP EKQ+DYLS+
Sbjct: 568 PFIERILQSLQDTVARFTSMDYASHELFGSEDGSHIFEAIGLLIGMEDVPSEKQADYLSA 627

Query: 361 LLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLM 420
           LLTPLC QV+ +L++AK+LN +ES  K  NIQQIIMAINALSKGF+ERLVT+SRPAIGLM
Sbjct: 628 LLTPLCHQVEILLMNAKVLNSDESPGKIINIQQIIMAINALSKGFSERLVTASRPAIGLM 687

Query: 421 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM 480
           FKQTLD+LLQILVVFPK+EPLR KVTSFIHRMVDTLGASVFPYLPKALEQLLAE EP+EM
Sbjct: 688 FKQTLDILLQILVVFPKIEPLRSKVTSFIHRMVDTLGASVFPYLPKALEQLLAECEPREM 747

Query: 481 AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQ 540
            GFLVLLNQLICKFNTLVHDI++EVFPAIAGRIF++IPRDAFPSGPGTNTEEIRE+QELQ
Sbjct: 748 VGFLVLLNQLICKFNTLVHDIVEEVFPAIAGRIFSVIPRDAFPSGPGTNTEEIRELQELQ 807

Query: 541 RTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 600
           +T+YTFLHVIATHDLSSVFLSPKSRGYLD +MQ+LL+T+CNHKD LVRKACVQIFIRLIK
Sbjct: 808 KTMYTFLHVIATHDLSSVFLSPKSRGYLDSLMQMLLHTACNHKDILVRKACVQIFIRLIK 867

Query: 601 DWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYE 660
           DWC +P+ EEKVPGFQSF+IEAFA NCCL+SVLDKSFEF DANT VLFGEIV AQKVMYE
Sbjct: 868 DWCVKPYGEEKVPGFQSFIIEAFATNCCLFSVLDKSFEFQDANTFVLFGEIVQAQKVMYE 927

Query: 661 KFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLV 720
           KFGNDFL HFV+K F SAHCP +LA+QYCQKLQG+D+K LKSFYQSLIE LR+ QNG+LV
Sbjct: 928 KFGNDFL-HFVSKSFQSAHCPQELAQQYCQKLQGSDLKTLKSFYQSLIENLRLLQNGNLV 986

Query: 721 FR 722
           FR
Sbjct: 987 FR 988

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225442110\|ref\|XP_002273606.1\| PREDICTED: exportin-T [Vitis vinifera] gi\|297742994\|emb\|CBI35861.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449447900\|ref\|XP_004141704.1\| PREDICTED: exportin-T-like [Cucumis sativus] gi\|449523616\|ref\|XP_004168819.1\| PREDICTED: exportin-T-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224073696\|ref\|XP_002304132.1\| predicted protein [Populus trichocarpa] gi\|222841564\|gb\|EEE79111.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356506134\|ref\|XP_003521842.1\| PREDICTED: exportin-T-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573302\|ref\|XP_003554801.1\| PREDICTED: exportin-T-like [Glycine max]	Back alignment and taxonomy information

>gi\|30909319\|gb\|AAP37047.1\| PAUSED [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|42563175|ref|NP_177400.2| protein PAUSED [Arabidopsis thaliana] gi|145327223|ref|NP_001077813.1| protein PAUSED [Arabidopsis thaliana] gi|334183864|ref|NP_001185383.1| protein PAUSED [Arabidopsis thaliana] gi|75140113|sp|Q7PC79.1|XPOT_ARATH RecName: Full=Exportin-T; AltName: Full=Exportin(tRNA); AltName: Full=Protein PAUSED; AltName: Full=tRNA exportin gi|34303902|tpg|DAA01277.1| TPA_exp: exportin-t [Arabidopsis thaliana] gi|332197219|gb|AEE35340.1| protein PAUSED [Arabidopsis thaliana] gi|332197220|gb|AEE35341.1| protein PAUSED [Arabidopsis thaliana] gi|332197221|gb|AEE35342.1| protein PAUSED [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297842005\|ref\|XP_002888884.1\| hypothetical protein ARALYDRAFT_476390 [Arabidopsis lyrata subsp. lyrata] gi\|297334725\|gb\|EFH65143.1\| hypothetical protein ARALYDRAFT_476390 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224119496\|ref\|XP_002331175.1\| predicted protein [Populus trichocarpa] gi\|222873296\|gb\|EEF10427.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
TAIR\|locus:2030280		988	PSD "AT1G72560" [Arabidopsis t	1.0	0.730	0.750	1e-290
MGI\|MGI:1920442		963	Xpot "exportin, tRNA (nuclear	0.959	0.719	0.271	2.9e-71
UNIPROTKB\|O43592		962	XPOT "Exportin-T" [Homo sapien	0.959	0.720	0.265	8.9e-70
ZFIN\|ZDB-GENE-041210-4		971	xpot "exportin, tRNA (nuclear	0.957	0.711	0.277	1.1e-69
UNIPROTKB\|J9P2A6		962	XPOT "Uncharacterized protein"	0.959	0.720	0.265	1.8e-69
UNIPROTKB\|E2R4G4		963	XPOT "Uncharacterized protein"	0.959	0.719	0.266	1e-68
UNIPROTKB\|E1C593		962	XPOT "Uncharacterized protein"	0.961	0.721	0.264	4.4e-68
UNIPROTKB\|E1B8Q8		961	E1B8Q8 "Uncharacterized protei	0.959	0.721	0.263	2.4e-67
DICTYBASE\|DDB_G0283119		1088	xpot "exportin, tRNA" [Dictyos	0.718	0.477	0.257	5.6e-61
POMBASE\|SPBP8B7.09c		978	los1 "karyopherin exportin T L	0.951	0.702	0.244	2e-51

TAIR\|locus:2030280 PSD "AT1G72560" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2792 (987.9 bits), Expect = 1.0e-290, P = 1.0e-290
 Identities = 542/722 (75%), Positives = 624/722 (86%)

Query:     1 MDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEA 60
             MDPQSKL LLQTLQISRVFGLVS D +S+LVSKV+ALLTGYA+EVL+C KRLN+E+    
Sbjct:   267 MDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSKVSALLTGYAVEVLECHKRLNSEDTKAV 326

Query:    61 SKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVIL 120
             S  LLNEVLPSVFYVMQ CEVD+TFSIVQFL GYV+T+K L  LKE+Q LH  QILEVI 
Sbjct:   327 SMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLGYVSTLKGLPALKEKQLLHITQILEVIR 386

Query:   121 TQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANA 180
              QI YDPMYRNNL+ LDK G+EEEDRM E+RKDL VLLR+VGRVAPEVTQ FIRNSLANA
Sbjct:   387 IQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKDLFVLLRTVGRVAPEVTQHFIRNSLANA 446

Query:   181 VTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVAL 240
             V  S++ NVEEVEAAL+LLY+ GESM+EEAM+TG+G LSEL+PMLL T+ P HS+RLVAL
Sbjct:   447 VESSSESNVEEVEAALSLLYSFGESMTEEAMKTGSGCLSELIPMLLTTQFPGHSHRLVAL 506

Query:   241 VYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300
             VYLE +TRYMKFIQE++QYIP VL AFLD+RG+HH N +VSRRA YLFMRVVKLLK+KLV
Sbjct:   507 VYLENITRYMKFIQENSQYIPNVLGAFLDDRGLHHQNFYVSRRAGYLFMRVVKLLKSKLV 566

Query:   301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSS 360
             PFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDGSHIFEAIG++IG+EDVP EKQSDYLS 
Sbjct:   567 PFIDKILQNLQDTLSQLTTMNFASRELTGTEDGSHIFEAIGIIIGLEDVPAEKQSDYLSL 626

Query:   361 LLTPLCQQVQTMLLDAKMLNPEESTAKFXXXXXXXXXXXXLSKGFNERLVTSSRPAIGLM 420
             LLTPLCQQ++  L+ AK+ + E+   K             LSKGFNERLVT+SRP IGLM
Sbjct:   627 LLTPLCQQIEAGLVQAKVASSEDFPVKIANIQFAIVAINALSKGFNERLVTASRPGIGLM 686

Query:   421 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM 480
             FKQTLDVLL++L+ FPKVEPLR KVTSFIHRMVDTLG++VFPYLPKALEQLLA+SEPKEM
Sbjct:   687 FKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMVDTLGSAVFPYLPKALEQLLADSEPKEM 746

Query:   481 AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQ 540
              GF+VLLNQLICKFN+ +HDIL+EV+P +A RIFN+IPRD  PS PG  TEE+RE+ ELQ
Sbjct:   747 VGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRDGLPSRPGAVTEEMRELIELQ 806

Query:   541 RTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 600
             R LYTFLHVIATHDLSSVFL+PKSR YLDP+MQL+L TSCNHKD  VRKACVQIFI+LIK
Sbjct:   807 RMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQLVLNTSCNHKDITVRKACVQIFIKLIK 866

Query:   601 DWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYE 660
             DWCA P+ EEKVPGFQ+F+IEAFA NCCLYSVLDKSF F DANT  LFGEI+ AQKVMYE
Sbjct:   867 DWCAEPYSEEKVPGFQNFVIEAFATNCCLYSVLDKSFNFSDANTHALFGEIITAQKVMYE 926

Query:   661 KFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLV 720
             KFGN FL+H ++K FPSAH P DLAEQYCQKLQGNDI++LKS+YQSLIE LR+QQNGS V
Sbjct:   927 KFGNTFLMHLMSKSFPSAHIPQDLAEQYCQKLQGNDIRSLKSYYQSLIENLRLQQNGSHV 986

Query:   721 FR 722
             FR
Sbjct:   987 FR 988

GO:0000049 "tRNA binding" evidence=ISS

GO:0005643 "nuclear pore" evidence=IDA

GO:0006409 "tRNA export from nucleus" evidence=IGI;ISS

GO:0009908 "flower development" evidence=IMP

GO:0010014 "meristem initiation" evidence=IMP

GO:0015932 "nucleobase-containing compound transmembrane transporter activity" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

MGI\|MGI:1920442 Xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O43592 XPOT "Exportin-T" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041210-4 xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P2A6 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4G4 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C593 XPOT "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B8Q8 E1B8Q8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283119 xpot "exportin, tRNA" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPBP8B7.09c los1 "karyopherin exportin T Los1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PC79	XPOT_ARATH	No assigned EC number	0.7631	1.0	0.7307	yes	no
Q8H3A7	XPOT_ORYSJ	No assigned EC number	0.5667	0.9861	0.7265	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034073001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034551001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa)		•		0.800
	GSVIVG00032601001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (254 aa)		•		0.800
	GSVIVG00032600001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (241 aa)		•		0.800
	GSVIVG00008629001	SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (922 aa)	•		•	0.410
	GSVIVG00031073001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa)			•	0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		722
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.96
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.87
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.77
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.51
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.34
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.71
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.65
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	98.65
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	98.57
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	98.56
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.33
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.2
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.17
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.46
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.42
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.39
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.95
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.83
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	96.74
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.63
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.59
COG5656		970	SXM1 Importin, protein involved in nuclear import	96.4
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.22
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.2
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	96.02
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.01
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.83
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.36
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	94.95
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.94
PF05804		708	KAP: Kinesin-associated protein (KAP)	94.64
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	94.13
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	93.96
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.52
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	93.35
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.04
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.81
PTZ00429		746	beta-adaptin; Provisional	92.65
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	92.56
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.44
COG5656		970	SXM1 Importin, protein involved in nuclear import	92.35
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.32
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.25
PTZ00429		746	beta-adaptin; Provisional	88.14
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	87.67
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	87.66
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.53
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	86.21
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	85.12
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	84.86
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	84.75
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	84.35
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	83.89
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	83.69
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	83.47
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	81.74
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	81.3
KOG1242		569	consensus Protein containing adaptin N-terminal re	80.85

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=2.4e-120  Score=976.00  Aligned_cols=703  Identities=35%  Similarity=0.518  Sum_probs=646.3

Q ss_pred             CChhhHHHHHHhcCh-hhhhcc--ccccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhH---HHHHHHHHHHHHHHHHh
Q 004950            1 MDPQSKLNLLQTLQI-SRVFGL--VSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENA---NEASKKLLNEVLPSVFY   74 (722)
Q Consensus         1 M~p~~Kl~li~~L~l-~~~l~~--~~~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~---~~~~~~~l~~~~plvL~   74 (722)
                      |||.+||.|+++|+. .+....  .++.+|.||.|+++||+|++|.|++.|.++.+++..   .+.++..+...+|++++
T Consensus       263 MkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq  342 (980)
T KOG2021|consen  263 MKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQ  342 (980)
T ss_pred             CChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999954 333332  234589999999999999999999999887754332   33666667779999999


Q ss_pred             hhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCC-CChhHHHHHHHHHHH
Q 004950           75 VMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDK-IGIEEEDRMVEYRKD  153 (722)
Q Consensus        75 ~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~-~~~ede~~F~e~Rk~  153 (722)
                      ++.|+++|++..+||||+.|+..+|+.++++++.+.++.+++.++++||.||+.+.    |+|+ +|+|||+.|.|+||+
T Consensus       343 ~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~----nddn~tg~EeEa~f~e~Rkk  418 (980)
T KOG2021|consen  343 FLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYF----NDDNVTGDEEEAFFEEVRKK  418 (980)
T ss_pred             HhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhh----cccCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999984    3344 677899999999999


Q ss_pred             HHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhccc------ccHHhHHHHHHh
Q 004950          154 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGA------GHLSELVPMLLQ  227 (722)
Q Consensus       154 l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~------~~l~~l~~~l~~  227 (722)
                      ++.++|.+.+++|++.+..|++.+.++++++++.+||++|+|||.+|.+||+.+++.....+      .++.+++.++++
T Consensus       419 Lk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~t  498 (980)
T KOG2021|consen  419 LKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMT  498 (980)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888899999999999999999999987654432      567789999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHH
Q 004950          228 TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENIL  307 (722)
Q Consensus       228 ~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il  307 (722)
                      +.++.++|+.|++.|+|+|+||.+||..+++++|.+|++|+|+||+||.+.+||+||||||+||+|.+|++|+||++.|+
T Consensus       499 sqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~il  578 (980)
T KOG2021|consen  499 SQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEIL  578 (980)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhcc-CCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhh
Q 004950          308 QSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTA  386 (722)
Q Consensus       308 ~~l~~ll~~~~~-~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~  386 (722)
                      +.+||+|.++.. ++..+....+.|||+|+||+||.+|+..+.|+|++..|++.+++|++.+..-.+..+.-.++++.+.
T Consensus       579 n~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv  658 (980)
T KOG2021|consen  579 NKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPV  658 (980)
T ss_pred             HHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccH
Confidence            999999964432 2223344567899999999999999999999999999999999999999987776665555666677


Q ss_pred             HHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHH
Q 004950          387 KFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPK  466 (722)
Q Consensus       387 ~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~  466 (722)
                      .++..+|+++|+|+++|||....++.++++|..+|.+++++++.++..|+..+.+|.++|+++||||.|+|+.++|++|+
T Consensus       659 ~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipk  738 (980)
T KOG2021|consen  659 VIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPK  738 (980)
T ss_pred             HHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHH
Confidence            78889999999999999999988888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004950          467 ALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTF  546 (722)
Q Consensus       467 li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~f  546 (722)
                      +++.|++.++.+|+.+|++|+||+||+||.+++++++++++|++.|+|+++...+    -+.+|+.+-++.+++|+|++|
T Consensus       739 lie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a----~p~dt~aa~ek~~lrksy~~f  814 (980)
T KOG2021|consen  739 LIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIA----KPIDTAAAAEKILLRKSYCTF  814 (980)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCCChhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999864    356788888999999999999


Q ss_pred             HHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhh
Q 004950          547 LHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMN  626 (722)
Q Consensus       547 l~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~  626 (722)
                      +++..++|.++|+.++.|..+++.++..+++++....||-.||++.....+++..|||.    ++..||.+|.++..++-
T Consensus       815 Lqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggk----dg~~gf~dfvlk~~~ln  890 (980)
T KOG2021|consen  815 LQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGK----DGDNGFKDFVLKIDGLN  890 (980)
T ss_pred             HHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCc----CCccccccceeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999886    45578999999998887


Q ss_pred             hhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhccCCchHHHH-HHH
Q 004950          627 CCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKS-FYQ  705 (722)
Q Consensus       627 ~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~~~~~k~~k~-~~~  705 (722)
                      +|+..|+.+.||++|||+..+++|+|.++|+++.|.|++++.||.+.|||+.++|++.+++||++|++.|.|.||+ |++
T Consensus       891 ~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q~ylPs~q~pqela~qycqaLq~~d~k~Fk~~f~~  970 (980)
T KOG2021|consen  891 KCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQIYLPSIQLPQELAIQYCQALQTMDQKQFKKWFVD  970 (980)
T ss_pred             ceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcccccCCHHHHHHHHHHHhccchhHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhcc
Q 004950          706 SLIEKLRVQQ  715 (722)
Q Consensus       706 ~f~~~~r~~~  715 (722)
                      .|+++.+.+|
T Consensus       971 ~fis~lkpg~  980 (980)
T KOG2021|consen  971 NFISVLKPGQ  980 (980)
T ss_pred             HHHHhcCCCC
Confidence            9999988654

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		722
3ibv_A		980	Karyopherin Cytosolic State Length = 980		1e-48

>pdb|3IBV|A Chain A, Karyopherin Cytosolic State Length = 980

Back alignment and structure

Iteration: 1

Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 156/653 (23%), Positives = 305/653 (46%), Gaps = 45/653 (6%) Query: 82 DTTFSIVQFLSGYVATMKSLSPLKE---EQRLHAGQILEVILTQIRYDPMYRNNLDVLDK 138 +T+ ++ FLS + +++ S KE + +LE I+ +++YD + D Sbjct: 347 ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD----DD 402 Query: 139 IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEA 194 EEE E RK L + ++ + + + I +SL+ A T S + + + +E Sbjct: 403 PDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEF 462 Query: 195 ALTLLYALGESMSE-----EAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY 249 AL Y GE + + LS+++ ++ +++ H + LV L+Y+E + RY Sbjct: 463 ALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 Query: 250 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQS 309 F + IP ++ F+ RGIH+ N V RA YLF R VK +K ++V + E+ L Sbjct: 523 ASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAM 582 Query: 310 LQD----TIARFTSMNYASKELSGSEDGS------HIFEAIGLLIGMEDVPPEKQSDYLS 359 L D +++ T M+ L+ S S ++FE +G+LI ++ PE+Q+ Y Sbjct: 583 LGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 Query: 360 SLLTPLCQQVQTMLLDAKMLNPEESTAKFXXXXXXXXXXXXLSKGFNERLVTSSRPAIGL 419 SL+ L + +A + + + +KGF R S A Sbjct: 643 SLINALIGKA-----NAALSSDLSALENIISVYCSLMAIGNFAKGFPAR--GSEEVAWLA 695 Query: 420 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE 479 F + D + IL E +R V R+++ +G + P +P+ + LL + E Sbjct: 696 SFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE 755 Query: 480 MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQEL 539 + L ++QLI + + +I + + P + RIF+ + A P G T++ + +L Sbjct: 756 LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSL--SAAPQG----TDDAVKQNDL 809 Query: 540 QRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 +++ +F+ + S+ + +++ Y DP++ +L+ + + +K+ + + +++ Sbjct: 810 RKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV 869 Query: 600 KDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMY 659 W + + + GF++F + + C ++ +F D +LV+ GE+ QK++ Sbjct: 870 SLWGGK----DGIAGFENFTLSLTPL--CFEMPVNPNFNTRDGQSLVVLGELAGLQKIIL 923 Query: 660 EKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLR 712 EK G+ + + VT FP+ + P +A +Y Q L D ++ K F+Q I+ L+ Sbjct: 924 EKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRSFKQFFQKFIQALK 976

PyMOL of 3ibv

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		722
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	1e-133
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	5e-52
2x19_B		963	Importin-13; nuclear transport, protein transport;	4e-49
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-43
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	3e-34
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	4e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-12
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	8e-08

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

 Score =  417 bits (1072), Expect = e-133
 Identities = 167/739 (22%), Positives = 328/739 (44%), Gaps = 48/739 (6%)

Query: 1   MDPQSKLNLLQTLQISRVFG-LVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENA-- 57
           M P  KLNLL  L ++  F     +  +      VA L+    +E++      +  +   
Sbjct: 263 MKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPEL 322

Query: 58  NEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLS---PLKEEQRLHAGQ 114
            E     L  + P +   + +   +T+ ++  FLS  + +++  S    L    +     
Sbjct: 323 KENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKS 382

Query: 115 ILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIR 174
           +LE I+ +++YD     + +  D    EEE    E RK L +   ++  +   +   ++ 
Sbjct: 383 LLEAIIKKMKYDE----SQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438

Query: 175 ----NSLANAVTFSADRNVEEVEAALTLLYALGESMS-----EEAMRTGAGHLSELVPML 225
               +SL+ A T S + + + +E AL   Y  GE +         +      LS+++ ++
Sbjct: 439 SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALV 498

Query: 226 LQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRAS 285
             +++  H + LV L+Y+E + RY  F    +  IP ++  F+  RGIH+ N  V  RA 
Sbjct: 499 TTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAW 558

Query: 286 YLFMRVVKLLKAKLVPFIENILQSLQD----------TIARFTSMNYASKELSGSEDGSH 335
           YLF R VK +K ++V + E+ L  L D           +        +S   S      +
Sbjct: 559 YLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLY 618

Query: 336 IFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQII 395
           +FE +G+LI   ++ PE+Q+ Y  SL+  L  +    L          +     ++   +
Sbjct: 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDL-----SALENIISVYCSL 673

Query: 396 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455
           MAI   +KGF  R   S   A    F +  D +  IL      E +R  V     R+++ 
Sbjct: 674 MAIGNFAKGFPAR--GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731

Query: 456 LGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN 515
           +G  + P +P+ +  LL   +  E+   L  ++QLI  +   + +I + + P +  RIF+
Sbjct: 732 VGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791

Query: 516 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLL 575
            +            T++  +  +L+++  +F+  +      S+  + +++ Y DP++  +
Sbjct: 792 SLSA------APQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSI 845

Query: 576 LYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDK 635
           L+ +    +   +K+ + +  +++  W      ++ + GF++F +       C    ++ 
Sbjct: 846 LHFANLVGEPATQKSSIALVSKMVSLWGG----KDGIAGFENFTLS--LTPLCFEMPVNP 899

Query: 636 SFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGN 695
           +F   D  +LV+ GE+   QK++ EK G+ +  + VT  FP+ + P  +A +Y Q L   
Sbjct: 900 NFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALSNL 959

Query: 696 DIKALKSFYQSLIEKLRVQ 714
           D ++ K F+Q  I+ L+  
Sbjct: 960 DSRSFKQFFQKFIQALKSG 978

PyMOL of 3ibv

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		722
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.94
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.92
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.91
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.9
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.59
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.43
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.35
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.28
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.22
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.99
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.87
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.76
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	98.37
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.33
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.28
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.17
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.68
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.55
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.49
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.48
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.48
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.46
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.45
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.38
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.27
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.19
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.18
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.15
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.12
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.01
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.88
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.62
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.1
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.04
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.94
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.35
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	94.33
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.51
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	93.36
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.33
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	93.25
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	93.09
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	92.53
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	91.86
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	91.22
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	91.14
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.88
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	90.84
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	90.45
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	90.3
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	89.51
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	88.91
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	88.88
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	88.39
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.26
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	86.87
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	86.21
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.31
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	85.11
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	83.81
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	83.25
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	83.01
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	82.52
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	81.61
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	81.4
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	80.86
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	80.02

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

Probab=100.00  E-value=8e-116  Score=1059.69  Aligned_cols=690  Identities=24%  Similarity=0.408  Sum_probs=572.3

Q ss_pred             CChhhHHHHHHhcChhhhhccccc-cchhhHHHHHHHHHHHHHHHHHHHhhhcCh---hhHHHHHHHHHHHHHHHHHhhh
Q 004950            1 MDPQSKLNLLQTLQISRVFGLVSE-DGESELVSKVAALLTGYAMEVLDCVKRLNA---ENANEASKKLLNEVLPSVFYVM   76 (722)
Q Consensus         1 M~p~~Kl~li~~L~l~~~l~~~~~-~~D~e~~~~~a~L~~~~g~el~~~~~~~~~---~~~~~~~~~~l~~~~plvL~~~   76 (722)
                      |+|.+|+++|+.|++.+++..+.. ++|.|+.+++|||++++|++++.+ ++...   .+..+.+..++..++|++|+|+
T Consensus       263 ~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~  341 (980)
T 3ibv_A          263 MKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYL  341 (980)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHh
Confidence            789999999999999999998764 689999999999999999999999 64221   2445578889999999999999


Q ss_pred             ccCCccchhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHH
Q 004950           77 QNCEVDTTFSIVQFLSGYVATMKSL---SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD  153 (722)
Q Consensus        77 ~~~d~~~~~~~~~F~~~~l~~lk~~---~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~  153 (722)
                      +|+|++++..||+||+.|++.+|+.   .++.+.+++++.+|++++++||+||+++    ||.+++|+||+++|++|||+
T Consensus       342 ~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~----~~~~~~d~ed~~~F~e~Rk~  417 (980)
T 3ibv_A          342 SDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ----EWDDDPDSEEEAEFQEMRKK  417 (980)
T ss_dssp             TCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC----CCCCCSSSSTHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc----ccccccchhHHHHHHHHHHH
Confidence            9999999999999999999998753   3478999999999999999999999886    34433345788999999999


Q ss_pred             HHHHHHHHHHcChhhHHH----HHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh--cccc---cHHhHHHH
Q 004950          154 LLVLLRSVGRVAPEVTQV----FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR--TGAG---HLSELVPM  224 (722)
Q Consensus       154 l~~ll~~i~~l~~~l~l~----~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~--~~~~---~l~~l~~~  224 (722)
                      +++++++|+.++|+++++    ++.+.+.+.+.++++.+|+++|||||+||++||+++.+...  ..+.   .+-+++..
T Consensus       418 l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~  497 (980)
T 3ibv_A          418 LKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL  497 (980)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence            999999999999999999    77777777665434568999999999999999999865432  1222   34455566


Q ss_pred             HHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHH
Q 004950          225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE  304 (722)
Q Consensus       225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~  304 (722)
                      ++++++++++||+||+++||++|||++||..||+|++++|++|++++|++|++++||+||||+|+|||++||++|.||++
T Consensus       498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~  577 (980)
T 3ibv_A          498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE  577 (980)
T ss_dssp             HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence            67778888999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCcccc--------cCC---CCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHH
Q 004950          305 NILQSLQDTIARFTSMNYASK--------ELS---GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML  373 (722)
Q Consensus       305 ~il~~l~~ll~~~~~~~~~~~--------~~~---~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~  373 (722)
                      +|++.++++|.++++ +....        +++   ..++|+|||||||+|++..+.|+|++..+++.+++|+++++++++
T Consensus       578 ~il~~l~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l  656 (980)
T 3ibv_A          578 SSLAMLGDLLNISVS-PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL  656 (980)
T ss_dssp             HHHHHTTGGGCCCCC-CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCC-CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997754 22111        000   135799999999999999888899999999999999999999999


Q ss_pred             HhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHH
Q 004950          374 LDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV  453 (722)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v  453 (722)
                      +......  ++  . .++||+++|+|+++|||++.+..  .+|+..+|.+++++++++++.|+++..||||+|++||||+
T Consensus       657 ~~~~~~~--~~--~-~~i~~~i~al~~lakgf~~~~~~--~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i  729 (980)
T 3ibv_A          657 SSDLSAL--EN--I-ISVYCSLMAIGNFAKGFPARGSE--EVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRII  729 (980)
T ss_dssp             TTSCC----CH--H-HHHHHHHHHHHHHHHTSCSCC-C--CCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHT
T ss_pred             hhcccCc--cH--H-HHHHHHHHHHHHHhccCCcccCC--CCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            7654321  12  1 27899999999999999976322  2349999999999999999999999999999999999999


Q ss_pred             HhcCcccccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHH
Q 004950          454 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEI  533 (722)
Q Consensus       454 ~~lg~~v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~  533 (722)
                      .|+|++++|++|++++.|+..++.+++++||+++||+||+||++++++++++++|+++|+|++|++      |+++||.+
T Consensus       730 ~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~------~~~~td~~  803 (980)
T 3ibv_A          730 NVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA------APQGTDDA  803 (980)
T ss_dssp             TTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----------CCHH
T ss_pred             HHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCcHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999996      35677999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCch
Q 004950          534 REVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVP  613 (722)
Q Consensus       534 r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~  613 (722)
                      |++++|+|+|++|++++++|+++++++|+.|+++|+.++.+++++|.+++|+.++|+|+++|++|++.||++    .++|
T Consensus       804 r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~----~~~~  879 (980)
T 3ibv_A          804 VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK----DGIA  879 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-----------C
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC----Ccch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875    3489


Q ss_pred             hHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhc
Q 004950          614 GFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ  693 (722)
Q Consensus       614 gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~  693 (722)
                      ||++|+++ ++|+ ||.+|++|+||++|||++.+++|||.++|++++|+|++|++||.+.|||++++|++.+++||++|+
T Consensus       880 gf~~f~~~-~~~~-~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l~  957 (980)
T 3ibv_A          880 GFENFTLS-LTPL-CFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALS  957 (980)
T ss_dssp             CHHHHHHH-HHHH-HHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC----CCHHHHHHHC--
T ss_pred             HHHHHHHH-HHHH-HHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCcCCCCHHHHHHHHHHHh
Confidence            99999999 9996 899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCchHHHHHHHHHHHHHhhcc
Q 004950          694 GNDIKALKSFYQSLIEKLRVQQ  715 (722)
Q Consensus       694 ~~~~k~~k~~~~~f~~~~r~~~  715 (722)
                      +.|.|.|||||++|++++|||.
T Consensus       958 ~~~~k~f~~~~~~~~~~~~~~~  979 (980)
T 3ibv_A          958 NLDSRSFKQFFQKFIQALKSGN  979 (980)
T ss_dssp             --------------CHHHHC--
T ss_pred             ccchhhHHHHHHHHHHHhhcCC
Confidence            8999999999999999999873

PyMOL of 3ibv

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		722
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	4e-04
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.001

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 47/351 (13%), Positives = 113/351 (32%), Gaps = 50/351 (14%)

Query: 253 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD 312
           I   T+ +   L A + + G     +  +        RV++  +  + P    +L    +
Sbjct: 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIE 601

Query: 313 TIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTM 372
            +         +K  S      + FE+IG ++       +     + S++          
Sbjct: 602 IVTI------MAKNPSNPRFTHYTFESIGAILNYTQ--RQNLPLLVDSMMPTFLTVFSED 653

Query: 373 LLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQIL 432
           + +               + QII  +   S    E +   ++P +     +    +  + 
Sbjct: 654 IQEF-----------IPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVT 702

Query: 433 VVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALE--QLLAESEPKEMAGFLVLLNQL 490
            +          + SFI        +S+FP L   L   Q L  S+  E+ GF +L + +
Sbjct: 703 RL----------LKSFIKT-----DSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIM 747

Query: 491 ICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 550
           +      +   + ++   +  R+               N++  R V++L        + +
Sbjct: 748 LLIDMNRLRPYIKQIAVLLLQRL--------------QNSKTERYVKKLTVFFGLISNKL 793

Query: 551 ATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601
            +  L       +   +       ++ T     + L RK  +   + ++ +
Sbjct: 794 GSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVIN 844

PyMOL of d1wa5c_

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		722
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.92
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.73
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.24
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.81
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.72
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.62
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	98.6
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.56
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.39
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.27
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.54
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.52
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.73
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.18
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.53
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	93.76
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.07
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.07
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.38
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	83.84

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.9e-25  Score=261.80  Aligned_cols=538  Identities=14%  Similarity=0.171  Sum_probs=356.2

Q ss_pred             HHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCccccc-----CCc-----
Q 004950           65 LNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRN-----NLD-----  134 (722)
Q Consensus        65 l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~-----~~d-----  134 (722)
                      +.+++++++..+.++|.++...+++||..+.+....    .....+++.+++..+.+.|.|++.+..     ..+     
T Consensus       252 l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~----~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  327 (888)
T d1qbkb_         252 MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC----KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIP  327 (888)
T ss_dssp             TTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGG----TTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSC
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhh
Confidence            456777778888888888888999999887643211    122334566777777777777654310     000     


Q ss_pred             -----------------------cCCCCChh-------HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCC
Q 004950          135 -----------------------VLDKIGIE-------EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS  184 (722)
Q Consensus       135 -----------------------~~~~~~~e-------de~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~  184 (722)
                                             ....++++       +.......|+..+..++.++...++.+++.+.+.+.+.+.+ 
T Consensus       328 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s-  406 (888)
T d1qbkb_         328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH-  406 (888)
T ss_dssp             CCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS-
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhcc-
Confidence                                   00000000       00111236888888888888887777788888888877754 


Q ss_pred             CCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc--CCChHH
Q 004950          185 ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH--TQYIPV  262 (722)
Q Consensus       185 ~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~--p~~L~~  262 (722)
                        .+|+..|+|++++++++|++....    ...++++++.|++.  .+++||.||.+++++++||++|+..+  ..|+.+
T Consensus       407 --~~~~~reaa~~alg~i~eg~~~~~----~~~l~~li~~l~~~--l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~  478 (888)
T d1qbkb_         407 --HEWVVKESGILVLGAIAEGCMQGM----IPYLPELIPHLIQC--LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP  478 (888)
T ss_dssp             --SSHHHHHHHHHHHHHHTTTSHHHH----TTTHHHHHHHHHHH--TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTT
T ss_pred             --chhHHHHHHHHHhhhhhhhHHHHh----cccchhhhHHHHHh--ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence              689999999999999999986432    36788999988873  56789999999999999999999754  357788


Q ss_pred             HHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHH
Q 004950          263 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL  342 (722)
Q Consensus       263 vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~  342 (722)
                      +++.++  .++.+++++|+.+||.+|..|++.+...+.||++++++.+...+...           ..+....++++++.
T Consensus       479 ~l~~ll--~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-----------~~~~~~~~~~al~~  545 (888)
T d1qbkb_         479 LMTELL--KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-----------QHKNLLILYDAIGT  545 (888)
T ss_dssp             HHHHHH--HHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHH
T ss_pred             hHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHH
Confidence            888888  67778999999999999999999999999999999999987765411           23457789999999


Q ss_pred             HHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhh-------------h-ccCCc--hhhhHHHh----------------
Q 004950          343 LIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDA-------------K-MLNPE--ESTAKFAN----------------  390 (722)
Q Consensus       343 Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~-------------~-~~~~~--~~~~~~~~----------------  390 (722)
                      ++...+ +.-.+..+++.+++++.+.++......             . ..+..  .....+.+                
T Consensus       546 l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  624 (888)
T d1qbkb_         546 LADSVG-HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN  624 (888)
T ss_dssp             HHHHHG-GGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhh-ccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            998654 223356788888888776654321100             0 00000  00000000                


Q ss_pred             --------------HHHHHHHHHHhhhccCCCccCCCcchHHHHHH--HHHHHHHHHHhcCCCChhHHhHHHHHHHHHHH
Q 004950          391 --------------IQQIIMAINALSKGFNERLVTSSRPAIGLMFK--QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVD  454 (722)
Q Consensus       391 --------------~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~--~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~  454 (722)
                                    +...+..++.+.+++...        ......  ...+++..+++  ..+..||+.+..+++.++.
T Consensus       625 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~--------~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgdl~~  694 (888)
T d1qbkb_         625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--------IEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTK  694 (888)
T ss_dssp             HHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTT--------THHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred             hcccccccchhHHHHHHHHHHHHHHHHHhhhh--------hhhhhhHhhHHHHHHHHhC--CCChHHHHHHHHHHHHHHH
Confidence                          000111112222222110        111111  25666777776  6778999999999999999


Q ss_pred             hcCcccccchHHHHHHHHhcCChh---hHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCH
Q 004950          455 TLGASVFPYLPKALEQLLAESEPK---EMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTE  531 (722)
Q Consensus       455 ~lg~~v~p~lp~li~~ll~~~~~~---~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d  531 (722)
                      .++..+.|+++.++..++...+..   -....+|.+|.++.+.++++.|.+..    ++..+..+++..      . .++
T Consensus       695 ~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~----il~~L~~il~~~------~-~~~  763 (888)
T d1qbkb_         695 ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM----VLHQLVEIINRP------N-TPK  763 (888)
T ss_dssp             HCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHH----HHHHHHHHHTCT------T-CCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHcCC------C-ccH
Confidence            999999999999999998877543   33557899999999999888775555    555557777642      2 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004950          532 EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEK  611 (722)
Q Consensus       532 ~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~  611 (722)
                      .      ++++-...+..+...++.      ..+|+++.++..|+.......|...++.|+..++++|+.--   +  ..
T Consensus       764 ~------v~~n~~~~lgrl~~~~p~------~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p---~--~~  826 (888)
T d1qbkb_         764 T------LLENTAITIGRLGYVCPQ------EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP---S--GV  826 (888)
T ss_dssp             H------HHHHHHHHHHHHHHHCHH------HHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG---G--GT
T ss_pred             H------HHHHHHHHHHHHHHHCHH------HHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc---H--HH
Confidence            2      556666666666665543      23557888888899877788899999999999999995421   1  22


Q ss_pred             chhHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhccCCCCCCCHHHHHHHH
Q 004950          612 VPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGND-FLVHFVTKGFPSAHCPPDLAEQYC  689 (722)
Q Consensus       612 ~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e-~~~~l~~~~lP~~~~~~~~~~~f~  689 (722)
                      ++.+..|+..       +....    +.+    -.+-..+..+|..+.+..|++ |-+.+.       ++||+.++++-
T Consensus       827 ~~~l~~~~~~-------i~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~~w~~~~~-------~~~~~~~~~l~  883 (888)
T d1qbkb_         827 IQDFIFFCDA-------VASWI----NPK----DDLRDMFCKILHGFKNQVGDENWRRFSD-------QFPLPLKERLA  883 (888)
T ss_dssp             GGGHHHHHHH-------HTTCS----SCC----HHHHHHHHHHHHHHHHHHCHHHHHHHHH-------SSCHHHHHHHH
T ss_pred             HHHHHHHHHH-------HHhcC----CCC----HHHHHHHHHHHHHHHHHcCcHhHHHHHH-------cCCHHHHHHHH
Confidence            3444333221       11111    111    134456677777777777765 554432       36777776654

PyMOL of d1qbkb_

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure