Citrus Sinensis ID: 004984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
Protein Sequence
MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGTEQSRKCLC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEcHHHHHHHccHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEHEHHHHccHHHHHHHccccHHHcHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHccccccccccHEEEHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHEEEEcEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
mrtffpsdsckesqlngfnpqswLQVERGKLsklsshnsssssiesfikvpeprilpnykpvdYVEVLAQIHEELelcplqersslYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKClqefgpidiaSHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKfaalsapfsamlnGSFMESLCedidlsennispsglriisdfsvtgslngvtpNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEvamnldprsdkTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVtplgwmyqerslycegdkrwedldkataldptlsypymyraSSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIltlspdyrmfeGRVAASQLHMLVREHIDNWTIADCWLQLYDrwssvddiGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAladssqdsscsSTVVSLLEDAlkcpsdrlrkgteqsrkclc
Flexible Loop (DISEMBL)
mrtffpsdsckesqlngfnpqsWLQVERGKLSKLsshnsssssiesfikvpeprilPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEdalkcpsdrlrkgteqsrkclc
Low Complexity Region (SEG)
MRTFFPSDSCKESQLNGFNPQSWLQVERGKLsklsshnsssssiesFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKlaleclelrfcfflaleDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSllllrlNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAdssqdsscsstvvsLLEDALKCPSDRLRKGTEQSRKCLC
Disordered region (IsUnstruct)
***********************************************IKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA***************************************
Disordered Region (DISOPRED)
**T*****SCKESQLN*********************************VPEPRILPNYKPVDYVEVLAQIHEELEL*PLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHL***************SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC*************KCLC
Disordered Region (DISEMBL)
************SQLNGFNPQSWLQVERG*****************FIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL*********DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA*************SLLEDALKCPSDR*************
Disordered Region (DISPRO)
******************************************SIESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINV************QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR**T*QSR*CLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGTEQSRKCLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	721	2.2.26 [Sep-21-2011]
Q9ZQX6	888	ETO1-like protein 1 OS=Ar	yes	no	0.983	0.798	0.717	0.0
O65020	951	Ethylene-overproduction p	no	no	0.916	0.695	0.483	1e-178
Q9LV01	925	ETO1-like protein 2 OS=Ar	no	no	0.916	0.714	0.425	1e-145

>sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/714 (71%), Positives = 607/714 (85%), Gaps = 5/714 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTF+PSDSCKESQL+  NPQSWLQVERGKLS  +S ++     ESFIKVPEP+ILP+YK
Sbjct: 1   MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCR-ESFIKVPEPQILPHYK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60  PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
           +VFG+WL+YEKQGEE+I DLL +C K  +EF P+DIAS+       A S E  S+  ++ 
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177

Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
           V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++ 
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237

Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
           DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297

Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
           SP+LA SCLQVFL E+PD LNDERVVE+ +  NR   S M G A FSLY  LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357

Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
           PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE  FE A N GH+YS  
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417

Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
           GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477

Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
           +YPYMYRA + M+KQN +AAL EINRILGFKLALECLE+RFC +L ++DY+AAL D+QA 
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537

Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
           LTL PDYRMF+G+VA  QL  LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597

Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
           SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657

Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           +KA+ESI +KRSFEA+FL+AYALA+SS D S SSTVVSLLEDALKCPSDRLRKG
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKG 711

Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes.
Arabidopsis thaliana (taxid: 3702)

>sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2

 Score =  625 bits (1611), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 325/672 (48%), Positives = 448/672 (66%), Gaps = 11/672 (1%)

Query: 52  EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
           EP+I P  K VD VE +AQ++  +E C   E+S  YL Q  +F+G+ + KL RRSLR + 
Sbjct: 101 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 160

Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
           Q A  VH K+V  +WL++E++ +ELI    ++C     E     + S    +        
Sbjct: 161 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 220

Query: 167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
           +G+  +  M+ D+      V  ++ F I +E++ C R K A+LS PF AML G F E   
Sbjct: 221 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 280

Query: 221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
             I+ ++N IS  G+R    FS T  L+   PN++LE+L  AN+FCC+ LK ACD  LA 
Sbjct: 281 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 340

Query: 281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
           LV S ++A+ L+ Y +EE + +L  +CLQVFLRELP  +++  V++IF  A  + R   +
Sbjct: 341 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 400

Query: 341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
           G ASF+LY  LS++AM  D +S+ TV  LERL+E A    ++ LA+HQLG V L RKEY 
Sbjct: 401 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 460

Query: 401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
           +A+  F AAV AGH+YS+ G+AR  + + H+  AY+ +NS+IS     GWM+QERSLYC 
Sbjct: 461 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 520

Query: 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFC 520
           G ++  DLD AT  DPTL++PY +RA +L+ +    AA+AE+N+ILGFK + +CLE+R  
Sbjct: 521 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 580

Query: 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
             + +EDY+ AL D++A+LTL P++ MF  ++    +  L+R     W+ ADCW+QLYDR
Sbjct: 581 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 640

Query: 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640
           WSSVDDIGSL+V++ ML +D  K +L FRQSLLLLRLNC +AAMRSL+LAR H+ S+HER
Sbjct: 641 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 700

Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700
           LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALADS+ D   S+ V+ LL++
Sbjct: 701 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 760

Query: 701 ALKCPSDRLRKG 712
           ALKCPSD LRKG
Sbjct: 761 ALKCPSDGLRKG 772

Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/679 (42%), Positives = 417/679 (61%), Gaps = 18/679 (2%)

Query: 52  EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
           EP +    KP+D VE L+ ++  +E     E S LYL Q+ V + LG+AKL+RR L  A 
Sbjct: 60  EPPLDSYLKPIDLVESLSNLYRRIESSSESEASMLYLEQYAVLRSLGDAKLLRRCLLNAR 119

Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSH- 170
           + A  V  K+VF AWL++ ++  EL+    ++C+    E     +      +++  G   
Sbjct: 120 RHAIDVPCKVVFSAWLRFFRREHELVGVESMDCNGLASECPKTSLTHGCDLNVDDEGCEC 179

Query: 171 ETV----------------SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGS 214
            TV                  SG   + ++ F +  EK +C R + AALS PF AML GS
Sbjct: 180 STVCEDEFGSDDVKISKADEFSGLDEVSDISFCVGSEKAKCVRSRIAALSRPFEAMLYGS 239

Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
           F+ES   +ID SEN IS   +  ++ +S    ++      + E+L  A+KFCC+ LK  C
Sbjct: 240 FVESTTSEIDFSENGISIEAMLALNIYSRIKRVDLFRVETVFELLQLASKFCCDDLKSEC 299

Query: 275 DRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQ 334
           + +LA+ V   + A+  + YA+EE + +L  +CLQVFLRELP  L++ +V+  F  +  +
Sbjct: 300 EARLAASVTDLDKALTFVEYALEERTTLLLSACLQVFLRELPQSLHNPKVMRFFCSSEAK 359

Query: 335 HRSIMVGL-ASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVR 393
            +   +G    F LY  LS+V M     +D  +  LER  E A T+ Q+ L+ HQ+GCV 
Sbjct: 360 EQLAFLGSECVFLLYYFLSQVGMEEKLTTDTMLILLERTREFARTNWQKALSLHQMGCVL 419

Query: 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453
             RK+Y  A+  F  A + GH+YS+AG++R  Y +G +  AY  +N +IS+  P GWMYQ
Sbjct: 420 FERKDYKAAQFHFRLASSLGHVYSLAGVSRTEYKQGKRYSAYRLMNFLISNHKPHGWMYQ 479

Query: 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513
           ERSLY  G ++ +DL  AT LDPTLS+PY YRA     ++ ++ A  EI+R++ FKL+ E
Sbjct: 480 ERSLYNVGVEKLKDLATATELDPTLSFPYKYRAVMKFEQKQIKEAFQEIDRLIQFKLSPE 539

Query: 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573
           CLELR   +LA  D ++ L D++A+L+L P+Y +F G++    +  L  + I+  + ADC
Sbjct: 540 CLELRAWLYLATGDRESCLRDLRAVLSLEPNYVVFGGKMRDDLVEALTAQCIEVESEADC 599

Query: 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633
           W++L+DRWS+VDD+ SL+V++QML++D  K  L FRQSLLLLRLNC  AAMR L++A   
Sbjct: 600 WVRLFDRWSAVDDVASLAVVHQMLQNDPSKNFLRFRQSLLLLRLNCQGAAMRCLRMAWNL 659

Query: 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693
           A S+ ERLVYEGW+LYD  + EE L KAEE+I ++RSFEAFFLKAYALAD + D+   S 
Sbjct: 660 ATSEAERLVYEGWLLYDMGYVEETLTKAEEAISIQRSFEAFFLKAYALADKNLDADEISC 719

Query: 694 VVSLLEDALKCPSDRLRKG 712
           VV +LE+ALKCPSD LRKG
Sbjct: 720 VVQVLEEALKCPSDGLRKG 738

Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
359495432	886	PREDICTED: ETO1-like protein 1-like [Vit	0.983	0.800	0.828	0.0
255559841	851	conserved hypothetical protein [Ricinus	0.986	0.835	0.812	0.0
449455250	890	PREDICTED: ETO1-like protein 1-like [Cuc	0.986	0.798	0.771	0.0
449526563	890	PREDICTED: ETO1-like protein 1-like [Cuc	0.986	0.798	0.770	0.0
70780055	886	ethylene overproducer-like 1 [Solanum ly	0.983	0.800	0.761	0.0
350539533	886	ethylene-overproducer1-like protein [Sol	0.983	0.800	0.758	0.0
356572224	886	PREDICTED: ETO1-like protein 1-like [Gly	0.983	0.800	0.742	0.0
356504961	888	PREDICTED: ETO1-like protein 1-like [Gly	0.984	0.799	0.748	0.0
224082686	787	predicted protein [Populus trichocarpa]	0.844	0.773	0.811	0.0
356500164	886	PREDICTED: ETO1-like protein 1-like [Gly	0.983	0.800	0.733	0.0

>gi|359495432|ref|XP_002280519.2| PREDICTED: ETO1-like protein 1-like [Vitis vinifera] gi|296084480|emb|CBI25039.3| unnamed protein product [Vitis vinifera]

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/712 (82%), Positives = 643/712 (90%), Gaps = 3/712 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           M+  FPS+SCKE+QLN FNPQSWLQVERGKLSK SS   SSSSIES IKVPEP ILP +K
Sbjct: 1   MKNLFPSESCKETQLNAFNPQSWLQVERGKLSKFSS--QSSSSIESLIKVPEPPILPFFK 58

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLAQIHEELE CP QERS+LYLLQFQVF+GLGE KLMRRSLR AWQ+ASTV EK
Sbjct: 59  PVDYVEVLAQIHEELESCPPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQRASTVQEK 118

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           L+FGAWLKYEKQGEELIADLL +C KC QEFGPIDIAS L  D N + S+E V M+G+++
Sbjct: 119 LIFGAWLKYEKQGEELIADLLASCGKCAQEFGPIDIASQLPADSNTS-SNEAVVMNGNEI 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
           L+ V+FRI +EKI CDRQK A LSAPF AMLNG F ESL EDIDLSENNISPSG+R I +
Sbjct: 178 LKTVIFRIGDEKIVCDRQKIAGLSAPFHAMLNGCFTESLQEDIDLSENNISPSGMRAIHE 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           F +TGSL  V P+LLLEILIF NKFCCERLKDAC RKLASLV+SR+DAVEL+ YA+EENS
Sbjct: 238 FCMTGSLGEVPPDLLLEILIFGNKFCCERLKDACGRKLASLVSSRDDAVELIDYALEENS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
           PVLA SCLQVFL ELPDCLND RV+EI S ANRQ RSIMVG ASFSLYC LSEVAM LDP
Sbjct: 298 PVLAASCLQVFLHELPDCLNDNRVLEILSDANRQQRSIMVGPASFSLYCFLSEVAMALDP 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
           RSD T CFLERL+ESAE+ RQRLLA HQLGCVRLLRKEYDEAE LFEAA+NAGH+YS+AG
Sbjct: 358 RSDTTACFLERLVESAESSRQRLLACHQLGCVRLLRKEYDEAEQLFEAALNAGHVYSVAG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           L RLGY+KGHKLW+Y+KL+SVISS TPLGWMYQERSLYCEGDKRWEDL+KAT LDPTL+Y
Sbjct: 418 LVRLGYLKGHKLWSYDKLSSVISSFTPLGWMYQERSLYCEGDKRWEDLEKATELDPTLTY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYRA+SLM KQNV+AALAEIN++LGFKLALECLELRFCF+LA+E+Y+AA CDVQAILT
Sbjct: 478 PYMYRAASLMRKQNVQAALAEINQVLGFKLALECLELRFCFYLAVENYEAAFCDVQAILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           LSPDYRMFEGRVAASQL MLVREH+++WT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LSPDYRMFEGRVAASQLRMLVREHVESWTTADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERLVYEGWILYDT HCEEGLRK
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASNEHERLVYEGWILYDTGHCEEGLRK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           AEESI +KRSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKG
Sbjct: 658 AEESIGLKRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKG 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559841|ref|XP_002520939.1| conserved hypothetical protein [Ricinus communis] gi|223539776|gb|EEF41356.1| conserved hypothetical protein [Ricinus communis]

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/713 (81%), Positives = 639/713 (89%), Gaps = 2/713 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIK-VPEPRILPNY 59
           M+T F  +SCKESQL+  NPQSWLQVERGKLSKLSS +SSSSS    +  VPEP +LP +
Sbjct: 1   MKTLFLPESCKESQLDALNPQSWLQVERGKLSKLSSCSSSSSSSIDSLIKVPEPPVLPFF 60

Query: 60  KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
           KPVDYVEVLAQIHEELE C  QERS+LYLLQFQVF+GLGE KLMRRSLR AWQK+STVHE
Sbjct: 61  KPVDYVEVLAQIHEELESCSPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKSSTVHE 120

Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
           K+VFGAWLKYEKQGEELIADLL  C KC QEFGPIDI S L  D++ + S ET+  + D 
Sbjct: 121 KVVFGAWLKYEKQGEELIADLLATCGKCAQEFGPIDIVSQLHIDLSFSAS-ETILTNADS 179

Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
            LRNV+F I +EKI CDR+K + LSAPF AMLNG F+ESLCE+ID SENNISP   ++IS
Sbjct: 180 KLRNVIFSIGDEKIVCDRKKISGLSAPFHAMLNGCFLESLCENIDFSENNISPFSFKMIS 239

Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
           +FSV GSLN V    LLEILIFANKFCCERLKDACDRKLASLV+S+EDAVELM YA++EN
Sbjct: 240 EFSVKGSLNEVPLENLLEILIFANKFCCERLKDACDRKLASLVSSKEDAVELMEYALQEN 299

Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
           SPVLA SCLQVFL ELPDCLNDERVVEIFSHA +Q R IMVG ASFSLYCLLSEVAMNLD
Sbjct: 300 SPVLAASCLQVFLHELPDCLNDERVVEIFSHAGKQERMIMVGAASFSLYCLLSEVAMNLD 359

Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
           PRS+KT CFLERL+ESAET+RQ+LLAFHQLGCVRLLRKEYDEAE LFEAA++AGH+YS++
Sbjct: 360 PRSNKTACFLERLVESAETNRQKLLAFHQLGCVRLLRKEYDEAERLFEAALSAGHLYSVS 419

Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
           GLARLG +KGH+LWAY+KL+SVISSVTPLGWMYQERSLYCEGDK+ EDL KAT LDPTL+
Sbjct: 420 GLARLGCVKGHRLWAYDKLSSVISSVTPLGWMYQERSLYCEGDKKCEDLQKATELDPTLT 479

Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
           YPYM+RA+SLM KQNV+AALAEINR+LGFKLALECLELRFCF+LALEDYQAALCDVQAIL
Sbjct: 480 YPYMFRAASLMRKQNVQAALAEINRVLGFKLALECLELRFCFYLALEDYQAALCDVQAIL 539

Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
           TLSPDYRMFEGRVAA QL  LVREH+ NWT ADCW+QLY+RWSSVDDIGSLSVIYQMLES
Sbjct: 540 TLSPDYRMFEGRVAAFQLRTLVREHVGNWTTADCWIQLYERWSSVDDIGSLSVIYQMLES 599

Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
           +APKGVLYFRQSLLLLRLNCPEAAM+SLQLARQHA+++HERLVYEGWILYDT HCEEGLR
Sbjct: 600 EAPKGVLYFRQSLLLLRLNCPEAAMQSLQLARQHASTEHERLVYEGWILYDTGHCEEGLR 659

Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           KAEESI++ RSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKG
Sbjct: 660 KAEESIKINRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKG 712

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455250|ref|XP_004145366.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] gi|449473087|ref|XP_004153780.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus]

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/714 (77%), Positives = 621/714 (86%), Gaps = 3/714 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS  +SSSSSIES IKVPEP ILP +K
Sbjct: 1   MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSL-HSSSSSIESLIKVPEPPILPYFK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLAQIHEELE CP  ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60  PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
           L+FGAWLKYEKQGEE+I DLL  C+KC QE+GP+DI++   L T ++    ++  +  G 
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179

Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
            + ++V F+I++E I CDR+K + LSAPF AMLNG F ES  E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239

Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
            +FS TG+L  V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299

Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
           +  +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359

Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
           DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419

Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
            GLARL  I G+K W+ + L SVIS+  PLGWMYQERSLYC+ +K+  DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479

Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
           +YPYMYRA+SLM KQ+V AALAEINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALAEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539

Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
           LTLSPDYRMFEG+ AASQL  LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599

Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
           SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659

Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           +KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKG
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKG 713

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526563|ref|XP_004170283.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus]

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/714 (77%), Positives = 620/714 (86%), Gaps = 3/714 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS  +SSSSSIES IKVPEP ILP +K
Sbjct: 1   MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSL-HSSSSSIESLIKVPEPPILPYFK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLAQIHEELE CP  ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60  PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
           L+FGAWLKYEKQGEE+I DLL  C+KC QE+GP+DI++   L T ++    ++  +  G 
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179

Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
            + ++V F+I++E I CDR+K + LSAPF AMLNG F ES  E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239

Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
            +FS TG+L  V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299

Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
           +  +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359

Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
           DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419

Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
            GLARL  I G+K W+ + L SVIS+  PLGWMYQERSLYC+ +K+  DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479

Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
           +YPYMYRA+SLM KQ+V AAL EINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALTEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539

Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
           LTLSPDYRMFEG+ AASQL  LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599

Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
           SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659

Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           +KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKG
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKG 713

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70780055|gb|AAZ08351.1| ethylene overproducer-like 1 [Solanum lycopersicum]

 Score = 1094 bits (2830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/712 (76%), Positives = 620/712 (87%), Gaps = 3/712 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTFFPS+SCKE+ L   NPQSWLQVERGKL+K+SS   S+SSI+S IKVPEP ILP +K
Sbjct: 1   MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISS--ESASSIDSLIKVPEPPILPFFK 58

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYV+VLA+IHEELE C  QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59  PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS +     ++ SH  ++ + D  
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
            R V FRI +EKI CDRQK A+LSAPF  MLNG F ES CE+IDLSENNISP  +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+  A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
           PVLA SCLQVFLRELPD L D +VVE+ S+  RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
           RSD++V FL  L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           LARLG I+GHK WAYEKL SVISS  PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           L PDYR+FEGRVAASQL  L+REH++NWT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPDYRVFEGRVAASQLRTLLREHVENWTEADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKG
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKG 709

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539533|ref|NP_001234175.1| ethylene-overproducer1-like protein [Solanum lycopersicum] gi|78707376|gb|ABB46489.1| ethylene-overproducer1-like protein [Solanum lycopersicum]

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/712 (75%), Positives = 619/712 (86%), Gaps = 3/712 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTFFPS+SCKE+ L   NPQSWLQVERGKL+K+SS   S+SSI+S IKVPEP ILP +K
Sbjct: 1   MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISS--ESASSIDSLIKVPEPPILPFFK 58

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYV+VLA+IHEELE C  QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59  PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS +     ++ SH  ++ + D  
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
            R V FRI +EKI CDRQK A+LSAPF  MLNG F ES CE+IDLSENNISP  +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+  A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
           PVLA SCLQVFLRELPD L D +VVE+ S+  RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
           RSD++V FL  L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           LARLG I+GHK WAYEKL SVISS  PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           L P+YR+FEGRVAASQL  L+REH++NWT AD WLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPEYRVFEGRVAASQLRTLLREHVENWTEADWWLQLYDRWSSVDDIGSLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKG
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKG 709

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572224|ref|XP_003554270.1| PREDICTED: ETO1-like protein 1-like [Glycine max]

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/712 (74%), Positives = 603/712 (84%), Gaps = 3/712 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MR+FFP++SCKE+  N  NPQSWL +ERGKL KLSSH  SS+SIES IKVP+P ILP +K
Sbjct: 1   MRSFFPAESCKEAHPNALNPQSWLHIERGKLPKLSSH-PSSASIESLIKVPQPAILPFFK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLA+IHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHEK
Sbjct: 60  PVDYVEVLARIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           ++FGAWLKYEKQ EEL+ADLL  C KC +EF P+DIA HL  D+N   S E  + + +++
Sbjct: 120 IIFGAWLKYEKQEEELMADLLAACGKCAKEFAPVDIAFHLPFDVN--ASSEGRTTNENRI 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
            +NV F I  EKI CDRQK + LSAPF AML G F ESL E IDLSENNISPSG++ ISD
Sbjct: 178 SQNVTFTIGSEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISD 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           FS+ GSL  V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+S
Sbjct: 238 FSLNGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEHS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
            VLA SCLQV LR+LP+C+ND RVVEIF HAN+Q   +MVG   F+L+C LSEV+MNL+ 
Sbjct: 298 SVLAASCLQVLLRDLPNCMNDNRVVEIFVHANKQQLEVMVGPGIFALFCFLSEVSMNLNS 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
            SD T  FLERL+E AE  +QRLLA HQLGCVRLLRKEYDEA  LFE AVNAGH+YS+AG
Sbjct: 358 SSDTTAHFLERLVEFAENGKQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHMYSVAG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           LARL YIKG KL +Y +L+SVISSVT LGWMYQERSLYC+GDKRWEDL+KA+ LDPTL Y
Sbjct: 418 LARLDYIKGDKLLSYGQLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYRA++LM  QN  AALAEINRILGFKL+LECLE+RF   L+LEDY+AALCDVQ ILT
Sbjct: 478 PYMYRAATLMRTQNAHAALAEINRILGFKLSLECLEIRFFIHLSLEDYKAALCDVQTILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           L  DYRMFEGRVAASQL  LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLESD
Sbjct: 538 LRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KG+LYFRQSLLLLRLNCPEAAMRSL LARQHA+S+HERLVYEGWILYDT H EEGL+K
Sbjct: 598 AAKGILYFRQSLLLLRLNCPEAAMRSLLLARQHASSEHERLVYEGWILYDTGHYEEGLQK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           AEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKG
Sbjct: 658 AEESIDIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKG 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504961|ref|XP_003521261.1| PREDICTED: ETO1-like protein 1-like [Glycine max]

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/713 (74%), Positives = 604/713 (84%), Gaps = 3/713 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSS-IESFIKVPEPRILPNY 59
           MR+FFP++SCKE+  N  NPQSWLQ+ERGKL KLSS +  SS+ IES IKVP+P ILP +
Sbjct: 1   MRSFFPAESCKEAHPNALNPQSWLQIERGKLPKLSSSSHPSSASIESLIKVPQPAILPFF 60

Query: 60  KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
           KPVDYVEVLAQIHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHE
Sbjct: 61  KPVDYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHE 120

Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
           K++FGAWLKYEKQ EELIADLL  C KC +EF P+DIAS L  D+N AGS E  + + + 
Sbjct: 121 KIIFGAWLKYEKQEEELIADLLAACGKCAKEFAPVDIASLLPFDVN-AGS-EGRTTNENC 178

Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
           + +NV F I  EKI C+RQK + LSAPF AML G F ESL E IDLSENNISPSG++ IS
Sbjct: 179 ISQNVTFTIGSEKIICERQKISELSAPFRAMLKGHFSESLSETIDLSENNISPSGMKAIS 238

Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
           DFS+ GSL  V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+
Sbjct: 239 DFSLNGSLIEVLPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEH 298

Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
           S VLA SCLQV LR+LP+CLND RVVEIF HAN+Q  ++MVG   F+L+C L EV+MNL+
Sbjct: 299 STVLAASCLQVLLRDLPNCLNDNRVVEIFVHANKQQLAVMVGPGIFTLFCFLGEVSMNLN 358

Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
             SD T   LERL+E AE D+QRLLA HQLGCVRLLRKEYDEA  LFE AVNAGHIYS+A
Sbjct: 359 SSSDTTAHILERLVEFAENDQQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHIYSVA 418

Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
           GLARL YIKG KL +Y +LNSVISSVTPLGWMYQERSLYC+GDKRWEDL+KA+ LDPTL 
Sbjct: 419 GLARLDYIKGDKLLSYGQLNSVISSVTPLGWMYQERSLYCDGDKRWEDLEKASNLDPTLI 478

Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
           YPY YRA+SLM  QN +AALAEINRILGFKL+ ECLE+RF   L+LEDY+AALCDVQ IL
Sbjct: 479 YPYTYRAASLMRTQNAQAALAEINRILGFKLSPECLEVRFFIHLSLEDYKAALCDVQTIL 538

Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
           TL  DYRMFEGRVAASQL  LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLES
Sbjct: 539 TLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLES 598

Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
           DA KG+LYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT H EEGL 
Sbjct: 599 DAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLW 658

Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           KAEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKG
Sbjct: 659 KAEESINIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKG 711

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082686|ref|XP_002306795.1| predicted protein [Populus trichocarpa] gi|222856244|gb|EEE93791.1| predicted protein [Populus trichocarpa]

 Score = 1028 bits (2659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/611 (81%), Positives = 556/611 (90%), Gaps = 2/611 (0%)

Query: 103 MRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQT 162
           MRRSLR AW K STVHEKLVFGAWLK+E+QGEELI+DLL  C KC QE G ID++S L  
Sbjct: 1   MRRSLRSAWLKGSTVHEKLVFGAWLKFERQGEELISDLLATCGKCAQESGQIDVSSDLDI 60

Query: 163 DINVAGSHETVSM-SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCE 221
           DI+ + S ETVSM +G  +LR+V F+I +EKI CDRQK A+LSAPF AMLNG F ESLCE
Sbjct: 61  DIS-SSSRETVSMMNGSHILRSVSFKIGDEKIVCDRQKIASLSAPFHAMLNGCFSESLCE 119

Query: 222 DIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
            IDLSENNISP G R IS+FS+TGSLN  +PN+LLE+LIFANKFCCERLKDACDRKLASL
Sbjct: 120 HIDLSENNISPLGFRAISEFSITGSLNEESPNVLLEMLIFANKFCCERLKDACDRKLASL 179

Query: 282 VASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVG 341
           V+SR+DAVELM  A+EENSPVLA SCLQVFL++LPDCLND+RVVEIFSHAN+Q + IMVG
Sbjct: 180 VSSRDDAVELMECALEENSPVLAASCLQVFLQDLPDCLNDDRVVEIFSHANKQEKMIMVG 239

Query: 342 LASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDE 401
            ASFSLYCLLSEVAMNLDP+SDKT CFL++L+ESA+T+RQ+LLAFHQLGCVRLLRKEYDE
Sbjct: 240 PASFSLYCLLSEVAMNLDPQSDKTACFLDQLVESAQTNRQKLLAFHQLGCVRLLRKEYDE 299

Query: 402 AEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461
           AE LFEAA+NAGHIYS++GLARLG I+GH+LWA++KL+SVISS TPLGWMY ERSL CEG
Sbjct: 300 AERLFEAALNAGHIYSVSGLARLGRIRGHRLWAFDKLSSVISSGTPLGWMYLERSLCCEG 359

Query: 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCF 521
           DKRWEDL+KAT LDPTL+YPYMYRA++LM +QNV+AALAEINRILGFKLALECLELRFCF
Sbjct: 360 DKRWEDLEKATELDPTLTYPYMYRAAALMRRQNVQAALAEINRILGFKLALECLELRFCF 419

Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
           +LALE+YQAA+CDVQAILTLSPDYRMFEGRVAASQL  LVREH++NWT ADCWLQLYDRW
Sbjct: 420 YLALENYQAAICDVQAILTLSPDYRMFEGRVAASQLRTLVREHVENWTTADCWLQLYDRW 479

Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
           SSVDD GSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERL
Sbjct: 480 SSVDDTGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASTEHERL 539

Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 701
           VYEGWILYDT HC EGL+KAEESI +K+SFEAFFLKAYALADSS D SCSSTV+SLLE+A
Sbjct: 540 VYEGWILYDTGHCNEGLQKAEESINIKKSFEAFFLKAYALADSSLDPSCSSTVISLLEEA 599

Query: 702 LKCPSDRLRKG 712
           LKCPSDRLRKG
Sbjct: 600 LKCPSDRLRKG 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500164|ref|XP_003518903.1| PREDICTED: ETO1-like protein 1-like [Glycine max]

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/712 (73%), Positives = 602/712 (84%), Gaps = 3/712 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTFF ++SCKE+Q N  NPQSWLQVERGKL KLSS  SSS+SIES IKVP+  ILP +K
Sbjct: 1   MRTFFTAESCKETQPNALNPQSWLQVERGKLPKLSS-QSSSASIESLIKVPQSPILPFFK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLAQIHEELE CP QE+S+L+LLQ+QVFKGLG+ KLMRRSLR AWQ+A+TVHEK
Sbjct: 60  PVDYVEVLAQIHEELESCPPQEKSNLFLLQYQVFKGLGDVKLMRRSLRSAWQRANTVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           ++FGAWLKYEKQ EEL+A LL  C KC +EFGPID+ S +  D NV  S +  SM+G+  
Sbjct: 120 IIFGAWLKYEKQ-EELVAQLLTACGKCEKEFGPIDVESQIPFDENVR-SQDRASMNGNNA 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
              V+F+I +EKI CDRQK + LSAPF AML G F ESL E IDLSENN+SPSG+R IS 
Sbjct: 178 SEYVIFKIGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETIDLSENNLSPSGMRAISY 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           FS TGSL  V PNLL+EIL FANK+CCERLK ACDR+LASLV+SREDA+ELM YA+++NS
Sbjct: 238 FSSTGSLLDVPPNLLVEILAFANKYCCERLKQACDRRLASLVSSREDALELMEYAVDQNS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
             LA SCLQV LR++P+CL+D +VVE+F HAN+Q  ++MVG   F+L+C LSEV+MNL+ 
Sbjct: 298 AGLAASCLQVLLRDIPNCLSDNQVVELFIHANKQQLAVMVGPGIFALFCFLSEVSMNLNS 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
            SD T  FLERL++ AE D+QRLLAFHQLGCVRL RKEYDEA  LFE A+N GH+YS+AG
Sbjct: 358 SSDTTAHFLERLVDFAENDKQRLLAFHQLGCVRLSRKEYDEAYCLFERALNVGHVYSVAG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           LARL  IKG KL +YEK++SVISS TPLGWMYQERSLYC+GD R +DL+KAT LDPTL Y
Sbjct: 418 LARLDSIKGEKLLSYEKISSVISSDTPLGWMYQERSLYCDGDLRQKDLEKATELDPTLIY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYR +SLM   NV+ ALAEINRILGFKL+LECLELRF  +LALEDY+AA+ DVQAILT
Sbjct: 478 PYMYRTASLMKTGNVQGALAEINRILGFKLSLECLELRFFIYLALEDYKAAVRDVQAILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           L P Y+MFEGRVAASQL  LVREH+++WT ADCW +LYD WS+VDDI SLSVIYQMLESD
Sbjct: 538 LCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KGVLYFRQSLLLLRLNCPEAAMRSLQLA QHA+S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHCEEGLQK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712
           AEESI +KRSFEA+FLKAYALADSS DSSCSSTV+SLLEDAL+CPSD LRKG
Sbjct: 658 AEESISIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALRCPSDNLRKG 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
TAIR|locus:2132402	888	EOL1 "ETO1-like 1" [Arabidopsi	0.983	0.798	0.673	1.8e-259
TAIR|locus:2074343	959	ETO1 "ETHYLENE OVERPRODUCER 1"	0.916	0.689	0.459	2.4e-153

TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2497 (884.0 bits), Expect = 1.8e-259, P = 1.8e-259
 Identities = 481/714 (67%), Positives = 568/714 (79%)

Query:     1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLXXXXXXXXXXXXXXXFIKVPEPRILPNYK 60
             MRTF+PSDSCKESQL+  NPQSWLQVERGKL               FIKVPEP+ILP+YK
Sbjct:     1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCRES-FIKVPEPQILPHYK 59

Query:    61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
             P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct:    60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119

Query:   121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
             +VFG+WL+YEKQGEE+I DLL +C K  +EF P+DIAS+       A S E  S+  ++ 
Sbjct:   120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177

Query:   180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
             V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++ 
Sbjct:   178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237

Query:   240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
             DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct:   238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297

Query:   300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
             SP+LA SCLQVFL E+PD LNDERVVE+ +  NR   S M G A FSLY  LSEV+M +D
Sbjct:   298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357

Query:   360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
             PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE  FE A N GH+YS  
Sbjct:   358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417

Query:   420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
             GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct:   418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477

Query:   479 SYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXXXXXXXXDYQAALCDVQAI 538
             +YPYMYRA + M+KQN +AAL EINRILGFK                 DY+AAL D+QA 
Sbjct:   478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537

Query:   539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
             LTL PDYRMF+G+VA  QL  LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct:   538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597

Query:   599 SDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
             SDA KGVLYFRQS      NCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct:   598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657

Query:   659 RKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLEDALKCPSDRLRKG 712
             +KA+ESI +KRSFEA+FL+AYALA              LLEDALKCPSDRLRKG
Sbjct:   658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKG 711

GO:0005634 "nucleus" evidence=ISM

GO:0010364 "regulation of ethylene biosynthetic process" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1478 (525.3 bits), Expect = 2.4e-153, Sum P(2) = 2.4e-153
 Identities = 309/672 (45%), Positives = 424/672 (63%)

Query:    52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
             EP+I P  K VD VE +AQ++  +E C   E+S  YL Q  +F+G+ + KL RRSLR + 
Sbjct:   109 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 168

Query:   112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
             Q A  VH K+V  +WL++E++ +ELI    ++C     E     + S    +        
Sbjct:   169 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 228

Query:   167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
             +G+  +  M+ D+      V  ++ F I +E++ C R K A+LS PF AML G F E   
Sbjct:   229 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 288

Query:   221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
               I+ ++N IS  G+R    FS T  L+   PN++LE+L  AN+FCC+ LK ACD  LA 
Sbjct:   289 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 348

Query:   281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
             LV S ++A+ L+ Y +EE + +L  +CLQVFLRELP  +++  V++IF  A  + R   +
Sbjct:   349 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 408

Query:   341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
             G ASF+LY  LS++AM  D +S+ TV  LERL+E A    ++ LA+HQLG V L RKEY 
Sbjct:   409 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 468

Query:   401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
             +A+  F AAV AGH+YS+ G+AR  + + H+  AY+ +NS+IS     GWM+QERSLYC 
Sbjct:   469 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 528

Query:   461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXX 520
             G ++  DLD AT  DPTL++PY +RA +L+ +    AA+AE+N+ILGFK           
Sbjct:   529 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 588

Query:   521 XXXXXXDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
                   DY+ AL D++A+LTL P++ MF  ++    +  L+R     W+ ADCW+QLYDR
Sbjct:   589 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 648

Query:   581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHER 640
             WSSVDDIGSL+V++ ML +D  K +L FRQS      NC +AAMRSL+LAR H+ S+HER
Sbjct:   649 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 708

Query:   641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLED 700
             LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALA              LL++
Sbjct:   709 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 768

Query:   701 ALKCPSDRLRKG 712
             ALKCPSD LRKG
Sbjct:   769 ALKCPSDGLRKG 780

GO:0005634 "nucleus" evidence=ISM

GO:0009693 "ethylene biosynthetic process" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010364 "regulation of ethylene biosynthetic process" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IPI

GO:0017145 "stem cell division" evidence=IMP

GO:2000069 "regulation of post-embryonic root development" evidence=IMP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQX6	ETOL1_ARATH	No assigned EC number	0.7170	0.9833	0.7984	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023796001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (874 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	721
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-04

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFS 242
           +V   +  +K    +   AA S  F A+ +  F ES   +I L +  +SP   R + +F 
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDD--VSPEDFRALLNFL 58

Query: 243 VTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
            TG L+ +    + E+L  A+      L + C+  L  L
Sbjct: 59  YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 54/298 (18%), Positives = 102/298 (34%), Gaps = 42/298 (14%)

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAA--VNAGHIYSI 418
           + DK +   ++L +    +       + LG + L + +  +A   FE A  +      + 
Sbjct: 446 QFDKALAAAKKLEKKQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502

Query: 419 AGLARLGYIKGHKLWA---YEKLNSVISSVTPLGWMYQERSLYC-----EGDKRWEDLDK 470
           A LAR+   +G+   A   +EK+  +      L  +     LY      E    W  L+K
Sbjct: 503 ANLARIDIQEGNPDDAIQRFEKV--LTIDPKNLRAILALAGLYLRTGNEEEAVAW--LEK 558

Query: 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQ 529
           A  L+P    P +  A   + K  ++ ALA +N        + E   +     LA  D  
Sbjct: 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618

Query: 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589
            A+   + +L L PD  +    +A +                             +   +
Sbjct: 619 KAVSSFKKLLALQPDSALALLLLADAY------------------------AVMKNYAKA 654

Query: 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647
           ++ + + LE            + LLL     E+A +  +  ++           EG +
Sbjct: 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	721
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.97
PHA02713	557	hypothetical protein; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
PHA03098	534	kelch-like protein; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.89
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PLN02789	320	farnesyltranstransferase	99.84
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.83
PRK12370	553	invasion protein regulator; Provisional	99.81
KOG1126	638	consensus DNA-binding cell division cycle control	99.81
PRK12370	553	invasion protein regulator; Provisional	99.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
PLN02789	320	farnesyltranstransferase	99.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.77
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.77
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.7
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
KOG1125	579	consensus TPR repeat-containing protein [General f	99.69
KOG2076	895	consensus RNA polymerase III transcription factor	99.68
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.68
KOG1129	478	consensus TPR repeat-containing protein [General f	99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.67
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
PRK14574	822	hmsH outer membrane protein; Provisional	99.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.63
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.63
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.63
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.62
KOG1125	579	consensus TPR repeat-containing protein [General f	99.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
PRK14574	822	hmsH outer membrane protein; Provisional	99.57
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.56
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.52
KOG2076	895	consensus RNA polymerase III transcription factor	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
KOG1129	478	consensus TPR repeat-containing protein [General f	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.46
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.44
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.42
KOG0553	304	consensus TPR repeat-containing protein [General f	99.4
KOG0553	304	consensus TPR repeat-containing protein [General f	99.4
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.36
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.36
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.33
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.32
PLN03218	1060	maturation of RBCL 1; Provisional	99.31
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.29
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.28
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.28
KOG2003	840	consensus TPR repeat-containing protein [General f	99.28
PLN03218	1060	maturation of RBCL 1; Provisional	99.28
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.28
PRK04841	903	transcriptional regulator MalT; Provisional	99.26
PLN03077	857	Protein ECB2; Provisional	99.25
PLN03077	857	Protein ECB2; Provisional	99.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.24
KOG2003	840	consensus TPR repeat-containing protein [General f	99.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.18
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.15
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.14
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.1
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.09
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.08
PRK11906	458	transcriptional regulator; Provisional	99.07
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.06
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.05
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.03
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
PRK04841	903	transcriptional regulator MalT; Provisional	99.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.99
PRK11906	458	transcriptional regulator; Provisional	98.99
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.95
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.93
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.92
KOG4555	175	consensus TPR repeat-containing protein [Function	98.9
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.87
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.83
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.82
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
KOG4234	271	consensus TPR repeat-containing protein [General f	98.78
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.74
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.72
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.7
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.68
KOG4234	271	consensus TPR repeat-containing protein [General f	98.65
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.62
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.58
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.54
PRK10803	263	tol-pal system protein YbgF; Provisional	98.51
PF12688	120	TPR_5: Tetratrico peptide repeat	98.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.45
PF13371	73	TPR_9: Tetratricopeptide repeat	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
PRK10803	263	tol-pal system protein YbgF; Provisional	98.44
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.41
PF12688	120	TPR_5: Tetratrico peptide repeat	98.41
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.35
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.34
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.34
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.33
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.31
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.3
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.25
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
KOG4555	175	consensus TPR repeat-containing protein [Function	98.23
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.17
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.17
PRK15331	165	chaperone protein SicA; Provisional	98.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.16
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.13
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.11
PRK15331	165	chaperone protein SicA; Provisional	98.11
KOG0511	516	consensus Ankyrin repeat protein [General function	98.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.09
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.09
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	98.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.07
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.06
PF13431	34	TPR_17: Tetratricopeptide repeat	98.02
PF13431	34	TPR_17: Tetratricopeptide repeat	98.02
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.01
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.89
PF13512	142	TPR_18: Tetratricopeptide repeat	97.89
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.86
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.83
PF13512	142	TPR_18: Tetratricopeptide repeat	97.82
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.8
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.8
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.79
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.77
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.63
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.62
KOG2716	230	consensus Polymerase delta-interacting protein PDI	97.61
PF13428	44	TPR_14: Tetratricopeptide repeat	97.56
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.54
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	97.52
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.52
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.48
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.48
KOG3473	112	consensus RNA polymerase II transcription elongati	97.47
KOG2471	696	consensus TPR repeat-containing protein [General f	97.43
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.41
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.37
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.37
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.33
KOG1586	288	consensus Protein required for fusion of vesicles	97.33
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.3
KOG1586	288	consensus Protein required for fusion of vesicles	97.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.24
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.21
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.2
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.12
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.08
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.07
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.03
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.02
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.0
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.98
PF13428	44	TPR_14: Tetratricopeptide repeat	96.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.81
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.74
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.72
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.72
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.58
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.49
KOG2838	401	consensus Uncharacterized conserved protein, conta	96.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.31
KOG1585	308	consensus Protein required for fusion of vesicles	96.29
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.25
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.22
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.14
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.98
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	95.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.92
PRK10941	269	hypothetical protein; Provisional	95.88
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	95.86
PRK10941	269	hypothetical protein; Provisional	95.85
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.83
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.82
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.78
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.57
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.56
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.51
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.47
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.36
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.35
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.3
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.27
COG4941	415	Predicted RNA polymerase sigma factor containing a	95.25
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.24
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.1
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	95.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.02
KOG2714	465	consensus SETA binding protein SB1 and related pro	94.86
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.83
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.77
KOG1310	758	consensus WD40 repeat protein [General function pr	94.66
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.45
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.43
KOG1310	758	consensus WD40 repeat protein [General function pr	94.4
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.95
KOG2471	696	consensus TPR repeat-containing protein [General f	93.93
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	93.8
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.76
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.7
KOG1585	308	consensus Protein required for fusion of vesicles	93.65
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.12
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.12
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.94
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.71
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.59
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.45
COG2912	269	Uncharacterized conserved protein [Function unknow	92.32
COG4941	415	Predicted RNA polymerase sigma factor containing a	92.07
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	92.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.58
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.42
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	91.38
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.73
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.5
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.29
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.94
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.35
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.08
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.97
COG2912	269	Uncharacterized conserved protein [Function unknow	88.88
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.41
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.93
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.86
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	87.81
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.72
KOG0511	516	consensus Ankyrin repeat protein [General function	87.59
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	87.53
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.36
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	87.32
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	87.31
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.02
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.87
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.71
KOG3364	149	consensus Membrane protein involved in organellar	86.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.61
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.19
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.81
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.24
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.56
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.28
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.89
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	82.86
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.67
COG1747	711	Uncharacterized N-terminal domain of the transcrip	82.23
KOG3840	438	consensus Uncharaterized conserved protein, contai	81.98
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	81.51
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.28
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	80.72
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	80.53

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-36  Score=327.88  Aligned_cols=296  Identities=17%  Similarity=0.085  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc--
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--  458 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~--  458 (721)
                      +++|-++|++...+|+.-+|+..|++|++++  ..+||+++|+||-..+.++.|+..|.+|+...|+.+.+|-|.+-+  
T Consensus       218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy  297 (966)
T KOG4626|consen  218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY  297 (966)
T ss_pred             eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence            6889999999999999999999999999995  567899999999999999999999999999999766665444321  


Q ss_pred             --CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          459 --CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       459 --~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                        |..+-||..|++||+++|++++||+|+|+++-+.|+..||...|++||.+.|+ ++..+++|.++.++|.+++|++-|
T Consensus       298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly  377 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY  377 (966)
T ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence              23399999999999999999999999999999999999999999999999998 899999999999999999999999


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL  615 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~  615 (721)
                      .++++..|.+.      ++.+.++.+...+...++|                  +.+|..||.++|..++++.|+|+++-
T Consensus       378 ~~al~v~p~~a------aa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~k  433 (966)
T KOG4626|consen  378 LKALEVFPEFA------AAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTYK  433 (966)
T ss_pred             HHHHhhChhhh------hhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHHH
Confidence            99999999984      4555555555555555555                  89999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc--CCC-CCch
Q 004984          616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS--SQD-SSCS  691 (721)
Q Consensus       616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~--~~~-~~~~  691 (721)
                      .+|+..+|+.+|.+|+..+|..+||+.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-|++-++-=-  ..| ..--
T Consensus       434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~  513 (966)
T KOG4626|consen  434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM  513 (966)
T ss_pred             HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 999999876321  122 1223


Q ss_pred             hhHHHHHHHhh
Q 004984          692 STVVSLLEDAL  702 (721)
Q Consensus       692 ~~~~~~~~~~~  702 (721)
                      .++++..+|-+
T Consensus       514 ~kl~sivrdql  524 (966)
T KOG4626|consen  514 KKLVSIVRDQL  524 (966)
T ss_pred             HHHHHHHHHHH
Confidence            56677766655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-35  Score=318.29  Aligned_cols=338  Identities=15%  Similarity=0.098  Sum_probs=295.5

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984          363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS  440 (721)
Q Consensus       363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~  440 (721)
                      +....+.+.++++.+++   ..+|.++|.++...|+...|..+|..||.++|  ..+...+|.+.-..|+..+|..+|.+
T Consensus       133 ~~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk  209 (966)
T KOG4626|consen  133 QDALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK  209 (966)
T ss_pred             HHHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence            34445556666665654   57888999999999999999999999999976  66788899999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 004984          441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL  515 (721)
Q Consensus       441 aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~  515 (721)
                      ||+..|.++.+|.+.|-.    |....||..|++|+.|||++.+||+|+|++|-+.+++++|+..|.||+.+.|+ ...+
T Consensus       210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~  289 (966)
T KOG4626|consen  210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH  289 (966)
T ss_pred             HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc
Confidence            999999877777777642    44499999999999999999999999999999999999999999999999997 6667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh-hHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhccccccc
Q 004984          516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG-RVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVDD  586 (721)
Q Consensus       516 ~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~-~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~dd  586 (721)
                      -+.+.+|.++|+.+-||..|+++|+++|++..++. -+.+....|.+.+.++-+.+        ||++.+|+........
T Consensus       290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~  369 (966)
T KOG4626|consen  290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK  369 (966)
T ss_pred             cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence            78999999999999999999999999999977554 44577777888777776555        5667788888778888


Q ss_pred             cc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          587 IG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       587 ~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ++ |...|..+|+..|..+.+++|+|.++..+|...+|+..|+.|++++|..++++.|+|..|-.+|+.++|++.|++||
T Consensus       370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            88 88899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCC
Q 004984          666 QMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD  707 (721)
Q Consensus       666 ~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (721)
                      .++|.|+ |+.|.|-+.-||+==|+    -|+--++|||=--|
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGni~~----AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGNIPE----AIQSYRTALKLKPD  488 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCCcHH----HHHHHHHHHccCCC
Confidence            9999999 99999999999875443    57778888875444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=300.60  Aligned_cols=219  Identities=19%  Similarity=0.263  Sum_probs=196.3

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +...+.+|||++.+++++|+|||+||||+||||++||+++|+|+.+.+|+|.+  |++.+|..+++|+|||++. ++.+|
T Consensus        30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~-i~~~n  106 (571)
T KOG4441|consen   30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLE-ISEDN  106 (571)
T ss_pred             HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEE-echHh
Confidence            56889999999999999999999999999999999999999999999999994  9999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE  326 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~  326 (721)
                      |++||.+|++||++.+++.|++||.++++ ++||+++..+|+.|+|++|......++.+||.+        .|+.+++.+
T Consensus       107 Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~  185 (571)
T KOG4441|consen  107 VQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG  185 (571)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence            99999999999999999999999999995 899999999999999999999999999888865        788999999


Q ss_pred             HhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHH---hhhHHHHHHHHH-HHHHHHHHhccchHHH
Q 004984          327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE---SAETDRQRLLAF-HQLGCVRLLRKEYDEA  402 (721)
Q Consensus       327 ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~---~a~~~lq~~la~-~~lG~~~~~~g~y~eA  402 (721)
                      ++++++++     |..|+.++.++++||++|...|..++..+|+. ++   +++.++.+.+.. -.+.....++.-..+|
T Consensus       186 ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea  259 (571)
T KOG4441|consen  186 LLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA  259 (571)
T ss_pred             hccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence            99999996     88899999999999999998889999999998 55   445555554433 2334445555666777


Q ss_pred             H
Q 004984          403 E  403 (721)
Q Consensus       403 ~  403 (721)
                      .
T Consensus       260 ~  260 (571)
T KOG4441|consen  260 K  260 (571)
T ss_pred             H
Confidence            6

>PHA02713 hypothetical protein; Provisional

Probab=99.97  E-value=4.1e-30  Score=296.59  Aligned_cols=189  Identities=14%  Similarity=0.236  Sum_probs=170.6

Q ss_pred             ccCCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCCCCcCC-cceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984          175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP  252 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~-~~~~~aHr~vLAa~S~yF~amF~~~~~Es~-~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~  252 (721)
                      +..++.+|||+|+|+ |++|+|||.||||+|+||++||+++|+|+. +.+|+|.  ++++++|+.||+|+|||+   ++.
T Consensus        19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~   93 (557)
T PHA02713         19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS   93 (557)
T ss_pred             HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence            457788999999997 899999999999999999999999999875 7899998  599999999999999996   568


Q ss_pred             HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHH
Q 004984          253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV  324 (721)
Q Consensus       253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v  324 (721)
                      +||++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+++.+||.+        .|+.+++
T Consensus        94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l  172 (557)
T PHA02713         94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL  172 (557)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence            9999999999999999999999999999995 899999999988899989999999999999865        6888999


Q ss_pred             HHHhcccc-ccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 004984          325 VEIFSHAN-RQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA  376 (721)
Q Consensus       325 ~~ll~~~~-~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a  376 (721)
                      .++|++++ ++     |..|+.+++++++||+||+..|. +..+||++ +|++
T Consensus       173 ~~lL~~d~~l~-----v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~  218 (557)
T PHA02713        173 FDIISTNDNVY-----LYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ  218 (557)
T ss_pred             HHHhccccccC-----CCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence            99999987 43     88899999999999999987554 45688877 5654

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=3.7e-30  Score=292.43  Aligned_cols=174  Identities=14%  Similarity=0.123  Sum_probs=155.8

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +.-.+.+|||++++|+ +|+|||+|||++||||++||+++|+|+++ +|++...+|++++|+.||+|+|||++. ++.+|
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~n   92 (480)
T PHA02790         16 LSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHN   92 (480)
T ss_pred             HHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-Eeccc
Confidence            3457889999998765 79999999999999999999999999965 566531259999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCCh--HH-----HHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ER-----VVEI  327 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~--~~-----v~~l  327 (721)
                      |++||.+|++||++.+++.|++||.+.++ ++||++++.+|..|+++.|.+.+.+++.+||.+....  ++     +.++
T Consensus        93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~l  171 (480)
T PHA02790         93 VVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLI  171 (480)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHh
Confidence            99999999999999999999999999995 8999999999999999999999999999999875432  22     4678


Q ss_pred             hccccccchhhhcccchhhHHHHHHHhhhc
Q 004984          328 FSHANRQHRSIMVGLASFSLYCLLSEVAMN  357 (721)
Q Consensus       328 l~~~~~~~r~~~v~~~~~~~~~~l~wV~~d  357 (721)
                      |++++++     |..|+.+++++++||+++
T Consensus       172 Lssd~L~-----v~~Ee~V~eav~~Wl~~~  196 (480)
T PHA02790        172 LESDELN-----VPDEDYVVDFVIKWYMKR  196 (480)
T ss_pred             cccccCC-----CccHHHHHHHHHHHHHhh
Confidence            9999885     889999999999999985

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=6.4e-27  Score=273.94  Aligned_cols=283  Identities=13%  Similarity=0.061  Sum_probs=238.9

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...+++++++.++    ...+.++|.++..+|++++|+.+|++||+++|  ..+++.+|.++..+|++++|+.+|
T Consensus       142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~  217 (615)
T TIGR00990       142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL  217 (615)
T ss_pred             CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            556777788887776553    45688999999999999999999999999954  457888999999999999998887


Q ss_pred             HHHHhcCC---------------------------------------------------------------CcHHHHHHH
Q 004984          439 NSVISSVT---------------------------------------------------------------PLGWMYQER  455 (721)
Q Consensus       439 ~~aI~~~~---------------------------------------------------------------~~~~ay~~r  455 (721)
                      ..+....+                                                               ..+.++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (615)
T TIGR00990       218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL  297 (615)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence            65543221                                                               111111222


Q ss_pred             hh-------cCChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984          456 SL-------YCEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA  524 (721)
Q Consensus       456 g~-------~~~~~eAl~d~~kAieL---dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~  524 (721)
                      |.       .+.+++|+..|++|+++   +|+.+.+|.++|.++..+|++++|+..|+++|+++|+ +..+..+|.++..
T Consensus       298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~  377 (615)
T TIGR00990       298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE  377 (615)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            11       12458999999999987   5889999999999999999999999999999999997 7788899999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG  604 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~  604 (721)
                      +|++++|+.+|+++++++|++..      +...++.+.....++++|                  +.+++++++++|.+.
T Consensus       378 ~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A------------------~~~~~kal~l~P~~~  433 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKLNSEDPD------IYYHRAQLHFIKGEFAQA------------------GKDYQKSIDLDPDFI  433 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCccCH
Confidence            99999999999999999999843      444555555555566666                  889999999999999


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                      .+++++|.++.++|++++|+..++++++..|+++++++++|.++.++|++++|+..|++|++++|.+
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=3.8e-26  Score=267.42  Aligned_cols=312  Identities=15%  Similarity=0.100  Sum_probs=229.3

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh------------------------
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------------------------  416 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------------------------  416 (721)
                      +.+.+...++.++...++.   ..+++.+|.++...|+|++|+.+|.+++.+++..                        
T Consensus       175 ~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l  251 (615)
T TIGR00990       175 DWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEIL  251 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666654433   5688999999999999999999887665432100                        


Q ss_pred             --------hHhhHHHH--------------------------H----------HHhCCHHHHHHHHHHHHhc---CCCcH
Q 004984          417 --------SIAGLARL--------------------------G----------YIKGHKLWAYEKLNSVISS---VTPLG  449 (721)
Q Consensus       417 --------A~~~lg~~--------------------------~----------~~~G~~~~A~~~~~~aI~~---~~~~~  449 (721)
                              ++..+|..                          +          ...+++++|++.|++++..   .|+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a  331 (615)
T TIGR00990       252 ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA  331 (615)
T ss_pred             hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence                    00011110                          0          1136789999999999986   47788


Q ss_pred             HHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984          450 WMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA  524 (721)
Q Consensus       450 ~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~  524 (721)
                      .+|..+|.+    ++.++|+.+|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ++.++.+|.++..
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            888888753    67799999999999999999999999999999999999999999999999996 8889999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG  604 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~  604 (721)
                      +|++++|+.+|+++++++|++..      +...++.+.....++++|                  +..+++++..+|.++
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~------~~~~la~~~~~~g~~~eA------------------~~~~~~al~~~P~~~  467 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIF------SHIQLGVTQYKEGSIASS------------------MATFRRCKKNFPEAP  467 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCh
Confidence            99999999999999999999854      233333333333444444                  667777777777777


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWILYD-TSHCEEGLRKAEESIQMKRSFE-AFFL  676 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~Ly~-~G~~deAl~~ye~Ai~i~~~~~-a~~~  676 (721)
                      .+++++|.++..+|++++|+..|++|++++|++...+      ++.+.+++. .|++++|+..+++|+.++|++. ++..
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~  547 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT  547 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            7777777777777777777777777777777644332      333444444 5777777777777777777776 6666


Q ss_pred             HHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          677 KAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      .|.++...+-    -..-|.++|.|++
T Consensus       548 la~~~~~~g~----~~eAi~~~e~A~~  570 (615)
T TIGR00990       548 MAQLLLQQGD----VDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHccC----HHHHHHHHHHHHH
Confidence            7766665442    3344556666654

>PHA03098 kelch-like protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=281.21  Aligned_cols=186  Identities=15%  Similarity=0.221  Sum_probs=173.3

Q ss_pred             CCCCCccEEEEE--cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       177 ~~~~~~DV~l~v--~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      .++.+|||+|++  +|++|+|||.|||++|+||++||+++|+   +.+|+|+  + ++++|+.+|+|+|||++. ++.++
T Consensus         5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~   77 (534)
T PHA03098          5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN   77 (534)
T ss_pred             ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence            378899999998  9999999999999999999999999997   5789998  5 999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE  326 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~  326 (721)
                      +++||.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..+++..|.+.|.+++..||..        .|+.+.+..
T Consensus        78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~  156 (534)
T PHA03098         78 VKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK  156 (534)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence            99999999999999999999999999995 899999999999999999999999999988854        678899999


Q ss_pred             HhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 004984          327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA  376 (721)
Q Consensus       327 ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a  376 (721)
                      +|++++++     |..|..++.++++|+.++...|..++.+||+. +|++
T Consensus       157 ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~  200 (534)
T PHA03098        157 ILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT  200 (534)
T ss_pred             HhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence            99999985     88899999999999999998888899999988 6643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=5.3e-24  Score=250.70  Aligned_cols=319  Identities=11%  Similarity=-0.025  Sum_probs=263.0

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +......+++..+.-.+.   ...+++++|.+....|++++|+..|+++++.+  +..++..+|.++...|++++|+..+
T Consensus        57 ~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l  133 (656)
T PRK15174         57 ETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA  133 (656)
T ss_pred             CcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344555666665544332   36788999999999999999999999999984  4567889999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-H
Q 004984          439 NSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-L  512 (721)
Q Consensus       439 ~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~-~  512 (721)
                      .++++++|++..++..++..    ++.++|+..|.+++.++|+++.++...+ .+...|++++|+..++++++.+| . .
T Consensus       134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~  212 (656)
T PRK15174        134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ  212 (656)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence            99999999999888888653    6679999999999999999999998765 48899999999999999999876 3 3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV  592 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~  592 (721)
                      ..+...+.++...|++++|+..|+++++++|++..      +...++.+.....++++|.              ..|+..
T Consensus       213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------~~~~Lg~~l~~~G~~~eA~--------------~~A~~~  272 (656)
T PRK15174        213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA------LRRSLGLAYYQSGRSREAK--------------LQAAEH  272 (656)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCchhhH--------------HHHHHH
Confidence            33344577889999999999999999999999843      3344444444444444321              024889


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ++++++++|+++.++.++|.++..+|++++|+..+++|++++|++++++.++|.++..+|++++|++.|+++++.+|+..
T Consensus       273 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        273 WRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             -HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCC
Q 004984          673 -AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD  707 (721)
Q Consensus       673 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (721)
                       ++...|.++...+    --..-+..++.|++.-.+
T Consensus       353 ~~~~~~a~al~~~G----~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        353 KWNRYAAAALLQAG----KTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHHHHCC----CHHHHHHHHHHHHHhChh
Confidence             4555788886654    344556677887765333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=1.3e-22  Score=241.65  Aligned_cols=334  Identities=16%  Similarity=0.118  Sum_probs=259.5

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+....+++++.+..+..   ...+..++..+...|++++|+..|+++++.  ++..++..+|.++...|++++|+..|
T Consensus       548 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  624 (899)
T TIGR02917       548 NEEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF  624 (899)
T ss_pred             CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4455566666655443322   345567888888889999999999988876  34556778888999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984          439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE  513 (721)
Q Consensus       439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~  513 (721)
                      +++++.+|+.+.++...+.    .++.++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|+ +.
T Consensus       625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  704 (899)
T TIGR02917       625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL  704 (899)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence            9999988887777776654    356689999999999999999999999999999999999999999998888885 66


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 004984          514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD  585 (721)
Q Consensus       514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~d  585 (721)
                      .+..+|.++...|++++|+..|+++++.+|+.....+.+.+....+......+.+++        ...+..+.......+
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g  784 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK  784 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            677788889999999999999999999998874433333333333222222222222        223344444444455


Q ss_pred             ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      +.. |+..|+++++.+|.++.++++.|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+|++++|+..|+++
T Consensus       785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555 7889999999999999999999999999999 77999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984          665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL  702 (721)
Q Consensus       665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (721)
                      ++++|+.. ++++.|.++...+-    -...+++++++|
T Consensus       864 ~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~  898 (899)
T TIGR02917       864 VNIAPEAAAIRYHLALALLATGR----KAEARKELDKLL  898 (899)
T ss_pred             HhhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence            99999766 88888888887643    445566666655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=1.4e-23  Score=247.13  Aligned_cols=285  Identities=14%  Similarity=0.002  Sum_probs=248.0

Q ss_pred             CCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHH
Q 004984          360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEK  437 (721)
Q Consensus       360 ~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~  437 (721)
                      .+.+.....+++++...++.   ..++..+|.++...|++++|+..|++|++++  +..++..+|.++...|++++|+..
T Consensus        90 g~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~  166 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL  166 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence            35567778888877765544   5577899999999999999999999999984  455778899999999999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHhh---cCChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984          438 LNSVISSVTPLGWMYQERSL---YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L  512 (721)
Q Consensus       438 ~~~aI~~~~~~~~ay~~rg~---~~~~~eAl~d~~kAieLdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~  512 (721)
                      +.+++...|+.+.++.....   .++.++|+..|+++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +
T Consensus       167 ~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~  246 (656)
T PRK15174        167 ARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA  246 (656)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            99999999988777655422   3566999999999999987 44455566789999999999999999999999996 7


Q ss_pred             HHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc
Q 004984          513 ECLELRFCFFLALEDYQA----ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG  588 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~ee----Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~  588 (721)
                      ..++++|.++..+|++++    |+..|+++++++|++.      .+...++.+.....++++|                 
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA-----------------  303 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKA-----------------  303 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHH-----------------
Confidence            888889999999999996    8999999999999983      4555556666666677777                 


Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                       +..++++++++|.++.++.++|.++.++|++++|+..|+++++.+|+++..+...|.++..+|++++|++.|+++++++
T Consensus       304 -~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        304 -IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             -HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             8899999999999999999999999999999999999999999999999888889999999999999999999999998


Q ss_pred             CCH
Q 004984          669 RSF  671 (721)
Q Consensus       669 ~~~  671 (721)
                      |+.
T Consensus       383 P~~  385 (656)
T PRK15174        383 ASH  385 (656)
T ss_pred             hhh
Confidence            873

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=1.7e-23  Score=260.87  Aligned_cols=307  Identities=11%  Similarity=-0.071  Sum_probs=224.2

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh----------------HhhHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS----------------IAGLARL  424 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A----------------~~~lg~~  424 (721)
                      +.+.....++++++..++.   ..+++.+|.++...|++++|+..|++|++.++...                ....|.+
T Consensus       284 ~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            4567777888877654433   56788999999999999999999999998854321                1234778


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH------------
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS------------  488 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~------------  488 (721)
                      +..+|++++|+..|+++++.+|+...++..+|..    ++.++|+..|++|++++|++..++.+++.+            
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            8899999999999999999999988888877653    566999999999999999998887665554            


Q ss_pred             ------------------------------HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          489 ------------------------------LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       489 ------------------------------l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                                                    +...|++++|+..|+++++++|+ +..++.++.++..+|++++|+..|++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~  520 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR  520 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                                          44679999999999999999996 77778899999999999999999999


Q ss_pred             HHhhCCCchhhh-hhHHHHH----------HHH---------------------------HHHHhhhhhhHH--------
Q 004984          538 ILTLSPDYRMFE-GRVAASQ----------LHM---------------------------LVREHIDNWTIA--------  571 (721)
Q Consensus       538 al~L~P~~~~~~-~~~~a~~----------~~~---------------------------~l~~~~~~~~~A--------  571 (721)
                      +++++|++.... ..+....          ...                           .......+.++|        
T Consensus       521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p  600 (1157)
T PRK11447        521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP  600 (1157)
T ss_pred             HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            999999885421 1110000          000                           000001111111        


Q ss_pred             ---HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          572 ---DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI  647 (721)
Q Consensus       572 ---~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~  647 (721)
                         ..++.+.+.....+++. |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|++..++..+|++
T Consensus       601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence               12223333333345555 66777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC
Q 004984          648 LYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       648 Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      +..+|++++|++.|++++++.|+
T Consensus       681 ~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhhCcc
Confidence            77777777777777777776543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.92  E-value=3.8e-22  Score=237.69  Aligned_cols=320  Identities=13%  Similarity=0.067  Sum_probs=204.3

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLN  439 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~  439 (721)
                      .+.....++++++..+..   ..+++++|.++...|++++|+..|+++++.+  +..++..++.++...|++++|+..+.
T Consensus       481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  557 (899)
T TIGR02917       481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE  557 (899)
T ss_pred             HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344455555555433322   3455667777777777777777777777663  34456667777777777777777777


Q ss_pred             HHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 004984          440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC  514 (721)
Q Consensus       440 ~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~  514 (721)
                      ++++.+|.....+...+.    .++.++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus       558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  637 (899)
T TIGR02917       558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA  637 (899)
T ss_pred             HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            777777765555544432    245588888888888888888888888888888888888888888888888885 666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhh--------hHHHHHHhhhhcccccc
Q 004984          515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNW--------TIADCWLQLYDRWSSVD  585 (721)
Q Consensus       515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~--------~~A~~~~~l~~~~~~~d  585 (721)
                      +...+.++..+|++++|+..|+++++.+|++.... ..+......+......+.+        .....|..++......+
T Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  717 (899)
T TIGR02917       638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK  717 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence            67778888888888888888888888888864321 1111111111111111111        11112222222222334


Q ss_pred             ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      ++. |+..+.+++..+|.+ ..+++.|.++.++|++++|+..++++++..|++..+++.+|.++..+|++++|+..|+++
T Consensus       718 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  796 (899)
T TIGR02917       718 DYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV  796 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            444 566666666666666 556666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhcCCCHH-HHHHHHHHhhccC
Q 004984          665 IQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       665 i~i~~~~~-a~~~~~~~~~~~~  685 (721)
                      +++.|++. +++..|+++....
T Consensus       797 ~~~~p~~~~~~~~l~~~~~~~~  818 (899)
T TIGR02917       797 VKKAPDNAVVLNNLAWLYLELK  818 (899)
T ss_pred             HHhCCCCHHHHHHHHHHHHhcC
Confidence            66666665 5565566555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=2.2e-22  Score=251.00  Aligned_cols=307  Identities=11%  Similarity=-0.012  Sum_probs=240.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--------------
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW--------------  450 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~--------------  450 (721)
                      ..+|..+...|++++|+..|++|++.+  ...++..+|.++..+|++++|+..|+++++..|+...              
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            356999999999999999999999985  4567889999999999999999999999999987532              


Q ss_pred             HHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH-------
Q 004984          451 MYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR-------  518 (721)
Q Consensus       451 ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R-------  518 (721)
                      .+..+|    ..++.++|+..|++|++++|+++.++..+|.++..+|++++|+..|++|++++|+ ...+..+       
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            112222    1255599999999999999999999999999999999999999999999999996 4443322       


Q ss_pred             -----------------------------------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 004984          519 -----------------------------------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE  563 (721)
Q Consensus       519 -----------------------------------~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~  563 (721)
                                                         +.++...|++++|+..|+++++++|++..      +...++.+..
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~  506 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLR  506 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Confidence                                               33455789999999999999999999854      2233333334


Q ss_pred             hhhhhhHHHHHHhhh---------------hccccccccc-hHHHHHH--------------------------------
Q 004984          564 HIDNWTIADCWLQLY---------------DRWSSVDDIG-SLSVIYQ--------------------------------  595 (721)
Q Consensus       564 ~~~~~~~A~~~~~l~---------------~~~~~~dd~~-al~~~~q--------------------------------  595 (721)
                      ...++++|...++-.               ..+...++.. |+..+++                                
T Consensus       507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            444444443222211               1111122222 4444433                                


Q ss_pred             --------HHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          596 --------MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       596 --------aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                              .++.+|.++.+++.+|.++.++|++++|+..|+++++++|++++++.++|.++...|++++|++.|++++++
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence                    245689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          668 KRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       668 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      .|+.. +.+..|.++....    -...-+++++.++.
T Consensus       667 ~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~  699 (1157)
T PRK11447        667 ANDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP  699 (1157)
T ss_pred             CCCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence            98876 7888888886533    24556667777765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=3e-22  Score=242.49  Aligned_cols=266  Identities=11%  Similarity=-0.036  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh-hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      ...+++++|.++.. +++.+|+..|.+++...|.. ...++|.++...|++++|+..|.+++...|... .+...|.   
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~all  553 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAANTAQ  553 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHHHHH
Confidence            45678999999987 89999999999999886543 234557777899999999999999877755433 3333332   


Q ss_pred             -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                       .++.++|+..|++|++++|++...+..++..+..+|++++|+..|++|++++|++..+.++|.++.++|++++|+..|+
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~  633 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR  633 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             3556999999999999999999999988888888999999999999999999998888899999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      ++++++|++.      .+...++.+.....++++|                  +..++++++++|+++.+++++|.++..
T Consensus       634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999994      3455555555555666666                  889999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA  673 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a  673 (721)
                      +|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|.--|
T Consensus       690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a  746 (987)
T PRK09782        690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI  746 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence            999999999999999999999999999999999999999999999999999998773

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.8e-22  Score=214.40  Aligned_cols=298  Identities=14%  Similarity=0.094  Sum_probs=248.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984          377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE  454 (721)
Q Consensus       377 ~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~  454 (721)
                      .+....+.++-+.|+-++..|.|++||++|.+||++.|.  -.|.+++-+|...|++.+-+++.++|++++|+...+++.
T Consensus       109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R  188 (606)
T KOG0547|consen  109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR  188 (606)
T ss_pred             HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            334455788889999999999999999999999999665  346789999999999999999999999999999999998


Q ss_pred             Hhh----cCChhHHHHHHHHHHhcCCCC----------------------------------------------------
Q 004984          455 RSL----YCEGDKRWEDLDKATALDPTL----------------------------------------------------  478 (721)
Q Consensus       455 rg~----~~~~~eAl~d~~kAieLdP~~----------------------------------------------------  478 (721)
                      |+.    ++..++|+.|.+ ++-+.-++                                                    
T Consensus       189 RA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~  267 (606)
T KOG0547|consen  189 RASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP  267 (606)
T ss_pred             HHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence            853    233344444321 11111111                                                    


Q ss_pred             ----------------------------------------------------------hHHHHHHHHHHHhcCCHHHHHH
Q 004984          479 ----------------------------------------------------------SYPYMYRASSLMTKQNVEAALA  500 (721)
Q Consensus       479 ----------------------------------------------------------~~ay~~rg~~l~~lg~~~eAl~  500 (721)
                                                                                +.++..||.-+.-.|++-+|..
T Consensus       268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~  347 (606)
T KOG0547|consen  268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE  347 (606)
T ss_pred             cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence                                                                      5677889999999999999999


Q ss_pred             HHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984          501 EINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD  579 (721)
Q Consensus       501 ~~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~  579 (721)
                      +|+++|+++|.+ ..+..|+.+|....+-++-..+|++|..+||+|..      +++.++.+.-.++++++|        
T Consensus       348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A--------  413 (606)
T KOG0547|consen  348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEA--------  413 (606)
T ss_pred             hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHH--------
Confidence            999999999974 44667999999999999999999999999999954      667777888888899999        


Q ss_pred             ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984          580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR  659 (721)
Q Consensus       580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~  659 (721)
                                +++|+++++++|.++.+|..++.++.|+++.+++|..|+.+.+.-|+-+|.+..-|.+|.++++|+.|+.
T Consensus       414 ----------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  414 ----------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             ----------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence                      8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC------HH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984          660 KAEESIQMKRS------FE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL  702 (721)
Q Consensus       660 ~ye~Ai~i~~~------~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (721)
                      .|++||.+.|.      .. -+-.||..+.--.   +--.--++||+.|+
T Consensus       484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~  530 (606)
T KOG0547|consen  484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAI  530 (606)
T ss_pred             HHHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHH
Confidence            99999999998      44 5667777766532   22333455555554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=2.5e-21  Score=212.82  Aligned_cols=292  Identities=16%  Similarity=0.034  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHhh
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL  457 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~----~~ay~~rg~  457 (721)
                      ...|.+|..+...|++++|+..|.++++.+|.  .++..+|.++..+|++++|+..+++++...+..    ..++...|.
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~  115 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ  115 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            44577899999999999999999999999654  467889999999999999999999988853221    233333332


Q ss_pred             ----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-H-----HHHHHHHHHHhcCC
Q 004984          458 ----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E-----CLELRFCFFLALED  527 (721)
Q Consensus       458 ----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~-----~~~~R~~~~~~lgd  527 (721)
                          .++.++|+..|+++++++|.+..++..+|.++...|++++|+..++++++..|.+ .     .+..++.++...|+
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence                1455999999999999999999999999999999999999999999999988752 1     23457788999999


Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhH
Q 004984          528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVL  606 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-~~~  606 (721)
                      +++|+..|+++++++|++.      .+...++.+.....++++|                  +..++++++.+|.+ ..+
T Consensus       196 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~~~  251 (389)
T PRK11788        196 LDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLSEV  251 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHHHH
Confidence            9999999999999999973      2444555555556666666                  78899999999987 467


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHhhccC
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF-LKAYALADSS  685 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~-~~~~~~~~~~  685 (721)
                      +..++.++..+|++++|+..++++++..|+.. .+..+|.++...|++++|+..++++++..|+...+. +-+..++...
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~  330 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE  330 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence            88999999999999999999999999999875 459999999999999999999999999999999665 3444443221


Q ss_pred             CCCCchhhHHHHHHHhh
Q 004984          686 QDSSCSSTVVSLLEDAL  702 (721)
Q Consensus       686 ~~~~~~~~~~~~~~~~~  702 (721)
                        ..-....+.++|+.+
T Consensus       331 --~g~~~~a~~~~~~~~  345 (389)
T PRK11788        331 --EGRAKESLLLLRDLV  345 (389)
T ss_pred             --CccchhHHHHHHHHH
Confidence              222334455555555

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=6.7e-21  Score=230.79  Aligned_cols=237  Identities=10%  Similarity=-0.055  Sum_probs=143.0

Q ss_pred             HHHHHHHHhcCCC--cHHHHHHHhhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          435 YEKLNSVISSVTP--LGWMYQERSLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK  509 (721)
Q Consensus       435 ~~~~~~aI~~~~~--~~~ay~~rg~~---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~  509 (721)
                      +..+.+++...|.  .+.+|+++|.+   ++.++|+..|.+++...|+.. ....+|.++...|++++|+..|++++...
T Consensus       461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~  539 (987)
T PRK09782        461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD  539 (987)
T ss_pred             HHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence            3444444444444  45555554432   223445555555555555432 23333444445555555555555555444


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH--------HHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984          510 LALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA--------ASQLHMLVREHIDNWTIADCWLQLYDRW  581 (721)
Q Consensus       510 P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~--------a~~~~~~l~~~~~~~~~A~~~~~l~~~~  581 (721)
                      |....+...|.++...|++++|+..|+++++++|++........        .......++..++.-..++.|..+....
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l  619 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIY  619 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            44333444455555555555555555555555555422111000        0000001111111111123333444444


Q ss_pred             ccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          582 SSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       582 ~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                      ...++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|++++|+..
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~  699 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY  699 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4444444 588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHH
Q 004984          661 AEESIQMKRSFE  672 (721)
Q Consensus       661 ye~Ai~i~~~~~  672 (721)
                      |++|++++|++.
T Consensus       700 l~~Al~l~P~~a  711 (987)
T PRK09782        700 ARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHhcCCCCc
Confidence            999999999885

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.7e-21  Score=207.66  Aligned_cols=307  Identities=14%  Similarity=0.140  Sum_probs=245.4

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHH-
Q 004984          363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLN-  439 (721)
Q Consensus       363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~-  439 (721)
                      +.+...-..++.+.++.   .+.|-|+.-+|...|++++-+++..+||+++|.|  |++-++.++..+|++++|+.+.+ 
T Consensus       132 ~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv  208 (606)
T KOG0547|consen  132 DEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV  208 (606)
T ss_pred             HHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence            34445555556544432   5677899999999999999999999999998777  46667889999999999977664 


Q ss_pred             -----------------HHHh-----------------------------------------------------------
Q 004984          440 -----------------SVIS-----------------------------------------------------------  443 (721)
Q Consensus       440 -----------------~aI~-----------------------------------------------------------  443 (721)
                                       +.+.                                                           
T Consensus       209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~  288 (606)
T KOG0547|consen  209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE  288 (606)
T ss_pred             HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence                             0000                                                           


Q ss_pred             ------------------------cCC--------CcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHH
Q 004984          444 ------------------------SVT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRAS  487 (721)
Q Consensus       444 ------------------------~~~--------~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~  487 (721)
                                              ...        +.+.++..+|-    .|..-+|-.||+++|.|+|.+...|..||.
T Consensus       289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~  368 (606)
T KOG0547|consen  289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAA  368 (606)
T ss_pred             hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHH
Confidence                                    000        01344444442    245588889999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhh
Q 004984          488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHI  565 (721)
Q Consensus       488 ~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~-a~~~~~~l~~~~  565 (721)
                      +|+++++.++-..+|++|..+||+ ++-||.||.++.-++++++|+.||+++++|+|.++..+.+.. +.+..+.+...-
T Consensus       369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m  448 (606)
T KOG0547|consen  369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM  448 (606)
T ss_pred             HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999995 899999999999999999999999999999999977665544 455555555555


Q ss_pred             hhhhHH--------HHHHhhhhccccccccc-hHHHHHHHHHhCCC------ChhHHHHHHHHHHH-cCChHHHHHHHHH
Q 004984          566 DNWTIA--------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP------KGVLYFRQSLLLLR-LNCPEAAMRSLQL  629 (721)
Q Consensus       566 ~~~~~A--------~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~------~~~~~~~~g~~L~~-lg~~eeAl~~~~~  629 (721)
                      ..++++        +++.=..+.+-+..+++ |+..|+.|+++.|.      ++-.+.++|.++.+ .++..+|+..+++
T Consensus       449 ~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K  528 (606)
T KOG0547|consen  449 KTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK  528 (606)
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence            555544        23333333344446666 88899999999999      88889999988776 6788899999999


Q ss_pred             HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      |++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+-++-.
T Consensus       529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~  571 (606)
T KOG0547|consen  529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES  571 (606)
T ss_pred             HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999988765

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.88  E-value=5e-23  Score=216.31  Aligned_cols=192  Identities=20%  Similarity=0.252  Sum_probs=157.7

Q ss_pred             CCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--CCCHHHH
Q 004984          178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--GVTPNLL  255 (721)
Q Consensus       178 ~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~--~i~~~~v  255 (721)
                      +...+||+|+|++++|+|||+|||++|.|||+|++|||.|+.+..|.+.+  ...++|+.+|+|||||+++  .+..+.+
T Consensus        41 ~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~l  118 (620)
T KOG4350|consen   41 SEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDIL  118 (620)
T ss_pred             cCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHHH
Confidence            56689999999999999999999999999999999999999999999995  7799999999999999987  2346789


Q ss_pred             HHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChHHHHHHhccccccc
Q 004984          256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQH  335 (721)
Q Consensus       256 ~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~~  335 (721)
                      ++.|.+|++|++..|..+-+++|...+. .+|+..+++.|..|+.++|...|++|+.+|-.+.|.++.+..+. .+.+.+
T Consensus       119 ld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LS-k~sL~e  196 (620)
T KOG4350|consen  119 LDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLS-KDSLKE  196 (620)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhh-HHHHHH
Confidence            9999999999999999999999999996 69999999999999999999999999988877766555444332 222221


Q ss_pred             hh---hhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhh
Q 004984          336 RS---IMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAE  377 (721)
Q Consensus       336 r~---~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~  377 (721)
                      .+   ....+|--.|.++.+|-+++....+   ..++ .++++|.
T Consensus       197 ~l~RDsFfApE~~IFlAv~~W~~~Nske~~---k~~~-~~VRLPL  237 (620)
T KOG4350|consen  197 LLARDSFFAPELKIFLAVRSWHQNNSKEAS---KVLL-ELVRLPL  237 (620)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCchhhH---HHHH-HHHhhhh
Confidence            11   1255677789999999998864322   2333 3466654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=7.5e-21  Score=212.41  Aligned_cols=263  Identities=14%  Similarity=0.144  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~-~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---  458 (721)
                      ..-++|..|+++++|++|.+.|+.+=++.|-.  .+-.... ++..+.+..-. ..-...|.-+|+.+..|...|++   
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls-~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS-YLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-HHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            34678888999999999999998875553311  1111122 23333333222 22245777889999999888865   


Q ss_pred             -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                       .+.+.|+..|.|||.+||++++||.-+|-=+.....++.|...|++||..+|. ..+|+-.|.+|.++|+++.|.-.|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence             34499999999999999999999999999999999999999999999999996 8899999999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      +|++++|.+      .....-.|...+...+.++|                  |..|++|+-+||.++...|.+|.+|.-
T Consensus       514 kA~~INP~n------svi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  514 KAVEINPSN------SVILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             hhhcCCccc------hhHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            999999998      33445556666666777777                  899999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +++++||+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|.=|..++|.=+
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999644

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.87  E-value=3.5e-20  Score=198.33  Aligned_cols=184  Identities=16%  Similarity=0.080  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+.+|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|+ ...+.++|.++...|++++|+.+|+++++
T Consensus        81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189         81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55566666777777777777777777777777777777777777777775 55566677777777777777777777777


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      ++|++..   +. ..   ..+.....++++|                  +..+.+++...+.  ..|. .+.+...+|+.
T Consensus       161 ~~P~~~~---~~-~~---~~l~~~~~~~~~A------------------~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~  212 (296)
T PRK11189        161 DDPNDPY---RA-LW---LYLAESKLDPKQA------------------KENLKQRYEKLDK--EQWG-WNIVEFYLGKI  212 (296)
T ss_pred             hCCCCHH---HH-HH---HHHHHccCCHHHH------------------HHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence            7777631   00 00   0011111222333                  4555554443222  2222 35555566665


Q ss_pred             HHH--H----HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHH
Q 004984          621 EAA--M----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SFEA  673 (721)
Q Consensus       621 eeA--l----~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-~~~a  673 (721)
                      .++  +    ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|..
T Consensus       213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            332  2    223334477777888888888888888888888888888888885 7663

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=1.9e-20  Score=200.37  Aligned_cols=235  Identities=13%  Similarity=0.026  Sum_probs=181.1

Q ss_pred             cchHHHHHHHHHHHhc---c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHH
Q 004984          397 KEYDEAEHLFEAAVNA---G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE  466 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~---~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~  466 (721)
                      ++.+.++..+.++|..   +   ...+++.+|.++...|++++|+..|+++++.+|+++.+|.++|.+    ++.++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4678888899998863   2   245688899999999999999999999999999999999999863    77799999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL-SPDY  545 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L-~P~~  545 (721)
                      .|++|++++|++..+|.++|.++...|++++|+.+|+++++++|+.........+....+++++|+..|++++.. +|+.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~  199 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ  199 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence            999999999999999999999999999999999999999999997432222223456788999999999877654 4443


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                      .   +...+...       ..+++.++.+..            +...++++++++|..+++|+++|.++.++|++++|+.
T Consensus       200 ~---~~~~~~~~-------lg~~~~~~~~~~------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        200 W---GWNIVEFY-------LGKISEETLMER------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             c---HHHHHHHH-------ccCCCHHHHHHH------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            1   11111111       122222210000            1223456678889999999999999999999999999


Q ss_pred             HHHHHHHhCC-CChhHHHHHHHHHHhcCC
Q 004984          626 SLQLARQHAA-SDHERLVYEGWILYDTSH  653 (721)
Q Consensus       626 ~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~  653 (721)
                      .|++|++++| ++.+..+-+..+....++
T Consensus       258 ~~~~Al~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        258 LFKLALANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence            9999999996 888877766665554444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=4.2e-19  Score=195.21  Aligned_cols=279  Identities=17%  Similarity=0.108  Sum_probs=227.3

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc------hhhHhhHHHHHHHhCCHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH------IYSIAGLARLGYIKGHKLWA  434 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~------~~A~~~lg~~~~~~G~~~~A  434 (721)
                      ..+.+...++++++..++   ...++..+|.++...|++++|+..++++++.++      ..++..+|.++...|++++|
T Consensus        50 ~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  126 (389)
T PRK11788         50 QPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA  126 (389)
T ss_pred             ChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            445677888887776553   345778899999999999999999999988632      24577889999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          435 YEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRI  505 (721)
Q Consensus       435 ~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~-----~ay~~rg~~l~~lg~~~eAl~~~~kA  505 (721)
                      ...|.++++..|....++..++.    .++.++|++.|+++++.+|+..     ..|.++|.++.+.|++++|+..|+++
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  206 (389)
T PRK11788        127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA  206 (389)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999988877666666543    2555999999999999999864     36788999999999999999999999


Q ss_pred             HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984          506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV  584 (721)
Q Consensus       506 L~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~  584 (721)
                      ++.+|+ ...+..+|.++...|++++|+..|+++++.+|++..     .+...+..+.....++++|             
T Consensus       207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~A-------------  268 (389)
T PRK11788        207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS-----EVLPKLMECYQALGDEAEG-------------  268 (389)
T ss_pred             HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH-----HHHHHHHHHHHHcCCHHHH-------------
Confidence            999997 677788999999999999999999999999998631     1222222233333444444             


Q ss_pred             cccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh--cCCHHHHHHHHH
Q 004984          585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAE  662 (721)
Q Consensus       585 dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~--~G~~deAl~~ye  662 (721)
                           +..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+..  .|+.++|+..++
T Consensus       269 -----~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~  342 (389)
T PRK11788        269 -----LEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR  342 (389)
T ss_pred             -----HHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence                 78999999999987655 8999999999999999999999999999998766555554432  569999999888


Q ss_pred             HHHh
Q 004984          663 ESIQ  666 (721)
Q Consensus       663 ~Ai~  666 (721)
                      +.++
T Consensus       343 ~~~~  346 (389)
T PRK11788        343 DLVG  346 (389)
T ss_pred             HHHH
Confidence            7774

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.86  E-value=1.6e-20  Score=195.17  Aligned_cols=214  Identities=19%  Similarity=0.215  Sum_probs=185.1

Q ss_pred             CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHh
Q 004984          446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLA  524 (721)
Q Consensus       446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~  524 (721)
                      -.+|..+..+|++   .+|+..|..||++||++..+++.||.+|..+|+-..|+.++.++|+++|++..+ .-||.++++
T Consensus        42 lElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   42 LELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            3477888888877   999999999999999999999999999999999999999999999999997655 459999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK  603 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~  603 (721)
                      +|.+++|..||+++|.-+|++-.   ...+...+..++++....+++.       .|..-+|.. ++..+++.|++.||+
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~~~~e~~~l~~ql~-------s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGL---VLEAQSKLALIQEHWVLVQQLK-------SASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcch---hHHHHHHHHhHHHHHHHHHHHH-------HHhcCCchhhHHHHHHHHHhcCcch
Confidence            99999999999999999998621   1223333344444444444442       223335555 778999999999999


Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +.++..|+.++..-|.+..|+.+.+.|-++..|+++.+|..+.++|..|+.+.++..-++-++++|+--
T Consensus       189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            999999999999999999999999999999999999999999999999999999999999999999977

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=5.3e-19  Score=212.09  Aligned_cols=311  Identities=10%  Similarity=-0.035  Sum_probs=212.1

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...+++++...++.   .. ++.+|.++...|++++|+..|++|+++.|  ..++..+|.++...|+.+.|++.+
T Consensus        98 ~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            5667778888877765544   23 77889999999999999999999999854  446677888888888888888777


Q ss_pred             HHHHhcCCCc-------HHHHHHHhhc-------CCh---hHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCC
Q 004984          439 NSVISSVTPL-------GWMYQERSLY-------CEG---DKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQN  494 (721)
Q Consensus       439 ~~aI~~~~~~-------~~ay~~rg~~-------~~~---~eAl~d~~kAieLdP~~~~-------ay~~rg~~l~~lg~  494 (721)
                      +++.. .|+.       +.+...+..+       ++.   ++|++.|+++++..|.++.       ++..+..++...|+
T Consensus       174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~  252 (765)
T PRK10049        174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR  252 (765)
T ss_pred             HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence            76655 4432       1111111000       111   5677777777765433332       22333344566777


Q ss_pred             HHHHHHHHHHHHhcCCC-HHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh----hhhh-HHHHHHHHHHHHhhhh
Q 004984          495 VEAALAEINRILGFKLA-LEC-LELRFCFFLALEDYQAALCDVQAILTLSPDYRM----FEGR-VAASQLHMLVREHIDN  567 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~-~~~-~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~----~~~~-~~a~~~~~~l~~~~~~  567 (721)
                      +++|+..|+++++..|. |.. ....+.++..+|++++|+..|+++++.+|.+..    .... ..+....+....+.+.
T Consensus       253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~  332 (765)
T PRK10049        253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV  332 (765)
T ss_pred             HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            78888888887776542 322 222466777778888888888877777776511    0000 0011111111111111


Q ss_pred             hhH-----------------------HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984          568 WTI-----------------------ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       568 ~~~-----------------------A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA  623 (721)
                      .+.                       .+.+..+...+...++.. |+..++++++..|.++.+++++|.++...|++++|
T Consensus       333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A  412 (765)
T PRK10049        333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA  412 (765)
T ss_pred             HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            111                       111122222333334545 78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 004984          624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL  676 (721)
Q Consensus       624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~  676 (721)
                      +..+++|++++|++.++++.+|.++..+|++++|.+.++++++..|+.. +..+
T Consensus       413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 4443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=1.2e-18  Score=208.97  Aligned_cols=309  Identities=11%  Similarity=-0.003  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      ..++..+|..+...|++++|+..|+++|+..|  ..++.++|.++...|++++|+..+.++++.+|+++. +..+|.   
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            45678899999999999999999999999854  556788999999999999999999999999999988 877764   


Q ss_pred             -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-------------------------------------
Q 004984          458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL-------------------------------------  499 (721)
Q Consensus       458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl-------------------------------------  499 (721)
                       .++.++|+..|++|++++|+++.++..+|.++...|+.++|+                                     
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~  207 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE  207 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence             366799999999999999999999999999998777766544                                     


Q ss_pred             ---------HHHHHHHhc---CCCH--HHH---HHHHHHHHhcCCHHHHHHHHHHHHhhC---CCchhhhhhHHHHHHHH
Q 004984          500 ---------AEINRILGF---KLAL--ECL---ELRFCFFLALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHM  559 (721)
Q Consensus       500 ---------~~~~kAL~l---~P~~--~~~---~~R~~~~~~lgd~eeAl~d~~kal~L~---P~~~~~~~~~~a~~~~~  559 (721)
                               +.++++++.   +|+.  ...   ..+..++...|++++|+..|+++++.+   |++....        .+
T Consensus       208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--------la  279 (765)
T PRK10049        208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--------VA  279 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--------HH
Confidence                     444455543   2321  111   112334578899999999999999986   4442211        11


Q ss_pred             HHHHhhhhhhHHHH-------------------HHhhhhccccccccc-hHHHHHHHHHhCCCC---------------h
Q 004984          560 LVREHIDNWTIADC-------------------WLQLYDRWSSVDDIG-SLSVIYQMLESDAPK---------------G  604 (721)
Q Consensus       560 ~l~~~~~~~~~A~~-------------------~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~---------------~  604 (721)
                      .+.....++++|..                   +..++......++++ |+..++++++.+|..               .
T Consensus       280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~  359 (765)
T PRK10049        280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL  359 (765)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence            12222233333322                   222332333335555 778999999998832               4


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .++..+|.++...|++++|++.++++++..|++++++..+|.++...|++++|++.+++|++++|+.. .++.+|++..+
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999976 88888887665


Q ss_pred             cCCCCCchhhHHHHHHHhhcC
Q 004984          684 SSQDSSCSSTVVSLLEDALKC  704 (721)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~  704 (721)
                      ..    --.....+++++++-
T Consensus       440 ~~----~~~~A~~~~~~ll~~  456 (765)
T PRK10049        440 LQ----EWRQMDVLTDDVVAR  456 (765)
T ss_pred             hC----CHHHHHHHHHHHHHh
Confidence            54    244455555555543

>PLN02789 farnesyltranstransferase

Probab=99.84  E-value=4e-19  Score=191.58  Aligned_cols=218  Identities=14%  Similarity=0.064  Sum_probs=170.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 004984          429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILG  507 (721)
Q Consensus       429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~kAL~  507 (721)
                      +++.+|...+..++...             ++.++|+..+++||+++|++..+|.+||.++..+| ++++|+..++++|+
T Consensus        34 ~~~~~a~~~~ra~l~~~-------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~  100 (320)
T PLN02789         34 PEFREAMDYFRAVYASD-------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE  100 (320)
T ss_pred             HHHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence            45566666666555443             34488888889999999999999999999999998 57899999999999


Q ss_pred             cCCC-HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984          508 FKLA-LECLELRFCFFLALEDY--QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV  584 (721)
Q Consensus       508 l~P~-~~~~~~R~~~~~~lgd~--eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~  584 (721)
                      .+|+ ...|+.|++++..+|+.  ++++..+++++++||+|..      +...++-+......|+++             
T Consensus       101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~ee-------------  161 (320)
T PLN02789        101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDE-------------  161 (320)
T ss_pred             HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHH-------------
Confidence            9996 78888899888888874  7788888899999998843      444444444444556655             


Q ss_pred             cccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCC
Q 004984          585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSH  653 (721)
Q Consensus       585 dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~  653 (721)
                           +..++++|+.||++..+|++||.++..+   |..    ++++....+++.++|+|..+++++|+++..    +++
T Consensus       162 -----L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~  236 (320)
T PLN02789        162 -----LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS  236 (320)
T ss_pred             -----HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence                 8889999999999999999999998887   333    478888889999999999999999999988    567


Q ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      ..+|+...++++..+|+.. |--..+-.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             chhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            7889999999999887655 43333444444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.2e-18  Score=190.92  Aligned_cols=294  Identities=13%  Similarity=0.076  Sum_probs=181.9

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG  461 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~  461 (721)
                      ..|+..+..|+|+.|+.+|..||.+.|...  |.++..+|..+|++.+|+.+-.+.++++|.++..|...|.    .|++
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence            467888888999999999999999865543  4567778899999999999999999999999999988874    4677


Q ss_pred             hHHHHHHHHHHhcCCCChHHHH----------------------------------------------------------
Q 004984          462 DKRWEDLDKATALDPTLSYPYM----------------------------------------------------------  483 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~----------------------------------------------------------  483 (721)
                      ++|+..|.+.++.+|++...+.                                                          
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            9999999999999998754444                                                          


Q ss_pred             --------------------------------------------------------------HHHHHHHhcCCHHHHHHH
Q 004984          484 --------------------------------------------------------------YRASSLMTKQNVEAALAE  501 (721)
Q Consensus       484 --------------------------------------------------------------~rg~~l~~lg~~~eAl~~  501 (721)
                                                                                    .+|++.....++..|+..
T Consensus       167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~  246 (539)
T KOG0548|consen  167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH  246 (539)
T ss_pred             ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence                                                                          445555555556666666


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-------hhhhHH-HHHHHHHHHHhhhhhhHHHH
Q 004984          502 INRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-------FEGRVA-ASQLHMLVREHIDNWTIADC  573 (721)
Q Consensus       502 ~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-------~~~~~~-a~~~~~~l~~~~~~~~~A~~  573 (721)
                      |.++|+++-+...+.+++.+|.++|.+++.+.++.++++..-....       ..+|++ +....+.....+..+.++..
T Consensus       247 y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt  326 (539)
T KOG0548|consen  247 YAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT  326 (539)
T ss_pred             HHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence            7777766622444555666666666666666666666554332211       111111 22222222223333332211


Q ss_pred             HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      --..-+.+++....+ ++...++...++|..+.--..+|+..++.|++.+|+..|.+|+..+|+|+-.|-||+.|+..+|
T Consensus       327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG  406 (539)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence            111111122222222 2333444444555555556666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCHH-HHHHHHHHh
Q 004984          653 HCEEGLRKAEESIQMKRSFE-AFFLKAYAL  681 (721)
Q Consensus       653 ~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~  681 (721)
                      ++.+|+++.+++|+++|+|. +|+-||-+|
T Consensus       407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  407 EYPEALKDAKKCIELDPNFIKAYLRKGAAL  436 (539)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            66666666666666666666 666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=2e-18  Score=200.05  Aligned_cols=222  Identities=11%  Similarity=-0.083  Sum_probs=178.7

Q ss_pred             hhHHHHHHH---hCCHHHHHHHHHHHHhcCCCcHHHHHHHhh-------cC------ChhHHHHHHHHHHhcCCCChHHH
Q 004984          419 AGLARLGYI---KGHKLWAYEKLNSVISSVTPLGWMYQERSL-------YC------EGDKRWEDLDKATALDPTLSYPY  482 (721)
Q Consensus       419 ~~lg~~~~~---~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~-------~~------~~~eAl~d~~kAieLdP~~~~ay  482 (721)
                      +..|+.+..   .++.++|+..|.+|++++|+++.+|...+.       .+      +.++|+..+++|++++|+++.+|
T Consensus       262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~  341 (553)
T PRK12370        262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL  341 (553)
T ss_pred             HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH
Confidence            344553433   345679999999999999999888766653       11      24899999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 004984          483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV  561 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l  561 (721)
                      ..+|.++..+|++++|+..|++|++++|+ +..++.+|.++..+|++++|+..|+++++++|++..+.      .....+
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~------~~~~~~  415 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG------ITKLWI  415 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH------HHHHHH
Confidence            99999999999999999999999999997 77888899999999999999999999999999984321      111111


Q ss_pred             HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984          562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                      .....++++|                  +..++++++.. |+++.++.++|.++..+|++++|.+.+++++...|++..+
T Consensus       416 ~~~~g~~eeA------------------~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~  477 (553)
T PRK12370        416 TYYHTGIDDA------------------IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA  477 (553)
T ss_pred             HHhccCHHHH------------------HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence            2222334444                  77889999875 8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          641 LVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      ...++.++..+|+  +|.+.+++.++
T Consensus       478 ~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        478 VNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHhccHH--HHHHHHHHHHH
Confidence            9999998888884  55555555444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=9.3e-19  Score=195.79  Aligned_cols=205  Identities=13%  Similarity=0.056  Sum_probs=184.7

Q ss_pred             cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984          413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASS  488 (721)
Q Consensus       413 ~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~  488 (721)
                      +.+.+|--+|+++..+++++.|++.|.+||.++|+++.+|--+|.    ...+|.|...|++||..||.+..||+.+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            456688899999999999999999999999999999999998874    2345999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984          489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN  567 (721)
Q Consensus       489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~  567 (721)
                      |+.+++++.|.-.|+||+++||. .......|.++.++|+.++|++-|++|+.+||.+.      .....++.+.-...+
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLGR  572 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhcc
Confidence            99999999999999999999996 56667789999999999999999999999999994      355555556666666


Q ss_pred             hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                      +++|                  +..+++.-++-|..+..++..|.++-++|...-|+--|--|++++|.-+++.
T Consensus       573 ~~ea------------------l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~  628 (638)
T KOG1126|consen  573 YVEA------------------LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ  628 (638)
T ss_pred             hHHH------------------HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence            6666                  8899999999999999999999999999999999999999999999977643

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=5e-18  Score=196.67  Aligned_cols=254  Identities=11%  Similarity=-0.049  Sum_probs=155.4

Q ss_pred             HHHHHHHHHh---ccchHHHHHHHHHHHhccchh--hHhhHHHHHHHh---------CCHHHHHHHHHHHHhcCCCcHHH
Q 004984          386 FHQLGCVRLL---RKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIK---------GHKLWAYEKLNSVISSVTPLGWM  451 (721)
Q Consensus       386 ~~~lG~~~~~---~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~---------G~~~~A~~~~~~aI~~~~~~~~a  451 (721)
                      ++.+|.....   .+.+++|+..|++|++++|.+  ++.++|.++..+         |++++|...+.+|++++|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            3455544332   245677777777777775433  455566555433         23667777777777777777777


Q ss_pred             HHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          452 YQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       452 y~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      |..+|.    .++.++|+..|++|++++|+++.+|+++|.++...|++++|+..+++|++++|. +..++.++.++...|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            766654    245577777777777777777777777777777777777777777777777775 344445555566677


Q ss_pred             CHHHHHHHHHHHHhhC-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          527 DYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       527 d~eeAl~d~~kal~L~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                      ++++|+..++++++.+ |++.      .+...++.+.....+.++|                  ...+.+.+...|.+..
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~------~~~~~la~~l~~~G~~~eA------------------~~~~~~~~~~~~~~~~  476 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNP------ILLSMQVMFLSLKGKHELA------------------RKLTKEISTQEITGLI  476 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCH------HHHHHHHHHHHhCCCHHHH------------------HHHHHHhhhccchhHH
Confidence            7777777777777664 4542      2344444444445555555                  5556777777777777


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      ++...+..+..+|.  +|.+.+++.++..-....-......++--.|+-+.+... +++++
T Consensus       477 ~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        477 AVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             HHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence            77777777776663  455555554443322222222244455555666655544 55444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=4.1e-17  Score=170.11  Aligned_cols=277  Identities=11%  Similarity=0.086  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      .+++|.+|.+|+..|+-.-|+.++.+.|++.|  .-|-..+|.++.++|.+++|..+|+..|.-.|+.+.....+.+   
T Consensus        72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~  151 (504)
T KOG0624|consen   72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL  151 (504)
T ss_pred             HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence            46778888888888888888888888888854  3355667888888888888888888888888865443322211   


Q ss_pred             ----------------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 004984          458 ----------------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC  520 (721)
Q Consensus       458 ----------------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~  520 (721)
                                      -|+...|++..++.|++.|=++..|..|+.+|...|....||.+.+.|-++..+ .+.++.-..
T Consensus       152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~  231 (504)
T KOG0624|consen  152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ  231 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence                            145578888888888888888889999999999999999999999999888775 677777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984          521 FFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES  599 (721)
Q Consensus       521 ~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l  599 (721)
                      ++...||.+.++...+..+++||++.- |-...........+..+.+-.++-+ |+            ..++-.+..+..
T Consensus       232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~t------------~cle~ge~vlk~  298 (504)
T KOG0624|consen  232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-WT------------ECLEAGEKVLKN  298 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HH------------HHHHHHHHHHhc
Confidence            888999999999999999999998732 1111222222222222222111110 11            126678888999


Q ss_pred             CCCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          600 DAPKGVLYFR----QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       600 ~P~~~~~~~~----~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|.-+...+|    .-.|...-+.+.||++-...+++.+|+|++++--++.++.-.-.||.|+..|++|.+.++|..
T Consensus       299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            9986665544    334555578899999999999999999999999999999999999999999999999999875

>PLN02789 farnesyltranstransferase

Probab=99.78  E-value=3e-17  Score=177.09  Aligned_cols=222  Identities=12%  Similarity=-0.012  Sum_probs=168.0

Q ss_pred             cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----C-ChhHHHHHHHHH
Q 004984          397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C-EGDKRWEDLDKA  471 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~-~~~eAl~d~~kA  471 (721)
                      ++|.+|..+|++++.               ..++..+|+..++++|+++|++..+|..||.+    + ..++++..++++
T Consensus        34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~   98 (320)
T PLN02789         34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV   98 (320)
T ss_pred             HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            356666666555433               34566777777778888888777777777642    2 347889999999


Q ss_pred             HhcCCCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984          472 TALDPTLSYPYMYRASSLMTKQNV--EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       472 ieLdP~~~~ay~~rg~~l~~lg~~--~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~  548 (721)
                      ++.+|++..+|.+||.++..+|+.  +++++.++++|+++|. ..+|..|++++..+|++++|+..++++|++||+|.. 
T Consensus        99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-  177 (320)
T PLN02789         99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-  177 (320)
T ss_pred             HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-
Confidence            999999999999999999888874  7788899999999995 788889999999999999999999999999998833 


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAM  624 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl  624 (721)
                           +.+.++.+.........-          .. ..-+.+..+.++|.++|.+..+|++++-++..    +++..+|+
T Consensus       178 -----AW~~R~~vl~~~~~l~~~----------~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        178 -----AWNQRYFVITRSPLLGGL----------EA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             -----HHHHHHHHHHhccccccc----------cc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence                 222222221111000000          00 00013678889999999999999999999998    56678899


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984          625 RSLQLARQHAASDHERLVYEGWILYD  650 (721)
Q Consensus       625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~  650 (721)
                      +.+.+++..+|+++.|+-.+.-++..
T Consensus       242 ~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        242 SVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            99999999999999999999998875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.77  E-value=3.2e-18  Score=181.07  Aligned_cols=255  Identities=16%  Similarity=0.111  Sum_probs=106.8

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---CC
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CE  460 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~----~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---~~  460 (721)
                      .++.++...|++++|.+.+.+++..    +....+..+|.+...+|+++.|+..|.+.+...+.....+.+...+   ++
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~   92 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5688899999999999999765433    2344566788889999999999999999999988877666666544   45


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P-~~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      .++|+..+.++.+-++ ++..+.....++...|+++++...++++.+..  | ++..+..+|.++.+.|+.++|+++|++
T Consensus        93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5999998888888665 46777888889999999999999999988765  3 466778899999999999999999999


Q ss_pred             HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984          538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL  617 (721)
Q Consensus       538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l  617 (721)
                      |++++|++..      +.....-+.-..++.+++                  ...+.+.....|.++.+|...|.++..+
T Consensus       172 al~~~P~~~~------~~~~l~~~li~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  172 ALELDPDDPD------ARNALAWLLIDMGDYDEA------------------REALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHH-TT-HH------HHHHHHHHHCTTCHHHHH------------------HHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHcCCCCHH------HHHHHHHHHHHCCChHHH------------------HHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            9999999843      222222122222233332                  4466666777799999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      |++++|+..++++++.+|+|+..+.+.|.+|...|+.++|++.+++++..
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.77  E-value=7e-16  Score=178.10  Aligned_cols=307  Identities=15%  Similarity=0.099  Sum_probs=238.6

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      .+.+..|-+++.......-..+..+|++|.++..+|+|++|..+|.+|++.+   +..+++|+|-+|..+|++..|..+|
T Consensus       286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f  365 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF  365 (1018)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence            4456677788776665555567789999999999999999999999999983   3668899999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhhcC--------ChhHHHHHHHHHHhcCCCChHHH----------------------------
Q 004984          439 NSVISSVTPLGWMYQERSLYC--------EGDKRWEDLDKATALDPTLSYPY----------------------------  482 (721)
Q Consensus       439 ~~aI~~~~~~~~ay~~rg~~~--------~~~eAl~d~~kAieLdP~~~~ay----------------------------  482 (721)
                      .+....+|++-....-.|.+.        ..++|.....++++..|.++.+|                            
T Consensus       366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~  445 (1018)
T KOG2002|consen  366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES  445 (1018)
T ss_pred             HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            999999998555444444321        22677777777777777775444                            


Q ss_pred             ----------HHHHHHHHhcCCHHHHHHHHHHHHhc-CC--CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          483 ----------MYRASSLMTKQNVEAALAEINRILGF-KL--ALE--------CLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       483 ----------~~rg~~l~~lg~~~eAl~~~~kAL~l-~P--~~~--------~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                                +|.|..++.+|++.+|...|.+|++. .|  +.+        .-||++.++..+++++.|...|..+++.
T Consensus       446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence                      56677778888999999999999886 22  222        3588999999999999999999999999


Q ss_pred             CCCchhhhhhHH----------------------------HHHHHHHHHHhhhhhhHHH-----------------HHHh
Q 004984          542 SPDYRMFEGRVA----------------------------ASQLHMLVREHIDNWTIAD-----------------CWLQ  576 (721)
Q Consensus       542 ~P~~~~~~~~~~----------------------------a~~~~~~l~~~~~~~~~A~-----------------~~~~  576 (721)
                      .|+|+..+.|.+                            +..+.|.+-.....|-.|.                 ..++
T Consensus       526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence            999988765553                            3344443333333332221                 1222


Q ss_pred             hhh-------cccccc-----ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984          577 LYD-------RWSSVD-----DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY  643 (721)
Q Consensus       577 l~~-------~~~~~d-----d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~  643 (721)
                      ++.       .|++.+     -+. |++.|.++|..+|.|..+=+..|.+|..-|++.+|...|.+..+--.++.+++.|
T Consensus       606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN  685 (1018)
T KOG2002|consen  606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN  685 (1018)
T ss_pred             hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence            222       222222     122 7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          644 EGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       644 ~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      +|.|+..+|+|-.|++.|+..++.-
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998863

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.77  E-value=2.7e-18  Score=185.47  Aligned_cols=177  Identities=20%  Similarity=0.300  Sum_probs=153.8

Q ss_pred             cccCCCCCccEEEEEcC-----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC
Q 004984          174 SMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN  248 (721)
Q Consensus       174 ~~~~~~~~~DV~l~v~~-----~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~  248 (721)
                      .+.+++..+||.|+||+     ..|||||.|||..|..|.+||+|++.|+...+|.++|  +.|.+|..+|+|+|++.+.
T Consensus       107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYsdev~  184 (521)
T KOG2075|consen  107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYSDEVK  184 (521)
T ss_pred             hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhcchhh
Confidence            46678889999999974     5899999999999999999999999999889999996  9999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChH------
Q 004984          249 GVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDE------  322 (721)
Q Consensus       249 ~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~------  322 (721)
                       +..+++..+|.+|++|.++.|.+.|.+||...+.+...++.+-+-|..++-++|+..|++++..++.+.|..|      
T Consensus       185 -~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did  263 (521)
T KOG2075|consen  185 -LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID  263 (521)
T ss_pred             -hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence             9999999999999999999999999999999998656666666669999999999999999999988877544      


Q ss_pred             ----HHHHHhccccccchhhhcccchhhHHHHHHHhhhcCC
Q 004984          323 ----RVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD  359 (721)
Q Consensus       323 ----~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~  359 (721)
                          .+.+++.++.++     +. +...++++++|+.....
T Consensus       264 ~~~dt~~evl~r~~l~-----~~-e~~lfeA~lkw~~~e~~  298 (521)
T KOG2075|consen  264 STRDTYEEVLRRDTLE-----AR-EFRLFEAALKWAEAECQ  298 (521)
T ss_pred             hHHHHHHHHHhhcccc-----hh-HHHHHHHHHhhccCcch
Confidence                445555555543     22 66789999999987654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=5.1e-16  Score=170.97  Aligned_cols=271  Identities=14%  Similarity=0.039  Sum_probs=226.2

Q ss_pred             HHHHHhccchHHHHHHHHHHHhccchhh---HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChh
Q 004984          390 GCVRLLRKEYDEAEHLFEAAVNAGHIYS---IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGD  462 (721)
Q Consensus       390 G~~~~~~g~y~eA~~~f~~AL~~~~~~A---~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~  462 (721)
                      +......++|.+-.+.++..++.+|...   -..+| .++.+|+...=+..-.+.+..+|+.+..|+.-|.|    +.+.
T Consensus       251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence            3344567789999999999999854332   34456 78899999888888889999999988888888764    5669


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      +|...|.||+.+||++..+|...|.++.-.|..++|++.|.+|-++=|. .--....|.=|..++.++-|..-|..|..+
T Consensus       330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai  409 (611)
T KOG1173|consen  330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI  409 (611)
T ss_pred             HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999885 222345788899999999999999999999


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH----HhCCCC---hhHHHHHHHHH
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML----ESDAPK---GVLYFRQSLLL  614 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL----~l~P~~---~~~~~~~g~~L  614 (721)
                      .|+++      -..+..+-+.-.-+.|.+|.                  ..+..++    +..+..   ...+.|+|.++
T Consensus       410 ~P~Dp------lv~~Elgvvay~~~~y~~A~------------------~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  410 APSDP------LVLHELGVVAYTYEEYPEAL------------------KYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             CCCcc------hhhhhhhheeehHhhhHHHH------------------HHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            99994      35666666666666777774                  3333343    223332   34589999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~  685 (721)
                      .++|++++|+..|++||.+.|.+++.|-..|.++..+|++|.|+..|.+|+.|+|+.. +==+.+.++.|+.
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~  537 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE  537 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999997 6667778999843

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=3.6e-16  Score=156.02  Aligned_cols=186  Identities=16%  Similarity=0.063  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++++.|+ ...+.+.+.++..+|++++|+..|+++++
T Consensus        48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  127 (234)
T TIGR02521        48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE  127 (234)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            44455555555556666666666666666666666666666666666664 44455556666666666666666666665


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      ..+...    ........+.+.....++++|                  ...+++++..+|.++.++..+|.++..+|++
T Consensus       128 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       128 DPLYPQ----PARSLENAGLCALKAGDFDKA------------------EKYLTRALQIDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             cccccc----chHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence            432110    011112222222222222222                  5556666666666677788899999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ++|+..+++++++.|++++.+...+.++...|+.++|....++...+.|
T Consensus       186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999999999999999999988887766644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.2e-17  Score=173.13  Aligned_cols=281  Identities=16%  Similarity=0.088  Sum_probs=218.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984          377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE  454 (721)
Q Consensus       377 ~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~  454 (721)
                      ....+.+.-....|......+.|.+|+..|..||+..|..  .|.+++.++.+.|+++.|.-+.++.+++.|...+.+.+
T Consensus        43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r  122 (486)
T KOG0550|consen   43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR  122 (486)
T ss_pred             chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence            3333444555678999999999999999999999995544  46678999999999999999999999999987777666


Q ss_pred             HhhcCCh----hHHH---HH---------HHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 004984          455 RSLYCEG----DKRW---ED---------LDKATALD------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-  511 (721)
Q Consensus       455 rg~~~~~----~eAl---~d---------~~kAieLd------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-  511 (721)
                      -++....    .+|-   .+         +...-.+-      |....+-.--+.+++.+|++++|+..--.++++++. 
T Consensus       123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n  202 (486)
T KOG0550|consen  123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN  202 (486)
T ss_pred             hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence            6554111    1111   11         11111222      333344555788999999999999999999999995 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL  590 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al  590 (721)
                      .+.++.||.++.-.++.+.|+..|++++.++|+....   ..+......+..-..+-+++          -.-+.+. |-
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~----------fk~G~y~~A~  269 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDA----------FKNGNYRKAY  269 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhH----------hhccchhHHH
Confidence            8889999999999999999999999999999998432   11222222222222222222          2224455 67


Q ss_pred             HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      .+|..||.+||.+.    .+|.||+.+..++||..||+.+.+.|+.++|..-.|+..+|.|...++.+++|+++|++|+.
T Consensus       270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999875    56999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCC
Q 004984          667 MKRS  670 (721)
Q Consensus       667 i~~~  670 (721)
                      ..-+
T Consensus       350 ~~~s  353 (486)
T KOG0550|consen  350 LEKD  353 (486)
T ss_pred             hccc
Confidence            8766

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=6.3e-15  Score=164.75  Aligned_cols=284  Identities=12%  Similarity=0.051  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-HHHHHhh-
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQERSL-  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~-ay~~rg~-  457 (721)
                      +.......|......|+++.|.+...++.+..+.  -++...|.+...+|+++.|...+.++.+..|+... +...++. 
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            3445567899999999999999999999888443  34455688999999999999999999998887642 2222222 


Q ss_pred             ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH---HHhcCCHH
Q 004984          458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF---FLALEDYQ  529 (721)
Q Consensus       458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~-~~R~~~---~~~lgd~e  529 (721)
                         .++.++|+..+++.++.+|+++.++.-.|.++.++|++++|+..+.+.++.++ ++..+ ..+..+   +...++.+
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence               24559999999999999999999999999999999999999999999998754 33322 222222   24556667


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH--
Q 004984          530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY--  607 (721)
Q Consensus       530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~--  607 (721)
                      +++..+.++.+..|...  .....+......+....++.++|                  ...+++++...|.+....  
T Consensus       243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~A------------------~~~l~~~l~~~pd~~~~~~~  302 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDSA------------------QEIIFDGLKKLGDDRAISLP  302 (409)
T ss_pred             cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHHH------------------HHHHHHHHhhCCCcccchhH
Confidence            77778899999888420  00122333333334444444444                  889999999999998642  


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCHHHHHHHHHHhhc
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCEEGLRKAE--ESIQMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--ea~~~~G~~Ly~~G~~deAl~~ye--~Ai~i~~~~~a~~~~~~~~~~  683 (721)
                      .-+.......++.++++..++++++..|+++  ..+..+||+++.+|++++|...+|  ++++++|+.+.+..-|-++..
T Consensus       303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~  382 (409)
T TIGR00540       303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ  382 (409)
T ss_pred             HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            3344444556888999999999999999999  889999999999999999999999  688899999987777777665


Q ss_pred             cC
Q 004984          684 SS  685 (721)
Q Consensus       684 ~~  685 (721)
                      .+
T Consensus       383 ~g  384 (409)
T TIGR00540       383 AG  384 (409)
T ss_pred             cC
Confidence            54

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.70  E-value=4.5e-15  Score=148.04  Aligned_cols=199  Identities=14%  Similarity=0.012  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      ...++++|..+...|++++|+..|+++++.++  ..++..+|.++..+|++++|                          
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A--------------------------   84 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKA--------------------------   84 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH--------------------------
Confidence            45667777777777777777777777777643  33455566666666655555                          


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                          +..|+++++++|++..++.++|.++...|++++|+..|++++...+  . ...+..+|.++...|++++|+..|++
T Consensus        85 ----~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (234)
T TIGR02521        85 ----EDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR  160 (234)
T ss_pred             ----HHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                4455566666666666777777777777777777777777776432  2 34455666777777777777777777


Q ss_pred             HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984          538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL  617 (721)
Q Consensus       538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l  617 (721)
                      +++.+|++..      +...++.+.....++++|                  +..+++++...|.++..+...+.++...
T Consensus       161 ~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (234)
T TIGR02521       161 ALQIDPQRPE------SLLELAELYYLRGQYKDA------------------RAYLERYQQTYNQTAESLWLGIRIARAL  216 (234)
T ss_pred             HHHhCcCChH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            7777776522      222333333334444444                  5566777777777777777788888888


Q ss_pred             CChHHHHHHHHHHHHhCC
Q 004984          618 NCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P  635 (721)
                      |+.++|.+..+.+.+..|
T Consensus       217 ~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       217 GDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             hhHHHHHHHHHHHHhhCc
Confidence            999988888887776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.1e-15  Score=161.49  Aligned_cols=250  Identities=15%  Similarity=0.086  Sum_probs=194.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHHHHh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQERS  456 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------~~~ay~~rg  456 (721)
                      .-++.++....+.++|++.+++-+..+   ..+.....|.+.+.+.|+++|+..|+...+.+|-       ..++++-+.
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~  310 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence            456667777778888888888877774   4445566788899999999999999988887773       223333332


Q ss_pred             hcCChhHHHHHH-HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          457 LYCEGDKRWEDL-DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       457 ~~~~~~eAl~d~-~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                      .    ..++..+ ..+..+|.--++.-.-.|+-|...++++.|+..|+||+++||. ..+|.+-|-=|.++++-..|+..
T Consensus       311 ~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  311 D----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             h----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence            1    1233322 3466667766777777888888888888888888888888887 56677777778888888888888


Q ss_pred             HHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984          535 VQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL  612 (721)
Q Consensus       535 ~~kal~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~  612 (721)
                      |++|++++|.+ .+++|-+.++...+                          =.. ||-.|.+|+++-|+++..|.-+|.
T Consensus       387 YRrAvdi~p~DyRAWYGLGQaYeim~--------------------------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~  440 (559)
T KOG1155|consen  387 YRRAVDINPRDYRAWYGLGQAYEIMK--------------------------MHFYALYYFQKALELKPNDSRLWVALGE  440 (559)
T ss_pred             HHHHHhcCchhHHHHhhhhHHHHHhc--------------------------chHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            88888888865 44554444433322                          112 467889999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      ++.++|+.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||.+.|++=+.
T Consensus       441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.70  E-value=3.1e-17  Score=148.75  Aligned_cols=102  Identities=25%  Similarity=0.451  Sum_probs=91.6

Q ss_pred             CCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCC-CCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC-HH
Q 004984          177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN  253 (721)
Q Consensus       177 ~~~~~~DV~l~v~-~~~~~aHr~vLAa~S~yF~amF~~~-~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~-~~  253 (721)
                      +++.+||++|.++ +++|+|||.||+++|+||+.||.++ +.++...+|.+++  +++++|..+++|+|+|.+. ++ .+
T Consensus         6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~~-~~~~~   82 (111)
T PF00651_consen    6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEIE-INSDE   82 (111)
T ss_dssp             HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred             cCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCccc-CCHHH
Confidence            4567899999999 8999999999999999999999998 6777777888884  9999999999999999998 87 99


Q ss_pred             HHHHHHHHhhhcChhhHHHHHHHHHHhh
Q 004984          254 LLLEILIFANKFCCERLKDACDRKLASL  281 (721)
Q Consensus       254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~~  281 (721)
                      ++.+++.+|++|+++.|++.|.++|.+.
T Consensus        83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   83 NVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            9999999999999999999999999764

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.69  E-value=9.8e-15  Score=168.78  Aligned_cols=312  Identities=13%  Similarity=0.046  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY  458 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~  458 (721)
                      +..++...+++.+.+|+|..|+.+|.+||.++   .++.-.++|.+..++|+.+.|+..+.+|++++|....++..+|.+
T Consensus       163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~  242 (1018)
T KOG2002|consen  163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV  242 (1018)
T ss_pred             chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence            45777888888999999999999999999985   455667888899999999999999999999999999998888754


Q ss_pred             C-------ChhHHHHHHHHHHhcCCCChH-------------------------------------HHHHHHHHHHhcCC
Q 004984          459 C-------EGDKRWEDLDKATALDPTLSY-------------------------------------PYMYRASSLMTKQN  494 (721)
Q Consensus       459 ~-------~~~eAl~d~~kAieLdP~~~~-------------------------------------ay~~rg~~l~~lg~  494 (721)
                      .       -+..++..+.+|-..+|.+|.                                     .++.+|-+++.+|+
T Consensus       243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            1       227888899999999999954                                     45556666666666


Q ss_pred             HHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-------
Q 004984          495 VEAALAEINRILGFKLALE--CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------  565 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~~~--~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~-------  565 (721)
                      |++|...|-.+++.+|+..  .++-.|..++..|++++|+.+|+++++..|++..      +...+|.+-...       
T Consensus       323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------tm~iLG~Lya~~~~~~~~~  396 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------TMKILGCLYAHSAKKQEKR  396 (1018)
T ss_pred             HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------HHHHHHhHHHhhhhhhHHH
Confidence            6666666666666666531  1233455666666666666666666666666532      222222222221       


Q ss_pred             ------------hhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984          566 ------------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQ  628 (721)
Q Consensus       566 ------------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~  628 (721)
                                  .....+++|+.+..-|-.-|-..++..|..|+.+     .|--++..+|.|.....+|.++.|...+.
T Consensus       397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~  476 (1018)
T KOG2002|consen  397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK  476 (1018)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence                        2245566777777777777766688888888832     34567888999999999999999999999


Q ss_pred             HHHHh-----CCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHH
Q 004984          629 LARQH-----AASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSL  697 (721)
Q Consensus       629 ~Al~l-----~P~~~-----ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~  697 (721)
                      +|+..     +++.+     -..||+|.++-.++++++|-..|...++..|+|. +|.-.|--.-|++-+++.|.-+-..
T Consensus       477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~  556 (1018)
T KOG2002|consen  477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDA  556 (1018)
T ss_pred             HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence            99988     33332     2489999999999999999999999999999999 7777774445888888887655444


Q ss_pred             HH
Q 004984          698 LE  699 (721)
Q Consensus       698 ~~  699 (721)
                      |+
T Consensus       557 l~  558 (1018)
T KOG2002|consen  557 LN  558 (1018)
T ss_pred             Hh
Confidence            43

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=2.2e-16  Score=167.13  Aligned_cols=243  Identities=19%  Similarity=0.107  Sum_probs=112.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ  493 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg  493 (721)
                      .+|.++++.|++++|++.+.+.+...  |++...|..++.+    ++.++|+..|++.++.+|..+..+.+++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            56899999999999999997766554  5666666656543    456999999999999999999999999988 7999


Q ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      ++++|+..+.++.+..+++..+.....++...|+++++...++++....  |++      .......+.+.....++++|
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDKA  165 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999887777777666778999999999999999988755  333      23444455555555666666


Q ss_pred             HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984          572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~  651 (721)
                                        +.+++++|+++|+++.++...+.++...|+.++|.+.++...+..|+++..+..+|+++..+
T Consensus       166 ------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  166 ------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             ------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence                              88999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 004984          652 SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD  687 (721)
Q Consensus       652 G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~  687 (721)
                      |++++|+..|+++++.+|+.. ....-|.+|.-++--
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999655 777888888766543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=7.8e-16  Score=170.27  Aligned_cols=250  Identities=15%  Similarity=0.044  Sum_probs=161.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      -|..+.+.|+.-+|.-.|+.||..+|..+.+|..+|..    ..-..|+..+.++++|||++..+.+.+|..|...|.-.
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence            45556666666666666666666666666666666542    22255566666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984          497 AALAEINRILGFKLALECLELRFC----------FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID  566 (721)
Q Consensus       497 eAl~~~~kAL~l~P~~~~~~~R~~----------~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~  566 (721)
                      +|+..+.+=|.-+|....  ++..          -+...-.+..-.+.|-.|...+|.-                     
T Consensus       371 ~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~---------------------  427 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK---------------------  427 (579)
T ss_pred             HHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---------------------
Confidence            666666666655553221  1100          0000111122222233333333321                     


Q ss_pred             hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG  645 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G  645 (721)
                        ..+|...-|+.-..-.++|. |+.+|+.||..+|++..+|+++|-+|..-++.+||+..|++|++|.|....+.||+|
T Consensus       428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG  505 (579)
T ss_pred             --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence              11222222222222223333 588999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCC
Q 004984          646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP  705 (721)
Q Consensus       646 ~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (721)
                      .....+|.|.||+..|=.||.|++..-       .-.|.   |..|.++++-|.-||.|-
T Consensus       506 IS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~~~~---~~~se~iw~tLR~als~~  555 (579)
T KOG1125|consen  506 ISCMNLGAYKEAVKHLLEALSMQRKSR-------NHNKA---PMASENIWQTLRLALSAM  555 (579)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhccc-------ccccC---CcchHHHHHHHHHHHHHc
Confidence            999999999999999999999998621       11221   233778888888777763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.68  E-value=1.3e-14  Score=166.89  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---  458 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---  458 (721)
                      ......++..+.+|++++|+..+..+|+++  +..||+.+|.+|.++|+..+++...-.|.-++|.+...|...+.+   
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            344456667778899999999999999995  455789999999999999999999988999999887777766543   


Q ss_pred             -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HH--HH--HHHHHhcCCHHHH
Q 004984          459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LE--LR--FCFFLALEDYQAA  531 (721)
Q Consensus       459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~--~~--~R--~~~~~~lgd~eeA  531 (721)
                       +-.+.|.-+|+|||.++|.+...+.+|+.+|.++|++..|+..|.+++.+.|..+.  ..  .+  +-.+...++-+.|
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence             34499999999999999999999999999999999999999999999999994221  11  12  2346666666777


Q ss_pred             HHHHHHHHhhCC------C--------------------------------chhh----------------------hhh
Q 004984          532 LCDVQAILTLSP------D--------------------------------YRMF----------------------EGR  551 (721)
Q Consensus       532 l~d~~kal~L~P------~--------------------------------~~~~----------------------~~~  551 (721)
                      +..++.++...-      +                                ...+                      ..+
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            777776666111      1                                0000                      000


Q ss_pred             H----------HHHHHHHHHHHhhhhh-----hHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 004984          552 V----------AASQLHMLVREHIDNW-----TIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-GVLYFRQSLLL  614 (721)
Q Consensus       552 ~----------~a~~~~~~l~~~~~~~-----~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~-~~~~~~~g~~L  614 (721)
                      +          ....+.+.+.+.+...     +..+.++++.+.+.+.+.+. |+..+.+.+...++. +..|.++|.++
T Consensus       380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence            0          0122222222222222     24455566666666677777 788888888887754 56899999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ..+|.+++|+..|.+++.++|++.++...++.+++.+|+.|+|+...++-+
T Consensus       460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999998866

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.68  E-value=8.5e-17  Score=155.99  Aligned_cols=171  Identities=16%  Similarity=0.289  Sum_probs=136.5

Q ss_pred             ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC
Q 004984          175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT  251 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~---~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~  251 (721)
                      +.+.+.|+|++|.++   ++.|+|||.|||++|++++  |.++-.|.. .+..+.  ++++++|...++||||+.++ +.
T Consensus        60 L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk  133 (280)
T KOG4591|consen   60 LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FK  133 (280)
T ss_pred             HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cc
Confidence            347888999999998   5789999999999999886  444433332 344455  59999999999999999998 76


Q ss_pred             HH--HHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc-------CCChH
Q 004984          252 PN--LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDE  322 (721)
Q Consensus       252 ~~--~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~~~  322 (721)
                      .+  -+.+++..|++|+++.|+..|++-+.+.++ ++||+.++++|++.++.+|...|-++|..+.++       +++..
T Consensus       134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~a  212 (280)
T KOG4591|consen  134 EDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAA  212 (280)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHH
Confidence            54  578999999999999999999999999995 999999999999999999999999999988776       44555


Q ss_pred             HHHHHhccccccch--hhhcccchhhHHHHHH
Q 004984          323 RVVEIFSHANRQHR--SIMVGLASFSLYCLLS  352 (721)
Q Consensus       323 ~v~~ll~~~~~~~r--~~~v~~~~~~~~~~l~  352 (721)
                      -+-+++.+...+-.  ...++.+..++.||+.
T Consensus       213 LLYklId~kTe~~LHk~iki~REDVl~LYfie  244 (280)
T KOG4591|consen  213 LLYKLIDGKTENPLHKAIKIEREDVLFLYFIE  244 (280)
T ss_pred             HHHHHHcCCCcchhHHhhhccccceeeehhhh
Confidence            55555554443322  2346677777666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=6.1e-16  Score=160.58  Aligned_cols=243  Identities=16%  Similarity=0.038  Sum_probs=212.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CCh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG  461 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~  461 (721)
                      .++|.+++..|.+.+|.+.++.+|+. .+.+.+..++++|....++..|+..|...+...|.+...+.....+    +..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            37899999999999999999999998 7899999999999999999999999999999999655444443321    333


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|++.|..++.++|.+.++....|.-|.-.++.+-|+..|+|+|.+-. +++.+.|.|.++..-++++-++..|++|+.
T Consensus       307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls  386 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS  386 (478)
T ss_pred             HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999977 488888999999999999999999999999


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      ...+.                      -+.||.|-+++...-..+|+- |-.+++-||..||+++++++|+|.+-.+-|+
T Consensus       387 tat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~  444 (478)
T KOG1129|consen  387 TATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD  444 (478)
T ss_pred             hccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence            76543                      134888888888888888877 5569999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984          620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~  651 (721)
                      .++|...++.|-.++|+..|..+|+|++-...
T Consensus       445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~~  476 (478)
T KOG1129|consen  445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSVHY  476 (478)
T ss_pred             hHHHHHHHHHhhhhCccccccccceeEEeeec
Confidence            99999999999999999999998888764433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.67  E-value=7.6e-16  Score=147.67  Aligned_cols=125  Identities=12%  Similarity=0.055  Sum_probs=93.4

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      +.|++|++++|++   +.++|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3577788888875   556788888888888888888888888774 666777777777777777777776666666665


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM  624 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl  624 (721)
                      +                                                          +.+++++|.++.++|++++|+
T Consensus        91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence            4                                                          456777777888888888888


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984          625 RSLQLARQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~~  651 (721)
                      ..|++|++++|++++.+.++|+++..+
T Consensus       113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        113 EAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            888888888888888887777776554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=1.6e-15  Score=145.47  Aligned_cols=124  Identities=14%  Similarity=-0.034  Sum_probs=106.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984          500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD  579 (721)
Q Consensus       500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~  579 (721)
                      +.|++||+++|+.  ++.+|.++..+|++++|+..|++++.++|+                                   
T Consensus        14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------------------------   56 (144)
T PRK15359         14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----------------------------------   56 (144)
T ss_pred             HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------
Confidence            5677778777754  456777777777777777766666655555                                   


Q ss_pred             ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984          580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR  659 (721)
Q Consensus       580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~  659 (721)
                                             ++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+.
T Consensus        57 -----------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         57 -----------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             -----------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence                                   457789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          660 KAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       660 ~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .|++|++++|++. ++.+||.++..
T Consensus       114 ~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359        114 AFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999987 99999988753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.65  E-value=1.3e-13  Score=164.85  Aligned_cols=319  Identities=13%  Similarity=-0.042  Sum_probs=190.8

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH--HHHHHHhCCHHHHHHHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL--ARLGYIKGHKLWAYEKLN  439 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~l--g~~~~~~G~~~~A~~~~~  439 (721)
                      ...+...|+++.+..+..   .-+.+.+..++...|++++|+..+++++...+..++..+  |.++..+|++++|++.|+
T Consensus        50 ~~~Al~~L~qaL~~~P~~---~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~  126 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQ---SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ  126 (822)
T ss_pred             HHHHHHHHHHHHhhCccc---hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345555665555544432   111125555555667777777777777755444444444  667777777777777777


Q ss_pred             HHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 004984          440 SVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC  514 (721)
Q Consensus       440 ~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~  514 (721)
                      ++++.+|+++.++....    ..++.++|+..+++++.++|++... ..++.++...+++.+|+..|+++++.+|+ .+.
T Consensus       127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~  205 (822)
T PRK14574        127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEV  205 (822)
T ss_pred             HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence            77777777766665442    2355577777777777777775543 55666666666776677777777777775 443


Q ss_pred             HHHHHHHHHhcC------------------------------------------------CHHHHHHHHHHHHhh---CC
Q 004984          515 LELRFCFFLALE------------------------------------------------DYQAALCDVQAILTL---SP  543 (721)
Q Consensus       515 ~~~R~~~~~~lg------------------------------------------------d~eeAl~d~~kal~L---~P  543 (721)
                      +..+..++...|                                                -.+.|++.+++.+..   +|
T Consensus       206 ~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p  285 (822)
T PRK14574        206 LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP  285 (822)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence            332221111111                                                123356666666652   23


Q ss_pred             Cchhhh-----hhHHHHHH----------------------------HHHHHHhhhhhhHHHHHHh--------------
Q 004984          544 DYRMFE-----GRVAASQL----------------------------HMLVREHIDNWTIADCWLQ--------------  576 (721)
Q Consensus       544 ~~~~~~-----~~~~a~~~----------------------------~~~l~~~~~~~~~A~~~~~--------------  576 (721)
                      .....+     -|..+...                            .+......++.++|....+              
T Consensus       286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~  365 (822)
T PRK14574        286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD  365 (822)
T ss_pred             ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence            211111     11111111                            1111112223333322111              


Q ss_pred             -------hhhccccccccc-hHHHHHHHHHhCCC---------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984          577 -------LYDRWSSVDDIG-SLSVIYQMLESDAP---------------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH  633 (721)
Q Consensus       577 -------l~~~~~~~dd~~-al~~~~qaL~l~P~---------------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l  633 (721)
                             ||-...+.++++ |...++++....|.               -.++...++.++...|+..+|++.++..+..
T Consensus       366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~  445 (822)
T PRK14574        366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST  445 (822)
T ss_pred             chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   122222224444 55566666665552               2245566788888889999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984          634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS  684 (721)
Q Consensus       634 ~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~  684 (721)
                      .|.|++....+|-++-..|+..+|.+.++++..+.|... +.+.+|++..|-
T Consensus       446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l  497 (822)
T PRK14574        446 APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL  497 (822)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence            999999999999999999999999999988888888877 888888876654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=2.3e-13  Score=151.66  Aligned_cols=271  Identities=12%  Similarity=0.043  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH--------
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWM--------  451 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~-~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~a--------  451 (721)
                      ++...+..|.....-|+|++|++...++-+.. ++..++ ..+.+..++|+++.|...+.++.+..|+...+        
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            34556788999999999999998888876652 222233 34666699999999999999999998886433        


Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-HHHHHH---HhcC
Q 004984          452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE-LRFCFF---LALE  526 (721)
Q Consensus       452 y~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~-~R~~~~---~~lg  526 (721)
                      +...   ++.++|+..++++++.+|+++.++.-++.+|+..|++++|+..+.+..+..+. ++... .++.++   ....
T Consensus       163 ~l~~---g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        163 QLAR---NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3333   45599999999999999999999999999999999999999888888876663 32221 222111   1111


Q ss_pred             CHHHHHHHHHHHHhhC----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC
Q 004984          527 DYQAALCDVQAILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP  602 (721)
Q Consensus       527 d~eeAl~d~~kal~L~----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~  602 (721)
                      ...+....+.++++--    |++.      .+............+.++                  |...+++++. .|+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~------~~~~~~A~~l~~~g~~~~------------------A~~~L~~~l~-~~~  294 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQV------ALQVAMAEHLIECDDHDT------------------AQQIILDGLK-RQY  294 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCH------HHHHHHHHHHHHCCCHHH------------------HHHHHHHHHh-cCC
Confidence            1111222233332222    2231      111111111222222222                  2445555555 344


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA  682 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~  682 (721)
                      ++.+....+.+  ..+++++|+..+++.++..|+|++.+..+|.+++..|++++|...+|++++++|+.+.|..-|-++.
T Consensus       295 ~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~  372 (398)
T PRK10747        295 DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD  372 (398)
T ss_pred             CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            44433333332  2355556666666666666666666666666666666666666666666666666655555444443

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=2e-13  Score=152.75  Aligned_cols=280  Identities=10%  Similarity=-0.014  Sum_probs=212.2

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEK  437 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~---A~~~lg~~~~~~G~~~~A~~~  437 (721)
                      +.+.+...+.+..+..++.   .+.+...|.+..++|++++|..+|.+|.+..+..   .....++++...|+++.|.+.
T Consensus        99 ~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             CHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            3445555565555443322   3455567889999999999999999998874332   233358899999999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYM----YRASSLMTKQNVEAALAEINRILGFK  509 (721)
Q Consensus       438 ~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~----~rg~~l~~lg~~~eAl~~~~kAL~l~  509 (721)
                      +++.++.+|+++.++.-.+..    ++.++|++.+.+..+..+..+..+.    ..+.-+...+..+++++.+.++.+-.
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~  255 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ  255 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence            999999999988877666542    4559999999999987655444332    22233355566677778999999888


Q ss_pred             C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984          510 L-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV  584 (721)
Q Consensus       510 P-----~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~  584 (721)
                      |     ++..+...+..+...|++++|+..++++++..|++....    ....                  ..+..... 
T Consensus       256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~----~~~l------------------~~~~~l~~-  312 (409)
T TIGR00540       256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS----LPLC------------------LPIPRLKP-  312 (409)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch----hHHH------------------HHhhhcCC-
Confidence            8     467677788899999999999999999999999984210    0011                  11111111 


Q ss_pred             cccc-hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984          585 DDIG-SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQ--LARQHAASDHERLVYEGWILYDTSHCEEGLR  659 (721)
Q Consensus       585 dd~~-al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~  659 (721)
                      ++.. ++..++++++.+|+++  .++..+|.++.++|++++|.+.++  ++++.+|++.. +..+|.++..+|+.++|.+
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            1212 4778999999999999  899999999999999999999999  68889998766 5599999999999999999


Q ss_pred             HHHHHHhc
Q 004984          660 KAEESIQM  667 (721)
Q Consensus       660 ~ye~Ai~i  667 (721)
                      .|++++..
T Consensus       392 ~~~~~l~~  399 (409)
T TIGR00540       392 MRQDSLGL  399 (409)
T ss_pred             HHHHHHHH
Confidence            99998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.63  E-value=7.4e-15  Score=147.17  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=132.0

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      +|..|.++|++   ..|..-++||++.||++..+|.-||.+|+.+|..+.|-+.|++|+.++|+ -+-++|-|+++..+|
T Consensus        41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            44455555444   66677789999999999999999999999999999999999999999996 677888999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984          527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL  606 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~  606 (721)
                      ++++|...|++|+. +|.|                                                       |.-++.
T Consensus       118 ~~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t  141 (250)
T COG3063         118 RPEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDT  141 (250)
T ss_pred             ChHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchh
Confidence            99999999999986 6887                                                       223456


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      |.|.|.|-.++|.+..|..+|++|++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence            677777777777777777777777777777777777777777777777777777776555433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=8.2e-14  Score=150.61  Aligned_cols=258  Identities=15%  Similarity=0.157  Sum_probs=204.1

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCH-HHHH-HHHHHHHhc-CCC----cHHHHHHHhh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHK-LWAY-EKLNSVISS-VTP----LGWMYQERSL  457 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~-~~A~-~~~~~aI~~-~~~----~~~ay~~rg~  457 (721)
                      .+.|.+...+.++++|+..|+...+.+|-.  -+....++++.+.+. .-++ +....-|.. .|.    .|+-|.-|++
T Consensus       266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e  345 (559)
T KOG1155|consen  266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE  345 (559)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence            456778888899999999999987764311  122234445544442 2221 111112222 232    5677777766


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      -   ++|+..|.+|+.|||....+|.-+|-=|+++++-..||..|++||.++| |..+|+-.|.+|.-++...=|+-.|+
T Consensus       346 H---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  346 H---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             H---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            5   9999999999999999999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLL  615 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~  615 (721)
                      +|.++.|++.      ..                   |..+++..+..++.. |..+|-+|+...-.++.++.++|.++.
T Consensus       423 kA~~~kPnDs------Rl-------------------w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  423 KALELKPNDS------RL-------------------WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             HHHhcCCCch------HH-------------------HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            9999999982      23                   333333333334333 588999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          616 RLNCPEAAMRSLQLARQ-------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       616 ~lg~~eeAl~~~~~Al~-------l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ++++.++|...|.+-++       ..|.--.|...++....+.+++++|-....++..-.+--|
T Consensus       478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e  541 (559)
T KOG1155|consen  478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE  541 (559)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence            99999999999999999       6677778888899999999999999988888877654444

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.63  E-value=1.1e-15  Score=131.39  Aligned_cols=90  Identities=28%  Similarity=0.471  Sum_probs=85.9

Q ss_pred             cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHHHh
Q 004984          183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA  262 (721)
Q Consensus       183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~aA  262 (721)
                      ||++.++|+.|++||.+|++.|+||++||.+++.++....|.+++  +++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a   77 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA   77 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence            789999999999999999999999999999999888888999984  9999999999999999999 9999999999999


Q ss_pred             hhcChhhHHHHHH
Q 004984          263 NKFCCERLKDACD  275 (721)
Q Consensus       263 d~~~v~~L~~~C~  275 (721)
                      ++|+++.|++.|+
T Consensus        78 ~~~~~~~l~~~c~   90 (90)
T smart00225       78 DYLQIPGLVELCE   90 (90)
T ss_pred             HHHCcHHHHhhhC
Confidence            9999999999994

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.3e-13  Score=144.09  Aligned_cols=294  Identities=12%  Similarity=0.029  Sum_probs=233.9

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984          363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNS  440 (721)
Q Consensus       363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~A~~~lg~~~~~~G~~~~A~~~~~~  440 (721)
                      ..+...+|..-+++.    +..-.-.+|.+++..|++++|+.-|+++..++|-  .++-..|.++.+.|++..--+....
T Consensus       216 ~~t~l~le~~~~lr~----NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~  291 (564)
T KOG1174|consen  216 SQTFLMLHDNTTLRC----NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY  291 (564)
T ss_pred             hhHHHHHHhhccCCc----cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence            344455555444543    2344567899999999999999999999888642  2344456678888998877666666


Q ss_pred             HHhcCCC-------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984          441 VISSVTP-------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L  512 (721)
Q Consensus       441 aI~~~~~-------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~  512 (721)
                      .......       .+...+.+.++   ..|+..-+|+|+++|++..+|.-.|.++..+||+++|+-.|+.|+.+.|. .
T Consensus       292 Lf~~~~~ta~~wfV~~~~l~~~K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL  368 (564)
T KOG1174|consen  292 LFAKVKYTASHWFVHAQLLYDEKKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL  368 (564)
T ss_pred             HHhhhhcchhhhhhhhhhhhhhhhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence            6655432       23334445444   88999999999999999999999999999999999999999999999994 8


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSL  590 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~dd~~al  590 (721)
                      ++|.-+.-+|...|++.||..--+-++..-|+++-      +..+.|..  .....--++|                  =
T Consensus       369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKA------------------K  424 (564)
T KOG1174|consen  369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKA------------------K  424 (564)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh------hhhhhcceeeccCchhHHHH------------------H
Confidence            88877777999999999999999999999998832      33333211  1111222233                  4


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      ..++.+|.++|+...+-+.+++++.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|+
T Consensus       425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            478999999999999999999999999999999999999999999855 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCC
Q 004984          671 FEAFFLKAYALADSSQDSS  689 (721)
Q Consensus       671 ~~a~~~~~~~~~~~~~~~~  689 (721)
                      .++ -+||+-+...+.||.
T Consensus       504 ~~~-sl~Gl~~lEK~~~~~  521 (564)
T KOG1174|consen  504 SKR-TLRGLRLLEKSDDES  521 (564)
T ss_pred             chH-HHHHHHHHHhccCCC
Confidence            995 378887777666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=2.2e-14  Score=158.94  Aligned_cols=225  Identities=13%  Similarity=0.049  Sum_probs=182.5

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--c--CC
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--Y--CE  460 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--~--~~  460 (721)
                      +-.|+.+++.|.+.+|.-.|+.|++.  .|..||..||.++...++-..|+..+.++++++|++-.++..++-  .  +.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            57899999999999999999999998  478889999999999999999999999999999998777776642  2  23


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHH----HHH---HHHhcCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMY----RAS---SLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQA  530 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~----rg~---~l~~lg~~~eAl~~~~kAL~l~P---~~~~~~~R~~~~~~lgd~ee  530 (721)
                      ..+|+..+.+=|.-.|...+--..    ++.   -+..-..+..=.+.|..|...+|   +++....+|.+|.-.|+|+.
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            389999999999988765422211    000   00111123334455666666666   47777889999999999999


Q ss_pred             HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 004984          531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR  609 (721)
Q Consensus       531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~  609 (721)
                      |+.+|+.||..+|++                         +..|..|+-.+.+-++.. |+..|+|||++.|+.+++++|
T Consensus       449 aiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  449 AVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             HHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            999999999999998                         445666666666666666 799999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                      +|.....+|.++||...|=.||.+.+.
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999987

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.60  E-value=1.1e-12  Score=142.75  Aligned_cols=270  Identities=14%  Similarity=0.018  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHH----hcCCCcHHHHHHH
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVI----SSVTPLGWMYQER  455 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI----~~~~~~~~ay~~r  455 (721)
                      .....+..|......|++++|...++++++..|.+.  +.. +..+...|++..+.....+++    ..+|....++...
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            344567789999999999999999999999866554  222 445555565555555555554    4566655555444


Q ss_pred             hh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcC
Q 004984          456 SL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALE  526 (721)
Q Consensus       456 g~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lg  526 (721)
                      |.    .|+.++|+..++++++++|+++.++..+|.++.+.|++++|+..+++++...|. +    ..+..++.++..+|
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            32    255599999999999999999999999999999999999999999999999873 2    23446888999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC--CCCh
Q 004984          527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKG  604 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~--P~~~  604 (721)
                      ++++|+..|++++...|...................... ....++-|-.+.+.             .  ....  +...
T Consensus       201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~w~~~~~~-------------~--~~~~~~~~~~  264 (355)
T cd05804         201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGDRWEDLADY-------------A--AWHFPDHGLA  264 (355)
T ss_pred             CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHHHHHHHHHH-------------H--HhhcCcccch
Confidence            999999999999888873211111100001111011100 01111111111111             0  1111  2222


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      .....++.++...|+.++|.+.++......-.         .......++++++.+|++++|+....+|+.+-
T Consensus       265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            33346888899999999999999887664433         46778899999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.6e-13  Score=151.15  Aligned_cols=246  Identities=17%  Similarity=0.136  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------------
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT--------------  446 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~--------------  446 (721)
                      .+...-.+|......+++..|++.|.+||+++ ....+.+.|-+|+.+|++...+....++++..-              
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            45566789999999999999999999999996 222356688899999999988888777776422              


Q ss_pred             CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 004984          447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL  525 (721)
Q Consensus       447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l  525 (721)
                      ..|.+|..++.+   +.|+..|.+++.---+        +.++-.++..++++.+..+..-++|. .......|..+...
T Consensus       303 r~g~a~~k~~~~---~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~  371 (539)
T KOG0548|consen  303 RLGNAYTKREDY---EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK  371 (539)
T ss_pred             HhhhhhhhHHhH---HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence            245566666555   8888888886654333        67777888888888888888888886 44445678888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                      |||..|+..|++||..+|++.-.++..                  |.||..|...      ..++.+.+.+|+++|....
T Consensus       372 gdy~~Av~~YteAIkr~P~Da~lYsNR------------------Aac~~kL~~~------~~aL~Da~~~ieL~p~~~k  427 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRDPEDARLYSNR------------------AACYLKLGEY------PEALKDAKKCIELDPNFIK  427 (539)
T ss_pred             cCHHHHHHHHHHHHhcCCchhHHHHHH------------------HHHHHHHhhH------HHHHHHHHHHHhcCchHHH
Confidence            888888888888888888884433222                  2233333222      1137778888888888889


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHH
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEE  663 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-G~~deAl~~ye~  663 (721)
                      +|+++|.++..+.++..|++.|+.|++++|++.++....+-+.-.+ |+..+-+ .+++
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee-~~~r  485 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEE-TKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHH-HHHh
Confidence            9999999999999999999999999999999999888888887763 3333333 4454

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=2.5e-13  Score=139.62  Aligned_cols=165  Identities=10%  Similarity=-0.022  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhc--------C
Q 004984          462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLAL--------E  526 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~l--------g  526 (721)
                      ++|+..|++++.++|+++   .+++.+|.++...|++++|+..|+++++..|+ +.   .++.+|.++..+        |
T Consensus        50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~  129 (235)
T TIGR03302        50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT  129 (235)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence            555666677777777765   57899999999999999999999999999995 33   577888888876        8


Q ss_pred             CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984          527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL  606 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~  606 (721)
                      ++++|+..|+++++.+|++....   .+.....   .                             +...      ....
T Consensus       130 ~~~~A~~~~~~~~~~~p~~~~~~---~a~~~~~---~-----------------------------~~~~------~~~~  168 (235)
T TIGR03302       130 AAREAFEAFQELIRRYPNSEYAP---DAKKRMD---Y-----------------------------LRNR------LAGK  168 (235)
T ss_pred             HHHHHHHHHHHHHHHCCCChhHH---HHHHHHH---H-----------------------------HHHH------HHHH
Confidence            99999999999999999984211   0000000   0                             0000      1123


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      ....|.++.+.|++++|+..++++++..|++   +++++++|+++..+|++++|.+.+++...-
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4578889999999999999999999997765   589999999999999999999877665443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.57  E-value=2.7e-12  Score=153.69  Aligned_cols=321  Identities=9%  Similarity=-0.016  Sum_probs=221.7

Q ss_pred             hhHHHHHHH--hhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHH
Q 004984          345 FSLYCLLSE--VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLA  422 (721)
Q Consensus       345 ~~~~~~l~w--V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg  422 (721)
                      .....++..  +..+. .+.+.+.++++++++..++.   ..++..++..+...++.++|++.++++++.++...++ ++
T Consensus       100 ~~~~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~  174 (822)
T PRK14574        100 ISSRGLASAARAYRNE-KRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MT  174 (822)
T ss_pred             CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HH
Confidence            334444433  44443 35668888999988766544   3344566888899999999999999999886654433 55


Q ss_pred             HHHH--HhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cC-------------------------------------
Q 004984          423 RLGY--IKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC-------------------------------------  459 (721)
Q Consensus       423 ~~~~--~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~-------------------------------------  459 (721)
                      .++.  ..++..+|++.++++++.+|++..++.++-.    ++                                     
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~  254 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV  254 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence            5444  4677767999999999999987777665411    00                                     


Q ss_pred             -----------ChhHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHH
Q 004984          460 -----------EGDKRWEDLDKATALDPTLS-------YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRF  519 (721)
Q Consensus       460 -----------~~~eAl~d~~kAieLdP~~~-------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-~~~~R~  519 (721)
                                 ..+.|++.+++.+...|+.+       .+.+-|=.++...|++.+++.+|+..-.-... |. .....|
T Consensus       255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence                       11457888888888444433       34456777888888888888888877654322 33 223456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCC------ch-----hhhhh------HHHHHHHHHHHHhhh---------------h
Q 004984          520 CFFLALEDYQAALCDVQAILTLSPD------YR-----MFEGR------VAASQLHMLVREHID---------------N  567 (721)
Q Consensus       520 ~~~~~lgd~eeAl~d~~kal~L~P~------~~-----~~~~~------~~a~~~~~~l~~~~~---------------~  567 (721)
                      -.|+.++..++|+..|++++.-+|.      ..     .|+-.      ..|..++..+....-               +
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            6788888888888888888775531      11     11111      112222222222100               1


Q ss_pred             hhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984          568 WTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW  646 (721)
Q Consensus       568 ~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~  646 (721)
                      |.++.-.  +.....-.++.. |...++..+...|+|+.++..+|.++...|.|.+|+..++.+..++|++..+.+.+|.
T Consensus       415 ~~~~~~l--~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~  492 (822)
T PRK14574        415 WIEGQTL--LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE  492 (822)
T ss_pred             HHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence            1111100  011111124444 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          647 ILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       647 ~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +..++|++++|-...+..++..|...
T Consensus       493 ~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        493 TAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            99999999999999999999888766

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.56  E-value=2.9e-14  Score=151.26  Aligned_cols=178  Identities=15%  Similarity=0.159  Sum_probs=154.1

Q ss_pred             cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceE--EeCCCCCCHHHHHHHhhhhccCCCCCCCHH
Q 004984          176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDI--DLSENNISPSGLRIISDFSVTGSLNGVTPN  253 (721)
Q Consensus       176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I--~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~  253 (721)
                      ..++.-+||++..=|++.+.||..| ..|+||.+||.|.++|+++..|  +|+|++|+..+|..++.=+|.+++. |..+
T Consensus        64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~  141 (488)
T KOG4682|consen   64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS  141 (488)
T ss_pred             HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence            3577789999999999999999999 6799999999999999998655  5677789999999999999999999 9999


Q ss_pred             HHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccC--------CChHHHH
Q 004984          254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC--------LNDERVV  325 (721)
Q Consensus       254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~--------L~~~~v~  325 (721)
                      .|..+|.+|.++++++|.+.|.+.+...++ +.+++.+++.+..|+...+.+.|+++++.|+..-        ++-+-+.
T Consensus       142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~  220 (488)
T KOG4682|consen  142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMK  220 (488)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHH
Confidence            999999999999999999999999999995 8999999999999999999999999999988763        3445556


Q ss_pred             HHhccccccchhhhcccchh-hHHHHHHHhhhcCCCC
Q 004984          326 EIFSHANRQHRSIMVGLASF-SLYCLLSEVAMNLDPR  361 (721)
Q Consensus       326 ~ll~~~~~~~r~~~v~~~~~-~~~~~l~wV~~d~~~r  361 (721)
                      .++.|+++-     |-..+| ++..+.+|+=+...+.
T Consensus       221 ~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~pd  252 (488)
T KOG4682|consen  221 QLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLVPD  252 (488)
T ss_pred             HHhCCCCeE-----EEEeeehHHHHHHHHHHhhhccc
Confidence            677788773     444455 4566778987765543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.52  E-value=1.9e-11  Score=133.02  Aligned_cols=296  Identities=14%  Similarity=-0.019  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH----
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ----  453 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~----  453 (721)
                      .+++..+|..+...|+.++|...|.++.+..+     ....+..|.++...|++++|.+.+.++++.+|++..++.    
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~   85 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG   85 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence            67888899999999999999999999887732     234555788899999999999999999999999876654    


Q ss_pred             --HHhhc-CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH
Q 004984          454 --ERSLY-CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ  529 (721)
Q Consensus       454 --~rg~~-~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e  529 (721)
                        ..|.+ +..+.+...+......+|+...++..+|.++...|++++|+..++++++++|+ +..+...+.++...|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence              22322 22244444444455788888899999999999999999999999999999997 667788999999999999


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHH
Q 004984          530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYF  608 (721)
Q Consensus       530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~-~~~~~~  608 (721)
                      +|+..+++++.+.|.....  ........+.+.....++++|                  +..+++++...|. ......
T Consensus       166 eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A------------------~~~~~~~~~~~~~~~~~~~~  225 (355)
T cd05804         166 EGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAA------------------LAIYDTHIAPSAESDPALDL  225 (355)
T ss_pred             HHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHhccccCCChHHHH
Confidence            9999999999999864221  122333444455555555555                  7788888877762 222222


Q ss_pred             -HHHHHH---HHcCChHHHHHH--H-HHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 004984          609 -RQSLLL---LRLNCPEAAMRS--L-QLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS---------  670 (721)
Q Consensus       609 -~~g~~L---~~lg~~eeAl~~--~-~~Al~l~P~--~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~---------  670 (721)
                       +.+..+   ...|....+.++  . .......|.  ....-.+.++++...|+.++|....++.....-.         
T Consensus       226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  305 (355)
T cd05804         226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR  305 (355)
T ss_pred             hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence             222222   224433333333  1 111111121  2233347899999999999999999887764322         


Q ss_pred             -HHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984          671 -FEAFFLKAYALADSSQDSSCSSTVVSLLEDAL  702 (721)
Q Consensus       671 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (721)
                       -..-.++|++..-.+=    -...+.+|.+|+
T Consensus       306 ~~~~~~l~A~~~~~~g~----~~~A~~~L~~al  334 (355)
T cd05804         306 DVGLPLAEALYAFAEGN----YATALELLGPVR  334 (355)
T ss_pred             hhhHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence             3366778877776662    234555565554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.52  E-value=5.8e-12  Score=145.45  Aligned_cols=256  Identities=15%  Similarity=0.016  Sum_probs=194.5

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK  492 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l  492 (721)
                      .+.+.|+..+.+|++++|.+.+..+|...|.+..+|+..|.+    |+.++++...-.|-.|+|++.+-|..+|....++
T Consensus       141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            455667778888999999999999999999888888777754    4559999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc----hhhhhhH-------------H-
Q 004984          493 QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY----RMFEGRV-------------A-  553 (721)
Q Consensus       493 g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~----~~~~~~~-------------~-  553 (721)
                      |++++|+-.|+|||..+|. .+..+.|..+|.++|++..|..-|.+++.++|.-    .+...+.             + 
T Consensus       221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~  300 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA  300 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999996 7777889999999999999999999999999921    1111111             0 


Q ss_pred             -----------------HHHHHHHHHHhhhhhhHHHHHHhhhhc----------------------cccc----------
Q 004984          554 -----------------ASQLHMLVREHIDNWTIADCWLQLYDR----------------------WSSV----------  584 (721)
Q Consensus       554 -----------------a~~~~~~l~~~~~~~~~A~~~~~l~~~----------------------~~~~----------  584 (721)
                                       -......+--...+|+.|...+.-.-.                      .-.+          
T Consensus       301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence                             111222222333444444332221111                      0000          


Q ss_pred             ----------cccchHHHHHHHHHh-C---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHH
Q 004984          585 ----------DDIGSLSVIYQMLES-D---APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILY  649 (721)
Q Consensus       585 ----------dd~~al~~~~qaL~l-~---P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly  649 (721)
                                +.-..+.++..-+.. +   -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-||.
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence                      111111122222222 1   2457889999999999999999999999999998864 567888999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCHH
Q 004984          650 DTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       650 ~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      .+|++++|+..|++++.++|+.-
T Consensus       461 ~l~e~e~A~e~y~kvl~~~p~~~  483 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILAPDNL  483 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCch
Confidence            99999999999999999999876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.51  E-value=1.2e-11  Score=138.00  Aligned_cols=254  Identities=11%  Similarity=-0.019  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccchhh--Hh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----  458 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~-~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----  458 (721)
                      +...+....++|++++|..+|.+|.+..+...  .. ..+.++...|+++.|.+.++++++..|++.+++...+..    
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            33346666899999999999999999855442  22 347899999999999999999999999988777666432    


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHH--------HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYM--------YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ  529 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~--------~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e  529 (721)
                      ++.++|++-+.+.....+..+..+.        .+.........-+.....+++.-.-.| ++......+..+...|+.+
T Consensus       201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~  280 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD  280 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence            4559999888887777766544333        211111222222222222232222234 3666677788999999999


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984          530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR  609 (721)
Q Consensus       530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~  609 (721)
                      +|....+++++..|+...       ....+.+  ..++.+                  .++..+++.++.+|+++++++.
T Consensus       281 ~A~~~L~~~l~~~~~~~l-------~~l~~~l--~~~~~~------------------~al~~~e~~lk~~P~~~~l~l~  333 (398)
T PRK10747        281 TAQQIILDGLKRQYDERL-------VLLIPRL--KTNNPE------------------QLEKVLRQQIKQHGDTPLLWST  333 (398)
T ss_pred             HHHHHHHHHHhcCCCHHH-------HHHHhhc--cCCChH------------------HHHHHHHHHHhhCCCCHHHHHH
Confidence            999999999996665411       1111100  002222                  2588999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      .|.++.+.+++++|.+.++++++.+|++. .+..+|.++-.+|+.++|.+.|++++.+
T Consensus       334 lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        334 LGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999976 4668999999999999999999998875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.51  E-value=1.2e-11  Score=140.84  Aligned_cols=314  Identities=16%  Similarity=0.137  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhh--HhhHH-HHHHHhCCHHHHHHHHHHHHhcCC------------
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYS--IAGLA-RLGYIKGHKLWAYEKLNSVISSVT------------  446 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A--~~~lg-~~~~~~G~~~~A~~~~~~aI~~~~------------  446 (721)
                      .-|+.++..+...|.-..|+...+..+.+.  +.+.  +.-.+ .+....|...+++....++|...-            
T Consensus       358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l  437 (799)
T KOG4162|consen  358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYL  437 (799)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence            344566666666666666666666655553  3221  11122 245567888888888889998421            


Q ss_pred             CcHHHHHHHhhc--------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHH
Q 004984          447 PLGWMYQERSLY--------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLE  516 (721)
Q Consensus       447 ~~~~ay~~rg~~--------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~  516 (721)
                      -.|.+|..+..-        -...+++..+++|++.+|+|+.+.++++.=|..+++.+.|+...++++++++.  +.+|+
T Consensus       438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh  517 (799)
T KOG4162|consen  438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH  517 (799)
T ss_pred             HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence            144445444321        11278889999999999999999999999999999999999999999999883  78899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHH-------HHHHHHHHHHhhhhhh-------------------
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVA-------ASQLHMLVREHIDNWT-------------------  569 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~-------a~~~~~~l~~~~~~~~-------------------  569 (721)
                      ..+.++-..+++.+|+.-.+.+++=-|+|.. -.++..       ....++.+.+.+..|+                   
T Consensus       518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~  597 (799)
T KOG4162|consen  518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA  597 (799)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence            9999999999999999999999998888411 011111       1111111111111121                   


Q ss_pred             ----------------------------H-----------------------HHHHHhhhhccccccc-cchHHHHHHHH
Q 004984          570 ----------------------------I-----------------------ADCWLQLYDRWSSVDD-IGSLSVIYQML  597 (721)
Q Consensus       570 ----------------------------~-----------------------A~~~~~l~~~~~~~dd-~~al~~~~qaL  597 (721)
                                                  .                       -..|....+.|...+. .++..++..+=
T Consensus       598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~  677 (799)
T KOG4162|consen  598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS  677 (799)
T ss_pred             ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence                                        0                       0123333333333322 22566777777


Q ss_pred             HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCHH-HH
Q 004984          598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR--KAEESIQMKRSFE-AF  674 (721)
Q Consensus       598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~--~ye~Ai~i~~~~~-a~  674 (721)
                      .++|-.+..|+.+|.++...|..+||+..|..|+.++|+++.....+|.++...|+-.-|..  ....|++++|... ||
T Consensus       678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777776666665  6777777777776 77


Q ss_pred             HHHHHH---hhccCCCCCchhhHHHH
Q 004984          675 FLKAYA---LADSSQDSSCSSTVVSL  697 (721)
Q Consensus       675 ~~~~~~---~~~~~~~~~~~~~~~~~  697 (721)
                      |.-|-+   ++|+.--.+|-.+-++|
T Consensus       758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  758 YYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhh
Confidence            777754   35555555555555554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.49  E-value=5.5e-12  Score=126.76  Aligned_cols=203  Identities=18%  Similarity=0.065  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      ..+..+||.-|++.|++..|..-+++||+.+|.+.  |..+|.+|..+|+.+                            
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~----------------------------   86 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND----------------------------   86 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------------------------
Confidence            34556777777788888888778888877766553  444455555555544                            


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                        .|-+.|++|+.++|++.+..+|-|.-+..+|++++|..-|++|++ +|.    ++.+.|.|+|-.+.|+.+.|..+|+
T Consensus        87 --~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063          87 --LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             --hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence              455567888888888888899999999999999999999999997 453    5678889999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      ++++++|++...      ...+....-...++..|                  -..+++-...-+-.++..-..-.+-.+
T Consensus       164 raL~~dp~~~~~------~l~~a~~~~~~~~y~~A------------------r~~~~~~~~~~~~~A~sL~L~iriak~  219 (250)
T COG3063         164 RALELDPQFPPA------LLELARLHYKAGDYAPA------------------RLYLERYQQRGGAQAESLLLGIRIAKR  219 (250)
T ss_pred             HHHHhCcCCChH------HHHHHHHHHhcccchHH------------------HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            999999998431      11111111222233333                  334444444444444443333334455


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                      +|+...|-+.-.+.-++.|...+-
T Consensus       220 ~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         220 LGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHH
Confidence            788888888878888888877653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.6e-13  Score=145.11  Aligned_cols=239  Identities=14%  Similarity=0.085  Sum_probs=181.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      .|..++.+.+|..|+..|+.||...|+++..|.+|.    .++++++|+-|..+.++++|.+...+...+.++..++...
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence            455577788888888888888888888888887774    3466688888888888888888888888888887777777


Q ss_pred             HHHHHHH---------------HHHhcCCC-HHH--HHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          497 AALAEIN---------------RILGFKLA-LEC--LEL-RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       497 eAl~~~~---------------kAL~l~P~-~~~--~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      +|-..++               +.+.-.-. |.+  +.. -+.++.-+|++++|+..=-.++++||.+..      +...
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~------al~v  208 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE------ALYV  208 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH------HHHh
Confidence            6664433               11111111 222  222 345788889999999988889999998843      4444


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH------------HHHHHHHHHHcCChHHHHH
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL------------YFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~------------~~~~g~~L~~lg~~eeAl~  625 (721)
                      ++.+.--....++|                  ...+.|+|.++|.+..+            |-.+|+=+.+.|++..|-+
T Consensus       209 rg~~~yy~~~~~ka------------------~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E  270 (486)
T KOG0550|consen  209 RGLCLYYNDNADKA------------------INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE  270 (486)
T ss_pred             cccccccccchHHH------------------HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence            44333333333333                  66889999999988765            6688999999999999999


Q ss_pred             HHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          626 SLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       626 ~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .|..||.++|++.    --|.|++.+...+||.+||+..-++|++|+|++. |+..+|-+..|
T Consensus       271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            9999999999865    4589999999999999999999999999999999 99999876543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=2.7e-12  Score=151.07  Aligned_cols=159  Identities=9%  Similarity=-0.055  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      .+++.-...-.+-.|+++.++.++|.+..++|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            44444333444557888899999999999999999999999999999997 66677888888888888888776666666


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      .+|++                                                          +.+++.+|.+|.++|++
T Consensus       149 ~~p~~----------------------------------------------------------~~~~~~~a~~l~~~g~~  170 (694)
T PRK15179        149 GGSSS----------------------------------------------------------AREILLEAKSWDEIGQS  170 (694)
T ss_pred             cCCCC----------------------------------------------------------HHHHHHHHHHHHHhcch
Confidence            66665                                                          56678899999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 004984          621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKA  678 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~~~a~~~~~  678 (721)
                      ++|.+.|+++++-+|+++++++++|.+|..+|+.++|...|++|++. .|..-+|.++.
T Consensus       171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999997 45444665544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=135.88  Aligned_cols=226  Identities=12%  Similarity=0.043  Sum_probs=193.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ  493 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg  493 (721)
                      .+|++|+.+|-+.+|.+.+.++++..|-      +..+|...   .+...|+..|...++--|.+.-.....|-++..++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri---dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI---DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh---ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            5899999999999999999999998763      33444433   44489999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984          494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD  572 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~  572 (721)
                      ++++|+..|+++++++|. .++.---+.-|.--++.|-|++.|++++.+.-.+..      ...+.++.=...+|++.+ 
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~-  377 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLV-  377 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhh-
Confidence            999999999999999995 554333445577789999999999999999888744      444445444455666666 


Q ss_pred             HHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          573 CWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY  649 (721)
Q Consensus       573 ~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly  649 (721)
                                       |.+|.||+...-   ..++.|+|+|.+..-.|++--|.++++.|+-.+|+++++++|+|.+--
T Consensus       378 -----------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  378 -----------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA  440 (478)
T ss_pred             -----------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence                             889999998764   457889999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCHH
Q 004984          650 DTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       650 ~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ..|+.++|-..+.-|-+..|.-.
T Consensus       441 r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             hcCchHHHHHHHHHhhhhCcccc
Confidence            99999999999999999999743

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.2e-11  Score=137.02  Aligned_cols=216  Identities=13%  Similarity=-0.002  Sum_probs=169.9

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK  492 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l  492 (721)
                      +|+-+|.-|+..|.+.+|.+.|.|+..++|..|.+|..-|..    +..+.|+++|.+|-++-|....|+.++|.=|+.+
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence            455566666666666666666666666666666666655542    3348888899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hhhhhHHHHHHHHHHHHhhhhhhH
Q 004984          493 QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MFEGRVAASQLHMLVREHIDNWTI  570 (721)
Q Consensus       493 g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~-~~~~~~~a~~~~~~l~~~~~~~~~  570 (721)
                      ++++-|-..|..|+.+.|+ |--.+-.|.+....+.|.+|+..|+++++.-+..- .-.--.....++|.+...+..+++
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            9999999999999999996 66667789999999999999999999995333210 000012245555655666666666


Q ss_pred             HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984          571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD  650 (721)
Q Consensus       571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~  650 (721)
                      |                  +..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|++.-+---+|.++-+
T Consensus       474 A------------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  474 A------------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             H------------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            6                  8899999999999999999999999999999999999999999999997776667755544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.44  E-value=5.4e-12  Score=127.55  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCC--HHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALED--YQAALCDVQ  536 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd--~eeAl~d~~  536 (721)
                      .++++..|.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.+ +...|+  +++|+..++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            378888889999999999999999999999999999999999999988885 6766667764 355554  244444444


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                                                                                ++++.+|+++.+++++|..+..
T Consensus       135 ----------------------------------------------------------~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        135 ----------------------------------------------------------KALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             ----------------------------------------------------------HHHHhCCCChhHHHHHHHHHHH
Confidence                                                                      4444444445677778888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                      +|++++|+..++++++++|.+.+.
T Consensus       157 ~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        157 QADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCccH
Confidence            888888888888888888876655

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.43  E-value=5.7e-12  Score=129.52  Aligned_cols=163  Identities=18%  Similarity=0.097  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQ  453 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~---ay~  453 (721)
                      ....++.+|..+...|++++|+..|+++++..|.     .++..+|.++...|++++|+..|+++++.+|+.+.   +++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            4567789999999999999999999999998543     46788999999999999999999999999997654   566


Q ss_pred             HHhhc------------CChhHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 004984          454 ERSLY------------CEGDKRWEDLDKATALDPTLSYPY-----------------MYRASSLMTKQNVEAALAEINR  504 (721)
Q Consensus       454 ~rg~~------------~~~~eAl~d~~kAieLdP~~~~ay-----------------~~rg~~l~~lg~~~eAl~~~~k  504 (721)
                      .+|..            +..++|+..|+++++.+|++..++                 ..+|.++...|++++|+..|++
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            66542            234889999999999999997653                 4678999999999999999999


Q ss_pred             HHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          505 ILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       505 AL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      ++...|+    ++.++.+|.++..+|++++|+..++.....-|+
T Consensus       192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            9999774    467888999999999999999988777665553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.42  E-value=1.5e-11  Score=139.20  Aligned_cols=231  Identities=14%  Similarity=0.089  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc-------cchh--hHh-hHHHHHHHhCCHHHHHHHHHHHHhc--------
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIY--SIA-GLARLGYIKGHKLWAYEKLNSVISS--------  444 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~~~--A~~-~lg~~~~~~G~~~~A~~~~~~aI~~--------  444 (721)
                      ..+..+++..+..+|+|+.|+..|+.|+++       +|..  ... .+|.+|..+|++.+|+..|.+|+.+        
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            455567999999999999999999999988       3322  233 4899999999999999999999975        


Q ss_pred             CC-------CcHHHHHHHhhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          445 VT-------PLGWMYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK  509 (721)
Q Consensus       445 ~~-------~~~~ay~~rg~~~~~~eAl~d~~kAieL--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~  509 (721)
                      +|       |++.+|+++|++   +||...+++|+++        .|.-+..+.+.|.++...+++++|+..+++++++-
T Consensus       279 h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            33       455556555555   8888888888865        34556778889999999999999999999998862


Q ss_pred             ---C-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 004984          510 ---L-----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR  580 (721)
Q Consensus       510 ---P-----~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~  580 (721)
                         |     . +....+.|.+|..+|+|++|...|++|+++.-....                                 
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~---------------------------------  402 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG---------------------------------  402 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---------------------------------
Confidence               2     1 223456788999999999999999999987533200                                 


Q ss_pred             cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCC
Q 004984          581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       581 ~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~  653 (721)
                                       ..++.......++|....+++++++|-..|.+++.+.       |+-...+-|+|-+|-.+|+
T Consensus       403 -----------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~  465 (508)
T KOG1840|consen  403 -----------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN  465 (508)
T ss_pred             -----------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence                             0122233445566677777777777777777777653       4455677788888888888


Q ss_pred             HHHHHHHHHHHHh
Q 004984          654 CEEGLRKAEESIQ  666 (721)
Q Consensus       654 ~deAl~~ye~Ai~  666 (721)
                      +|+|++..++++.
T Consensus       466 ~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  466 YEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887774

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2.9e-12  Score=133.28  Aligned_cols=157  Identities=14%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH  558 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~  558 (721)
                      +-..+=|+=+++-++|++|+.-|++||+|+|. +-.|.+|+.+|.++|.++.|+.|++.||.+||.|             
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-------------  148 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-------------  148 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-------------
Confidence            34456677777777777777777777777774 5555677777777777777777777777777776             


Q ss_pred             HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       559 ~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                                                                   ..+|-++|.++..+|++++|++.|++||+++|++.
T Consensus       149 ---------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  149 ---------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             ---------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence                                                         24566677777777777777777777777777777


Q ss_pred             hHHHHHHHHHHhcCCHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          639 ERLVYEGWILYDTSHCE---EGLRKAEESIQM-K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~d---eAl~~ye~Ai~i-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      ..--+++|+-..++.-.   .+....+-+-.+ . |++-.-|+       .+|  .+-.-|.++.....+
T Consensus       184 ~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-------~~l--~nnp~l~~~~~~m~~  244 (304)
T KOG0553|consen  184 SYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-------GDL--MNNPQLMQLASQMMK  244 (304)
T ss_pred             HHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-------ccc--ccCHHHHHHHHHHhh
Confidence            77777777766665555   444444444444 2 56653332       122  223445666666555

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=1.9e-12  Score=134.62  Aligned_cols=95  Identities=23%  Similarity=0.269  Sum_probs=86.0

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |.-..+-++|   ++|+..|++||+|+|+++-.|.|||.+|.++|.++.|+.+..+||.+||. ..+|--+|.+|..+|+
T Consensus        88 GN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   88 GNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            4444444455   99999999999999999999999999999999999999999999999998 5666677999999999


Q ss_pred             HHHHHHHHHHHHhhCCCch
Q 004984          528 YQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~  546 (721)
                      +++|++.|+|||+|+|++.
T Consensus       165 ~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHHhhhccCCCcH
Confidence            9999999999999999994

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.38  E-value=1.5e-11  Score=124.24  Aligned_cols=83  Identities=11%  Similarity=0.073  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L-~~lg~--~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +..|++++.++|+++.++++.|.++ ...|+  .++|.+.+++|++++|++.+++.++|.+++.+|++++|++.|+++++
T Consensus        93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370         93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3344444444555567788888876 67787  59999999999999999999999999999999999999999999999


Q ss_pred             cCCCHH
Q 004984          667 MKRSFE  672 (721)
Q Consensus       667 i~~~~~  672 (721)
                      +.|...
T Consensus       173 l~~~~~  178 (198)
T PRK10370        173 LNSPRV  178 (198)
T ss_pred             hCCCCc
Confidence            988744

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.36  E-value=9.4e-12  Score=116.50  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF  674 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~  674 (721)
                      ++.+|+++|.++.++|++++|...++++++++|++++.++++|++++.+|++++|++.++++++++|+...+
T Consensus        50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            345667777788888888888888888888888888888888888888888888888888888888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.36  E-value=4.8e-13  Score=151.42  Aligned_cols=141  Identities=18%  Similarity=0.293  Sum_probs=119.8

Q ss_pred             CCCCCccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCC----C
Q 004984          177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNG----V  250 (721)
Q Consensus       177 ~~~~~~DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~----i  250 (721)
                      +.+...|+.+.. +|+.++|||++|++++.||..||..-+.|+..-.+...  .+..+.|+.+|+|+|+ ++..-    -
T Consensus       706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~  783 (1267)
T KOG0783|consen  706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK  783 (1267)
T ss_pred             CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence            344555666655 78889999999999999999999999999988666665  4889999999999995 43330    1


Q ss_pred             CHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCC
Q 004984          251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN  320 (721)
Q Consensus       251 ~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~  320 (721)
                      ..+-+.++|..||.|-+.+|+..|+.-|...++ ..+|-.+++||..|+|.+|...|++|+..|+...|.
T Consensus       784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Le  852 (1267)
T KOG0783|consen  784 ESDFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLE  852 (1267)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence            345689999999999999999999999999994 899999999999999999999999999998866443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.36  E-value=3.9e-11  Score=136.10  Aligned_cols=216  Identities=15%  Similarity=0.043  Sum_probs=170.5

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE  466 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~  466 (721)
                      -.++..+...|-..+|...|++      .+.+.+...+|...|+..+|.....+-++ .|+.+..|.-+|+.   -.--.
T Consensus       402 ~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s  471 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPS  471 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChH
Confidence            3678888889999999998888      45566777889999999999888888888 89999999999887   44456


Q ss_pred             HHHHHHhc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          467 DLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       467 d~~kAieL-dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      .|+||+++ +-.++.|.+++|......++|++|..++++.++++|- .+.|+.+|++..++++++.|..+|.+...++|+
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            78888888 5567788899999999999999999999999999995 899999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM  624 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl  624 (721)
                      +..+.+..++.+.+.      .+-.+                  |-..+.+||.-+-.+...|-|--.+..+.|.+++|+
T Consensus       552 ~~eaWnNls~ayi~~------~~k~r------------------a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRL------KKKKR------------------AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             chhhhhhhhHHHHHH------hhhHH------------------HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            844333333222211      11111                  345666777777777777777777777777777777


Q ss_pred             HHHHHHHHhCCC
Q 004984          625 RSLQLARQHAAS  636 (721)
Q Consensus       625 ~~~~~Al~l~P~  636 (721)
                      +.|.+-+.+.-+
T Consensus       608 ~A~~rll~~~~~  619 (777)
T KOG1128|consen  608 KAYHRLLDLRKK  619 (777)
T ss_pred             HHHHHHHHhhhh
Confidence            777777766544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=2.6e-11  Score=142.89  Aligned_cols=143  Identities=13%  Similarity=0.022  Sum_probs=115.9

Q ss_pred             hcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH
Q 004984          443 SSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL  517 (721)
Q Consensus       443 ~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~  517 (721)
                      ..||.+..++.+.+.    .+++++|...++++++++|++..+..++|.++.++++++||+..+++++..+|+ +..++.
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            344444444444432    234477777888999999999999999999999999999999999999999996 788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 004984          518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML  597 (721)
Q Consensus       518 R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL  597 (721)
                      +|.++.++|++++|+..|+++++.+|++                                                    
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~----------------------------------------------------  187 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEF----------------------------------------------------  187 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCc----------------------------------------------------
Confidence            9999999999999999888888866654                                                    


Q ss_pred             HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984          598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY  643 (721)
Q Consensus       598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~  643 (721)
                            +.++.++|.+|..+|+.++|...|++|++...+-.-.+.+
T Consensus       188 ------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        188 ------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence                  4567788889999999999999999999998887766443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.33  E-value=5.8e-09  Score=124.56  Aligned_cols=277  Identities=8%  Similarity=-0.046  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH----hhc
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER----SLY  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~r----g~~  458 (721)
                      .+..+-..|...|++++|.+.|++..+ ....+|..+...|.+.|+.++|++.|++..+.  .|+ ...|...    +..
T Consensus       261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~  338 (697)
T PLN03081        261 VSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRL  338 (697)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Confidence            334455666667777777777765422 33445666666777777777777777666543  222 2222221    223


Q ss_pred             CChhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLd-P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      +..++|...+..+++.. +.+...|+.+...|.+.|++++|...|++..  .|+...|+.....|.+.|+.++|+..|++
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34466666666666665 4556666777777777777777777777665  35555566666666777777777777776


Q ss_pred             HHh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhhhccccccccc-hHHHHHHHHHhCCCCh
Q 004984          538 ILT--LSPDYRMFEGRVAASQLHMLVREHIDNWTIAD----------CWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKG  604 (721)
Q Consensus       538 al~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~  604 (721)
                      ..+  +.|+...|..-..+....+.++...+.++...          .|..+.+.+.+.++.+ |...++++ ...| ++
T Consensus       417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~  494 (697)
T PLN03081        417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TV  494 (697)
T ss_pred             HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CH
Confidence            655  45665444333333333333333322222221          1112222222233333 45555544 1233 34


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      ..|..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|.+.+++.-+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            567788888888999999999999999999998889999999999999999999888876654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.32  E-value=5.8e-11  Score=137.72  Aligned_cols=248  Identities=16%  Similarity=0.089  Sum_probs=190.2

Q ss_pred             HhccchHHHHHHHHHHHhccchh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC----hh
Q 004984          394 LLRKEYDEAEHLFEAAVNAGHIY-------SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE----GD  462 (721)
Q Consensus       394 ~~~g~y~eA~~~f~~AL~~~~~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~----~~  462 (721)
                      .....+.++.-+|-++++++-.-       .+...+..-+.+.+...|+..+-+++.++++.|.+|.-.|.|.+    ..
T Consensus       430 ~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~  509 (1238)
T KOG1127|consen  430 FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK  509 (1238)
T ss_pred             cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence            33455666666666666552111       11112222344556888888888999999999999988887643    36


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL---ECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      .|..+|+||.+|||+++.++...+..|.+....++|.+..-++-+..|..   ..|.-||..|.+-+++-+|+.+|+.|+
T Consensus       510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL  589 (1238)
T KOG1127|consen  510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL  589 (1238)
T ss_pred             HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence            77888999999999999999999999999999999999877777777742   335558888999999999999999999


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg  618 (721)
                      +.+|++                         ..||..+++.+.+-+++. |+.++++|..++|.+.-..|-.+.....+|
T Consensus       590 R~dPkD-------------------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  590 RTDPKD-------------------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             cCCchh-------------------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            999987                         567888888888888888 888999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHHHHh
Q 004984          619 CPEAAMRSLQLARQHAASDHERLVYEGWIL-------YDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L-------y~~G~~deAl~~ye~Ai~  666 (721)
                      .+++|+..+...+....+..-++..+|.++       +-+|=.-.|...++++|+
T Consensus       645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999999888888777666666665554       445667777777777765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.32  E-value=3.2e-11  Score=112.92  Aligned_cols=116  Identities=22%  Similarity=0.213  Sum_probs=93.7

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .|.++++++|+++.+...+|..+...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            477888888888888888888888888888888888888888885 6777778888888888888777766666665554


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                                                                                +..++++|.++..+|++++|+.
T Consensus        85 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        85 ----------------------------------------------------------PRPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             ----------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence                                                                      4567778888888888888888


Q ss_pred             HHHHHHHhCCCChhH
Q 004984          626 SLQLARQHAASDHER  640 (721)
Q Consensus       626 ~~~~Al~l~P~~~ea  640 (721)
                      .++++++++|++...
T Consensus       107 ~~~~al~~~p~~~~~  121 (135)
T TIGR02552       107 ALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHhccccchH
Confidence            888888888887763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.31  E-value=7.4e-09  Score=127.52  Aligned_cols=287  Identities=13%  Similarity=0.053  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH---
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER---  455 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~r---  455 (721)
                      ..+..+-..+...|++++|.+.|++..+.+   ....|..+...|.+.|+.++|++.|.+..+.  .|+ ...|...   
T Consensus       473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a  551 (1060)
T PLN03218        473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence            344444455555666666666666655542   2334444555566666666666666555443  222 2222111   


Q ss_pred             -hhcCChhHHHHHHHHHHh----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCH
Q 004984          456 -SLYCEGDKRWEDLDKATA----LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDY  528 (721)
Q Consensus       456 -g~~~~~~eAl~d~~kAie----LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P~~~~~~~R~~~~~~lgd~  528 (721)
                       +..+..++|...|++..+    +.|+ ...|..+-.+|.+.|++++|+..|++..+.+  |+...|......|.+.|++
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence             222334666666665543    3444 3455556666666666666666666666543  2344444455556666666


Q ss_pred             HHHHHHHHHHHhh--CCCchhhhhhHHHHHHHHHHHHhhhhhhH---------HHHHHhhhhccccccccc-hHHHHHHH
Q 004984          529 QAALCDVQAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTI---------ADCWLQLYDRWSSVDDIG-SLSVIYQM  596 (721)
Q Consensus       529 eeAl~d~~kal~L--~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------A~~~~~l~~~~~~~dd~~-al~~~~qa  596 (721)
                      ++|+..|+...+.  .|+...|..-..+....+.++.+.+.+++         ...|..+...+...++.+ |..+++++
T Consensus       631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            6666666665553  45532222222222222222222222221         122333334444445555 57788887


Q ss_pred             HHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC
Q 004984          597 LES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRS  670 (721)
Q Consensus       597 L~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~--i~~~  670 (721)
                      .+.  .| +...|+.+-..+.+.|++++|++.+++..+  +.|+ ...+..+-..+...|++++|+..+++.++  +.|+
T Consensus       711 ~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        711 KSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            654  44 567799999999999999999999997765  4565 55777777888899999999999999987  5777


Q ss_pred             HHHH
Q 004984          671 FEAF  674 (721)
Q Consensus       671 ~~a~  674 (721)
                      ...|
T Consensus       789 ~~ty  792 (1060)
T PLN03218        789 LVMC  792 (1060)
T ss_pred             HHHH
Confidence            6644

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=4.1e-09  Score=120.57  Aligned_cols=315  Identities=16%  Similarity=0.069  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHhh-
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSL-  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~~~ay~~rg~-  457 (721)
                      ...+-.+.......|++..+.+.|++++..  +...-|+.++..+...|....|+...+......  |+....+..-++ 
T Consensus       323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl  402 (799)
T KOG4162|consen  323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL  402 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence            344556777888899999999999999877  556678888999999999999999999988887  765555544332 


Q ss_pred             ----cCChhHHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCC-HHHHH
Q 004984          458 ----YCEGDKRWEDLDKATALD-----PTLSYPYMYRASSLMTKQN-----------VEAALAEINRILGFKLA-LECLE  516 (721)
Q Consensus       458 ----~~~~~eAl~d~~kAieLd-----P~~~~ay~~rg~~l~~lg~-----------~~eAl~~~~kAL~l~P~-~~~~~  516 (721)
                          .+..++++..-.|||.+-     --.+..|.-.|.+|-.+-+           +.+++..+++|++++|+ +...+
T Consensus       403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if  482 (799)
T KOG4162|consen  403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF  482 (799)
T ss_pred             HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence                234499999999999832     1225678888888865432           67899999999999995 88888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH-----------------------
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC-----------------------  573 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~-----------------------  573 (721)
                      ..+.-|...++.+.|+...+++++++|.+.     ..+..++.++....+++..|.-                       
T Consensus       483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  483 YLALQYAEQRQLTSALDYAREALALNRGDS-----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence            999999999999999999999999999874     3345555555555555544421                       


Q ss_pred             ------------HHhhhhcccc-------c-----------------cccchHHHHH--------HHHHhC---------
Q 004984          574 ------------WLQLYDRWSS-------V-----------------DDIGSLSVIY--------QMLESD---------  600 (721)
Q Consensus       574 ------------~~~l~~~~~~-------~-----------------dd~~al~~~~--------qaL~l~---------  600 (721)
                                  +.+....|..       .                 +-.++.....        |.....         
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence                        1112222331       0                 1111111111        111111         


Q ss_pred             --CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          601 --APKG-------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       601 --P~~~-------~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                        |+..       ..|...|.++.+.+...+|..++..|-.+.|-.+..++-+|..+...|.++||.+.|.-|+.++|+-
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence              2333       3466889999999999999999999999999999999999999999999999999999999999987


Q ss_pred             H-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984          672 E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC  704 (721)
Q Consensus       672 ~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (721)
                      . +---.|-.+.-.+  ..+=...-++|-||+|=
T Consensus       718 v~s~~Ala~~lle~G--~~~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  718 VPSMTALAELLLELG--SPRLAEKRSLLSDALRL  749 (799)
T ss_pred             cHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh
Confidence            6 8777888877777  22233445789999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.29  E-value=1.6e-10  Score=134.19  Aligned_cols=163  Identities=13%  Similarity=-0.007  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHhhc
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP--LGWMYQERSLY  458 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~--~~~ay~~rg~~  458 (721)
                      +.++.-+|..|..-.+...|.++|++|.++++.++  ..+.+..|....+.+.|.....++-+..|.  --+.|..||-|
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            67888899999998899999999999999976654  556777899999999998876666666553  23555557765


Q ss_pred             ----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 004984          459 ----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       459 ----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~~~~~lgd~eeAl~  533 (721)
                          +...+|+.+|.-|++.+|++...|..+|.+|.+-|++..|+..|+||..++|..- .-+.-+.....+|.|++|+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence                2338999999999999999999999999999999999999999999999999643 33456778899999999999


Q ss_pred             HHHHHHhhCCCc
Q 004984          534 DVQAILTLSPDY  545 (721)
Q Consensus       534 d~~kal~L~P~~  545 (721)
                      -+..++.-...+
T Consensus       652 ~l~~ii~~~s~e  663 (1238)
T KOG1127|consen  652 ALGLIIYAFSLE  663 (1238)
T ss_pred             HHHHHHHHHHHH
Confidence            999888765554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.29  E-value=2.7e-10  Score=129.10  Aligned_cols=266  Identities=16%  Similarity=0.076  Sum_probs=191.0

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------cCC-------CcHH
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------SVT-------PLGW  450 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--------~~~-------~~~~  450 (721)
                      .|.....+...+.|++|+.-++++....-.+++..++..  .++.. ..+..+.....        ..|       +++.
T Consensus       131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~  207 (508)
T KOG1840|consen  131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGE--KQEED-SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAE  207 (508)
T ss_pred             HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccc--ccccc-ccchhhHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence            455666666777788888777765433212223322211  11110 11111111111        122       3777


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HH
Q 004984          451 MYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LE  513 (721)
Q Consensus       451 ay~~rg~~~~~~eAl~d~~kAieL--------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--------P~-~~  513 (721)
                      +|..+|++   ++|..-+.+|++.        .|..+...++.|.+|+.++++.+|+..|++|+.+-        |. ..
T Consensus       208 ~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  208 MYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            88888777   9999999999999        88888888999999999999999999999999872        22 23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          514 CLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      .+.+++.+|...|++++|...+++|+++--.- ....++++ .......+......+++|.   .++.+        ++.
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~--------al~  353 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK---KLLQK--------ALK  353 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH---HHHHH--------HHH
Confidence            45778999999999999999999999976541 11233333 4666777777788888884   22221        344


Q ss_pred             HHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          592 VIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAE  662 (721)
Q Consensus       592 ~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~Ly~~G~~deAl~~ye  662 (721)
                      .+.++..-+ |.-+..+.|+|.++..+|+++||.+.|++|+...        +..+-.++++|..+++.+++++|-+.|+
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            444444443 3667789999999999999999999999999886        3456789999999999999999999999


Q ss_pred             HHHhcC
Q 004984          663 ESIQMK  668 (721)
Q Consensus       663 ~Ai~i~  668 (721)
                      +++.|.
T Consensus       434 ~~~~i~  439 (508)
T KOG1840|consen  434 EAKDIM  439 (508)
T ss_pred             HHHHHH
Confidence            999984

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=9.7e-09  Score=107.72  Aligned_cols=302  Identities=13%  Similarity=0.015  Sum_probs=224.6

Q ss_pred             HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHH
Q 004984          347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARL  424 (721)
Q Consensus       347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~  424 (721)
                      ..+...|+......+.    ...+.+.+++.+        |..|+-++...+.++|+..|-..++.++  .+++.-+|+.
T Consensus        11 vaaa~GWymgrrsaqq----~~~~qa~~lsr~--------Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnL   78 (389)
T COG2956          11 VAAAYGWYMGRRSAQQ----DKQDQANRLSRD--------YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNL   78 (389)
T ss_pred             HHHHHHHHHhhhHHHh----hHHHHHhhccHH--------HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            4567788865422111    112223334443        3567777788899999999999888854  4467778999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTPL-----GWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV  495 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~~-----~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~  495 (721)
                      +..+|..+.|++.....++ .|++     ..+.++.|+    .|.++.|-..|+.-++..---..|.-.+-.+|......
T Consensus        79 fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW  157 (389)
T COG2956          79 FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW  157 (389)
T ss_pred             HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence            9999999999987664444 3331     233333332    13338888888877765555567888899999999999


Q ss_pred             HHHHHHHHHHHhcCCCH---HH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 004984          496 EAALAEINRILGFKLAL---EC---LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT  569 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~~---~~---~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~  569 (721)
                      +.||+...+...+.|+.   +.   +--.+..+....+.+.|+..+.||++-||+.      +.+...+|.+.....+++
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~  231 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQ  231 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchH
Confidence            99999999999888852   22   2235666778889999999999999999998      556777777777777777


Q ss_pred             HHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                      +|                  +..++++++-||.. ++....+..++..+|++++.+..++++.+..+.. ++...+....
T Consensus       232 ~A------------------V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~li  292 (389)
T COG2956         232 KA------------------VEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLI  292 (389)
T ss_pred             HH------------------HHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHH
Confidence            77                  77788888888876 4556778889999999999999999999999984 4555566666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 004984          649 YDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ  686 (721)
Q Consensus       649 y~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~  686 (721)
                      ....-.++|-....+=+.-+|+.- -+.+-.|-++|-+=
T Consensus       293 e~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee  331 (389)
T COG2956         293 ELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE  331 (389)
T ss_pred             HHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence            666667888889999999999999 66789999999764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.28  E-value=7.6e-09  Score=116.18  Aligned_cols=265  Identities=16%  Similarity=0.052  Sum_probs=212.6

Q ss_pred             ccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChhHHHHHHH
Q 004984          396 RKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLD  469 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~eAl~d~~  469 (721)
                      -|-.++-...+++|+..-  ....+.-.+.-+...||.-+|...+.+|++.+|+.-.+|..-    +...+++.|..-|.
T Consensus       563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla  642 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA  642 (913)
T ss_pred             cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence            466777777888888772  333445556677888999999999999999999987777665    33456688888899


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984          470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~  548 (721)
                      ||-...|+ ...|+.-+....-+++.+||+.-++++|+.-|++. .|...|.++..+++.+.|...|..-++.-|+-+  
T Consensus       643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i--  719 (913)
T KOG0495|consen  643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI--  719 (913)
T ss_pred             HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc--
Confidence            98887776 46788888888889999999999999999888854 445588899999999999999999999999873  


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ  628 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~  628 (721)
                          ....++..+++...+...|                  -++++++.-.+|.++.+|.-.=-.-++.|+.+.|.....
T Consensus       720 ----pLWllLakleEk~~~~~rA------------------R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  720 ----PLWLLLAKLEEKDGQLVRA------------------RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             ----hHHHHHHHHHHHhcchhhH------------------HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence                3566666666666666666                  667888888888888888877777888888888888888


Q ss_pred             HHHHhCCC------------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHH
Q 004984          629 LARQHAAS------------------------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFF  675 (721)
Q Consensus       629 ~Al~l~P~------------------------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~---a~~  675 (721)
                      +||+--|+                              |+..+...|-.++...++++|...|+||+.++|++.   |||
T Consensus       778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f  857 (913)
T KOG0495|consen  778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF  857 (913)
T ss_pred             HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence            88887774                              555666778888899999999999999999999987   999


Q ss_pred             HHHHHhhccC
Q 004984          676 LKAYALADSS  685 (721)
Q Consensus       676 ~~~~~~~~~~  685 (721)
                      .|=++..-+-
T Consensus       858 ykfel~hG~e  867 (913)
T KOG0495|consen  858 YKFELRHGTE  867 (913)
T ss_pred             HHHHHHhCCH
Confidence            9988876543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=7.4e-10  Score=119.43  Aligned_cols=260  Identities=12%  Similarity=0.028  Sum_probs=166.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHhhc---
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY---  458 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G--~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---  458 (721)
                      .+.+..++..|+++.|++...--=+.+.   ..|-.++..+++.+|  ++..|-..-..|+.++..++.++.+.|+.   
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~  502 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA  502 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence            3456667788888888876654222221   223345666777776  44556666677788877788888888763   


Q ss_pred             -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                       |++++|.+-|..|+.-|...+++.+|.|..+-.+|+.++|+..|-|.-.+-.+ .+-++..+.+|.-+.+..+||+.+.
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence             67788888888898888888899999999988899999999888876665443 5666777888888888899999998


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhC
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA-DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESD  600 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-~~~~~l~~~~~~--------------~dd~~-al~~~~qaL~l~  600 (721)
                      ++..+=|+++.      .+..++.+...-.+-.+| .|+-.-|-.+..              ....+ |+..+++|--+.
T Consensus       583 q~~slip~dp~------ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq  656 (840)
T KOG2003|consen  583 QANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ  656 (840)
T ss_pred             HhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            88888888843      333332222222222222 111111111100              01111 345566666666


Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      |+.+.-....+.|+.+.|.++.|...|+..-+.-|.+.+-+-.+--+--++|
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            6666666666666666666666666666666666666666655555555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.28  E-value=9e-09  Score=126.75  Aligned_cols=315  Identities=10%  Similarity=0.001  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER---  455 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~r---  455 (721)
                      ...|..+=..+...|++++|.+.|++..+.+   ....+..+-..|.+.|+.++|.+.|.+..+... ++...|...   
T Consensus       437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g  516 (1060)
T PLN03218        437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG  516 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4455556666778899999999999988774   344566677889999999999999998887532 233333222   


Q ss_pred             -hhcCChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCH
Q 004984          456 -SLYCEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKLALECLELRFCFFLALEDY  528 (721)
Q Consensus       456 -g~~~~~~eAl~d~~kAie--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~----l~P~~~~~~~R~~~~~~lgd~  528 (721)
                       .+.++.++|+..|++..+  +.|+ ...|+.+..++.+.|++++|...|++..+    +.|+...+......|.+.|++
T Consensus       517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l  595 (1060)
T PLN03218        517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV  595 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence             234555999999988865  4565 67899999999999999999999999865    577777677777789999999


Q ss_pred             HHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH---------HHHHhhhhccccccccc-hHHHHHHH
Q 004984          529 QAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA---------DCWLQLYDRWSSVDDIG-SLSVIYQM  596 (721)
Q Consensus       529 eeAl~d~~kal~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------~~~~~l~~~~~~~dd~~-al~~~~qa  596 (721)
                      ++|++.|+...+.+  |+-..|..-+.++...+.++.+.+-+++.         ..|..+.+.+...++.+ |..++++|
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999876  33333333333333333333333333222         24455555555566666 77788888


Q ss_pred             HHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCH
Q 004984          597 LESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF  671 (721)
Q Consensus       597 L~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~--i~~~~  671 (721)
                      ++.. +-+...|..+...+.+.|+.++|++.|+...+  +.|+ ...+..+-..+.+.|++++|+..+++...  +.|+.
T Consensus       676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            8765 44567888888888888888888888887755  4564 56788888888888888888888887654  67887


Q ss_pred             HHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       672 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      ..|..---++....    .-....++++++.+
T Consensus       755 ~Ty~sLL~a~~k~G----~le~A~~l~~~M~k  782 (1060)
T PLN03218        755 ITYSILLVASERKD----DADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence            76665444444322    23445556665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.28  E-value=3.8e-09  Score=126.11  Aligned_cols=153  Identities=13%  Similarity=0.030  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CC------cHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TP------LGWM  451 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~------~~~a  451 (721)
                      ...|..+...+.+.|++++|++.|++.++.+.   ...+..+-.++...|+...+...+..+++..  |+      +..+
T Consensus       189 ~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~  268 (697)
T PLN03081        189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM  268 (697)
T ss_pred             eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence            45566667777777778888887777765531   1222223333333444444433333333221  10      1122


Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 004984          452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ  529 (721)
Q Consensus       452 y~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e  529 (721)
                      |...   |+.++|...|++.   .+.+...|+.+...|...|++++|+..|++..+  +.|+...+.....++.++|+++
T Consensus       269 y~k~---g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        269 YSKC---GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE  342 (697)
T ss_pred             HHHC---CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence            2222   3336666555543   234555666666666666666666666665543  3444444444444555555555


Q ss_pred             HHHHHHHHHHhh
Q 004984          530 AALCDVQAILTL  541 (721)
Q Consensus       530 eAl~d~~kal~L  541 (721)
                      +|.+.+..+++.
T Consensus       343 ~a~~i~~~m~~~  354 (697)
T PLN03081        343 HAKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.26  E-value=2.6e-09  Score=130.71  Aligned_cols=302  Identities=16%  Similarity=0.090  Sum_probs=202.7

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c----h
Q 004984          349 CLLSEVAMNLDPRSDKTVCFLERLLESAE------TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H----I  415 (721)
Q Consensus       349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~------~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~----~  415 (721)
                      ....|+..... +......+++++.....      ...........+|.++...|++++|...+++|++. .  .    .
T Consensus       413 ~~~a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (903)
T PRK04841        413 LLQAWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence            34455544332 44555556665443211      11113344456888999999999999999999884 1  1    1


Q ss_pred             hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------cHHHHHHHhhcCChhHHHHHHHHHHhcCCC-----
Q 004984          416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------------LGWMYQERSLYCEGDKRWEDLDKATALDPT-----  477 (721)
Q Consensus       416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~-----  477 (721)
                      .+...+|.++...|++++|...+.+++.....             .+.++..+   |+.++|...+++++++-..     
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ---GFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhcccc
Confidence            24566888899999999999999999875332             23333444   4459999999999887222     


Q ss_pred             ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984          478 ---LSYPYMYRASSLMTKQNVEAALAEINRILGFKL----A--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       478 ---~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P----~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~  548 (721)
                         ....+..+|.++...|++++|.+.+++++.+..    .  ...+..++.++...|++++|.+.++++..+.+.....
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence               234567889999999999999999999988632    2  2334457889999999999999999998875543110


Q ss_pred             -hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHH
Q 004984          549 -EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       549 -~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeA  623 (721)
                       ..................+.+.|..|...                  .....+...    ..+..+|.++..+|++++|
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~------------------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  710 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQ------------------APKPEFANNHFLQGQWRNIARAQILLGQFDEA  710 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHh------------------cCCCCCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence             00000111111122224455555433222                  221111111    2256789999999999999


Q ss_pred             HHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          624 MRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       624 l~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ...+++|++...      ..+.++..+|.+++..|+.++|...+++|+++-....
T Consensus       711 ~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        711 EIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence            999999998743      3446889999999999999999999999999854433

>PLN03077 Protein ECB2; Provisional

Probab=99.25  E-value=4.6e-08  Score=119.53  Aligned_cols=270  Identities=10%  Similarity=0.028  Sum_probs=164.5

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSV  441 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~a  441 (721)
                      .+...++++.+.+....  .+...+..+-..|...|++++|.+.|++..+. ...+|..+...+.+.|+.++|+..|.+.
T Consensus       405 ~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m  481 (857)
T PLN03077        405 LDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQM  481 (857)
T ss_pred             HHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33444555554432211  12345566777788888999998888875443 3446677777888888888888888887


Q ss_pred             HhcCCCcHHHHHH-------H--------------------------------hhcCChhHHHHHHHHHHhcCCCChHHH
Q 004984          442 ISSVTPLGWMYQE-------R--------------------------------SLYCEGDKRWEDLDKATALDPTLSYPY  482 (721)
Q Consensus       442 I~~~~~~~~ay~~-------r--------------------------------g~~~~~~eAl~d~~kAieLdP~~~~ay  482 (721)
                      +...+++...|..       .                                ++.|+.++|+..|+..    +.+...|
T Consensus       482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~  557 (857)
T PLN03077        482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW  557 (857)
T ss_pred             HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence            7543333222211       1                                1123335565555554    3445566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCchhhhhhHHHHHH
Q 004984          483 MYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAILT---LSPDYRMFEGRVAASQL  557 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~---L~P~~~~~~~~~~a~~~  557 (721)
                      +.+...|...|+.++|+..|++.++  +.|+...+...-.++...|++++|...|+...+   +.|+-..          
T Consensus       558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~----------  627 (857)
T PLN03077        558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH----------  627 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH----------
Confidence            6666666666666666666665554  344433333333445556666666666665552   3444211          


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                                   ..|.+.++-+   .++.+ |...++++ .+.|+ +..|..+-.+...-|..+.|....+++++++|+
T Consensus       628 -------------y~~lv~~l~r---~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~  689 (857)
T PLN03077        628 -------------YACVVDLLGR---AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN  689 (857)
T ss_pred             -------------HHHHHHHHHh---CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence                         1111222222   22222 35566665 35555 455655555667788899999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          637 DHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       637 ~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      ++..++.+++++...|++++|.+..+.-.+
T Consensus       690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        690 SVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999999999999999999988776654

>PLN03077 Protein ECB2; Provisional

Probab=99.25  E-value=7.5e-09  Score=126.38  Aligned_cols=329  Identities=10%  Similarity=-0.024  Sum_probs=201.5

Q ss_pred             cccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh
Q 004984          340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA  419 (721)
Q Consensus       340 v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~  419 (721)
                      +.+..+.+..+++-....  ...+...+++..+.+...  ..+...+..+...+...|++++|.+.|++..+ ....+|.
T Consensus       284 ~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n  358 (857)
T PLN03077        284 VDPDLMTITSVISACELL--GDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWT  358 (857)
T ss_pred             CCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH
Confidence            344555566666544322  123344455555444221  11355667788888999999999999998543 3455677


Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhc--CCC---cHHHHHHHhhcCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcC
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISS--VTP---LGWMYQERSLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQ  493 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~--~~~---~~~ay~~rg~~~~~~eAl~d~~kAieLdP~-~~~ay~~rg~~l~~lg  493 (721)
                      .+...|.+.|++++|++.|++..+.  .|+   ...+....+..++.++|.+.++.+++.... +...|+.+-..|.+.|
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g  438 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK  438 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence            8888999999999999999977654  344   233333334456669999999888887543 4677888999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-
Q 004984          494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIA-  571 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-  571 (721)
                      ++++|...|++..  +|+...|......|...|+.++|+..|++... +.|+...+..-..+....+.++...+-+..+ 
T Consensus       439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            9999999999876  46666677777778889999999999999875 5677655544444444444444433333222 


Q ss_pred             -----------HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCC
Q 004984          572 -----------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASD  637 (721)
Q Consensus       572 -----------~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~  637 (721)
                                 .+++..|-+   .++++ |...|+++    +.+...|+.+...+.+.|+.++|++.|++..+  +.||.
T Consensus       517 ~~g~~~~~~~~naLi~~y~k---~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~  589 (857)
T PLN03077        517 RTGIGFDGFLPNALLDLYVR---CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE  589 (857)
T ss_pred             HhCCCccceechHHHHHHHH---cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence                       111122222   12222 34444443    44555666666666666666666666665554  33442


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHhhc
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESI---QMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai---~i~~~~~a~~~~~~~~~~  683 (721)
                      . .+..+=..+...|++++|+..|++..   .+.|+.+.|..-..+|+-
T Consensus       590 ~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        590 V-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             c-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            2 33333344555566666666666554   245665555544444433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.7e-09  Score=116.01  Aligned_cols=251  Identities=15%  Similarity=0.015  Sum_probs=194.6

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984          363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNS  440 (721)
Q Consensus       363 ~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~  440 (721)
                      ...+..+|. ++|...+.-.  +.-..|..+...|++++-...-...+.+  .+..-|+--|.+.+...++..|+..-.+
T Consensus       249 ~~a~~~Fe~-~~~~dpy~i~--~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  249 FQAEDIFSS-TLCANPDNVE--AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             hHHHHHHHH-HhhCChhhhh--hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            345556666 3333333222  2234566677788887766666665555  3444566667788889999999999999


Q ss_pred             HHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 004984          441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL  515 (721)
Q Consensus       441 aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~  515 (721)
                      +|..+|++-.+|.-.|..    ++.++|+-.|+.|+.|.|-.-..|-.+-..|...|++.||+...+.++..=|+ ...+
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L  405 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL  405 (564)
T ss_pred             HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence            999999999998888753    66799999999999999999999999999999999999999999999998785 6777


Q ss_pred             HHHH-H-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 004984          516 ELRF-C-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI  593 (721)
Q Consensus       516 ~~R~-~-~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~  593 (721)
                      .+.| . ++..----|+|..-++++++++|+|..+      ....            |    .+.......+|+  ++.+
T Consensus       406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A------V~~~------------A----EL~~~Eg~~~D~--i~LL  461 (564)
T KOG1174|consen  406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA------VNLI------------A----ELCQVEGPTKDI--IKLL  461 (564)
T ss_pred             hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH------HHHH------------H----HHHHhhCccchH--HHHH
Confidence            7776 3 3334444689999999999999999532      2221            1    233333344444  8999


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                      ++.|...|.. .+|.-+|.++...|-+++||+.|..|++++|++.-++
T Consensus       462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            9999999875 6799999999999999999999999999999988654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=3.8e-09  Score=114.04  Aligned_cols=208  Identities=11%  Similarity=0.059  Sum_probs=100.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CC
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE  460 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~  460 (721)
                      .+.|.+.+..|+|+.|.+.|+.||.-+.  ..|+++.|..+-.+|+.++|+.+|-+.-.+-.+++..+++...+    ..
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led  573 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED  573 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence            3444555555555555555555554422  33445555555555555555555555444444444444444332    12


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      ...|++.|.+|..+=|+++.....+|.+|-+.|+-.+|...+=..-..=| +.+....++.-|+...=++.||..|++|.
T Consensus       574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa  653 (840)
T KOG2003|consen  574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA  653 (840)
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            24455555555555555555555555555555555555555544444444 23333444444555555555555555555


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg  618 (721)
                      -+.|+-.-|.       +.           .|.|       +.+.+.+. |+..|.+.....|.+.+..--+-.+--.+|
T Consensus       654 liqp~~~kwq-------lm-----------iasc-------~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  654 LIQPNQSKWQ-------LM-----------IASC-------FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             hcCccHHHHH-------HH-----------HHHH-------HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            5555531111       00           0111       11122233 477778888888887775533333333344


Q ss_pred             C
Q 004984          619 C  619 (721)
Q Consensus       619 ~  619 (721)
                      -
T Consensus       709 l  709 (840)
T KOG2003|consen  709 L  709 (840)
T ss_pred             c
Confidence            3

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.18  E-value=2.5e-10  Score=125.60  Aligned_cols=96  Identities=19%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |..++..|++   ++|+..|++||+++|+++.+|.+||.++..+|++++|+.++++||.++|+ +..++.+|.++..+|+
T Consensus         9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            3444455445   89999999999999999999999999999999999999999999999996 7778889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCchh
Q 004984          528 YQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~  547 (721)
                      +++|+..|+++++++|++..
T Consensus        86 ~~eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSR  105 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999854

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.15  E-value=7.3e-10  Score=127.13  Aligned_cols=144  Identities=10%  Similarity=0.058  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc-chH
Q 004984          515 LELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI-GSL  590 (721)
Q Consensus       515 ~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~-~al  590 (721)
                      ++.||.-+...++   .+.|+..|++|+++||+|..++...+..+...      ..|...          . -.+. .+.
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~------~~~~~~----------~-~~~l~~a~  404 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR------HSQQPL----------D-EKQLAALS  404 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HhcCCc----------c-HHHHHHHH
Confidence            3567766655544   77888889999999999854332221111110      000000          0 0001 123


Q ss_pred             HHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          591 SVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       591 ~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      ....+++++  +|..+.+|.-+|......|++++|++.+++|++++| +..+|..+|.++...|++++|+..|++|+.++
T Consensus       405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456676774  889999999999999999999999999999999999 58999999999999999999999999999999


Q ss_pred             CCHHHHHH
Q 004984          669 RSFEAFFL  676 (721)
Q Consensus       669 ~~~~a~~~  676 (721)
                      |+++.|++
T Consensus       484 P~~pt~~~  491 (517)
T PRK10153        484 PGENTLYW  491 (517)
T ss_pred             CCCchHHH
Confidence            99997765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.14  E-value=6.2e-10  Score=122.42  Aligned_cols=112  Identities=14%  Similarity=0.128  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML  560 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~  560 (721)
                      +...|..+...|++++|+..|++||+++|+ +..+.+||.++..+|++++|+.++++|++++|++               
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------------   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---------------   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence            456788888889999999999999999996 7778888888999999888888888777777765               


Q ss_pred             HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984          561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                                                                 +.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus        70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF  106 (356)
T ss_pred             -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence                                                       3567888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 004984          641 LVYEGWILYDT  651 (721)
Q Consensus       641 ~~~~G~~Ly~~  651 (721)
                      +..++.+...+
T Consensus       107 ~~~l~~~~~kl  117 (356)
T PLN03088        107 TKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHH
Confidence            88888776555

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.11  E-value=1.6e-08  Score=113.94  Aligned_cols=266  Identities=13%  Similarity=-0.006  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC---
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC---  459 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~---  459 (721)
                      +++....-..+.|+|....+..++.|+.  .|.++++-.|..+.-+|+.++|+...+.++..++.....|.-.|.+.   
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            3444445556778899999999998887  68889999999999999999999999999999998777777776543   


Q ss_pred             -ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          460 -EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       460 -~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                       ++++|+.+|..|+.++|+|...|..++....++++++.....-++-++++|+. ..|.-.+..+.-.|++..|+.-.+.
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e  168 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE  168 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34999999999999999999999999999999999999999999999999974 4455677788999999999887766


Q ss_pred             HHhhC---CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHH
Q 004984          538 ILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQS  611 (721)
Q Consensus       538 al~L~---P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g  611 (721)
                      -....   |.... +-+.....-+..+.......++|                     ++.-....|   +..-....+|
T Consensus       169 f~~t~~~~~s~~~-~e~se~~Ly~n~i~~E~g~~q~a---------------------le~L~~~e~~i~Dkla~~e~ka  226 (700)
T KOG1156|consen  169 FEKTQNTSPSKED-YEHSELLLYQNQILIEAGSLQKA---------------------LEHLLDNEKQIVDKLAFEETKA  226 (700)
T ss_pred             HHHhhccCCCHHH-HHHHHHHHHHHHHHHHcccHHHH---------------------HHHHHhhhhHHHHHHHHhhhHH
Confidence            66644   43211 11122111111111111112222                     111111111   1223345689


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHH
Q 004984          612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly-~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      .++.+++++|+|...|+.-+..+||+.+=+..+-.++. -++..+-=-..|.+.-+.=|-++
T Consensus       227 ~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e  288 (700)
T KOG1156|consen  227 DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE  288 (700)
T ss_pred             HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence            99999999999999999999999999987776666664 34433332266776666655555

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=5.1e-09  Score=107.44  Aligned_cols=177  Identities=16%  Similarity=0.018  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ..+...+-++...+|++... .+++..+...|+-+.++....++.--.|. .+.+...|......|++.+|+..++++.+
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            44555566667777777777 77777777777777777777775555553 44444566667777777777777777777


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      ++|++      ..++..++.......+.+.|                  -.-|.|++++.|+++...+|+|..+.-.|+.
T Consensus       129 l~p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         129 LAPTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             cCCCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            77776      33444444444444444444                  3456777777777788888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      +.|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus       185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            8888888888888888888888888888888888888655444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.10  E-value=1e-08  Score=115.47  Aligned_cols=238  Identities=12%  Similarity=0.078  Sum_probs=183.8

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA  500 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~  500 (721)
                      .+..++|...++.....++.+|..|..+-..|.    .|+.++|...-..++..||...--|.-+|.++...++|+|||.
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence            577789999999999999999999999988875    3677999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      .|+.|+.+.|+ ...+.-.+.+...+||++.....=.+.++++|.+.+ +.|-..+.++.+.-..+....++..   +.-
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~---~t~  173 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE---KTQ  173 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence            99999999996 688888999999999999999999999999999865 5566666666655444444444442   111


Q ss_pred             hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984          579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL  658 (721)
Q Consensus       579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl  658 (721)
                      +.-.      +-..+++.        ++...+...+...|.+++|++....-=..--|.---.-.+|.++.++|++++|.
T Consensus       174 ~~~~------s~~~~e~s--------e~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~  239 (700)
T KOG1156|consen  174 NTSP------SKEDYEHS--------ELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV  239 (700)
T ss_pred             ccCC------CHHHHHHH--------HHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence            1000      01122222        233445566777888887777655433322233334456789999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHH
Q 004984          659 RKAEESIQMKRSFEAFFLKAY  679 (721)
Q Consensus       659 ~~ye~Ai~i~~~~~a~~~~~~  679 (721)
                      ..|+.-|..+|+.-+|+..-.
T Consensus       240 ~~y~~Ll~rnPdn~~Yy~~l~  260 (700)
T KOG1156|consen  240 KVYRRLLERNPDNLDYYEGLE  260 (700)
T ss_pred             HHHHHHHhhCchhHHHHHHHH
Confidence            999999999999998876543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.09  E-value=5.1e-09  Score=107.42  Aligned_cols=164  Identities=16%  Similarity=0.010  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCChhHHHHHHHHHHhcC
Q 004984          402 AEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALD  475 (721)
Q Consensus       402 A~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~~~eAl~d~~kAieLd  475 (721)
                      |...+-++...+  .... .+++..++..|+-+.+.....++.-.+|..+..+...|    ..|++.+|+..+.||.+++
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            333444444443  3445 78899999999999999999988888887665553332    2355599999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |+++.+|+-+|.+|.+.|++++|-..|++|+++.|+ +....|.|+.+.-.||++.|...+..+...-|.+      ..+
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v  204 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRV  204 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHH
Confidence            999999999999999999999999999999999996 8888999999999999999999999999988877      457


Q ss_pred             HHHHHHHHHhhhhhhHHH
Q 004984          555 SQLHMLVREHIDNWTIAD  572 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~  572 (721)
                      .+.+.++...+.+++.|.
T Consensus       205 ~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         205 RQNLALVVGLQGDFREAE  222 (257)
T ss_pred             HHHHHHHHhhcCChHHHH
Confidence            777777888888888885

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.08  E-value=1.1e-07  Score=90.88  Aligned_cols=197  Identities=21%  Similarity=0.226  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHH
Q 004984          462 DKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFC-FFLALEDYQAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAie--LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~-~~~~lgd~eeAl~d~~k  537 (721)
                      ..++..+..++.  ..|.....+...|..+...+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  155 (291)
T COG0457          76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK  155 (291)
T ss_pred             HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444444445554  666777777777777777777777777777777766653 32333444 67777777777777777


Q ss_pred             HHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHH
Q 004984          538 ILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLL  615 (721)
Q Consensus       538 al~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~-~~~~~~~~g~~L~  615 (721)
                      ++..+|. ...    .......+........++.                  ++..+.+++...|. ....+.+.+..+.
T Consensus       156 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (291)
T COG0457         156 ALELDPELNEL----AEALLALGALLEALGRYEE------------------ALELLEKALKLNPDDDAEALLNLGLLYL  213 (291)
T ss_pred             HHhcCCCccch----HHHHHHhhhHHHHhcCHHH------------------HHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence            7776663 100    1111111111111122222                  36677777888877 6888888999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984          616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~  683 (721)
                      ..+..++|+..+..++...|+........+..+...|.++++...+++++...|.   ++..|+.+..
T Consensus       214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  278 (291)
T COG0457         214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL  278 (291)
T ss_pred             HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence            9999999999999999999998888999999999888899999999999999997   4444444433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=3.2e-10  Score=93.99  Aligned_cols=67  Identities=12%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR  669 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G-~~deAl~~ye~Ai~i~~  669 (721)
                      ++..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|++.+++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            67899999999999999999999999999999999999999999999999 79999999999999998

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.08  E-value=1.1e-10  Score=122.45  Aligned_cols=216  Identities=11%  Similarity=0.028  Sum_probs=145.2

Q ss_pred             CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc
Q 004984          447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLAL  525 (721)
Q Consensus       447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~l  525 (721)
                      .-|.-|+.+|.|   +|||.+|.++|.++|.++-.|.|||.+|..++++..|..|.+.||.||-.+ .+|..|+.+...+
T Consensus       102 E~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  102 ERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             Hhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            457777888777   999999999999999999999999999999999999999999999988764 5566688899999


Q ss_pred             CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--hhhhH-------HH-HHHhhh-hc-----ccccccc-c
Q 004984          526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI--DNWTI-------AD-CWLQLY-DR-----WSSVDDI-G  588 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~--~~~~~-------A~-~~~~l~-~~-----~~~~dd~-~  588 (721)
                      |..++|..||+.+|+|.|+.....      .....+....  +-..+       |. -..|.. .+     ++.-..+ .
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELk------K~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~  252 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELK------KSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV  252 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHH------HHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence            999999999999999999974311      1111111000  00000       00 000111 00     0000111 1


Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      ++.++-+.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+---.|...|+-+.++-++.+.
T Consensus       253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~  331 (536)
T KOG4648|consen  253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA  331 (536)
T ss_pred             ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence            344555555555556666656 6666666677777777777777777766666666776666677777777777777666


Q ss_pred             CCHH
Q 004984          669 RSFE  672 (721)
Q Consensus       669 ~~~~  672 (721)
                      |..+
T Consensus       332 P~~~  335 (536)
T KOG4648|consen  332 PAVE  335 (536)
T ss_pred             cccc
Confidence            6654

>PRK11906 transcriptional regulator; Provisional

Probab=99.07  E-value=2.5e-09  Score=118.09  Aligned_cols=144  Identities=12%  Similarity=0.113  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHH---hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccccc--cccchHHHHHHHHHhC
Q 004984          527 DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWSSV--DDIGSLSVIYQMLESD  600 (721)
Q Consensus       527 d~eeAl~d~~kal---~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~~~--dd~~al~~~~qaL~l~  600 (721)
                      +.+.|+..|++|+   ++||+|..+++-.                  |.|+++. +-.|+..  +..+++...++|+++|
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~l------------------A~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld  334 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLL------------------AECHMSLALHGKSELELAAQKALELLDYVSDIT  334 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHH------------------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence            4567788888888   8888885443322                  3333333 3334331  1222677999999999


Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY  679 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~  679 (721)
                      |.++.+++..|.++...|+++.|+..+++|+.++|+.+.++++.||++.-.|+.++|++..++|++++|.=. |=-+|=+
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~  414 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC  414 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887 7777776


Q ss_pred             H--hhccCCCC
Q 004984          680 A--LADSSQDS  688 (721)
Q Consensus       680 ~--~~~~~~~~  688 (721)
                      .  +.-+.||-
T Consensus       415 ~~~~~~~~~~~  425 (458)
T PRK11906        415 VDMYVPNPLKN  425 (458)
T ss_pred             HHHHcCCchhh
Confidence            5  56666664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.06  E-value=1.6e-08  Score=120.75  Aligned_cols=146  Identities=11%  Similarity=-0.049  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC  459 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~  459 (721)
                      +..++..+...+...+++++|++..+.+++..  ...+++.+|.++++.|++..|...  +++...+...          
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----------   97 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----------   97 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----------
Confidence            34666778888889999999999999999884  455788889999999998777554  4554443222          


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                       ..+++++|-+.+...|++-+|++.+|.+|-.+|+.++|.+.|+++|+++|+ +.++++.|..|... ++++|+..+.+|
T Consensus        98 -~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720         98 -KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             -chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence             013344444455555555555555555555555555555555555555553 45555555555555 555555555555


Q ss_pred             Hhh
Q 004984          539 LTL  541 (721)
Q Consensus       539 l~L  541 (721)
                      ++.
T Consensus       176 V~~  178 (906)
T PRK14720        176 IYR  178 (906)
T ss_pred             HHH
Confidence            554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.05  E-value=6.7e-10  Score=92.07  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=62.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSP  543 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P  543 (721)
                      +++..|.++|.+++.+|++++|+..|++||+++|+ +..++++|.++..+| ++++|+.+|+++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36789999999999999999999999999999997 788899999999999 79999999999999998

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.05  E-value=4.2e-09  Score=101.53  Aligned_cols=110  Identities=9%  Similarity=-0.026  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      .+..+..|..+...|++++|.+-|+.+..+||.                                               
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-----------------------------------------------   67 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-----------------------------------------------   67 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------------------------------
Confidence            455666777777778877777766665555554                                               


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---  668 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~---  668 (721)
                                 +++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.+++..|+.++|.+.|+.||++-   
T Consensus        68 -----------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         68 -----------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             -----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence                       456788888888888888888888888888888888888888888888888888888888888873   


Q ss_pred             CCHHHHHHHHH
Q 004984          669 RSFEAFFLKAY  679 (721)
Q Consensus       669 ~~~~a~~~~~~  679 (721)
                      |.+..---||-
T Consensus       137 ~~~~~l~~~A~  147 (157)
T PRK15363        137 SEHQILRQRAE  147 (157)
T ss_pred             hhHHHHHHHHH
Confidence            55555444443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.03  E-value=9.8e-07  Score=99.67  Aligned_cols=252  Identities=11%  Similarity=-0.043  Sum_probs=173.9

Q ss_pred             HHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHH
Q 004984          393 RLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWED  467 (721)
Q Consensus       393 ~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d  467 (721)
                      .....++++|...|.+|-.. +-...|..-+++-.-+|..++|++.++++++.+|.....|...|++    +..+.|.+.
T Consensus       628 e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  628 EFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34456777777777777665 3344555555666667777777777777777777777777766654    233666777


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      |..-+...|+....|..++.+--..|+.-.|-..++|+.--||+ ...|...-.+-++.|..+.|.....+||+--|+..
T Consensus       708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence            77777777777777777777777777777777777777777775 34333334455667777777777777777777762


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984          547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS  626 (721)
Q Consensus       547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~  626 (721)
                            ......--+....++-+                      -...||..+-++++...-.|.++..-..++.|..+
T Consensus       788 ------~LWaEaI~le~~~~rkT----------------------ks~DALkkce~dphVllaia~lfw~e~k~~kar~W  839 (913)
T KOG0495|consen  788 ------LLWAEAIWLEPRPQRKT----------------------KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW  839 (913)
T ss_pred             ------hhHHHHHHhccCcccch----------------------HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence                  11111111111111111                      23457888888899999999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      |.+|+..+|++++++.+.=-.....|.-+.-...|.+-..-.|...
T Consensus       840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG  885 (913)
T KOG0495|consen  840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG  885 (913)
T ss_pred             HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence            9999999999999988777777777876666667776666666554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.00  E-value=1.1e-06  Score=94.88  Aligned_cols=277  Identities=15%  Similarity=0.118  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCC------cHHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTP------LGWMY  452 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~------~~~ay  452 (721)
                      +...-+-|...+.-|+|..|++...++-+-+.  .-++..-+++-.++||.+.|-.++.++-+.  +++      .+...
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            44556778888999999999999999766643  434455577889999999999999999998  443      23444


Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CHHHHHHHHH--HHHhcC
Q 004984          453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFC--FFLALE  526 (721)
Q Consensus       453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P----~~~~~~~R~~--~~~~lg  526 (721)
                      .++|++   ..|..-.+++.+..|.++....-.--+|...|++++.+....+.-+-.-    ....+.+.++  ++.+.+
T Consensus       164 l~~~d~---~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         164 LNRRDY---PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             HhCCCc---hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence            455555   9999999999999999999999999999999999999888777665433    1233344443  333333


Q ss_pred             CHHHHHH------HHHHHHhhCCCchhhh-hhH-------HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984          527 DYQAALC------DVQAILTLSPDYRMFE-GRV-------AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV  592 (721)
Q Consensus       527 d~eeAl~------d~~kal~L~P~~~~~~-~~~-------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~  592 (721)
                      +-+.+..      +.-+.++-+|.-...+ -+.       .|...  ..+...++|+.=  +..++++..--|.-.=+..
T Consensus       241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~--i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~  316 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI--IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKA  316 (400)
T ss_pred             ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH--HHHHHHhccChh--HHHHHhhcCCCCchHHHHH
Confidence            3333332      1223333334321110 000       01111  111122222222  2233333322222223446


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      +++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++|-+.+++++.+
T Consensus       317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777776 445677777777777777777777777653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=3.5e-09  Score=102.04  Aligned_cols=81  Identities=11%  Similarity=0.024  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|...|+-...+||.++..|+++|.++..+|++++||..|.+|+.++|+ |..+++.|.++..+|+.++|...|+.|+.
T Consensus        52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363         52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777788899999999999999999999999999999999999999996 88889999999999999999999999999


Q ss_pred             hC
Q 004984          541 LS  542 (721)
Q Consensus       541 L~  542 (721)
                      ..
T Consensus       132 ~~  133 (157)
T PRK15363        132 IC  133 (157)
T ss_pred             Hh
Confidence            87

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.00  E-value=2e-07  Score=114.30  Aligned_cols=280  Identities=10%  Similarity=-0.019  Sum_probs=189.2

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc-c------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA-G------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GW  450 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~------~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-----~~  450 (721)
                      ..++.+....|++++|...+.+|.+. .      +    ......+|.++...|++++|...+.++++..+..     +.
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            45677778889999999999988654 1      1    1223456788899999999999999999864431     22


Q ss_pred             HHHHHhh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C----
Q 004984          451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL-----A----  511 (721)
Q Consensus       451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-----~----  511 (721)
                      ++...|.    .|+.++|...+++|+++....      ..++.++|.++...|++++|...+++++.+-.     .    
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3333332    356699999999999874432      34667899999999999999999999998622     1    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      ...+..++.++...|++++|...+++++++...... .....+...++.+.....+++.|                  ..
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A------------------~~  633 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA------------------RR  633 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH------------------HH
Confidence            122345778888999999999999999997553211 01122333444444455555555                  55


Q ss_pred             HHHHHHHhCCCCh---hHHH----HHHHHHHHcCChHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhcCCHHHHHHH
Q 004984          592 VIYQMLESDAPKG---VLYF----RQSLLLLRLNCPEAAMRSLQLARQHAASDHER----LVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       592 ~~~qaL~l~P~~~---~~~~----~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea----~~~~G~~Ly~~G~~deAl~~  660 (721)
                      .+++++.+.+...   ....    .....+...|..++|.+.+++.....+.....    +.++|.++..+|++++|+..
T Consensus       634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  713 (903)
T PRK04841        634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII  713 (903)
T ss_pred             HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5666665533221   1111    12345566899999999988876544333222    46899999999999999999


Q ss_pred             HHHHHhcCCC------HH-HHHHHHHHhhccC
Q 004984          661 AEESIQMKRS------FE-AFFLKAYALADSS  685 (721)
Q Consensus       661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~  685 (721)
                      ++++++....      .. +..+.|.++.-.+
T Consensus       714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G  745 (903)
T PRK04841        714 LEELNENARSLRLMSDLNRNLILLNQLYWQQG  745 (903)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence            9999986211      11 4555566655444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=1.9e-07  Score=107.07  Aligned_cols=240  Identities=15%  Similarity=0.089  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHH--HHHHHhC-----CHHHHHHHHHHHHhcCCC-------
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKG-----HKLWAYEKLNSVISSVTP-------  447 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg--~~~~~~G-----~~~~A~~~~~~aI~~~~~-------  447 (721)
                      +......+|..+...|++++|...|...|+.+|....++.|  .+....+     +...-.+.|.+..+.+|.       
T Consensus        37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl  116 (517)
T PF12569_consen   37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL  116 (517)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence            34455778999999999999999999999998776644444  3332222     345556677666555542       


Q ss_pred             -----cHHHHHHH-------h--------------hcCCh------hHHHHHHHHHHhcC------------CCC--hHH
Q 004984          448 -----LGWMYQER-------S--------------LYCEG------DKRWEDLDKATALD------------PTL--SYP  481 (721)
Q Consensus       448 -----~~~ay~~r-------g--------------~~~~~------~eAl~d~~kAieLd------------P~~--~~a  481 (721)
                           .|..+..+       +              .|.+.      .+-+..|...++-+            |-.  ..+
T Consensus       117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~  196 (517)
T PF12569_consen  117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT  196 (517)
T ss_pred             hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence                 22222221       1              12211      11122333333221            111  357


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML  560 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~  560 (721)
                      |+.+|..|-..|++++|+..+++||+..|. ++.+..+|.++...|++++|...++.|.+||+.+.. .+...+...+  
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy-iNsK~aKy~L--  273 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY-INSKCAKYLL--  273 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH-HHHHHHHHHH--
Confidence            789999999999999999999999999997 888888999999999999999999999999999864 3333343332  


Q ss_pred             HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                         ...+.++|.-.+.++.+    ++.+....+..|--     ..+...-|.++.+.|++..|+.-|....++--+
T Consensus       274 ---Ra~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc-----~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  274 ---RAGRIEEAEKTASLFTR----EDVDPLSNLNDMQC-----MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             ---HCCCHHHHHHHHHhhcC----CCCCcccCHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence               35778888877788877    33233444443322     245667788889999999999999888887554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.99  E-value=1.9e-07  Score=98.24  Aligned_cols=167  Identities=20%  Similarity=0.180  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHH
Q 004984          379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWM  451 (721)
Q Consensus       379 ~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~a  451 (721)
                      +-++..+..++|..|...|-|+.|+..|...++.+  -..|...+-.+|..-.++.+|++.-.+...+.+.     .+..
T Consensus       103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf  182 (389)
T COG2956         103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF  182 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence            45667888899999999999999999998887753  3446777888888888899998888877777552     4566


Q ss_pred             HHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhc
Q 004984          452 YQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLAL  525 (721)
Q Consensus       452 y~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~l  525 (721)
                      |.+.+.-    ...+.|+..+.||++-||+.+.|=+-+|.+.+..|+|+.|+..+.++++-||+  +..+..+..+|..+
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            6665432    23377888888999999999999999999999999999999999999988887  45566677888999


Q ss_pred             CCHHHHHHHHHHHHhhCCCc
Q 004984          526 EDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~  545 (721)
                      |+.++.+..++++.+-.|+-
T Consensus       263 g~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         263 GKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             CCHHHHHHHHHHHHHccCCc
Confidence            99999999888888888774

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=1.8e-08  Score=100.56  Aligned_cols=196  Identities=15%  Similarity=0.086  Sum_probs=130.2

Q ss_pred             cHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 004984          448 LGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFF  522 (721)
Q Consensus       448 ~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-~~~~~R~~~~  522 (721)
                      .+.++++||.+    |...-|.-||++++.+.|+.+.+++++|.-+...|+|+.|.+.|+-.+++||.. .+..|||..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            34555666554    223667779999999999999999999999999999999999999999999985 4456799988


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC
Q 004984          523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP  602 (721)
Q Consensus       523 ~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~  602 (721)
                      .--|++.-|.+|+.+--.-||+++.   |.--..    +-+..-+..+|.                 ....+|+-.++-.
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLY----l~E~k~dP~~A~-----------------tnL~qR~~~~d~e  199 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPF---RSLWLY----LNEQKLDPKQAK-----------------TNLKQRAEKSDKE  199 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChH---HHHHHH----HHHhhCCHHHHH-----------------HHHHHHHHhccHh
Confidence            9999999999999999999999853   111111    111112222231                 2233444433322


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFE  672 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~-------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~-~~~~  672 (721)
                      . ..|+-.+.-   +|... -...++++.+-..+       -+|.++++|-.+...|+.++|...|.=||+-+ =+|.
T Consensus       200 ~-WG~~iV~~y---LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfV  272 (297)
T COG4785         200 Q-WGWNIVEFY---LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFV  272 (297)
T ss_pred             h-hhHHHHHHH---Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHH
Confidence            1 122222222   33322 11222333333333       36889999999999999999999999999863 3444

>PRK11906 transcriptional regulator; Provisional

Probab=98.99  E-value=2.2e-08  Score=110.69  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          462 DKRWEDLDKAT---ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       462 ~eAl~d~~kAi---eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      +.|+..|.+|+   ++||+++.||..++.+++..-                       ..|+.- ...+..+|++.-++|
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rA  330 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYV  330 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHH
Confidence            56666677777   777777777666666665330                       001100 123345666667777


Q ss_pred             HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984          539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg  618 (721)
                      +++||++..      +....+.+.....+++.|                  .+.++||++++|+.+.+|+..|.++..-|
T Consensus       331 veld~~Da~------a~~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G  386 (458)
T PRK11906        331 SDITTVDGK------ILAIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNE  386 (458)
T ss_pred             HhcCCCCHH------HHHHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence            777777743      333333333333344444                  66788888888888899999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 004984          619 CPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES  664 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~A  664 (721)
                      +.++|++.+++|++++|.-.-|-...-|+ .|.....++|++.|-+-
T Consensus       387 ~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        387 KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence            99999999999999999999999999999 99999999999988653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.95  E-value=1.3e-08  Score=108.89  Aligned_cols=247  Identities=14%  Similarity=0.089  Sum_probs=171.9

Q ss_pred             HhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHH
Q 004984          394 LLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE  466 (721)
Q Consensus       394 ~~~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~  466 (721)
                      +-.|.|..++..++. ....   .......+.|.+..+|++...+......-  .|.+. +......|    ...+.++.
T Consensus        12 fy~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   12 FYLGNYQQCINEASL-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             HCTT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred             HHhhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHHHH
Confidence            456788888876661 1222   23345678899999999988776654321  34432 22222222    23356666


Q ss_pred             HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          467 DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       467 d~~kAieLdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      .++..+.-..  .++....--|.++...|++++|+..+.+.    .+.++...+-.+++.++|.+.|..-++..-+.+.+
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD  163 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED  163 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            6655443322  34455566778888899999999888775    34666666777999999999999999999999988


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA  623 (721)
                      ..       ..+             .|.+|+.++..-   +.+. |.-+|+...+..|.++...+.++.+...+|+++||
T Consensus       164 ~~-------l~q-------------La~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA  220 (290)
T PF04733_consen  164 SI-------LTQ-------------LAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA  220 (290)
T ss_dssp             HH-------HHH-------------HHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred             HH-------HHH-------------HHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence            52       222             377888888663   3344 68899998888899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCH
Q 004984          624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR-KAEESIQMKRSF  671 (721)
Q Consensus       624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~-~ye~Ai~i~~~~  671 (721)
                      .+.+.+|++.+|++++.+.|+..+-+.+|+-.++.. ...+.-...|+-
T Consensus       221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999955554 444444467753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.95  E-value=1.1e-08  Score=100.67  Aligned_cols=65  Identities=8%  Similarity=0.063  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCH
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------------CEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~--------------~deAl~~ye~Ai~i~~~~  671 (721)
                      ++++|.++.++|++++|+..+++|++..|++..++.++|+++..+|+              +++|++.+++++.++|+.
T Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            34444444444444444444444444444444444444444444444              677777777777777775

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.94  E-value=1.3e-08  Score=116.82  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984          383 LLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g---~y~eA~~~f~~AL~~~~~~A--~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~  457 (721)
                      +..++.+|..+..++   .+..|+.+|++||+++|.++  +..++.++.....+.             + .     ..+.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~-~-----~~~~  399 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------P-L-----DEKQ  399 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------C-c-----cHHH
Confidence            344467777766543   47788888888888866554  444545443322111             0 0     0011


Q ss_pred             cCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          458 YCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                         ...+.....+|+++  +|..+.+|.-+|.+....|++++|...++||++++|+...|..+|.++...|++++|+..|
T Consensus       400 ---l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        400 ---LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             ---HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence               14556666777775  8888899999999999999999999999999999999888888999999999999999999


Q ss_pred             HHHHhhCCCchhh
Q 004984          536 QAILTLSPDYRMF  548 (721)
Q Consensus       536 ~kal~L~P~~~~~  548 (721)
                      ++|+.++|.+..+
T Consensus       477 ~~A~~L~P~~pt~  489 (517)
T PRK10153        477 STAFNLRPGENTL  489 (517)
T ss_pred             HHHHhcCCCCchH
Confidence            9999999998543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.93  E-value=1.7e-08  Score=98.95  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          495 VEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      +..+.+.+.+.+..++.   ...++..|.++..+|++++|+..|++++.+.|+..                         
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------------------------   69 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------------------------   69 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence            44555555555544442   34456677778888888888888888888766531                         


Q ss_pred             HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--
Q 004984          572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--  649 (721)
Q Consensus       572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly--  649 (721)
                                                    ..+.+|+++|.++..+|++++|+..+++|++++|.+++.+.++|.+++  
T Consensus        70 ------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         70 ------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             ------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence                                          112367888888899999999999999999999998888888888888  


Q ss_pred             -----hcCCHH-------HHHHHHHHHHhcCCC
Q 004984          650 -----DTSHCE-------EGLRKAEESIQMKRS  670 (721)
Q Consensus       650 -----~~G~~d-------eAl~~ye~Ai~i~~~  670 (721)
                           .+|+++       +|+..|++++..+|.
T Consensus       120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence                 777766       445555556666664

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.93  E-value=1.3e-08  Score=109.25  Aligned_cols=62  Identities=13%  Similarity=-0.037  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      ..+.+|+++.-+..++.|+...++=+.+..      ....+.|.+|..+-.+|..++|+-..++++.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            467889999999999999998888666654      35668899999999999999999999988875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.92  E-value=2.4e-08  Score=90.37  Aligned_cols=66  Identities=14%  Similarity=0.034  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      ..++.+|..+.+.|++++|+..|++++..+|+    +..++.+|.++...|++++|+..|++++..+|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            45566666666666666666666666666553    2344555666666666666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.92  E-value=3.3e-09  Score=116.98  Aligned_cols=101  Identities=15%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHH
Q 004984          598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEA  673 (721)
Q Consensus       598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea---~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~~~a  673 (721)
                      +.+|+++++|+|+|.+|..+|++++|+..|++|++++|+++++   ++|+|.+|..+|++++|++.+++||++ +|.|. 
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~-  147 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS-  147 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence            4689999999999999999999999999999999999999976   999999999999999999999999998 55443 


Q ss_pred             HHHHHHHhhccCCCCC-chhhHHHHHHHhhcC
Q 004984          674 FFLKAYALADSSQDSS-CSSTVVSLLEDALKC  704 (721)
Q Consensus       674 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  704 (721)
                           ++..|..+||= .....-+|+|++-++
T Consensus       148 -----~i~~DpdL~plR~~pef~eLlee~rk~  174 (453)
T PLN03098        148 -----TILNDPDLAPFRASPEFKELQEEARKG  174 (453)
T ss_pred             -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence                 45677776543 233455566666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.92  E-value=1.3e-08  Score=121.49  Aligned_cols=155  Identities=7%  Similarity=-0.087  Sum_probs=135.9

Q ss_pred             HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984          471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE  549 (721)
Q Consensus       471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~  549 (721)
                      +..-+|++..++..+..++...|++++|+...+.+++..|+ ...++..|.++...+++++|...  .++.+-|.+    
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~----   96 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN----   96 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence            44568999999999999999999999999999999999997 77788899999999998877776  666665554    


Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984          550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL  629 (721)
Q Consensus       550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~  629 (721)
                                                         .+...+..+.+.+.-.|.+-.+++.+|.++.++|+.++|.+.|++
T Consensus        97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer  141 (906)
T PRK14720         97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER  141 (906)
T ss_pred             -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                                               122235667777777899999999999999999999999999999


Q ss_pred             HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      +++++|+|+.+++|+|-.|-.. ++++|...|.+|+..
T Consensus       142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            9999999999999999999999 999999999999986

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.92  E-value=2.1e-08  Score=90.75  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV  592 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~  592 (721)
                      +.++..|..+...|++++|+..|++++..+|++                                               
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------------------   35 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-----------------------------------------------   35 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------------------------
Confidence            456778888889999999999999998888875                                               


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                              |..+.+++.+|.++.+.|++++|+..+++++...|++   +++++.+|+++..+|++++|+..++++++..|
T Consensus        36 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        36 --------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             --------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence                    1224567889999999999999999999999999886   67899999999999999999999999999999


Q ss_pred             CHH
Q 004984          670 SFE  672 (721)
Q Consensus       670 ~~~  672 (721)
                      +..
T Consensus       108 ~~~  110 (119)
T TIGR02795       108 GSS  110 (119)
T ss_pred             CCh
Confidence            876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.90  E-value=2.1e-08  Score=92.77  Aligned_cols=87  Identities=24%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHhcCCHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L--ECLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~--~~~~~R~~~~~~lgd~eeAl~  533 (721)
                      ++.++|++-|.+||.+.|..+.+|+||+.++.-+|+.++|+.+++||+++.-+   .  ..+.-||.+|..+|+.+.|.+
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence            44499999999999999999999999999999999999999999999999643   2  334569999999999999999


Q ss_pred             HHHHHHhhCCCc
Q 004984          534 DVQAILTLSPDY  545 (721)
Q Consensus       534 d~~kal~L~P~~  545 (721)
                      ||++|.+|...+
T Consensus       137 DFe~AA~LGS~F  148 (175)
T KOG4555|consen  137 DFEAAAQLGSKF  148 (175)
T ss_pred             hHHHHHHhCCHH
Confidence            999999999887

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.88  E-value=2e-09  Score=113.19  Aligned_cols=186  Identities=12%  Similarity=-0.027  Sum_probs=144.3

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cC
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC  459 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~  459 (721)
                      .-..|+-|+.+|.|+|||.+|.++|...|  +-.+.++|.+|+++..+..|..+.+.||.++..+-.+|..|+.    +|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999854  3346789999999999999999999999999988899988863    45


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHH-----------------------------------HHHHHHHHhcCCHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPY-----------------------------------MYRASSLMTKQNVEAALAEINR  504 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay-----------------------------------~~rg~~l~~lg~~~eAl~~~~k  504 (721)
                      ...||..|++.+++|.|+.-+.-                                   ..+|+.+...|.++-|+.++-+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~  259 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS  259 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence            66999999999999999974322                                   2344444555555555555555


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       505 AL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      -++-+-+...+-.-+..+.+..++++|+.+..+++-++|.++. +.|++-+....+.+.+....++.+
T Consensus       260 ~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~  327 (536)
T KOG4648|consen  260 PRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA  327 (536)
T ss_pred             cccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence            5543332221212246788999999999999999999999854 677888888888887777777666

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.87  E-value=3.6e-08  Score=97.05  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      +|..+.+|+++|.++...|++++|+..|++++++.|+    ...++++|.++..+|++++|+..|+++++++|++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP  106 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            3455678899999999999999999999999998775    24577889999999999999999999999999874

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.87  E-value=5.8e-09  Score=85.55  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999863

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.86  E-value=1.3e-06  Score=83.36  Aligned_cols=238  Identities=25%  Similarity=0.176  Sum_probs=165.9

Q ss_pred             ccchHHHHHHHHHHHhccc----hhhHhhHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHhhc----CChhHHH
Q 004984          396 RKEYDEAEHLFEAAVNAGH----IYSIAGLARLGYIKGHKLWAYEKLNSVIS--SVTPLGWMYQERSLY----CEGDKRW  465 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~~~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--~~~~~~~ay~~rg~~----~~~~eAl  465 (721)
                      .+.+..+...+..++...+    .......+..+...|++..+...+...+.  ..+..+..+...+.+    +.+.+++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            4566666667776666643    24555666777777777777777777776  566666666665542    2336788


Q ss_pred             HHHHHHHhcCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          466 EDLDKATALDPTLSYPYMYRAS-SLMTKQNVEAALAEINRILGFKL---A-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       466 ~d~~kAieLdP~~~~ay~~rg~-~l~~lg~~~eAl~~~~kAL~l~P---~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ..+.+++..+|+........+. ++...|++++|+..|.+++..+|   . ......++..+...+++++|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            8888888888887666666676 88889999999999999888776   2 23344455667888899999999999999


Q ss_pred             hCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          541 LSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       541 L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      ..|+. ..      .....+........++.                  +...+.+++...|.....+...+..+...|.
T Consensus       196 ~~~~~~~~------~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (291)
T COG0457         196 LNPDDDAE------ALLNLGLLYLKLGKYEE------------------ALEYYEKALELDPDNAEALYNLALLLLELGR  251 (291)
T ss_pred             hCcccchH------HHHHhhHHHHHcccHHH------------------HHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence            88883 11      11111111111112222                  3677888888888877788888888888888


Q ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      .++|...+++++..+|.    +...|+.+...  .+++...+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~  289 (291)
T COG0457         252 YEEALEALEKALELDPD----LYNLGLALLLL--LAEALELLEK  289 (291)
T ss_pred             HHHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHhh
Confidence            99999999999999998    66677776666  5555544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.85  E-value=2.8e-07  Score=105.65  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      +.+|-.+..+|++++|+..+++||++.|+.+|.|...|-+|-..|++++|....+.|-.+++.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            444555555555555555555555555555555555555555555555555555555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=5e-07  Score=99.72  Aligned_cols=132  Identities=20%  Similarity=0.154  Sum_probs=90.5

Q ss_pred             cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984          413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS  488 (721)
Q Consensus       413 ~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~  488 (721)
                      ....+.++.+..++..|++++|...++..|...|++.|.+.-++.+    ++..+|++-+.+|+.++|+..-.+.++|.+
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            3445667777777878888888777777777777777776666643    455777777777777777777777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      |+..|++++|+..+++.+.-+|+ +..|..++.+|..+|+-.+|...+-....++-+
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR  440 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence            77777777777777777777774 666666677777777666666554444444333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=5e-07  Score=92.42  Aligned_cols=190  Identities=16%  Similarity=0.107  Sum_probs=154.3

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      .+.-.+.|+-...|-....+.+..|+..-|...+++.-.--|+ +.-...-|..+..+|.+++|+..|+..++-||.+..
T Consensus        42 ~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v  121 (289)
T KOG3060|consen   42 SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV  121 (289)
T ss_pred             hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence            3333577777788888889999999999999999996654486 565566788999999999999999999999999855


Q ss_pred             hhhhHHHH-HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984          548 FEGRVAAS-QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS  626 (721)
Q Consensus       548 ~~~~~~a~-~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~  626 (721)
                      .+-|.-+. ..+|                         ....++.-++.=|+..|++.++|...++++.-+|.++.|.=+
T Consensus       122 ~~KRKlAilka~G-------------------------K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  122 IRKRKLAILKAQG-------------------------KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             HHHHHHHHHHHcC-------------------------CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            44333221 1111                         111236677777999999999999999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CHHHHH---HHHHHhhc
Q 004984          627 LQLARQHAASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKR-SFEAFF---LKAYALAD  683 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~---~deAl~~ye~Ai~i~~-~~~a~~---~~~~~~~~  683 (721)
                      |+..+=++|.++--+--+|-++|.+|-   ++-|...|++|+++.| ++-+.|   +.|.+++-
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999986   5568899999999999 777664   78888873

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.82  E-value=3.8e-08  Score=105.72  Aligned_cols=274  Identities=14%  Similarity=0.060  Sum_probs=170.4

Q ss_pred             HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHH
Q 004984          366 VCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYE  436 (721)
Q Consensus       366 ~~LLe~Lv~~a~~~lq~~-la~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~~~~A~~~lg~~~~~~G~~~~A~~  436 (721)
                      +.+|+.++....+.++-. -.|.++|++|+-.++|++|.++..-=|.+        +.+-+.-++|+..-.+|.+++|+-
T Consensus        37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~  116 (639)
T KOG1130|consen   37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT  116 (639)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence            456666666555555543 34568999999999999999876532221        445566789999999999999976


Q ss_pred             HHHHHHhc-------------CCCcHHHHHHHhhcC----------ChhHHHHHHHHHHhcCCCC-------------hH
Q 004984          437 KLNSVISS-------------VTPLGWMYQERSLYC----------EGDKRWEDLDKATALDPTL-------------SY  480 (721)
Q Consensus       437 ~~~~aI~~-------------~~~~~~ay~~rg~~~----------~~~eAl~d~~kAieLdP~~-------------~~  480 (721)
                      +..+-+.+             .-|+|.+|..+|+..          ..+++..+|+.|++.--.+             ..
T Consensus       117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR  196 (639)
T KOG1130|consen  117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR  196 (639)
T ss_pred             HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence            65554432             225566666665431          1255555555555432222             46


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhh
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGR  551 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~--~~~~~~~  551 (721)
                      +|.|+|+.|+-+|+|+.||..-..=|++.-.+       .++.+.|.+++-+|+++.|++.|.+.+.|.-.  +...  .
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E  274 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E  274 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H
Confidence            78899999999999999999888877775432       23455678899999999999999988765422  1110  0


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                      ..-.+-++......+.+++|-.+-+..-            -+-|-|+---+...++..+|+++-.+|.++.|+-...+++
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHL------------aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHL------------AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            1111222333333344444411100000            1223344445667888899999999999999988887777


Q ss_pred             HhCC----C--ChhHHHHHHHHHHhcCC
Q 004984          632 QHAA----S--DHERLVYEGWILYDTSH  653 (721)
Q Consensus       632 ~l~P----~--~~ea~~~~G~~Ly~~G~  653 (721)
                      ++.-    .  .--+..|+...-..+|.
T Consensus       343 ~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  343 RSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            6532    2  22355666665555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.81  E-value=8.9e-08  Score=93.80  Aligned_cols=86  Identities=12%  Similarity=-0.029  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~--~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                      ..+...+.+.+..++..  +..|++.|.++...|++++|+..|++|+.+.|+    +..+.+.|.++..+|++++|+..|
T Consensus        16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44555565555677766  677799999999999999999999999998765    236788999999999999999999


Q ss_pred             HHHHhhCCCchh
Q 004984          536 QAILTLSPDYRM  547 (721)
Q Consensus       536 ~kal~L~P~~~~  547 (721)
                      +++++++|.+..
T Consensus        96 ~~Al~~~~~~~~  107 (168)
T CHL00033         96 FQALERNPFLPQ  107 (168)
T ss_pred             HHHHHhCcCcHH
Confidence            999999999844

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=5e-08  Score=81.52  Aligned_cols=93  Identities=25%  Similarity=0.305  Sum_probs=75.9

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |..+...|++   ++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|. ...+...+.++...|+
T Consensus         7 a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           7 GNLYYKLGDY---DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHhcH---HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            3344444444   77777778888888888888899999999999999999999999998886 5667778888999999


Q ss_pred             HHHHHHHHHHHHhhCCC
Q 004984          528 YQAALCDVQAILTLSPD  544 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~  544 (721)
                      +++|...++++++++|+
T Consensus        84 ~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          84 YEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHccCCC
Confidence            99999999999988874

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=4.9e-08  Score=96.46  Aligned_cols=100  Identities=25%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE  501 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~  501 (721)
                      |+-++..|++.+|...|..||+..|....  -.|                       +-.|.|||.+++.+++.+.||.+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~d  156 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIED  156 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHHH
Confidence            55566777777777666666666665443  111                       23689999999999999999999


Q ss_pred             HHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          502 INRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       502 ~~kAL~l~P~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      ..|||+|+|.+ .++.-|+.+|.++..|++|+.||.++++++|...
T Consensus       157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            99999999985 5556678999999999999999999999999973

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=6.2e-07  Score=100.54  Aligned_cols=217  Identities=17%  Similarity=0.082  Sum_probs=140.1

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA  500 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~  500 (721)
                      +...|++++|....++.+..+|+...++.-.    -+..++++|+...++=..+.-.+... +.+|.+.+++++.++|+.
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk  100 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALK  100 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHH
Confidence            3344555555555555555555544444322    01112255542222211111122222 578889999999999999


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984          501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD  579 (721)
Q Consensus       501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~  579 (721)
                      +++   .+++. ....++++.++.++|+|++|+.-|+..++=+-+......|.........+        .+        
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--------~~--------  161 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--------QV--------  161 (652)
T ss_pred             HHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh--------hH--------
Confidence            999   56775 45778999999999999999999999988776654322222211111100        00        


Q ss_pred             ccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCC--------hhHHHH
Q 004984          580 RWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASD--------HERLVY  643 (721)
Q Consensus       580 ~~~~~dd~~al~~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~--------~ea~~~  643 (721)
                                  ...+..-.-|. +-+.+||.|-++.-.|.+.+|++.+++|+++       .-.+        .-..+.
T Consensus       162 ------------~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ  229 (652)
T KOG2376|consen  162 ------------QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ  229 (652)
T ss_pred             ------------HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence                        01222223333 4568999999999999999999999999432       1111        225678


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          644 EGWILYDTSHCEEGLRKAEESIQMKRSFEA  673 (721)
Q Consensus       644 ~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a  673 (721)
                      ++.+|..+|+-+||.+.|..-|+.+|-.+.
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence            899999999999999999999999887663

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.77  E-value=6.4e-08  Score=103.14  Aligned_cols=206  Identities=17%  Similarity=0.096  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc----cc----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------c
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----GH----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------L  448 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~  448 (721)
                      ...|..-|..+...|++++|..+|.+|.+.    +.    ..++...+.+ ++.+++.+|+..|.+|+.++..      -
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            445566789999999999999999998766    11    2233444444 4566999999999999997432      2


Q ss_pred             HHHHHHHhhc-----CChhHHHHHHHHHHhcCCC--C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 004984          449 GWMYQERSLY-----CEGDKRWEDLDKATALDPT--L----SYPYMYRASSLMTKQNVEAALAEINRILGFKLA------  511 (721)
Q Consensus       449 ~~ay~~rg~~-----~~~~eAl~d~~kAieLdP~--~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~------  511 (721)
                      +..+.+.|.+     ++.++|++.|.+|+++--.  .    ...+.+.|.++..+|+|++|+..|++++....+      
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            3444444432     4559999999999998322  2    456788999999999999999999999975321      


Q ss_pred             -HHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-
Q 004984          512 -LECLE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-  588 (721)
Q Consensus       512 -~~~~~-~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-  588 (721)
                       ...++ ..+.+++.+||...|...+++....+|.+....-...+..+...+                 +. .+.+.+. 
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-----------------~~-~D~e~f~~  255 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-----------------EE-GDVEAFTE  255 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-----------------HT-T-CCCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-----------------Hh-CCHHHHHH
Confidence             11233 345689999999999999999999999985422112222222211                 11 1112222 


Q ss_pred             hHHHHHHHHHhCCCChhHH
Q 004984          589 SLSVIYQMLESDAPKGVLY  607 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~  607 (721)
                      ++..|++.-.+|||....+
T Consensus       256 av~~~d~~~~ld~w~~~~l  274 (282)
T PF14938_consen  256 AVAEYDSISRLDNWKTKML  274 (282)
T ss_dssp             HCHHHTTSS---HHHHHHH
T ss_pred             HHHHHcccCccHHHHHHHH
Confidence            4667788888888766544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=2.9e-07  Score=105.21  Aligned_cols=177  Identities=13%  Similarity=0.086  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHhh--c-
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSL--Y-  458 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-~~~ay~~rg~--~-  458 (721)
                      ...+.+.-.+|...|+-..|.....+-|+. +.++     +.|..+||...=-..|++|.++... ++.|....|.  + 
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~-----~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~  497 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDP-----RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILS  497 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc-----hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccccc
Confidence            344556677788888889998888787874 3332     3467778877777888888887442 3443322221  1 


Q ss_pred             -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                       ..+.++..+++..++++|-....|+++|.+..++++++.|..+|.+.+.++|+ ..+|+|...+|.++|+..+|-+.+.
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~  577 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK  577 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence             23399999999999999999999999999999999999999999999999997 8999999999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      .|++-+=++      -....+-+.+...+..|++|
T Consensus       578 EAlKcn~~~------w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  578 EALKCNYQH------WQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             HHhhcCCCC------CeeeechhhhhhhcccHHHH
Confidence            999998444      12333344555566677777

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.4e-07  Score=102.38  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984          419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA  498 (721)
Q Consensus       419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA  498 (721)
                      -..|+.+++.|++..|...|.+|+..-......=.+-      .....    ++.     ...+.|++.++..+++|.+|
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee------~~~~~----~~k-----~~~~lNlA~c~lKl~~~~~A  276 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE------QKKAE----ALK-----LACHLNLAACYLKLKEYKEA  276 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH------HHHHH----HHH-----HHHhhHHHHHHHhhhhHHHH
Confidence            3468899999999999999999998643100000000      11111    111     24789999999999999999


Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          499 LAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      +...+++|+++|+ ..+++-||.++..+|+|+.|+.||++|++++|+|.+
T Consensus       277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka  326 (397)
T KOG0543|consen  277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA  326 (397)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence            9999999999995 788999999999999999999999999999999943

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.74  E-value=1.1e-06  Score=97.18  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ..-+.+++.++|..+.++.++|.+|.++|++++|++.+++.+.-+|++++.+.+++..+-.+|+..+|...+-+...+.-
T Consensus       360 ~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence            34455555555556677888888888888888888888888888888888888888888888888888888888777766


Q ss_pred             CHH
Q 004984          670 SFE  672 (721)
Q Consensus       670 ~~~  672 (721)
                      ..+
T Consensus       440 ~~~  442 (484)
T COG4783         440 RLE  442 (484)
T ss_pred             CHH
Confidence            665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.74  E-value=2.4e-05  Score=84.76  Aligned_cols=261  Identities=17%  Similarity=0.128  Sum_probs=177.1

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHhhcCChhHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcC
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQ  493 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~-------~ay~~rg~~~~~~eAl~d~~kAieLdP~~-~~ay~~rg~~l~~lg  493 (721)
                      |.....-|++..|.+...++-+-.+.-.       .|-.+||++   +.|=..+.+|.++.|+. ...+..|+-++...|
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~---~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE---DRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH---HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            3445667999999999998777655433       333444444   88888999999994444 457888999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC-chhhhhhHHHHHHHHHHHHhhhhh
Q 004984          494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS---PD-YRMFEGRVAASQLHMLVREHIDNW  568 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~---P~-~~~~~~~~~a~~~~~~l~~~~~~~  568 (721)
                      +++.|.+..+.+++..|. +..+.....+|...|+|.+...-..+.-+-.   +. +..+.. .+   ..+.+++....-
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a---~~glL~q~~~~~  243 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QA---WEGLLQQARDDN  243 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HH---HHHHHHHHhccc
Confidence            999999999999999996 7767777789999999999998877776633   22 111111 11   111111111111


Q ss_pred             hHH---HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984          569 TIA---DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA  630 (721)
Q Consensus       569 ~~A---~~~~~l~~~~~~--------------~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A  630 (721)
                      ...   ++|.++-.+...              .++.. |...+.++|...= ++.++-.  .--.+.++++.=+...++.
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~L~~~--~~~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPRLCRL--IPRLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-ChhHHHH--HhhcCCCCchHHHHHHHHH
Confidence            111   123322222222              13332 4445555555432 2222211  1223456666677777888


Q ss_pred             HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhh
Q 004984          631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST  693 (721)
Q Consensus       631 l~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~  693 (721)
                      +...|+++..+.++|..+++.+.+.+|=..+|.|++.+||-+.|...|++++-.+ ||+-+.-
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g-~~~~A~~  382 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG-EPEEAEQ  382 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC-ChHHHHH
Confidence            8889999999999999999999999999999999999999999999999987554 4444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.72  E-value=1.6e-06  Score=90.48  Aligned_cols=159  Identities=13%  Similarity=0.106  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHhcCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCC-------
Q 004984          462 DKRWEDLDKATALDPTLSYPY---MYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALED-------  527 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay---~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd-------  527 (721)
                      ++|+..|++++...|+...+.   ..+|.++..++++++|+..|++.|++.|+    +.+++.+|.++..+++       
T Consensus        49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~  128 (243)
T PRK10866         49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFF  128 (243)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhcc
Confidence            344444444555555544333   78899999999999999999999999885    3456778877655541       


Q ss_pred             -----------HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          528 -----------YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       528 -----------~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                                 ..+|+..|++.++.-|+....   ..+......++..+..                             
T Consensus       129 ~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---~~A~~rl~~l~~~la~-----------------------------  176 (243)
T PRK10866        129 GVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---TDATKRLVFLKDRLAK-----------------------------  176 (243)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHHCcCChhH---HHHHHHHHHHHHHHHH-----------------------------
Confidence                       357889999999999986321   1122221111111111                             


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                               --+..|..+.+.|.+..|+.-++..++.-|+   ..+|++.++.++..+|.-++|-+..
T Consensus       177 ---------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~  235 (243)
T PRK10866        177 ---------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA  235 (243)
T ss_pred             ---------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence                     1234566778889999999999999999886   5688999999999999999987543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=1.3e-06  Score=89.35  Aligned_cols=210  Identities=16%  Similarity=0.081  Sum_probs=143.7

Q ss_pred             HHHhhhcCCCCchhHHHHHHHHHH-hhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH
Q 004984          351 LSEVAMNLDPRSDKTVCFLERLLE-SAETDR--QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI  427 (721)
Q Consensus       351 l~wV~~d~~~rs~~~~~LLe~Lv~-~a~~~l--q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~  427 (721)
                      -.|-+. ...+++..+++.+.... ....-+  .....+.+.-.+.+..|+.+-|+.++++.-..-|..-     ||...
T Consensus        18 ~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~l   91 (289)
T KOG3060|consen   18 RKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKL   91 (289)
T ss_pred             HHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHH
Confidence            366433 34467777777766432 211101  1134456677778888888889888887433322211     11111


Q ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG  507 (721)
Q Consensus       428 ~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~  507 (721)
                      .|-                    -+...|.+   ++|++.|+..++-||++.-+|...-.++..+|+.-+||..++.-++
T Consensus        92 kam--------------------~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~  148 (289)
T KOG3060|consen   92 KAM--------------------LLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD  148 (289)
T ss_pred             HHH--------------------HHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            111                    12222334   8888888999999999999999988899999999999999999998


Q ss_pred             cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 004984          508 FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVD  585 (721)
Q Consensus       508 l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d  585 (721)
                      .=| |.++|...+-+|...|+|+.|.-+|+..+-++|-+.++++|.+ ..+-.+.    ++..+.|              
T Consensus       149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~a--------------  210 (289)
T KOG3060|consen  149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELA--------------  210 (289)
T ss_pred             HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHH--------------
Confidence            777 5899999999999999999999999999999999988776655 2222221    2333333              


Q ss_pred             ccchHHHHHHHHHhCCCChhHHHHHH
Q 004984          586 DIGSLSVIYQMLESDAPKGVLYFRQS  611 (721)
Q Consensus       586 d~~al~~~~qaL~l~P~~~~~~~~~g  611 (721)
                          ...|.|+|.++|.+.+++|..-
T Consensus       211 ----rkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  211 ----RKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             ----HHHHHHHHHhChHhHHHHHHHH
Confidence                6689999999998888776543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.69  E-value=2e-07  Score=77.87  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      |+..++++++..|.+..+++.+|.++...|++++|+..++++++..|.+.+++..+|.++...|++++|...+++++.+.
T Consensus        19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q 004984          669 RS  670 (721)
Q Consensus       669 ~~  670 (721)
                      |+
T Consensus        99 ~~  100 (100)
T cd00189          99 PN  100 (100)
T ss_pred             CC
Confidence            74

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.69  E-value=4.4e-08  Score=108.22  Aligned_cols=73  Identities=19%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLALEDYQAALCDVQAILTL-SPDY  545 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~lgd~eeAl~d~~kal~L-~P~~  545 (721)
                      +-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+   .|+++|++|..+|++++|+.++++|+++ +|.+
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f  146 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF  146 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence            368999999999999999999999999999999999997 43   3889999999999999999999999998 4444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.68  E-value=8.8e-08  Score=78.49  Aligned_cols=63  Identities=22%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      +.+|.++++.|++++|+..|+++++.+|+ ++.++.+|.++..+|++++|+..|+++++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            35788888888888888888888888886 6777888888888888888888888888888876

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=1.4e-07  Score=93.19  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA-L-----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~-----~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      ...=|+-+..-|.|++|...|..||++-|. +     -++.+||.++++++.++.||.++.+||+|+|.|          
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty----------  167 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY----------  167 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----------
Confidence            455688888999999999999999999885 2     346789999999999999999999999999997          


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                                                            .+||.          +|+.++.++-.+++|+.+|.+.++++|
T Consensus       168 --------------------------------------~kAl~----------RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  168 --------------------------------------EKALE----------RRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             --------------------------------------HHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence                                                  22333          577788888888888888888888888


Q ss_pred             CChhHHH
Q 004984          636 SDHERLV  642 (721)
Q Consensus       636 ~~~ea~~  642 (721)
                      ...+|.-
T Consensus       200 s~~ear~  206 (271)
T KOG4234|consen  200 SRREARE  206 (271)
T ss_pred             chHHHHH
Confidence            8776643

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=1.4e-06  Score=87.40  Aligned_cols=186  Identities=15%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA  497 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e  497 (721)
                      |..|...|=..-|.-+|+++++++|+.+.++.-.|.|    +.++.|++.|+..++|||++-++..|||..+.--||++-
T Consensus        72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L  151 (297)
T COG4785          72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL  151 (297)
T ss_pred             cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence            3333344444444444444444444444444444432    333666777888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHh
Q 004984          498 ALAEINRILGFKLALECLELRFCFFLALEDYQAALCD-VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ  576 (721)
Q Consensus       498 Al~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d-~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~  576 (721)
                      |..+|.+--+-||+...-...-.+-...-|..+|... .+++-.++.++   .|-..+-..++.+..             
T Consensus       152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~---WG~~iV~~yLgkiS~-------------  215 (297)
T COG4785         152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQ---WGWNIVEFYLGKISE-------------  215 (297)
T ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhh---hhHHHHHHHHhhccH-------------
Confidence            9999999998898622111122233333445555444 34444454333   111111111111110             


Q ss_pred             hhhccccccccchHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          577 LYDRWSSVDDIGSLSVIYQMLESDAP-------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       577 l~~~~~~~dd~~al~~~~qaL~l~P~-------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                                   -+.+.++.+-.-+       -.++||.+|.-...+|...+|...|..|+.-+--
T Consensus       216 -------------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy  269 (297)
T COG4785         216 -------------ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY  269 (297)
T ss_pred             -------------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence                         0112222222211       2467999999999999999999999999987643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5e-07  Score=98.07  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG  461 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~  461 (721)
                      +......|..+++.|+|..|...|++|+.. ++....           +.++.-..-.--+..+.|++..|.....|   
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---  273 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAEALKLACHLNLAACYLKLKEY---  273 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHHHHHHHHhhHHHHHHHhhhhH---
Confidence            444567899999999999999999999886 322110           00111111111234566778888888777   


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHH-HHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAA-LCDVQAIL  539 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~eeA-l~d~~kal  539 (721)
                      .+|+...+++++++|+|.-|.+.||.++..+|.|+.|+.+|+||++++|+..+..+ ...+..+..++++. ..-|.+.+
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999997544333 34444444455444 55566666


Q ss_pred             hhCC
Q 004984          540 TLSP  543 (721)
Q Consensus       540 ~L~P  543 (721)
                      ..-+
T Consensus       354 ~k~~  357 (397)
T KOG0543|consen  354 AKLA  357 (397)
T ss_pred             hccc
Confidence            6444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.61  E-value=1.6e-06  Score=92.46  Aligned_cols=211  Identities=17%  Similarity=0.119  Sum_probs=140.5

Q ss_pred             cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCC
Q 004984          397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP  476 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP  476 (721)
                      .+|++|...|++|            |+.+...|++.+|.+.|.++...+-..+..          .+|            
T Consensus        29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~----------~~A------------   74 (282)
T PF14938_consen   29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK----------FEA------------   74 (282)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H----------HHH------------
T ss_pred             CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH----------HHH------------
Confidence            3788888888876            445777788888888887776654211111          122            


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhh
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFK-----LA--LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-----P~--~~~~~~R~~~~~~l-gd~eeAl~d~~kal~L~P~~~~~  548 (721)
                        +.+|..-|.++.+. ++++|+..|++|+.+-     |.  ..++...|.+|... |++++|+..|++|+++--.... 
T Consensus        75 --a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-  150 (282)
T PF14938_consen   75 --AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-  150 (282)
T ss_dssp             --HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred             --HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence              23444555566555 8888888888888761     21  23345567788888 9999999999999986322100 


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ  628 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~  628 (721)
                                         ...+                                ...+.+.|.++.++|++++|+..|+
T Consensus       151 -------------------~~~a--------------------------------~~~~~~~A~l~~~l~~y~~A~~~~e  179 (282)
T PF14938_consen  151 -------------------PHSA--------------------------------AECLLKAADLYARLGRYEEAIEIYE  179 (282)
T ss_dssp             -------------------HHHH--------------------------------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             -------------------hhhH--------------------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                               0000                                1234567788999999999999999


Q ss_pred             HHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHhhccCCCCCchhhHHH
Q 004984          629 LARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE----AFFLKAYALADSSQDSSCSSTVVS  696 (721)
Q Consensus       629 ~Al~l~P~~-------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~  696 (721)
                      +.....-++       .+.+..-+.|.+.+|+.-.|...+++...++|+|.    .-|+....-|=.+-|++.-+.+|.
T Consensus       180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~  258 (282)
T PF14938_consen  180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA  258 (282)
T ss_dssp             HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            998754322       23456788999999999999999999999999664    667777776666667776665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.58  E-value=1.4e-06  Score=83.46  Aligned_cols=111  Identities=21%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             hCCHHHHHHHHHHHHhcCCCc---HHHHHHHhh----cCChhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHH
Q 004984          428 KGHKLWAYEKLNSVISSVTPL---GWMYQERSL----YCEGDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEA  497 (721)
Q Consensus       428 ~G~~~~A~~~~~~aI~~~~~~---~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~---~~ay~~rg~~l~~lg~~~e  497 (721)
                      .|+...+...+.+.+..+|+.   ..+.+..+.    -++.++|+..|+++++-.|+.   ..+..++|.+++.+|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            344444444445555555443   122222221    133366677777777766555   4578889999999999999


Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          498 ALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       498 Al~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      |+..++.+- -.+ .+..+..+|.++..+|++++|+..|++||
T Consensus       104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999997733 222 35566789999999999999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.57  E-value=1.3e-07  Score=81.77  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      |+..++++++.+|.  +...++++|.++.++|++++|+..+++ ..++|.+.+.++..|.+++.+|+++||+..+++|
T Consensus         8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen    8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            48899999999995  577899999999999999999999999 9999999999999999999999999999999986

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.56  E-value=1.6e-07  Score=81.29  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             CChhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~--~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                      +.+++|+..|+++++.+|+  +...++++|.++.++|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3449999999999999996  466788899999999999999999999 888886 577788899999999999999999


Q ss_pred             HHH
Q 004984          536 QAI  538 (721)
Q Consensus       536 ~ka  538 (721)
                      +++
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.54  E-value=6.2e-06  Score=86.14  Aligned_cols=152  Identities=14%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE  454 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~~  454 (721)
                      ....|..|......|+|++|+..|++++...|     ..+...+|.++++.|++.+|+..+++.|+.+|+   .+.+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            45577888899999999999999999988843     224577899999999999999999999999875   5778888


Q ss_pred             HhhcC-------------------C---hhHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHhcCCH
Q 004984          455 RSLYC-------------------E---GDKRWEDLDKATALDPTLSY-----------------PYMYRASSLMTKQNV  495 (721)
Q Consensus       455 rg~~~-------------------~---~~eAl~d~~kAieLdP~~~~-----------------ay~~rg~~l~~lg~~  495 (721)
                      +|...                   +   ..+|+..|++.|+.-|+...                 --+..|.-|.+.|++
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y  191 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY  191 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            87531                   0   15788889999999998742                 223455556666777


Q ss_pred             HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          496 EAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                      ..|+.-++.+|+--|+    .++++....+|..+|..++|...
T Consensus       192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~  234 (243)
T PRK10866        192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV  234 (243)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence            7777777777766664    34455556666677766666543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.51  E-value=1.6e-06  Score=91.48  Aligned_cols=107  Identities=8%  Similarity=-0.028  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984          479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA  553 (721)
Q Consensus       479 ~~ay~~rg~~l-~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~  553 (721)
                      ...++..|..+ +..|+|++|+..|++.|+..|+    +..++.+|.+|...|++++|+..|+++++..|+.        
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--------  213 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--------  213 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence            35555555554 5567777777777777777775    2456667777777777777777777777777775        


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984          554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH  633 (721)
Q Consensus       554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l  633 (721)
                                                                     |..+++++.+|.++..+|+.++|...|+++++.
T Consensus       214 -----------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        214 -----------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             -----------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                                                           344566666777777777777777777777777


Q ss_pred             CCCChhH
Q 004984          634 AASDHER  640 (721)
Q Consensus       634 ~P~~~ea  640 (721)
                      .|++..+
T Consensus       247 yP~s~~a  253 (263)
T PRK10803        247 YPGTDGA  253 (263)
T ss_pred             CcCCHHH
Confidence            7776654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.50  E-value=1.5e-06  Score=80.93  Aligned_cols=99  Identities=15%  Similarity=0.047  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV  592 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~  592 (721)
                      ..++.+++++..+|+.++|+..|+++++..++..                                              
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~----------------------------------------------   35 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA----------------------------------------------   35 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence            3467788888888888888888888888765531                                              


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                               .-..+++.+|.++..+|++++|++.++++++-.|+   +......++.+|+..|+.+||++.+-+++.
T Consensus        36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                     01234566777888888888888888888888777   777778888888888888888887777765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.47  E-value=1.4e-05  Score=81.02  Aligned_cols=174  Identities=11%  Similarity=0.031  Sum_probs=110.5

Q ss_pred             hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984          416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV  495 (721)
Q Consensus       416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~  495 (721)
                      .+++..|...+..|++.+|+..|++.+..+|+...                           -..+...+|.++...|++
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---------------------------a~~A~l~la~a~y~~~~y   58 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---------------------------APQAQLMLAYAYYKQGDY   58 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---------------------------HHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---------------------------HHHHHHHHHHHHHHcCCH
Confidence            34455555666666666666666655555553221                           134567788888888888


Q ss_pred             HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984          496 EAALAEINRILGFKLA----LECLELRFCFFLAL-----------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML  560 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~l-----------gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~  560 (721)
                      ++|+..|++-|...|+    +.+++.+|.++..+           +...+|+..|+..++.-|+....   ..+......
T Consensus        59 ~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~---~~A~~~l~~  135 (203)
T PF13525_consen   59 EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA---EEAKKRLAE  135 (203)
T ss_dssp             HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH---HHHHHHHHH
Confidence            8888888888888885    34566677665443           33458899999999999986321   111121111


Q ss_pred             HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--
Q 004984          561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH--  638 (721)
Q Consensus       561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--  638 (721)
                      +                                +..|+      .--+..|..+.+.|.+.+|+.-++.+++.-|+..  
T Consensus       136 l--------------------------------~~~la------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~  177 (203)
T PF13525_consen  136 L--------------------------------RNRLA------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA  177 (203)
T ss_dssp             H--------------------------------HHHHH------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred             H--------------------------------HHHHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence            1                                11111      1123467788889999999999999999999854  


Q ss_pred             -hHHHHHHHHHHhcCCHHHH
Q 004984          639 -ERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       639 -ea~~~~G~~Ly~~G~~deA  657 (721)
                       +|+..++..++.+|..+.|
T Consensus       178 ~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  178 EEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHhCChHHH
Confidence             6788889999999998844

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.47  E-value=1.4e-05  Score=81.10  Aligned_cols=148  Identities=19%  Similarity=0.121  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQ  453 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~  453 (721)
                      ...++|..|...+..|+|.+|+..|++.+..-|     ..|...+|.+++..|++..|+..+++.|..+|+   .+.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            356788999999999999999999999988732     446788999999999999999999999999886   456777


Q ss_pred             HHhhcC---------------ChhHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 004984          454 ERSLYC---------------EGDKRWEDLDKATALDPTLSYP-----------------YMYRASSLMTKQNVEAALAE  501 (721)
Q Consensus       454 ~rg~~~---------------~~~eAl~d~~kAieLdP~~~~a-----------------y~~rg~~l~~lg~~~eAl~~  501 (721)
                      .+|...               ...+|+..|++.|+.-|+...+                 -+..|..|.+.|++..|+.-
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            766420               1157788888888888887533                 23456667777777777777


Q ss_pred             HHHHHhcCCCH----HHHHHHHHHHHhcCCHH
Q 004984          502 INRILGFKLAL----ECLELRFCFFLALEDYQ  529 (721)
Q Consensus       502 ~~kAL~l~P~~----~~~~~R~~~~~~lgd~e  529 (721)
                      ++.+|+--|+.    +++......+.++|..+
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            77777766652    33344555677777666

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.2e-06  Score=88.98  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++-+.-++.-+.-||+++.-|.-+|-+|+.+|++..|...|.+|+++.|+ ++.+-..+.++....              
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--------------  204 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA--------------  204 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence            66677788888888888888888888888888888888888888888885 564433333221110              


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                       ++..                                        ...+-..++++|.+||.+..+.+.+|......|++
T Consensus       205 -~~~~----------------------------------------ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~  243 (287)
T COG4235         205 -GQQM----------------------------------------TAKARALLRQALALDPANIRALSLLAFAAFEQGDY  243 (287)
T ss_pred             -CCcc----------------------------------------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence             1111                                        11123356777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhCCCChhH
Q 004984          621 EAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~~ea  640 (721)
                      ++|....+.-+.+.|.+...
T Consensus       244 ~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         244 AEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHHHHHhcCCCCCch
Confidence            77777777777777765543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.45  E-value=7.4e-07  Score=74.46  Aligned_cols=68  Identities=22%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      ..++...+++++|+..+++++.++|+++..+..+|.+++.+|++++|+..+++++++.|+.. +-.+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999877 555544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=5.2e-06  Score=79.45  Aligned_cols=119  Identities=16%  Similarity=0.079  Sum_probs=91.3

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984          491 TKQNVEAALAEINRILGFKLAL-E---CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID  566 (721)
Q Consensus       491 ~lg~~~eAl~~~~kAL~l~P~~-~---~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~  566 (721)
                      ..++...+...+++.+.-.|+. .   ....++..+...|++++|+..|++++.-.|+...                   
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l-------------------   83 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL-------------------   83 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence            5778888888888888888852 2   2234667888889999999999998887766411                   


Q ss_pred             hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW  646 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~  646 (721)
                                                          .+.+++++|.++..+|.+++|+..++. +.-.+-.+.++..+|.
T Consensus        84 ------------------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   84 ------------------------------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence                                                123466778888888999999988866 4555667788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 004984          647 ILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       647 ~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ++...|++++|.+.|++||
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999998885

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.44  E-value=3.1e-06  Score=89.35  Aligned_cols=107  Identities=9%  Similarity=-0.010  Sum_probs=92.2

Q ss_pred             CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984          511 ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS  589 (721)
Q Consensus       511 ~~~~~~~R~~~-~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a  589 (721)
                      +...++..+.. ..+.|+|++|+..|++.++..|+..                                           
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------------------------------------------  177 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------------------------------------------  177 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------------------------------------------
Confidence            34455666654 3667999999999999999999862                                           


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                                  -.+.+++.+|.++...|++++|+..|++++...|+   .+++++.+|.++..+|++++|...|++.++
T Consensus       178 ------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        178 ------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             ------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                        11356788999999999999999999999999888   689999999999999999999999999999


Q ss_pred             cCCCHH
Q 004984          667 MKRSFE  672 (721)
Q Consensus       667 i~~~~~  672 (721)
                      .-|+.+
T Consensus       246 ~yP~s~  251 (263)
T PRK10803        246 KYPGTD  251 (263)
T ss_pred             HCcCCH
Confidence            999987

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=7.5e-07  Score=74.42  Aligned_cols=58  Identities=28%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA  511 (721)
Q Consensus       451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~  511 (721)
                      +|.+++++   ++|++.++++++++|+++.+|..+|.++..+|++++|+.+|+++++..|+
T Consensus         4 ~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    4 IYLQQEDY---EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHhCCCH---HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            44444444   66666666666666666666666666666666666666666666666664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.41  E-value=7.8e-07  Score=73.26  Aligned_cols=65  Identities=17%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      |...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999976 666654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.41  E-value=6.2e-06  Score=76.77  Aligned_cols=99  Identities=22%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      +.+.+++|.++-.+|+.++|+..|++|++..++    ...+..+|..+..+|++++|+..+++++.-.|+.         
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~---------   71 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD---------   71 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence            357889999999999999999999999997654    3455668889999999999999999999888874         


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                                                                    +.+..+....+.+|..+|+++||++.+-.++.
T Consensus        72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                          12333444577789999999999999988775

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.38  E-value=6.5e-07  Score=87.74  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC---
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED---  527 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd---  527 (721)
                      +.|.+.++.+...||.+++++++.|.+|.++.+          +++|+.-|+.||.++|+ .+++++.|.+|..++.   
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~   87 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP   87 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence            556666667777777777777777777766633          35566667777777775 5666666655444433   


Q ss_pred             --------HHHHHHHHHHHHhhCCCchh
Q 004984          528 --------YQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       528 --------~eeAl~d~~kal~L~P~~~~  547 (721)
                              |++|...|++|...+|++..
T Consensus        88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   88 DTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                    78888899999999999844

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.2e-06  Score=88.09  Aligned_cols=84  Identities=20%  Similarity=0.137  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      ..|...|.+|++|.|++++.+...|.+++....   -.+|...|++||++||+ ....+..+..+.+.|||.+|+..+++
T Consensus       173 ~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~  252 (287)
T COG4235         173 SDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM  252 (287)
T ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            555555555555555555555555555543322   34555555555555553 44455555555555555555555555


Q ss_pred             HHhhCCCc
Q 004984          538 ILTLSPDY  545 (721)
Q Consensus       538 al~L~P~~  545 (721)
                      .+.+.|.+
T Consensus       253 lL~~lp~~  260 (287)
T COG4235         253 LLDLLPAD  260 (287)
T ss_pred             HHhcCCCC
Confidence            55555554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.34  E-value=1.4e-06  Score=85.43  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC------
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH------  653 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~------  653 (721)
                      ...++.....+|.+++.++|-|.+|+.|          ...++|+.-|+.||.++|+.++|++++|.++..+|.      
T Consensus        11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~   90 (186)
T PF06552_consen   11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA   90 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence            4567788999999999999999999986          345789999999999999999999999999998865      


Q ss_pred             -----HHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984          654 -----CEEGLRKAEESIQMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       654 -----~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~  683 (721)
                           |++|...|++|..++|+++.|. |+.-+++
T Consensus        91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~  124 (186)
T PF06552_consen   91 EAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA  124 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence                 8999999999999999999875 4544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00047  Score=73.71  Aligned_cols=280  Identities=12%  Similarity=0.040  Sum_probs=175.8

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------------c-------
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------------S-------  444 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~--------------~-------  444 (721)
                      .+|.+++..|+|++|...|+.+.+.+  +.....++|.+++-+|.+.+|-....++-.              +       
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~  141 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL  141 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence            46778888999999999999888774  444567788899999999988665543321              1       


Q ss_pred             ------------CCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          445 ------------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL  512 (721)
Q Consensus       445 ------------~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~  512 (721)
                                  .-.++.+.+.|..|   +|||+.|.+++.-+|++...-.++|..|..+.-|+-+-+.+.--+.--|+.
T Consensus       142 ~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  142 TFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence                        12356777777777   999999999999999999888899999999988887777666666655652


Q ss_pred             -HHHHHHHH------------------------------------------------------------------HHHhc
Q 004984          513 -ECLELRFC------------------------------------------------------------------FFLAL  525 (721)
Q Consensus       513 -~~~~~R~~------------------------------------------------------------------~~~~l  525 (721)
                       .+.++.+.                                                                  -|..+
T Consensus       219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q  298 (557)
T KOG3785|consen  219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ  298 (557)
T ss_pred             HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence             22222111                                                                  06677


Q ss_pred             CCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cc----------------c
Q 004984          526 EDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DD----------------I  587 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-dd----------------~  587 (721)
                      +|..+|+..+.   .++|.-+. |+.++-+....|.--.-.+....|+-+.++--.-... |.                +
T Consensus       299 ~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF  375 (557)
T KOG3785|consen  299 NDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF  375 (557)
T ss_pred             ccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence            77777776544   46776532 4433332222221111122222232222221110000 10                1


Q ss_pred             c-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          588 G-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       588 ~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      + .+..++-.-+-.-++.++.+|.+-+...-|.+.||.+.+-+.-.-+ .+..--.-.++-|+...|+-+-||..+   +
T Consensus       376 ddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---l  452 (557)
T KOG3785|consen  376 DDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---L  452 (557)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---H
Confidence            1 1333444444567788889999999999999999999886654333 112222233556788889988888776   4


Q ss_pred             hcCCCHHHHHH
Q 004984          666 QMKRSFEAFFL  676 (721)
Q Consensus       666 ~i~~~~~a~~~  676 (721)
                      ..+-+-++|-|
T Consensus       453 k~~t~~e~fsL  463 (557)
T KOG3785|consen  453 KTNTPSERFSL  463 (557)
T ss_pred             hcCCchhHHHH
Confidence            45555556554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.33  E-value=7.1e-07  Score=98.55  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=78.2

Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ..+.|+.-|.|||+|+|+.+..|-+|+.++...+.+.+|+.|+++||+++|. ..+|+.||.++.+++++.+|+.+|++.
T Consensus        19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~   98 (476)
T KOG0376|consen   19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV   98 (476)
T ss_pred             hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence            4488889999999999999999999999999999999999999999999997 566677889999999999999999999


Q ss_pred             HhhCCCchh
Q 004984          539 LTLSPDYRM  547 (721)
Q Consensus       539 l~L~P~~~~  547 (721)
                      ..+.|+...
T Consensus        99 ~~l~Pnd~~  107 (476)
T KOG0376|consen   99 KKLAPNDPD  107 (476)
T ss_pred             hhcCcCcHH
Confidence            999999853

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00075  Score=76.44  Aligned_cols=284  Identities=11%  Similarity=-0.003  Sum_probs=177.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE  466 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~  466 (721)
                      +..+-+..+.++.++|+..++ -++..+.......|-+.|++|++++|+..|...++-+.+.-..-...+.. ....++.
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~a~l~  160 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVAAALQ  160 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhhh
Confidence            566778888999999999998 33334444667788899999999999999999888776554444333322 0012222


Q ss_pred             -HHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCHHH--------HHHHHHHHHhcCCH
Q 004984          467 -DLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLALEC--------LELRFCFFLALEDY  528 (721)
Q Consensus       467 -d~~kAieLdP~-~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--------~P~~~~--------~~~R~~~~~~lgd~  528 (721)
                       +..+.+-..|+ ..+-++|+|-++.+.|+|.+|++.+.+|+.+        +-+.+.        ..-.++++..+|+-
T Consensus       161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt  240 (652)
T KOG2376|consen  161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT  240 (652)
T ss_pred             HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence             14566777776 5678999999999999999999999999433        111111        12256789999999


Q ss_pred             HHHHHHHHHHHhhCCCchhh----hhhHHHHHH-------HHHHHHhhhhhhHHHHHHhhhhccc--cccccc-------
Q 004984          529 QAALCDVQAILTLSPDYRMF----EGRVAASQL-------HMLVREHIDNWTIADCWLQLYDRWS--SVDDIG-------  588 (721)
Q Consensus       529 eeAl~d~~kal~L~P~~~~~----~~~~~a~~~-------~~~l~~~~~~~~~A~~~~~l~~~~~--~~dd~~-------  588 (721)
                      ++|..-|...+..+|-+..+    .+...+...       -.+..........++.|.+-...-+  ..-+..       
T Consensus       241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987431    111110000       0000000111111111211111100  000000       


Q ss_pred             -hHHHHHHHHHhCCC-ChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          589 -SLSVIYQMLESDAP-KGVLYF---RQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAE  662 (721)
Q Consensus       589 -al~~~~qaL~l~P~-~~~~~~---~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly~~G~~deAl~~ye  662 (721)
                       .-...++-...-|. .+...+   .+...+.+-..+..|...+..-.+-.|.+ .....-+..+...+|+++.|+..++
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence             01122333333333 333322   33444444557888999999999999988 7888899999999999999999999


Q ss_pred             --------HHHhcCCCHH
Q 004984          663 --------ESIQMKRSFE  672 (721)
Q Consensus       663 --------~Ai~i~~~~~  672 (721)
                              ...+++.+.+
T Consensus       401 ~~~~~~~ss~~~~~~~P~  418 (652)
T KOG2376|consen  401 LFLESWKSSILEAKHLPG  418 (652)
T ss_pred             HHhhhhhhhhhhhccChh
Confidence                    5555555444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.30  E-value=3.5e-07  Score=97.04  Aligned_cols=112  Identities=19%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      .++|++.|.+||+++|..+..|.+||.+++.+++...||.+++.||+++|+ ..-+-.|+.+...+|++++|-.|++.|.
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~  209 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC  209 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence            388999999999999999999999999999999999999999999999998 4555678999999999999999999999


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD  572 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~  572 (721)
                      +++=+-.....-..+....+.++.+...++.+.
T Consensus       210 kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  210 KLDYDEANSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             hccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence            988664322222334455555566665555554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=2.4e-05  Score=83.86  Aligned_cols=158  Identities=12%  Similarity=0.006  Sum_probs=124.1

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHH--Hhhc
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQE--RSLY  458 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~--rg~~  458 (721)
                      ....|.++...|++++|++.+.+.   ++..+..-.--++.+.|+++.|.+.+.+.-+.+.+     ++.+|.+  .|. 
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~-  180 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG-  180 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence            345678888899999998877654   44555555556899999999999999888777664     4444544  453 


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY-QAALCDVQ  536 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~-eeAl~d~~  536 (721)
                      ..+++|.-.|+...+-.|..+..++.+|.+++.+|+++||...+..|++.+|+ ++.+.|+..+...+|+. +.+.+.+.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            34599999999988888889999999999999999999999999999999997 88889999999999998 66777888


Q ss_pred             HHHhhCCCchh
Q 004984          537 AILTLSPDYRM  547 (721)
Q Consensus       537 kal~L~P~~~~  547 (721)
                      +.-..+|++..
T Consensus       261 qL~~~~p~h~~  271 (290)
T PF04733_consen  261 QLKQSNPNHPL  271 (290)
T ss_dssp             HCHHHTTTSHH
T ss_pred             HHHHhCCCChH
Confidence            88889999853

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.25  E-value=1e-06  Score=101.18  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=57.4

Q ss_pred             CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeC----------CCCCCHHHHHHHhhhhccCC
Q 004984          177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGS  246 (721)
Q Consensus       177 ~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~----------~~~is~~~~~~lL~f~Ytg~  246 (721)
                      ....+.||||.||++.|++||.||+++|++|+.+|.....-+....|.+.          -++|.|..|+.+|+|+||++
T Consensus       554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt  633 (1267)
T KOG0783|consen  554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT  633 (1267)
T ss_pred             cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence            34457899999999999999999999999999999876544433333333          23699999999999999996


Q ss_pred             C
Q 004984          247 L  247 (721)
Q Consensus       247 l  247 (721)
                      +
T Consensus       634 ~  634 (1267)
T KOG0783|consen  634 L  634 (1267)
T ss_pred             c
Confidence            4

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=9.5e-07  Score=74.97  Aligned_cols=68  Identities=15%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      |.-+.+++++|.++..+|++++|+..|++|+++.       |.-+..++++|++++.+|++++|++.+++|++|.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4446789999999999999999999999999763       2346789999999999999999999999999873

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.23  E-value=5.8e-06  Score=76.87  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      |+.-|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+-    ..+++.+|.++-.+|+-|.|-..|+.|
T Consensus        62 AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen   62 ALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             HHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            7899999999999999999999999999999999999999999998764    468999999999999999999999999


Q ss_pred             HhcCCCHH
Q 004984          665 IQMKRSFE  672 (721)
Q Consensus       665 i~i~~~~~  672 (721)
                      -.+-.+|+
T Consensus       142 A~LGS~FA  149 (175)
T KOG4555|consen  142 AQLGSKFA  149 (175)
T ss_pred             HHhCCHHH
Confidence            99998887

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.20  E-value=6.7e-05  Score=80.30  Aligned_cols=234  Identities=15%  Similarity=0.100  Sum_probs=142.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc-cch-hhHh---hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHI-YSIA---GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQER  455 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~-~A~~---~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~r  455 (721)
                      ..-|.-+....+++.|+.-+.+.++. +.. .=..   .+..+....|.+.+++..--..|....+      .-.+|.+.
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567777888889998888888766 221 1112   2445777788888776655444443211      12333333


Q ss_pred             hhcCChhHHHHHHHHHHh-------cCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 004984          456 SLYCEGDKRWEDLDKATA-------LDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLE  516 (721)
Q Consensus       456 g~~~~~~eAl~d~~kAie-------LdP~~-----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~  516 (721)
                      .+   ..+.+.+|+|++.       +-.+.     .++...+|.++..++.++.+++.|++|+.+..+.       ....
T Consensus        90 ar---~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv  166 (518)
T KOG1941|consen   90 AR---SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV  166 (518)
T ss_pred             HH---HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence            22   2444555555543       22222     2455557777777777777777777777664321       1122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                      .+|-++-.+.|+++|+-.-.+|.++--++.                                     ++|.  -..|+.+
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~-------------------------------------l~d~--~~kyr~~  207 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVNSYG-------------------------------------LKDW--SLKYRAM  207 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHHhcC-------------------------------------cCch--hHHHHHH
Confidence            344555555555555555555555543331                                     0111  1122222


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                               ..+.++.+|-++|+...|++..+.|.++.-..++      -+...|-|+-..|+.|.||+.||+|+.+.++
T Consensus       208 ---------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  208 ---------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             ---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence                     2467889999999999999999999888655443      4566788999999999999999999998766


Q ss_pred             H
Q 004984          671 F  671 (721)
Q Consensus       671 ~  671 (721)
                      -
T Consensus       279 ~  279 (518)
T KOG1941|consen  279 L  279 (518)
T ss_pred             h
Confidence            4

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.17  E-value=0.0024  Score=72.98  Aligned_cols=314  Identities=10%  Similarity=0.048  Sum_probs=186.5

Q ss_pred             HHHHHHHhhhcCCCC-chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----cc-----h
Q 004984          347 LYCLLSEVAMNLDPR-SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-----GH-----I  415 (721)
Q Consensus       347 ~~~~l~wV~~d~~~r-s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-----~~-----~  415 (721)
                      +.-+..-|.++++.- +.....++..-.+-.++.+  ..-+.-|+.-|...|+++.|-..|++||..     +.     .
T Consensus       213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~  290 (835)
T KOG2047|consen  213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA  290 (835)
T ss_pred             HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH
Confidence            334444555555522 3344556655443333222  344577888899999999999999999876     22     1


Q ss_pred             hhHhhHHHHHHHhC-------------CHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHH
Q 004984          416 YSIAGLARLGYIKG-------------HKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY  482 (721)
Q Consensus       416 ~A~~~lg~~~~~~G-------------~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay  482 (721)
                      |+.+.--.+..+.+             +.+-....|.+.++..|                .=  .=+.+++.||++..-|
T Consensus       291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~----------------~~--lNsVlLRQn~~nV~eW  352 (835)
T KOG2047|consen  291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP----------------LL--LNSVLLRQNPHNVEEW  352 (835)
T ss_pred             HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc----------------hH--HHHHHHhcCCccHHHH
Confidence            12111111112222             11111222222222221                00  1135788899999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          483 MYRASSLMTKQNVEAALAEINRILG-FKLA-----L-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~-----~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      .+|-.++  .|+..+-+..|..|+. .+|.     + ..|...|-+|...|+.+.|..-|++|.+.+=....-.  ..+.
T Consensus       353 ~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL--a~vw  428 (835)
T KOG2047|consen  353 HKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL--AEVW  428 (835)
T ss_pred             Hhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH--HHHH
Confidence            9997665  5788999999999987 4663     2 2345567789999999999999999998875542100  1111


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-------------------hhHHHHHHHHHHH
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-------------------GVLYFRQSLLLLR  616 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~-------------------~~~~~~~g~~L~~  616 (721)
                      ..-+..+..-++++.                  |+.++++|... |.+                   ...|-..+.+..-
T Consensus       429 ~~waemElrh~~~~~------------------Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs  489 (835)
T KOG2047|consen  429 CAWAEMELRHENFEA------------------ALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES  489 (835)
T ss_pred             HHHHHHHHhhhhHHH------------------HHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence            111122222222222                  34445544443 222                   2235556666666


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--HH---HHHHHHHHhhccCCCCCc
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-S--FE---AFFLKAYALADSSQDSSC  690 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-~--~~---a~~~~~~~~~~~~~~~~~  690 (721)
                      +|=++.-...|++.+.|.=--+....|.|..|-.-.-|++|.+.|||-|+|=+ .  |+   .|.-|...-. ++.-+  
T Consensus       490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry-gg~kl--  566 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY-GGTKL--  566 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh-cCCCH--
Confidence            78888778888888888888888888888888888888888888888888833 2  22   3444444421 22222  


Q ss_pred             hhhHHHHHHHhhc-CCCC
Q 004984          691 SSTVVSLLEDALK-CPSD  707 (721)
Q Consensus       691 ~~~~~~~~~~~~~-~~~~  707 (721)
                       ...-.|.|.||+ ||.+
T Consensus       567 -EraRdLFEqaL~~Cpp~  583 (835)
T KOG2047|consen  567 -ERARDLFEQALDGCPPE  583 (835)
T ss_pred             -HHHHHHHHHHHhcCCHH
Confidence             344567788875 7754

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.17  E-value=2.1e-06  Score=94.95  Aligned_cols=93  Identities=18%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA  497 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e  497 (721)
                      |...+.-++++.|+..|.+||+++||.+..|.+|+.    ...+.+|+.|+.+||+++|+..-+|+.||.+.+.++++.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            344566778888888888888888888887877753    2344999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC-HHH
Q 004984          498 ALAEINRILGFKLA-LEC  514 (721)
Q Consensus       498 Al~~~~kAL~l~P~-~~~  514 (721)
                      |+.+|++...+.|+ ++.
T Consensus        91 A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             HHHHHHHhhhcCcCcHHH
Confidence            99999999999997 553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.16  E-value=1.2e-05  Score=78.21  Aligned_cols=83  Identities=10%  Similarity=-0.151  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|...|.-..-+||.++..|+.+|.+++.+|+|++|+..|-.|..++++ |.-.+.-|.++..+|+.++|...|+.|++
T Consensus        54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            66666677777789999999999999999999999999999999999884 66667788899999999999999999999


Q ss_pred             hCCCc
Q 004984          541 LSPDY  545 (721)
Q Consensus       541 L~P~~  545 (721)
                       .|.+
T Consensus       134 -~~~~  137 (165)
T PRK15331        134 -RTED  137 (165)
T ss_pred             -Ccch
Confidence             5775

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.0002  Score=74.16  Aligned_cols=242  Identities=17%  Similarity=0.164  Sum_probs=166.7

Q ss_pred             cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHH-
Q 004984          397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDK-  470 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~k-  470 (721)
                      |.|..++.--.+.-.. +...-..++.|.|..+|.+..-+.....+-  -|++ .+......|    +..++-+..... 
T Consensus        22 Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~l-qAvr~~a~~~~~e~~~~~~~~~l~E~   98 (299)
T KOG3081|consen   22 GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPL-QAVRLLAEYLELESNKKSILASLYEL   98 (299)
T ss_pred             hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChH-HHHHHHHHHhhCcchhHHHHHHHHHH
Confidence            3455444433332222 333345678888999998765544322111  1111 111111121    111222332222 


Q ss_pred             -HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984          471 -ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE  549 (721)
Q Consensus       471 -AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~  549 (721)
                       |-+-+-++.-...--|.+++.-|++++|+....+..    +.++.-..-.++.++.+.+-|..-.++...+|-+..   
T Consensus        99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t---  171 (299)
T KOG3081|consen   99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT---  171 (299)
T ss_pred             HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---
Confidence             333344455566667889999999999998777733    234334445689999999999999999999998742   


Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984          550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL  629 (721)
Q Consensus       550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~  629 (721)
                          ..++             |.+|+.+...-..+.|.  .=+|+.+-+..|..+.+.+.++.+...+||++||...++.
T Consensus       172 ----LtQL-------------A~awv~la~ggek~qdA--fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e  232 (299)
T KOG3081|consen  172 ----LTQL-------------AQAWVKLATGGEKIQDA--FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE  232 (299)
T ss_pred             ----HHHH-------------HHHHHHHhccchhhhhH--HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence                2223             77888888775555443  6688888888999999999999999999999999999999


Q ss_pred             HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       630 Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      |+.-+|++++.+.|+=.+-..+|.-.++...+---+..
T Consensus       233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            99999999999999999999999999988887665554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=0.0036  Score=69.38  Aligned_cols=301  Identities=12%  Similarity=0.083  Sum_probs=176.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cc--hhhHhh--HHHHHHHhCCHHHHHHHHHHH
Q 004984          367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GH--IYSIAG--LARLGYIKGHKLWAYEKLNSV  441 (721)
Q Consensus       367 ~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~--~~A~~~--lg~~~~~~G~~~~A~~~~~~a  441 (721)
                      .+.++.+-|.++    ...+...+.--...|...-|...|++|++. +.  ......  .|.--..+..++.|.-.|.-|
T Consensus       195 ~IYerfV~~HP~----v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA  270 (677)
T KOG1915|consen  195 SIYERFVLVHPK----VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYA  270 (677)
T ss_pred             HHHHHHheeccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555544432    233333444445668888888999999887 32  222222  333344566777888888888


Q ss_pred             HhcCCCc-HHHHHHH-----hhcCCh---hHHHH-----HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          442 ISSVTPL-GWMYQER-----SLYCEG---DKRWE-----DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG  507 (721)
Q Consensus       442 I~~~~~~-~~ay~~r-----g~~~~~---~eAl~-----d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~  507 (721)
                      |..-|.. +.-++.-     .++|+.   ++++.     .|++-++-||.+.++|...--+--..|+.+.-.+.|.|||.
T Consensus       271 ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa  350 (677)
T KOG1915|consen  271 LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA  350 (677)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence            8877764 2222221     234433   55554     59999999999999999988888888999999999999998


Q ss_pred             cCCC-HHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH------------HHHHHHHh
Q 004984          508 FKLA-LECLEL--------RFCF--FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ------------LHMLVREH  564 (721)
Q Consensus       508 l~P~-~~~~~~--------R~~~--~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~------------~~~~l~~~  564 (721)
                      --|- .+.-+-        +..+  -+..+|.+.+...|+.+|+|=|.-..-+.++=...            .+..+-.+
T Consensus       351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            7664 222111        1122  35678999999999999999998543221111111            11111111


Q ss_pred             hhhhhHHH---HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          565 IDNWTIAD---CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       565 ~~~~~~A~---~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                      .....+..   -+..+=..+...|+-  -..|++-|+-+|.+-.+|...|.+-..||+.+.|...|..|+.-..-+.--+
T Consensus       431 IG~cPK~KlFk~YIelElqL~efDRc--RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel  508 (677)
T KOG1915|consen  431 IGKCPKDKLFKGYIELELQLREFDRC--RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL  508 (677)
T ss_pred             hccCCchhHHHHHHHHHHHHhhHHHH--HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence            11111111   011111111111211  2356666777777777777777777777777777777777766554443333


Q ss_pred             HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          642 VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEA  673 (721)
Q Consensus       642 ~~~G~~Ly--~~G~~deAl~~ye~Ai~i~~~~~a  673 (721)
                      ...+-|-+  ..|.++.|-+.|++-+...+-...
T Consensus       509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv  542 (677)
T KOG1915|consen  509 LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV  542 (677)
T ss_pred             HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence            33443332  236777777777777776555553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.11  E-value=0.00019  Score=70.76  Aligned_cols=167  Identities=14%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      +.++....+.++..|+.. -.+.+|+++.++|++.||...|..++.  +.-++..+.-++.+....+++.+|..-+++..
T Consensus        73 ~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          73 ERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             hHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            333444455666667654 455688888888888888888888885  22345555567778888888888888888888


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      +-+|....-.    ..-+.+........+.+|                  -+-+++++.--|+ +.+....+.-|.++||
T Consensus       152 e~~pa~r~pd----~~Ll~aR~laa~g~~a~A------------------esafe~a~~~ypg-~~ar~~Y~e~La~qgr  208 (251)
T COG4700         152 EYNPAFRSPD----GHLLFARTLAAQGKYADA------------------ESAFEVAISYYPG-PQARIYYAEMLAKQGR  208 (251)
T ss_pred             hcCCccCCCC----chHHHHHHHHhcCCchhH------------------HHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence            8887753211    111122222222333323                  3345566665555 3556666777777777


Q ss_pred             hHHHHHHHHH----HHHhCCCChhHHHHHHHHHHhcCCH
Q 004984          620 PEAAMRSLQL----ARQHAASDHERLVYEGWILYDTSHC  654 (721)
Q Consensus       620 ~eeAl~~~~~----Al~l~P~~~ea~~~~G~~Ly~~G~~  654 (721)
                      ..||-.-|..    +.+-.|  +..-.++||+-...|+.
T Consensus       209 ~~ea~aq~~~v~d~~~r~~~--H~rkh~reW~~~A~~~~  245 (251)
T COG4700         209 LREANAQYVAVVDTAKRSRP--HYRKHHREWIKTANERL  245 (251)
T ss_pred             hhHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHH
Confidence            7666554433    333333  23345667766554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.11  E-value=3.8e-05  Score=85.34  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHH
Q 004984          396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKA  471 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kA  471 (721)
                      .+++++|+..|++..+.+| .....+++++...++..+|++.+++++...|..+..+..++.+    ++++.|+....+|
T Consensus       182 t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a  260 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA  260 (395)
T ss_pred             cccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4679999999999776664 4556788888888887777777777776666665555554432    2335555555555


Q ss_pred             HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          472 TALDPTLSYPYMYRASSLMTKQNVEAALAEIN  503 (721)
Q Consensus       472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~  503 (721)
                      +++.|+...+|+.+|.+|..+|++++|+..+|
T Consensus       261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  261 VELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            55555555555555555555555555555554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.11  E-value=4.8e-05  Score=74.07  Aligned_cols=79  Identities=10%  Similarity=-0.070  Sum_probs=47.0

Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA  680 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~  680 (721)
                      |+++++|+.+|.++..++.+++|+..|-.|.-++++|+...++.|.|++.+|+.++|...|+-+|. +|..+.---||-+
T Consensus        68 ~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~  146 (165)
T PRK15331         68 FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALV  146 (165)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence            333445555666666666666666666666666666666666666666666666666666666666 4554444444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=5.7e-06  Score=88.18  Aligned_cols=141  Identities=15%  Similarity=0.171  Sum_probs=111.3

Q ss_pred             EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCc----ceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL  259 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~----~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL  259 (721)
                      |.+-++++ .|||+.++ .+..||+.||.|+|.|+..    ....++  ..+..+.+.+++|+|+++-+ +.++-..+++
T Consensus       295 iql~~~~R-yP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvl  369 (516)
T KOG0511|consen  295 IQLPEEDR-YPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVL  369 (516)
T ss_pred             cccccccc-ccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence            44444444 99999999 5678999999999999652    223344  46778999999999999999 9999999999


Q ss_pred             HHhhhcChh---hHHHHHHHHHHhhcC--CHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCChHHHHHHhc
Q 004984          260 IFANKFCCE---RLKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFS  329 (721)
Q Consensus       260 ~aAd~~~v~---~L~~~C~~~L~~~l~--~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~  329 (721)
                      .+|+++-++   .|+.+-...+.+...  +.-++..+++++.+-.++.|......++.+|+...+++++..+.+.
T Consensus       370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~  444 (516)
T KOG0511|consen  370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR  444 (516)
T ss_pred             HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence            999999776   266666666655442  2356899999999999999999999999999888777776666553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.09  E-value=5.5e-05  Score=84.13  Aligned_cols=94  Identities=18%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      |+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus       219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~  297 (395)
T PF09295_consen  219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML  297 (395)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence            47788899999999999999999999999999999999999999999999999999999999999999996665 66666


Q ss_pred             CCHHHHHHHHHHhhc
Q 004984          669 RSFEAFFLKAYALAD  683 (721)
Q Consensus       669 ~~~~a~~~~~~~~~~  683 (721)
                      |..+-+-+|-..-.+
T Consensus       298 ~~~~k~~~~~~~p~~  312 (395)
T PF09295_consen  298 TYKDKYKLKRPVPAK  312 (395)
T ss_pred             CCccchhhhcCCCcc
Confidence            666666666555333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.09  E-value=3.7e-06  Score=71.29  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGF----KLA----LECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l----~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      |+-+.+|.++|.+|.++|++++|+..|++|+.+    .++    ...+.+.|.++..+|++++|+..|++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455788999999999999999999999999976    222    234567899999999999999999999986

...

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=98.09  E-value=2.3e-06  Score=76.47  Aligned_cols=83  Identities=17%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             HHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCC
Q 004984          288 AVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD  359 (721)
Q Consensus       288 ~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~  359 (721)
                      |+.++.+|..++++.|...|.+++..||.+        .|+.+.+..++++++++     +..|..++.++++|+.++..
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~   75 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE   75 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence            788899999999999999999999888875        67888999999999984     77888999999999999987


Q ss_pred             CCchhHHHHHHHHHHhh
Q 004984          360 PRSDKTVCFLERLLESA  376 (721)
Q Consensus       360 ~rs~~~~~LLe~Lv~~a  376 (721)
                      .|.++...||+. +|++
T Consensus        76 ~r~~~~~~Ll~~-iR~~   91 (103)
T PF07707_consen   76 NREEHLKELLSC-IRFP   91 (103)
T ss_dssp             HHTTTHHHHHCC-CHHH
T ss_pred             HHHHHHHHHHHh-CCcc
Confidence            788888899976 5543

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.07  E-value=1.1e-05  Score=66.27  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR  518 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R  518 (721)
                      ++|+..|+++++.+|++..++..+|.+++++|++++|...+++++..+|+ +..+..+
T Consensus         8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888887 4444333

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00075  Score=72.22  Aligned_cols=259  Identities=14%  Similarity=0.055  Sum_probs=143.6

Q ss_pred             hccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-------CcHHHHHHHhhcCChhHH
Q 004984          395 LRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQERSLYCEGDKR  464 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-------~~~~ay~~rg~~~~~~eA  464 (721)
                      ...+|..|+...+-++..+.   .+....+|.+++.+|++++|++.|.-+.+...       +++..++-.|.|   .+|
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~eA  110 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IEA  110 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HHH
Confidence            44578889888887776632   23455789999999999999999987776543       344555555655   666


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       465 l~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      -..-.    -.|+.+---.-+-.+-..+|+-+ -+..|..-++-  ..+.-..++.++...--|.+||..|.+++.-+|+
T Consensus       111 ~~~~~----ka~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  111 KSIAE----KAPKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHh----hCCCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            54322    23444332222223333333322 22233332210  1111112233333333466677777777766666


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc--CChHH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEA  622 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l--g~~ee  622 (721)
                      |......++      +.-...+.++.+                  -.++.-=|...|+++.+.+.++-.+.|+  ||..+
T Consensus       184 y~alNVy~A------LCyyKlDYydvs------------------qevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae  239 (557)
T KOG3785|consen  184 YIALNVYMA------LCYYKLDYYDVS------------------QEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE  239 (557)
T ss_pred             hhhhHHHHH------HHHHhcchhhhH------------------HHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence            633221111      111111222222                  3344444566666666666666555552  22221


Q ss_pred             HH----------------HHH----------HHHHHhCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          623 AM----------------RSL----------QLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       623 Al----------------~~~----------~~Al~l~P~----~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +.                ...          +-|++.-|.    -+||..|+...++.+|+.+||+..-.   .++|...
T Consensus       240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP  316 (557)
T KOG3785|consen  240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP  316 (557)
T ss_pred             HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence            11                110          123333332    46899999999999999999986644   5899988


Q ss_pred             -HHHHHHHHhhccCCCCCc
Q 004984          673 -AFFLKAYALADSSQDSSC  690 (721)
Q Consensus       673 -a~~~~~~~~~~~~~~~~~  690 (721)
                       .|-+||.+.+--+....|
T Consensus       317 ~EyilKgvv~aalGQe~gS  335 (557)
T KOG3785|consen  317 YEYILKGVVFAALGQETGS  335 (557)
T ss_pred             HHHHHHHHHHHHhhhhcCc
Confidence             999999998866655443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0007  Score=71.10  Aligned_cols=277  Identities=15%  Similarity=0.089  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~--~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      .-++-.+|.+|....+|.+|..+|++.-...|.++.+  +-+..+++.|.+..|++... .+..++++    .++..  +
T Consensus        44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~-~~~D~~~L----~~~~l--q  116 (459)
T KOG4340|consen   44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF-LLLDNPAL----HSRVL--Q  116 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH-HhcCCHHH----HHHHH--H
Confidence            3456789999999999999999999977666666543  45677888899998887644 22222322    22210  0


Q ss_pred             hhHHHH-------HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHH
Q 004984          461 GDKRWE-------DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA  530 (721)
Q Consensus       461 ~~eAl~-------d~~kAieLdP--~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~ee  530 (721)
                      .+.||.       --+-.++.-|  +.+...++.|-++...|+|++|+.-|+.|+++.- ++-..++.+.++...|+++.
T Consensus       117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas  196 (459)
T KOG4340|consen  117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS  196 (459)
T ss_pred             HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence            122221       1233455556  6788999999999999999999999999999876 57777999999999999999


Q ss_pred             HHHHHHHHHhhC----CCch--h--------hhhhH---------HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 004984          531 ALCDVQAILTLS----PDYR--M--------FEGRV---------AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI  587 (721)
Q Consensus       531 Al~d~~kal~L~----P~~~--~--------~~~~~---------~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~  587 (721)
                      |+.....+++..    |..-  |        +.|..         .+.++...+.-..++++.|.               
T Consensus       197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~---------------  261 (459)
T KOG4340|consen  197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQ---------------  261 (459)
T ss_pred             HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHH---------------
Confidence            999988887743    4321  0        11111         13334444444444444442               


Q ss_pred             chHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          588 GSLSVIYQMLESDAP-----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE  662 (721)
Q Consensus       588 ~al~~~~qaL~l~P~-----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye  662 (721)
                            +.-+.+-|+     +|....|++.. ..-++|.+..+-++-.++++|--.|.+-|+=+++.+..-|+-|-..  
T Consensus       262 ------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv--  332 (459)
T KOG4340|consen  262 ------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV--  332 (459)
T ss_pred             ------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH--
Confidence                  111222232     34556666543 3356788889999999999998888888888888888777776643  


Q ss_pred             HHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984          663 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS  706 (721)
Q Consensus       663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (721)
                        ++-+|+..=+||-              .|...||+--.-||.
T Consensus       333 --LAEn~~lTyk~L~--------------~Yly~LLdaLIt~qT  360 (459)
T KOG4340|consen  333 --LAENAHLTYKFLT--------------PYLYDLLDALITCQT  360 (459)
T ss_pred             --HhhCcchhHHHhh--------------HHHHHHHHHHHhCCC
Confidence              4456776666653              344455555555554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.02  E-value=4.8e-06  Score=59.88  Aligned_cols=32  Identities=13%  Similarity=0.115  Sum_probs=27.1

Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984          627 LQLARQHAASDHERLVYEGWILYDTSHCEEGL  658 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl  658 (721)
                      |++|++++|+|+++++++|++|+..|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67888888888888888888888888888875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.02  E-value=4.7e-06  Score=59.93  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA  500 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~  500 (721)
                      |+|||+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999973

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.01  E-value=0.0013  Score=77.49  Aligned_cols=227  Identities=14%  Similarity=0.033  Sum_probs=150.3

Q ss_pred             hCCHHHHHHHHHHHHhcCCCcHHH--HHHHh--hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          428 KGHKLWAYEKLNSVISSVTPLGWM--YQERS--LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN  503 (721)
Q Consensus       428 ~G~~~~A~~~~~~aI~~~~~~~~a--y~~rg--~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~  503 (721)
                      .+++..|++...+.++.+|+...+  +-...  +.|++++|+..++..-.+.|++....--+-.+|.++|++++|...|.
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            456666777777777777764322  22221  23555777777777777788888888889999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984          504 RILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS  583 (721)
Q Consensus       504 kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~  583 (721)
                      ||+.-+|+.+.+.....+|.+-++|.+--+.=-+.-+.-|+.+.+.+-+.-..+++     ....+...           
T Consensus       102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~-----------  165 (932)
T KOG2053|consen  102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL-----------  165 (932)
T ss_pred             HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc-----------
Confidence            99999999666666777888888876644433333346788766554443333322     22222221           


Q ss_pred             ccccc-hHH--HHHHHHHhC-CCChhH-HHHHHHHHHHcCChHHHHHHH-HHHHHhCCCChhHHHHHHHH-HHhcCCHHH
Q 004984          584 VDDIG-SLS--VIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSL-QLARQHAASDHERLVYEGWI-LYDTSHCEE  656 (721)
Q Consensus       584 ~dd~~-al~--~~~qaL~l~-P~~~~~-~~~~g~~L~~lg~~eeAl~~~-~~Al~l~P~~~ea~~~~G~~-Ly~~G~~de  656 (721)
                       +.+- +++  .+.+.++.. +-...+ -+-.=.+|..+|.++||...+ ..-.+..|.....+.+.+.- +-.++++++
T Consensus       166 -~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~  244 (932)
T KOG2053|consen  166 -DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE  244 (932)
T ss_pred             -cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence             1011 233  677777776 222222 223345777899999999999 44555566666666666655 455699999


Q ss_pred             HHHHHHHHHhcCCCH
Q 004984          657 GLRKAEESIQMKRSF  671 (721)
Q Consensus       657 Al~~ye~Ai~i~~~~  671 (721)
                      -.+.-.+.+.-.|+.
T Consensus       245 l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  245 LFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHhCCcc
Confidence            999999999999985

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2e-05  Score=80.27  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=75.5

Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ++..|+..|.+||-++|+.+..|.||+..++.+++++....+.+||++|+|+ ...++..|..+.....|.+||..+++|
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3489999999999999999999999999999999999999999999999998 677788999999999999999999999


Q ss_pred             Hhh
Q 004984          539 LTL  541 (721)
Q Consensus       539 l~L  541 (721)
                      ..+
T Consensus       105 ~sl  107 (284)
T KOG4642|consen  105 YSL  107 (284)
T ss_pred             HHH
Confidence            654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.89  E-value=0.0011  Score=65.60  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=91.7

Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHhhcCChhHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCH
Q 004984          423 RLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNV  495 (721)
Q Consensus       423 ~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg~~~~~~eAl~d~~kAie-LdP~~~~ay~~rg~~l~~lg~~  495 (721)
                      ....+.=|++.+++...+.++.-|.      ++.+..+.|.+   .||...|.+|+. +-.+++.-...++.+....+++
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~---~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRY---HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhh---hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            3344444555555555555555553      45555555555   777777777664 5667778888999999999999


Q ss_pred             HHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          496 EAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      .+|...+++..+.+|.   |+.....+..+..+|++++|...|+.++.--|+..
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            9999999999999994   66666677889999999999999999999999863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.89  E-value=0.0003  Score=67.13  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      +..+++.|...++.|+|++|+..|++...--|-    ..+-..++.+|.+.|++++|+..+++-++|+|++..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            467888999999999999999999999998884    233455789999999999999999999999999843

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=3.7e-05  Score=78.35  Aligned_cols=111  Identities=15%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-  667 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i-  667 (721)
                      |+.+|-+||-++|..+.+|.|++.+++++++++-...+.++|+++.|+.+-+++.+|.++.....|++|++...||.++ 
T Consensus        29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999999999775 


Q ss_pred             ---CCCHHHHHHHHHHhhccC-CCCCchhhHHHHHH
Q 004984          668 ---KRSFEAFFLKAYALADSS-QDSSCSSTVVSLLE  699 (721)
Q Consensus       668 ---~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~  699 (721)
                         .++|+-=+-++.-.|--- -..+++..+.|.+|
T Consensus       109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E  144 (284)
T KOG4642|consen  109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE  144 (284)
T ss_pred             hcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence               344443333333333222 22333344455444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.83  E-value=0.0047  Score=64.22  Aligned_cols=146  Identities=19%  Similarity=0.207  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE  454 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay~~  454 (721)
                      ...+|+-|...++.|+|++|+..|++.....|     ..+...++-++++.|+++.|+...++-|.++|+   ...+++-
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            45678999999999999999999999876633     335667888999999999999999999999774   5677777


Q ss_pred             HhhcC------------ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004984          455 RSLYC------------EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF  522 (721)
Q Consensus       455 rg~~~------------~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~  522 (721)
                      +|...            ...+|+.+|...|.--|+..++---.    .++-....+++..+.+|            |..|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~----~~i~~~~d~LA~~Em~I------------aryY  177 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK----ARIVKLNDALAGHEMAI------------ARYY  177 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH----HHHHHHHHHHHHHHHHH------------HHHH
Confidence            77531            01555666666666666654332111    11111222222222222            3467


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCC
Q 004984          523 LALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       523 ~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      .+.|.+..|+.-++.+++-=|+
T Consensus       178 ~kr~~~~AA~nR~~~v~e~y~~  199 (254)
T COG4105         178 LKRGAYVAAINRFEEVLENYPD  199 (254)
T ss_pred             HHhcChHHHHHHHHHHHhcccc
Confidence            7777777777777777776444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.82  E-value=0.00014  Score=69.42  Aligned_cols=63  Identities=21%  Similarity=0.063  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT  446 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~  446 (721)
                      ..++..|...++.|+|++|++.|+.....-|     ..|...+|-+|+..|++.+|++.+.+-|+++|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3456666666677777777766666444411     22334455555555555555555555555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.80  E-value=2.2e-05  Score=83.59  Aligned_cols=88  Identities=20%  Similarity=0.186  Sum_probs=79.5

Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004984          426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE  501 (721)
Q Consensus       426 ~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~  501 (721)
                      +..|.++.|++.|.++|+++|.++..|-.|+..    .+...|+.|++.|+++||+.+..|..||.+...+|++++|-.+
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            556889999999999999999999999999753    4558999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHH
Q 004984          502 INRILGFKLALE  513 (721)
Q Consensus       502 ~~kAL~l~P~~~  513 (721)
                      +..|.+++-+.+
T Consensus       205 l~~a~kld~dE~  216 (377)
T KOG1308|consen  205 LALACKLDYDEA  216 (377)
T ss_pred             HHHHHhccccHH
Confidence            999999876543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.00056  Score=71.80  Aligned_cols=224  Identities=18%  Similarity=0.072  Sum_probs=157.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      .+||+.+.--.+-+|..-....-+|.+|...++|.+|-..|...-.+-|...-+ ...+..+...+.+.+|++.......
T Consensus        27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D  106 (459)
T KOG4340|consen   27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD  106 (459)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence            777777777778888888888888888888888999999998888888874433 3355667778888888876554432


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC--CChhHHHHHHHHHHHcC
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P--~~~~~~~~~g~~L~~lg  618 (721)
                      - |+                +....-+.+.|       -.+++-|..++-+.++|    -|  +.++..++.|-++.+-|
T Consensus       107 ~-~~----------------L~~~~lqLqaA-------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen  107 N-PA----------------LHSRVLQLQAA-------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG  158 (459)
T ss_pred             C-HH----------------HHHHHHHHHHH-------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence            1 21                11111122222       22333344445555544    35  67888999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC------------------------
Q 004984          619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ----MKRS------------------------  670 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~----i~~~------------------------  670 (721)
                      .+|+|+.-|+.|++..--++-.-|+.+.+.|..|+++.|+..-.+.|+    -.|.                        
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            999999999999999999999999999999999999999988776665    2343                        


Q ss_pred             --HHHHHHHHHHh-------------h------ccCCCCCchhhHHHHHHHhhcCCCCcccccccc
Q 004984          671 --FEAFFLKAYAL-------------A------DSSQDSSCSSTVVSLLEDALKCPSDRLRKGTEQ  715 (721)
Q Consensus       671 --~~a~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (721)
                        .+||+||+-..             -      .+-+||-+=-  -.-|-++-.=|.||+||=|-|
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH--N~Al~n~~~~p~~g~~KLqFL  302 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH--NQALMNMDARPTEGFEKLQFL  302 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh--HHHHhcccCCccccHHHHHHH
Confidence              25899997532             2      2456664321  123445556688888886543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00024  Score=72.73  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChh
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD  462 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~  462 (721)
                      -++++.|+-++..|+|+||+..|..||.. ....       ...+=|+.+. ++.-...+.+.-|....+.+-|.|   -
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~-------lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~---y  247 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ-------LKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEY---Y  247 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH-------hccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHH---H
Confidence            35689999999999999999999998754 1100       1111222222 111122333444566666666666   7


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC  514 (721)
Q Consensus       463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~  514 (721)
                      ++++.-+..+..+|++..||+.||-+...-=+.+||-+||.++|+++|....
T Consensus       248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            7788888888888888888888888888888888888888888888886443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.001  Score=68.91  Aligned_cols=183  Identities=13%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 004984          429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILG  507 (721)
Q Consensus       429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~-~~eAl~~~~kAL~  507 (721)
                      .++.+++..|+..|..+-             +...|+.--+.+|.++|.+.-.|.+|-.++..++. ..+=+..++++++
T Consensus        40 e~fr~~m~YfRAI~~~~E-------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e  106 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNE-------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIE  106 (318)
T ss_pred             hhHHHHHHHHHHHHhccc-------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            345566666665555542             23556666678999999999999999988888764 6677888888998


Q ss_pred             cCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 004984          508 FKL-ALECLELRFCFFLALEDYQ-AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD  585 (721)
Q Consensus       508 l~P-~~~~~~~R~~~~~~lgd~e-eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d  585 (721)
                      -+| +.+-|+.|..+...+|+.. .=+.-.+.++..|.++..      +.+.+.=+-.....|+.-              
T Consensus       107 ~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH------aWshRqW~~r~F~~~~~E--------------  166 (318)
T KOG0530|consen  107 DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH------AWSHRQWVLRFFKDYEDE--------------  166 (318)
T ss_pred             hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh------hhHHHHHHHHHHhhHHHH--------------
Confidence            888 4888888888877777666 555666666666655522      112111111111111111              


Q ss_pred             ccchHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCh-----HHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          586 DIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-LNCP-----EAAMRSLQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       586 d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~-lg~~-----eeAl~~~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                          |...++.|+.|-.|-.+|+.|=.+... .|=.     +.=+......+.+.|+|-.|+.|+.=++
T Consensus       167 ----L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l  231 (318)
T KOG0530|consen  167 ----LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL  231 (318)
T ss_pred             ----HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence                556666666666666666655444433 1111     1223334455555555555555554333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.72  E-value=5.3e-05  Score=53.81  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                      +++++++|.+++.+|++++|+..|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.14  Score=57.21  Aligned_cols=319  Identities=12%  Similarity=0.093  Sum_probs=210.0

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHh----hcCC
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCE  460 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg----~~~~  460 (721)
                      ...|.--..++++..|...|++||..++.+  .+...+-.-.+......|...+++||...|.....|+.--    .+|-
T Consensus        77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN  156 (677)
T KOG1915|consen   77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN  156 (677)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence            344555667788899999999999886544  3444555566677788888999999999998776665531    2233


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ..+|...|++=++..|+- .+|..--.--.+.+..+.|-..|.|-+-.-|+...|..-+-+-.+-|..+-|...|.+|++
T Consensus       157 i~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie  235 (677)
T KOG1915|consen  157 IAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE  235 (677)
T ss_pred             cHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            388888999999999974 5676666666677788888888888887788877776666677788888888888888888


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccc----------------cccccc----hHH-----HHH
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWS----------------SVDDIG----SLS-----VIY  594 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~----------------~~dd~~----al~-----~~~  594 (721)
                      .=.+..+..   .....-...+...+.++.|...-+. .|.+.                ..+|..    ++.     .|+
T Consensus       236 ~~~~d~~~e---~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE  312 (677)
T KOG1915|consen  236 FLGDDEEAE---ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE  312 (677)
T ss_pred             HhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence            655543211   0111111122222222222211110 01111                112222    222     789


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH----HHHHH------hcCCHHHHHHHHHHH
Q 004984          595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----GWILY------DTSHCEEGLRKAEES  664 (721)
Q Consensus       595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~----G~~Ly------~~G~~deAl~~ye~A  664 (721)
                      +.+..+|-|-++||..=.+..-.|..+.-++.|.+|+.--|-..+--+.+    =|+-|      ...+.+-+-+.|...
T Consensus       313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888754433222    23322      358999999999999


Q ss_pred             HhcCCCHHHHHHHHHHhhc----cCCCCCchhhHHHHHHHhh-cCCCCccccc
Q 004984          665 IQMKRSFEAFFLKAYALAD----SSQDSSCSSTVVSLLEDAL-KCPSDRLRKG  712 (721)
Q Consensus       665 i~i~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  712 (721)
                      |.|=|--.==|-|-+.++-    --+|-.-.   -+.|-.|+ +||-|.|=||
T Consensus       393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A---RkiLG~AIG~cPK~KlFk~  442 (677)
T KOG1915|consen  393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA---RKILGNAIGKCPKDKLFKG  442 (677)
T ss_pred             HhhcCcccchHHHHHHHHHHHHHHHcccHHH---HHHHHHHhccCCchhHHHH
Confidence            9998854433333333321    12232222   23455554 7999888776

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.62  E-value=7.4e-05  Score=66.21  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=70.0

Q ss_pred             EEEEEcCeEEEeehhhhh-cCCHHHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCCCCHHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI  258 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLA-a~S~yF~amF~~~---~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~i~~~~v~~L  258 (721)
                      |+|.|||+.|.+-+..|. ....+|..||.+.   ........+-|.   =+|..|+.||+|+.+ +.+.......+..+
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l   77 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL   77 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence            789999999999999998 5567999999974   445566778776   799999999999999 77772235678999


Q ss_pred             HHHhhhcChhhH-HHHH
Q 004984          259 LIFANKFCCERL-KDAC  274 (721)
Q Consensus       259 L~aAd~~~v~~L-~~~C  274 (721)
                      +.-|++|+++.+ ++.|
T Consensus        78 ~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   78 LEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHHHT-HHHHBHHC
T ss_pred             HHHHHHcCCCccccCCC
Confidence            999999999998 7776

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.00031  Score=72.09  Aligned_cols=96  Identities=20%  Similarity=0.302  Sum_probs=83.1

Q ss_pred             EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC-c-CCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC--HHHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL  259 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~-E-s~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~--~~~v~~LL  259 (721)
                      |.+-|||+.|..++.-|.-...+|++||.+++. + .....|-|.   =||.-|..+|+||..|.+. ++  ...+.+|+
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~   82 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL   82 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence            668899999999999999999999999999873 2 234668887   7999999999999988877 65  45788999


Q ss_pred             HHhhhcChhhHHHHHHHHHHhhcC
Q 004984          260 IFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       260 ~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                      .=|.+|.+++|++.|...+.....
T Consensus        83 ~EA~fYlL~~Lv~~C~~~i~~~~~  106 (230)
T KOG2716|consen   83 REAEFYLLDGLVELCQSAIARLIR  106 (230)
T ss_pred             HHHHHhhHHHHHHHHHHHhhhccc
Confidence            999999999999999998887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.56  E-value=0.00015  Score=55.07  Aligned_cols=43  Identities=21%  Similarity=0.121  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW  646 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~  646 (721)
                      +.+|+.+|.++..+|++++|++.|+++++.+|+|++++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4678889999999999999999999999999999999888774

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.55  E-value=0.022  Score=61.55  Aligned_cols=263  Identities=14%  Similarity=0.053  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----
Q 004984          379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP----  447 (721)
Q Consensus       379 ~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~----  447 (721)
                      ......++-++...+...-++.+++.+-..-+.+.       +.+++.-+|+++.-+|.++.+++.|++|...-.+    
T Consensus        79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~  158 (518)
T KOG1941|consen   79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence            33456677777777777777888877777666652       2344556888888899999999999998886443    


Q ss_pred             ---------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          448 ---------LGWMYQERSLYCEGDKRWEDLDKATALDPTLS----------YPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       448 ---------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~----------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                               +|..|-...++   ++|+-...||.+|-....          .+.+.++.+|..+|+.-.|.+..+.|-++
T Consensus       159 ~LElqvcv~Lgslf~~l~D~---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDY---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhh---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                     34444444334   888888888888765543          56778999999999999999999999887


Q ss_pred             CCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984          509 KLA--LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW  581 (721)
Q Consensus       509 ~P~--~~~~~-----~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~  581 (721)
                      ...  ..+.+     ..|.+|...||.|.|.+-|+.|...-..--.-.|++.+..-.            |.||..+--. 
T Consensus       236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~------------Akc~~~~r~~-  302 (518)
T KOG1941|consen  236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGA------------AKCLETLRLQ-  302 (518)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH------------HHHHHHHHHh-
Confidence            542  22233     346789999999999999999987543321112233333222            3333222111 


Q ss_pred             ccccccchHHHHHHHHHhCCCC----h--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 004984          582 SSVDDIGSLSVIYQMLESDAPK----G--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE  655 (721)
Q Consensus       582 ~~~dd~~al~~~~qaL~l~P~~----~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~d  655 (721)
                      ...-.-+++....++|++...-    .  ..+-+.+.++--+|..++=-..+.+|-+..   .+.-.|-|.+=-..|--+
T Consensus       303 ~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~  379 (518)
T KOG1941|consen  303 NKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKN  379 (518)
T ss_pred             hcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCc
Confidence            0001122566666776664321    1  246677888877888887777777765553   556667777766666666


Q ss_pred             HHHHH
Q 004984          656 EGLRK  660 (721)
Q Consensus       656 eAl~~  660 (721)
                      |-++.
T Consensus       380 e~LqA  384 (518)
T KOG1941|consen  380 ERLQA  384 (518)
T ss_pred             ccccc
Confidence            65543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.55  E-value=0.00012  Score=51.89  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA  511 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~  511 (721)
                      .+|+++|.++..+|++++|+..|++||+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.003  Score=65.54  Aligned_cols=61  Identities=10%  Similarity=0.006  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ..-+....++..+|.|.-.+..++++|+.+|.  +.....+|-+-++.||.+.|...|+++-+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek  240 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK  240 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            45566888999999999999999999999864  66666678899999999999999997764

>smart00875 BACK BTB And C-terminal Kelch

Probab=97.52  E-value=9.8e-05  Score=65.19  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             HHHHHHhcccCChhHHHHHHHHHHhhcc--------cCCChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCCC
Q 004984          289 VELMGYAIEENSPVLAVSCLQVFLRELP--------DCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP  360 (721)
Q Consensus       289 ~~l~~~A~~~~~~~L~~~c~~~~l~~~~--------~~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~  360 (721)
                      +.++.+|..|+++.|.+.|.+++..|+.        ..|+.+.+..++.+++++     +..|..++.++++|+.++...
T Consensus         2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~~~   76 (101)
T smart00875        2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDPER   76 (101)
T ss_pred             HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCHHH
Confidence            4455555555556666666555555432        367888999999999985     667888999999999998753


Q ss_pred             CchhHHHHHHH
Q 004984          361 RSDKTVCFLER  371 (721)
Q Consensus       361 rs~~~~~LLe~  371 (721)
                      +. +...+++.
T Consensus        77 ~~-~~~~ll~~   86 (101)
T smart00875       77 RR-HLPELLSH   86 (101)
T ss_pred             HH-HHHHHHHh
Confidence            33 66667766

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.52  E-value=0.15  Score=58.94  Aligned_cols=290  Identities=14%  Similarity=0.081  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchh------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----------c
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP----------L  448 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~----------~  448 (721)
                      -+..+|..|-..|+++.|...|++|.+.+...      .|..-|-.-....+++.|++.+.+|...=.+          -
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            34567888888999999999999999885322      2334444555667888888888877654111          1


Q ss_pred             HHHHHHH-----hhc-------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-HH
Q 004984          449 GWMYQER-----SLY-------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LA-LE  513 (721)
Q Consensus       449 ~~ay~~r-----g~~-------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--P~-~~  513 (721)
                      .++-..+     +.|       |..+.-.+.|++.|+|.=--+..-+|-|..+-+-.-+++|...|.|.|.|=  |+ .+
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d  548 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD  548 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence            1111111     122       333444578999999999999999999999999999999999999999974  34 56


Q ss_pred             HHHH-H--HHHHHhcCCHHHHHHHHHHHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc---
Q 004984          514 CLEL-R--FCFFLALEDYQAALCDVQAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV---  584 (721)
Q Consensus       514 ~~~~-R--~~~~~~lgd~eeAl~d~~kal~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~---  584 (721)
                      .|.. +  +......-..+.|...|++|++.-|--..   |.-..-....-|+.++...-++.|.--+...+++.-+   
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~  628 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY  628 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            6643 2  33345555789999999999999884321   2112222222234444433333332111111111000   


Q ss_pred             -----cccc---hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 004984          585 -----DDIG---SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC  654 (721)
Q Consensus       585 -----dd~~---al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~  654 (721)
                           .-+|   --..|++||+.=|.+-  +...+-|..-.++|..+.|..+|.-.-++-|-....-+.-.|--+...|=
T Consensus       629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG  708 (835)
T KOG2047|consen  629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG  708 (835)
T ss_pred             HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC
Confidence                 1112   2338999999977653  34566777888899999999999998888877777777777877666444


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHH
Q 004984          655 EEGLRKAEESIQMKRSFEAFFL  676 (721)
Q Consensus       655 deAl~~ye~Ai~i~~~~~a~~~  676 (721)
                      .|  .-|+.-+.|.+|.+|=|+
T Consensus       709 ne--dT~keMLRikRsvqa~yn  728 (835)
T KOG2047|consen  709 NE--DTYKEMLRIKRSVQATYN  728 (835)
T ss_pred             CH--HHHHHHHHHHHHHHHhhh
Confidence            43  357888888888886554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.51  E-value=0.032  Score=65.35  Aligned_cols=265  Identities=14%  Similarity=0.020  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHhc-----cchHHHHHHHHHHHh-------ccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcC
Q 004984          383 LLAFHQLGCVRLLR-----KEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSV  445 (721)
Q Consensus       383 ~la~~~lG~~~~~~-----g~y~eA~~~f~~AL~-------~~~~~A~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~  445 (721)
                      ..+.+.+|.++..-     .+.+.|+.+|..|.+       .++..|.+++|++|....     +...|...|.++.+..
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            45667777776654     689999999999888       577788999999998854     6778999999999988


Q ss_pred             CCcHHHHHHHhh-cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCHHHHH
Q 004984          446 TPLGWMYQERSL-YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----QNVEAALAEINRILGFKLALECLE  516 (721)
Q Consensus       446 ~~~~~ay~~rg~-~~----~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l----g~~~eAl~~~~kAL~l~P~~~~~~  516 (721)
                      .+.+..+...-. .+    ....|...|..|..  -.+..+++++|..|..-    .+...|...|.+|-+.+ .+.+.+
T Consensus       324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~  400 (552)
T KOG1550|consen  324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAY  400 (552)
T ss_pred             CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHH
Confidence            776666554421 11    23688888877764  56788999999888754    46889999999999887 455455


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHH
Q 004984          517 LRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ  595 (721)
Q Consensus       517 ~R~~~~~~-lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~q  595 (721)
                      .++.++.- .++++.+..-+....++.-......    +..+..    ...        ..+.......+...+...+.+
T Consensus       401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~----a~~l~~----~~~--------~~~~~~~~~~~~~~~~~~~~~  464 (552)
T KOG1550|consen  401 LLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN----AAYLLD----QSE--------EDLFSRGVISTLERAFSLYSR  464 (552)
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH----HHHHHH----hcc--------ccccccccccchhHHHHHHHH
Confidence            55543222 2888888877777766654432211    111100    000        011111001111212333333


Q ss_pred             HHHhCCCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHhc
Q 004984          596 MLESDAPKGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQM  667 (721)
Q Consensus       596 aL~l~P~~~~~~~~~g~~L~~l----g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~----G~~deAl~~ye~Ai~i  667 (721)
                      +  ...+++.+.+.+|.++..-    .+++-|...|.+|-.-.   +.+.+|+|+.+-.-    + +..|...|.+|.+.
T Consensus       465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE  538 (552)
T ss_pred             H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence            3  3467888888888888774    45889999999999888   99999999987543    4 78999999999887


Q ss_pred             CCCHH
Q 004984          668 KRSFE  672 (721)
Q Consensus       668 ~~~~~  672 (721)
                      +...-
T Consensus       539 ~~~~~  543 (552)
T KOG1550|consen  539 DSRAY  543 (552)
T ss_pred             Cchhh
Confidence            65543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.0015  Score=68.34  Aligned_cols=105  Identities=16%  Similarity=0.048  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984          515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY  594 (721)
Q Consensus       515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~  594 (721)
                      +|+.+.-+...|||.+|..-|..-+.--|+..                                                
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------------------------------------------------  175 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------------------------------------------------  175 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------------------------------------------------
Confidence            57777778899999999999999999999862                                                


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                             --+.++|.+|.+++.+|++++|...|..+.+-.|++   +|+++.+|.++.++|+-|+|=..|++.|+-=|..
T Consensus       176 -------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         176 -------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             -------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence                   235788999999999999999999999999988874   6889999999999999999999999999999988


Q ss_pred             HHH
Q 004984          672 EAF  674 (721)
Q Consensus       672 ~a~  674 (721)
                      ++=
T Consensus       249 ~aA  251 (262)
T COG1729         249 DAA  251 (262)
T ss_pred             HHH
Confidence            743

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.48  E-value=0.0018  Score=67.78  Aligned_cols=105  Identities=13%  Similarity=0.027  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      .++-|.-+...|+|.+|...|..=|.--|+    +.+++.+|-++..+|+|++|...|.++.+-.|+.            
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------  211 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------  211 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence            677788889999999999999999999895    5677888999999999999999999999988885            


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                                                                 |+-+++.+-+|.++.++|..++|-+.+++.+.--|+.
T Consensus       212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence                                                       6778899999999999999999999999999999987


Q ss_pred             hhHH
Q 004984          638 HERL  641 (721)
Q Consensus       638 ~ea~  641 (721)
                      .-|.
T Consensus       249 ~aA~  252 (262)
T COG1729         249 DAAK  252 (262)
T ss_pred             HHHH
Confidence            6554

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.48  E-value=5.2e-05  Score=77.89  Aligned_cols=57  Identities=26%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             eEEEeehhhhhcCCHHHHHhhcCCCCcCC---------cceEEeCCCCCCHHHHH-HHhhhhccCCCC
Q 004984          191 EKIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLR-IISDFSVTGSLN  248 (721)
Q Consensus       191 ~~~~aHr~vLAa~S~yF~amF~~~~~Es~---------~~~I~l~~~~is~~~~~-~lL~f~Ytg~l~  248 (721)
                      .+|+||+.|.|++|++||.++....+|..         ...|.+.+ -|=|.+|. .++.|+||++++
T Consensus       261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD  327 (401)
T KOG2838|consen  261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD  327 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence            47999999999999999999976554433         35677776 56677765 468999999887

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=97.47  E-value=0.00046  Score=60.53  Aligned_cols=80  Identities=25%  Similarity=0.404  Sum_probs=63.6

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHhhhh-----ccCC------CCC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG  249 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~is~~~~~~lL~f~-----Ytg~------l~~  249 (721)
                      |+++- +|.+|-..| -+|.-|+-.|+||.|...  |...++|.+++  |....++.+.+|+     ||+.      .+ 
T Consensus        19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~-   94 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFD-   94 (112)
T ss_pred             eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence            56665 455666555 468899999999998755  55568999996  9999999999987     5664      33 


Q ss_pred             CCHHHHHHHHHHhhhcCh
Q 004984          250 VTPNLLLEILIFANKFCC  267 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v  267 (721)
                      |+++.+++||.+|+++.+
T Consensus        95 IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   95 IPPEMALELLMAANYLEC  112 (112)
T ss_pred             CCHHHHHHHHHHhhhhcC
Confidence            789999999999999864

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0033  Score=69.87  Aligned_cols=277  Identities=18%  Similarity=0.142  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHh-c------c-------------chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN-A------G-------------HIYSIAGLARLGYIKGHKLWAYEKLNS  440 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~-~------~-------------~~~A~~~lg~~~~~~G~~~~A~~~~~~  440 (721)
                      ..-++++|+|+++++.|.|.-++.+|.+|+. .      +             .-...++.|..+...|++..|..+|.+
T Consensus       281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~  360 (696)
T KOG2471|consen  281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK  360 (696)
T ss_pred             hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence            3457789999999999999999999999995 1      1             122477899999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHhhcC---------------------------Ch--------------------------hHHHHH
Q 004984          441 VISSVTPLGWMYQERSLYC---------------------------EG--------------------------DKRWED  467 (721)
Q Consensus       441 aI~~~~~~~~ay~~rg~~~---------------------------~~--------------------------~eAl~d  467 (721)
                      ++..+..++..|...++.|                           ++                          +=|.-+
T Consensus       361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC  440 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC  440 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence            9999888888887764321                           00                          223345


Q ss_pred             HHHHHhcCCCCh--HHHHHHHHHHHhcCCHHHH------------HH-HHHHHHhcCCC-HHHHH--------HHHHHHH
Q 004984          468 LDKATALDPTLS--YPYMYRASSLMTKQNVEAA------------LA-EINRILGFKLA-LECLE--------LRFCFFL  523 (721)
Q Consensus       468 ~~kAieLdP~~~--~ay~~rg~~l~~lg~~~eA------------l~-~~~kAL~l~P~-~~~~~--------~R~~~~~  523 (721)
                      ++.||-|-|.-.  ....+.|..--+.|.-.|-            -. -+..+..-.|. .+.+.        +-+++-.
T Consensus       441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L  520 (696)
T KOG2471|consen  441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL  520 (696)
T ss_pred             HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            555555543210  0000011100011100000            00 00000000111 11111        1223445


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCc--hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH--HHHHH---
Q 004984          524 ALEDYQAALCDVQAILTLSPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL--SVIYQ---  595 (721)
Q Consensus       524 ~lgd~eeAl~d~~kal~L~P~~--~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al--~~~~q---  595 (721)
                      ++||.-.|+..-++.+.+..-.  .-+.|++=+...+.    ..++..+|-++.+-|..  ..++++ ..  .++++   
T Consensus       521 ~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~----lldr~seA~~HL~p~~~--~~~~f~~~~n~~Df~~~~~  594 (696)
T KOG2471|consen  521 ELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALC----LLDRPSEAGAHLSPYLL--GQDDFKLPYNQEDFDQWWK  594 (696)
T ss_pred             HhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH----HcCChhhhhhccChhhc--CCcccccccchhhhhhhhc
Confidence            5555555555555555543211  11233332222221    12222223222221111  112222 11  12322   


Q ss_pred             -----------HH-----HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHhcCCHHHH
Q 004984          596 -----------ML-----ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       596 -----------aL-----~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P--~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                                 .-     ..+..-...++|+|.++...|.++.|...+..|..+-|  .+.+|....-.+-+.+|+.+.|
T Consensus       595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~a  674 (696)
T KOG2471|consen  595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDA  674 (696)
T ss_pred             cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcch
Confidence                       11     22222335689999999999999999999999999999  7899999999999999999999


Q ss_pred             HHHHHH
Q 004984          658 LRKAEE  663 (721)
Q Consensus       658 l~~ye~  663 (721)
                      ++...|
T Consensus       675 l~~lk~  680 (696)
T KOG2471|consen  675 LARLKQ  680 (696)
T ss_pred             HHHHHh
Confidence            987765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.41  E-value=0.031  Score=58.24  Aligned_cols=201  Identities=14%  Similarity=0.082  Sum_probs=124.1

Q ss_pred             chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984          414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ  493 (721)
Q Consensus       414 ~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg  493 (721)
                      |+.-++.-|....+.|++.+|+..|++..+.+|..++.  ++                         +...++.+++..+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~q-------------------------a~l~l~yA~Yk~~   85 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQ-------------------------AQLDLAYAYYKNG   85 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HH-------------------------HHHHHHHHHHhcc
Confidence            44445555666678888888888888877777755544  22                         3345667888888


Q ss_pred             CHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 004984          494 NVEAALAEINRILGFKLA-L---ECLELRFCFFL--------ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV  561 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~--------~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l  561 (721)
                      ++++|+..+++=|.+.|+ +   ..++.+|..+.        ...--.+|+.+|+..++.=|+....   .-+......+
T Consensus        86 ~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---~dA~~~i~~~  162 (254)
T COG4105          86 EYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---PDAKARIVKL  162 (254)
T ss_pred             cHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---hhHHHHHHHH
Confidence            999999999999988884 2   23456775533        2333467888899999998885321   0111111111


Q ss_pred             HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---Ch
Q 004984          562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DH  638 (721)
Q Consensus       562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~  638 (721)
                      ...                         |+-.+-             ..|..+.+-|-+.+|+.-++..++--|+   -.
T Consensus       163 ~d~-------------------------LA~~Em-------------~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~  204 (254)
T COG4105         163 NDA-------------------------LAGHEM-------------AIARYYLKRGAYVAAINRFEEVLENYPDTSAVR  204 (254)
T ss_pred             HHH-------------------------HHHHHH-------------HHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence            111                         111111             2334556666666666666666665444   45


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~  683 (721)
                      +++..+..+++.+|-.++|= ...+.|..+...-.|.--+|.+..
T Consensus       205 eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~  248 (254)
T COG4105         205 EALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQ  248 (254)
T ss_pred             HHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhccc
Confidence            67777777788888888875 666777765544456666655543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0025  Score=65.46  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN  494 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~  494 (721)
                      ..++...|+-++.+|++.+|...|..||..-.+    ++-+-+-  ++.      .=++|+...+..+.|...++...|+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~----L~lkEkP--~e~------eW~eLdk~~tpLllNy~QC~L~~~e  245 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN----LQLKEKP--GEP------EWLELDKMITPLLLNYCQCLLKKEE  245 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH----HHhccCC--CCh------HHHHHHHhhhHHHHhHHHHHhhHHH
Confidence            455677888899999999999999988865311    0001000  011      1234455556788999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      |-|+++..+.+|...|. ..+++.||-++...=+.++|.+||.++++++|.-.
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            99999999999999996 78888999999999999999999999999999963

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.37  E-value=0.00028  Score=49.71  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      +++++++|.+++.+|++++|+..|++|++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            467888888888888888888888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.37  E-value=0.35  Score=53.16  Aligned_cols=287  Identities=15%  Similarity=0.104  Sum_probs=199.7

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc--cchhhHh--hHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHhh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIA--GLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSL  457 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~--~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~rg~  457 (721)
                      .-.|.+..-.|+-..|.+.=.++-++  .....+.  .-+..-..-|+++.|.+-|+..+ .+|.     +--.|.+-..
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHHHHhHHHHHHHHHh
Confidence            35688888889999998888776544  2222222  23556677899999999998544 3443     2344555445


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH------HHhcCCHH
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF------FLALEDYQ  529 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~-~~R~~~------~~~lgd~e  529 (721)
                      .|..+-|..+-++|-+..|....++...=....+.|+.++||.-.+...+-.- ..+.. ..|+.+      -.---|..
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            57779999999999999999999999998999999999999998876655322 11111 112211      22335688


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHH
Q 004984          530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYF  608 (721)
Q Consensus       530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~  608 (721)
                      .|..+-..+.+|.|++..+.      .........-                   ++.+ +-.+++.+...+|--..+  
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaa------v~AAralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia--  299 (531)
T COG3898         247 SARDDALEANKLAPDLVPAA------VVAARALFRD-------------------GNLRKGSKILETAWKAEPHPDIA--  299 (531)
T ss_pred             HHHHHHHHHhhcCCccchHH------HHHHHHHHhc-------------------cchhhhhhHHHHHHhcCCChHHH--
Confidence            99999999999999995421      1111011111                   2222 245789999998864332  


Q ss_pred             HHHHHHHHcCChHHHHHHHHHH---HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccC
Q 004984          609 RQSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS  685 (721)
Q Consensus       609 ~~g~~L~~lg~~eeAl~~~~~A---l~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~  685 (721)
                       +.++..+-|  +-++.-+++|   -.+.|+|.+........-++-|+|-.|-...|.++.+.|.=-+|.|.|-.=+-..
T Consensus       300 -~lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet  376 (531)
T COG3898         300 -LLYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET  376 (531)
T ss_pred             -HHHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence             222334444  3455555554   4568999999999999999999999999999999999999889988875543222


Q ss_pred             CCCCchhhHHHHHHHhhcCCCC
Q 004984          686 QDSSCSSTVVSLLEDALKCPSD  707 (721)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~  707 (721)
                      =|   --.|-+.|-.|+|-|-|
T Consensus       377 GD---qg~vR~wlAqav~APrd  395 (531)
T COG3898         377 GD---QGKVRQWLAQAVKAPRD  395 (531)
T ss_pred             Cc---hHHHHHHHHHHhcCCCC
Confidence            23   34799999999999977

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.33  E-value=0.05  Score=63.71  Aligned_cols=270  Identities=14%  Similarity=0.013  Sum_probs=175.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHh-----CCHHHHHHHHHHHHh-------c-----CCCcH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVIS-------S-----VTPLG  449 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~-----G~~~~A~~~~~~aI~-------~-----~~~~~  449 (721)
                      ...|......++..+|..+|+.+-+.++..+...+|.+++.-     .+.+.|+.++..+.+       .     .-.+|
T Consensus       216 ~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg  295 (552)
T KOG1550|consen  216 EGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG  295 (552)
T ss_pred             cccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence            344444445556789999999999999999999999877753     589999999999887       2     22478


Q ss_pred             HHHHHHhhcC--ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 004984          450 WMYQERSLYC--EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA  524 (721)
Q Consensus       450 ~ay~~rg~~~--~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~  524 (721)
                      .+|.+.....  ..+.|+..|.+|-++..  +.+.+.+|.++..-.   ++..|...|.+|...- ...+.+..+.+ ..
T Consensus       296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~-y~  371 (552)
T KOG1550|consen  296 RLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALC-YE  371 (552)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHH-HH
Confidence            8888774322  45889999999988754  567788888888766   5689999999999432 23433333333 33


Q ss_pred             cC-----CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH--HHHHH-
Q 004984          525 LE-----DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS--VIYQM-  596 (721)
Q Consensus       525 lg-----d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~--~~~qa-  596 (721)
                      +|     +.+.|...|.+|.+.++=..+  -+..+....+     +..++.+.. ...+.++-.++...+.+  +.++- 
T Consensus       372 ~G~gv~r~~~~A~~~~k~aA~~g~~~A~--~~~~~~~~~g-----~~~~~~~~~-~~~~~a~~g~~~~q~~a~~l~~~~~  443 (552)
T KOG1550|consen  372 LGLGVERNLELAFAYYKKAAEKGNPSAA--YLLGAFYEYG-----VGRYDTALA-LYLYLAELGYEVAQSNAAYLLDQSE  443 (552)
T ss_pred             hCCCcCCCHHHHHHHHHHHHHccChhhH--HHHHHHHHHc-----cccccHHHH-HHHHHHHhhhhHHhhHHHHHHHhcc
Confidence            34     899999999999999932211  1222222222     133333321 12222222222111011  11111 


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---C-CHHHHHHHHHHHHhcCCCHH
Q 004984          597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---S-HCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~---G-~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ..+.+..            .....+.|...+.++...  .+.+|...+|.+++.-   + +++.|...|.+|-...  -.
T Consensus       444 ~~~~~~~------------~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~  507 (552)
T KOG1550|consen  444 EDLFSRG------------VISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQ  507 (552)
T ss_pred             ccccccc------------cccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hH
Confidence            0000000            023566777777777654  4788999999999886   4 4999999999999888  55


Q ss_pred             HHHHHHHHhhcc
Q 004984          673 AFFLKAYALADS  684 (721)
Q Consensus       673 a~~~~~~~~~~~  684 (721)
                      +.|+-||-..=.
T Consensus       508 ~~~nlg~~~e~g  519 (552)
T KOG1550|consen  508 ALFNLGYMHEHG  519 (552)
T ss_pred             HHhhhhhHHhcC
Confidence            999999987643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.33  E-value=0.21  Score=54.77  Aligned_cols=248  Identities=13%  Similarity=0.068  Sum_probs=174.4

Q ss_pred             HHHHHhccchHHHHHHHHHHHhccchhhHhhHHH---HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----hhcCChh
Q 004984          390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR---LGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGD  462 (721)
Q Consensus       390 G~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~---~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~r----g~~~~~~  462 (721)
                      +..-..-|+|++|.+-|+.-+.-.... ..||-.   --..+|+.+.|..+-.++-+.-|.+.|+....    -.-|+.+
T Consensus       127 AQaal~eG~~~~Ar~kfeAMl~dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         127 AQAALLEGDYEDARKKFEAMLDDPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             HHHHHhcCchHHHHHHHHHHhcChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence            445556799999999999876543222 233322   23568999999999999999999999987543    3456779


Q ss_pred             HHHHHHHHHH---hcCCCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004984          463 KRWEDLDKAT---ALDPTLSY-----PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       463 eAl~d~~kAi---eLdP~~~~-----ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~  533 (721)
                      +|+.-.+...   .+.|+-++     .....+..+.+. +...|..+-..+++++|+ ......-+.++.+.|+..++-.
T Consensus       206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence            9988665433   34454332     222344444444 477899999999999998 4556666778899999999999


Q ss_pred             HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984          534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL  612 (721)
Q Consensus       534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~  612 (721)
                      -++.+.+.+|.-.-+                           .+|....+-|-.- -+.-..+--++-|++.+..+..+.
T Consensus       285 ilE~aWK~ePHP~ia---------------------------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~  337 (531)
T COG3898         285 ILETAWKAEPHPDIA---------------------------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE  337 (531)
T ss_pred             HHHHHHhcCCChHHH---------------------------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            999999999985221                           1222211111110 122234445678999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc
Q 004984          613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      .-+.-|.+-.|..-.+.+.+..|... ++.-++-| --.+|+-.+.-+..-|+++-
T Consensus       338 aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         338 AALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            99999999999999999999999965 44444444 34569999999999898874

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.028  Score=57.64  Aligned_cols=123  Identities=15%  Similarity=0.025  Sum_probs=90.9

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHH------HHhhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQ------ERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRAS  487 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~~~~ay~------~rg~~-----~~~~eAl~d~~kAieLdP~~------~~ay~~rg~  487 (721)
                      .++.+++.+|+.++.++|+++.+.|..-.      ..|.+     .+.+.||.+|++|-+--...      -..+...|.
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            46778999999999999998776554333      33433     23378888888887654332      245566777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          488 SLMTKQNVEAALAEINRILGFKLAL-------ECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       488 ~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      .-..+++|.+||..|.++.....+.       ..+.. -|.+++..+|.-.|-..+++-.+++|.+..
T Consensus       163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            7788999999999999998864431       22333 456888889999999999999999999854

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.30  E-value=0.014  Score=71.81  Aligned_cols=223  Identities=12%  Similarity=0.072  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--HHHHHH---HHHHHHhcCCHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA--LECLEL---RFCFFLALEDYQAALCDV  535 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~--~~~~~~---R~~~~~~lgd~eeAl~d~  535 (721)
                      .+-.+||++-+.-+|+.+..|++-=.-..+++..++|-+.+.|||. +|+.  .+.++.   .-.+-..-|.-+.-.+-|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            3445788888888888888888877788888888888888888886 5663  232222   222344456666666677


Q ss_pred             HHHHhhCCCchhhh------hhHH-HHHHHHHHHHhhhhhh-HHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--Ch
Q 004984          536 QAILTLSPDYRMFE------GRVA-ASQLHMLVREHIDNWT-IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KG  604 (721)
Q Consensus       536 ~kal~L~P~~~~~~------~~~~-a~~~~~~l~~~~~~~~-~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~--~~  604 (721)
                      ++|-+...-|.-+.      -+.+ ....-..++..+..+. +-..|....+.+-+.++.+ |-.++.+||..-|.  +.
T Consensus      1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            77776554432110      0000 0000001111111111 2233444444444444433 23355555555555  44


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHhh
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLKAYALA  682 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~--~~a~~~~~~~~~  682 (721)
                      +.----+.+-++.|+.+.+...+.--+.-.|.-.+.+...--.-.+.|+-+-.-..|||+|.+.=+  -.=||.|=|.-+
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence            444444455555555555555555555555555555555555555556666666666666665333  334444444443


Q ss_pred             cc
Q 004984          683 DS  684 (721)
Q Consensus       683 ~~  684 (721)
                      .+
T Consensus      1681 Ek 1682 (1710)
T KOG1070|consen 1681 EK 1682 (1710)
T ss_pred             HH
Confidence            33

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.019  Score=58.82  Aligned_cols=99  Identities=22%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             ccchHHHHHHHHHHHhc-----c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc---CChhHH
Q 004984          396 RKEYDEAEHLFEAAVNA-----G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CEGDKR  464 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~-----~---~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~---~~~~eA  464 (721)
                      .+.|+||.+.|.+|-..     +   -.+++...+..+.+.|...+|              |..|..-++.   .+.++|
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa--------------at~YveA~~cykk~~~~eA   92 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA--------------ATTYVEAANCYKKVDPEEA   92 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH--------------HHHHHHHHHHhhccChHHH
Confidence            35899999999887433     0   112222233334444433333              3344443322   233888


Q ss_pred             HHHHHHHHhcCCCCh------HHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 004984          465 WEDLDKATALDPTLS------YPYMYRASSLMTK-QNVEAALAEINRILGF  508 (721)
Q Consensus       465 l~d~~kAieLdP~~~------~ay~~rg~~l~~l-g~~~eAl~~~~kAL~l  508 (721)
                      +.++++||++-.+-.      ..++.+|.+|-.. .+++.||..|+.|-+.
T Consensus        93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            888888887543332      1222344444332 4455555555555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.24  E-value=0.079  Score=58.61  Aligned_cols=198  Identities=13%  Similarity=-0.092  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHH---hCCHHHHHHHHHH-HHhcCCCcHHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYI---KGHKLWAYEKLNS-VISSVTPLGWMY  452 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~---~G~~~~A~~~~~~-aI~~~~~~~~ay  452 (721)
                      ....+++=.+|-...+|+.=++..+..=.+      ++...-+..|.++.+   .|+.+.|+..+.. .....++.+.+|
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            344466667787888888777777753333      112222344555555   6777777777766 333445566666


Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 004984          453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL  532 (721)
Q Consensus       453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl  532 (721)
                      --.|.+        .-+..++-++++..             ..++|+..|.|+.+++|+.....|.+.++...|.-.+..
T Consensus       221 gL~GRI--------yKD~~~~s~~~d~~-------------~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  221 GLLGRI--------YKDLFLESNFTDRE-------------SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHH--------HHHHHHHcCccchH-------------HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence            666554        01112222222221             167777777777777776655666666666666433333


Q ss_pred             HHHHHHH-hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 004984          533 CDVQAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS  611 (721)
Q Consensus       533 ~d~~kal-~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g  611 (721)
                      ...+++. +++          ......+.+......|+-|                                     ..+
T Consensus       280 ~el~~i~~~l~----------~llg~kg~~~~~~dYWd~A-------------------------------------Tl~  312 (374)
T PF13281_consen  280 EELRKIGVKLS----------SLLGRKGSLEKMQDYWDVA-------------------------------------TLL  312 (374)
T ss_pred             HHHHHHHHHHH----------HHHHhhccccccccHHHHH-------------------------------------HHH
Confidence            2222222 110          0011122233333344444                                     244


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                      .+..-.|+++.|...+++++++.|..-+..-+.+.+.
T Consensus       313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~  349 (374)
T PF13281_consen  313 EASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK  349 (374)
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence            5556678888888888888888887766555555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.24  E-value=0.00061  Score=47.98  Aligned_cols=34  Identities=12%  Similarity=0.134  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                      +.+|+.+|.++..+|++++|+..+++|++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.081  Score=53.09  Aligned_cols=82  Identities=23%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      ++|...++.++..-.|.   +-+-.++|.++.++|++++|+..++..-  +++.  .....||.++...||-++|...|.
T Consensus       106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~  183 (207)
T COG2976         106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYE  183 (207)
T ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence            66666666666443332   2345678999999999999999998876  5553  335779999999999999999999


Q ss_pred             HHHhhCCCc
Q 004984          537 AILTLSPDY  545 (721)
Q Consensus       537 kal~L~P~~  545 (721)
                      ++++.+++.
T Consensus       184 kAl~~~~s~  192 (207)
T COG2976         184 KALESDASP  192 (207)
T ss_pred             HHHHccCCh
Confidence            999998775

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.075  Score=55.47  Aligned_cols=179  Identities=15%  Similarity=0.092  Sum_probs=139.8

Q ss_pred             chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-----CChhHHHHHHHHHH
Q 004984          398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-----CEGDKRWEDLDKAT  472 (721)
Q Consensus       398 ~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~-----~~~~eAl~d~~kAi  472 (721)
                      +|.++..+|+..|..+               ..-..|++....+|.++|.+-..|+-|-.+     .+..+-++.++..+
T Consensus        41 ~fr~~m~YfRAI~~~~---------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~  105 (318)
T KOG0530|consen   41 DFRDVMDYFRAIIAKN---------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII  105 (318)
T ss_pred             hHHHHHHHHHHHHhcc---------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4666666666554442               334556777788999999877777666332     22377788899999


Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVE-AALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG  550 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~-eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~  550 (721)
                      +-+|.+.+.|..|-.+.-.+|++. .=++...++|..+. +..+|..|-|+....++++.=+......|+.|--|     
T Consensus       106 e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N-----  180 (318)
T KOG0530|consen  106 EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN-----  180 (318)
T ss_pred             HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----
Confidence            999999999999999999999988 78899999998877 47888999999999999999999999999988644     


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch-------HHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS-------LSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a-------l~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                                          =.+|.+.|..+....+.-+       +...-.+|.+-|+|-.+|+.+.-++..
T Consensus       181 --------------------NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  181 --------------------NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             --------------------cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence                                1357777777777544432       346778899999999999988877775

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0014  Score=69.80  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRF-CFFLALEDYQAALCDVQ  536 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~-~~~~~lgd~eeAl~d~~  536 (721)
                      ..|...|++.|.-.-.+    +-.|.|||.+...+|+|..||.|..+|+.++|..-..+.|+ .++.++.++++|+.+++
T Consensus        98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~e  177 (390)
T KOG0551|consen   98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCE  177 (390)
T ss_pred             HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            55555555555543222    34578888888888888888888888888888755556665 48888888888888888


Q ss_pred             HHHhhCCCc
Q 004984          537 AILTLSPDY  545 (721)
Q Consensus       537 kal~L~P~~  545 (721)
                      ..+.++-..
T Consensus       178 e~~~~d~e~  186 (390)
T KOG0551|consen  178 EGLQIDDEA  186 (390)
T ss_pred             hhhhhhHHH
Confidence            877776554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.12  E-value=0.03  Score=63.07  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=15.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      +.+.-++|+.+||++.|+..++..|.
T Consensus       266 AmCarklGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  266 AMCARKLGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCc
Confidence            44555666666666666666665554

The molecular function of this protein is uncertain.

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00041  Score=74.30  Aligned_cols=120  Identities=21%  Similarity=0.145  Sum_probs=100.6

Q ss_pred             CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHH---HHHHHhhhcC
Q 004984          190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC  266 (721)
Q Consensus       190 ~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~---~LL~aAd~~~  266 (721)
                      +..+.+|+.+++++|+.|++|+..+..+.....+++.+  .++..++.+..|.|+..-. ...+.+.   .++.++.+++
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~  185 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK  185 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence            56699999999999999999999988777777778875  9999999999999997654 3444554   8889999999


Q ss_pred             hhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHh
Q 004984          267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR  313 (721)
Q Consensus       267 v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~  313 (721)
                      ...++..|...+.+.+. ..++..++..+..+....+...|..++..
T Consensus       186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  231 (297)
T KOG1987|consen  186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAA  231 (297)
T ss_pred             cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence            99999999999999985 56666777788877777888888877654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.024  Score=60.12  Aligned_cols=156  Identities=16%  Similarity=0.061  Sum_probs=100.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 004984          486 ASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH  564 (721)
Q Consensus       486 g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~  564 (721)
                      |.-.++.|++.+|...|..++...|+ .+.....+.+|...|+.++|..-+...-.-..+.        ...  + +...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~--~-l~a~  209 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAH--G-LQAQ  209 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHH--H-HHHH
Confidence            34455666677777777777777664 4444555666777777766655444322222221        000  0 1222


Q ss_pred             hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHH
Q 004984          565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLV  642 (721)
Q Consensus       565 ~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~  642 (721)
                      ++...+|          ...+   -...+.+.+..||++.++.+-.|..+...|++++|++.+=..++.+-.  +.++.-
T Consensus       210 i~ll~qa----------a~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk  276 (304)
T COG3118         210 IELLEQA----------AATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK  276 (304)
T ss_pred             HHHHHHH----------hcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence            2222333          1222   245789999999999999999999999999999999998888877554  556666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 004984          643 YEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       643 ~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      .+=.++.-.|.-|.+.-.|+|=+
T Consensus       277 ~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         277 TLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            66667777787777777777643

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.028  Score=60.30  Aligned_cols=185  Identities=11%  Similarity=-0.004  Sum_probs=133.7

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhH--hhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~--~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.-.+.+.++.++.-+..+.....-.|.-..+...+|++.+|...+++.++--|.+-.  -.--.+++..|+...-...+
T Consensus        81 s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai  160 (491)
T KOG2610|consen   81 SNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAI  160 (491)
T ss_pred             chhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHH
Confidence            3345556666666544444332333455566677889999999999999888666643  23345788889988888888


Q ss_pred             HHHHhc-CCCcHHHHHHHhh-------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          439 NSVISS-VTPLGWMYQERSL-------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL  510 (721)
Q Consensus       439 ~~aI~~-~~~~~~ay~~rg~-------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P  510 (721)
                      .+.|.. +++.+..-|-.|.       +|.+++|-+.-++|+++||.+..+....+-++.+.||+.|+.+...+--..=-
T Consensus       161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr  240 (491)
T KOG2610|consen  161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR  240 (491)
T ss_pred             HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence            888887 7776554444443       35669999999999999999999999999999999999999998877542211


Q ss_pred             C---HHH--HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCc
Q 004984          511 A---LEC--LELRFCFFLALEDYQAALCDVQAILT--LSPDY  545 (721)
Q Consensus       511 ~---~~~--~~~R~~~~~~lgd~eeAl~d~~kal~--L~P~~  545 (721)
                      +   ..+  |..-+.++++.+.|+.|+.-|++-+-  ++.++
T Consensus       241 ~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~D  282 (491)
T KOG2610|consen  241 QSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDD  282 (491)
T ss_pred             hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence            1   112  22356789999999999999987653  55555

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.0029  Score=67.50  Aligned_cols=75  Identities=23%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFK---LA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA  553 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~  553 (721)
                      +.-|..=|+=|+.-++|..|+..|.+.|+-+   |+  .-+|.||+.+...+|+|-.||.|+.+|+.++|.+.-++.|++
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            5677888999999999999999999999974   54  345778999999999999999999999999999966555554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.00  E-value=0.14  Score=61.07  Aligned_cols=217  Identities=12%  Similarity=-0.006  Sum_probs=139.5

Q ss_pred             hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHhhcCChhHHH
Q 004984          395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRW  465 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~-------~ay~~rg~~~~~~eAl  465 (721)
                      ..++++.|.+...+.++.  +-.+|...-|.++.++|+.++|...++..-...++.-       ..|...+.+   ++|.
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~---d~~~   97 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL---DEAV   97 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh---hHHH
Confidence            456788888888888877  4456667778889999999999977765545555433       233334444   9999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHhcCC---------HHHHHHH
Q 004984          466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LELRFCFFLALED---------YQAALCD  534 (721)
Q Consensus       466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~--~~~R~~~~~~lgd---------~eeAl~d  534 (721)
                      ..|++|+.-+|+ -+-.+.+-.+|.+-+.|.+--..-=+.-+.-|+...  |..--.+......         ..-|.++
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            999999999999 788888888888888876533332222234464222  2222222222222         2335667


Q ss_pred             HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH--HHHHHhCCCChhHHHHHHH
Q 004984          535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI--YQMLESDAPKGVLYFRQSL  612 (721)
Q Consensus       535 ~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~--~qaL~l~P~~~~~~~~~g~  612 (721)
                      +++.++.. ....   -.+-..+.-.+...+..|++|                  +.++  ..|=.+-+.+..+-+..+.
T Consensus       177 ~~~~l~~~-gk~~---s~aE~~Lyl~iL~~~~k~~ea------------------l~~l~~~la~~l~~~~~~l~~~~~d  234 (932)
T KOG2053|consen  177 VQKLLEKK-GKIE---SEAEIILYLLILELQGKYQEA------------------LEFLAITLAEKLTSANLYLENKKLD  234 (932)
T ss_pred             HHHHhccC-Cccc---hHHHHHHHHHHHHhcccHHHH------------------HHHHHHHHHHhccccchHHHHHHHH
Confidence            77777776 3211   111222333344555556666                  4433  4444555666666677788


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          613 LLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       613 ~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                      .+..++++.+=.+...+++.-+||+
T Consensus       235 llk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  235 LLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHhcChHHHHHHHHHHHHhCCcc
Confidence            8888999999999999999999998

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.98  E-value=0.069  Score=59.04  Aligned_cols=163  Identities=16%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             CchhHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHh---ccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQR-LLAFHQLGCVRLL---RKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLW  433 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~-~la~~~lG~~~~~---~g~y~eA~~~f~~AL~~~---~~~A~~~lg~~~~~~G~~~~  433 (721)
                      ..+..+.|.|.+...|.....+ ...-++.+.++-+   .|+.++|...+.+++...   ..+.+--+||+|-.+     
T Consensus       156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-----  230 (374)
T PF13281_consen  156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL-----  230 (374)
T ss_pred             hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-----
Confidence            4567777777766665332222 2333556666666   799999999999977762   344555677776522     


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004984          434 AYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL-------  506 (721)
Q Consensus       434 A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL-------  506 (721)
                             .++.......         ..++|+..|.|+.+++| +.++=.|.+.++.-.|...+.-.+.+++.       
T Consensus       231 -------~~~s~~~d~~---------~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll  293 (374)
T PF13281_consen  231 -------FLESNFTDRE---------SLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL  293 (374)
T ss_pred             -------HHHcCccchH---------HHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence                   1111111100         03999999999999996 55788889999998888666665555544       


Q ss_pred             h----cCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          507 G----FKLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       507 ~----l~P~~~~~~~--R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .    +.+..+.|..  ++.+..-.||+++|++.+++++++.|..
T Consensus       294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            1    1122344432  4567888999999999999999999886

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.85  E-value=0.0023  Score=48.47  Aligned_cols=41  Identities=10%  Similarity=-0.019  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      ++++..+|.++..+|++++|.+.|+++++.+|++. +++..|
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            46889999999999999999999999999999998 887765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.81  E-value=0.15  Score=60.24  Aligned_cols=141  Identities=12%  Similarity=-0.070  Sum_probs=70.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH----------hcCCCcHHHHHHH-
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI----------SSVTPLGWMYQER-  455 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI----------~~~~~~~~ay~~r-  455 (721)
                      -.+...|...|.+++|.+.-+.-=.+.-...|++.|.-+..+||...|++.|+++-          ..+|+.-.-|.++ 
T Consensus       830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~  909 (1416)
T KOG3617|consen  830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK  909 (1416)
T ss_pred             HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence            34455555566666665533321111112234555666666777777777776432          2234333333333 


Q ss_pred             ---------hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004984          456 ---------SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF  522 (721)
Q Consensus       456 ---------g~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~  522 (721)
                               |.|    |..+.|+..|.+|-.        |+.+--++.-+|+.++|-...+.    .-+-.+-|..+.-|
T Consensus       910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhlaR~Y  977 (1416)
T KOG3617|consen  910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLARMY  977 (1416)
T ss_pred             cchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHHHHh
Confidence                     222    344667766665532        44444455555555555433322    11222224455566


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 004984          523 LALEDYQAALCDVQAIL  539 (721)
Q Consensus       523 ~~lgd~eeAl~d~~kal  539 (721)
                      ...|++.+|+.-|.+|-
T Consensus       978 En~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  978 ENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            77777777776666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.74  E-value=0.039  Score=52.41  Aligned_cols=100  Identities=19%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~--------~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      ....|+...++..+.+++.++.        ...|+...|..+   .+.             ...+...++..+.+.|+++
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l---~~~-------------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL---REL-------------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH---HHH-------------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHhccCHH
Confidence            3445666666666666666542        124444444332   111             2345667788889999999


Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      +|+..+++++.++|- -..+...-.+|..+|+..+|++.|++..+
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999995 45555667789999999999999888754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.72  E-value=0.047  Score=51.87  Aligned_cols=61  Identities=26%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +...++..+...|++++|++.+++++.++|.+-.++..+-.++..+|+..+|+..|++..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4455777888999999999999999999999999999999999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.026  Score=58.73  Aligned_cols=137  Identities=13%  Similarity=0.047  Sum_probs=93.3

Q ss_pred             hHHHHHHHHH--HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc----CCC
Q 004984          377 ETDRQRLLAF--HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTP  447 (721)
Q Consensus       377 ~~~lq~~la~--~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~----~~~  447 (721)
                      ...|++....  |.+..++.-.|+|.-....+.+.|+.++   +....++|++..+-||.+.|-..|.+.-+.    +.-
T Consensus       169 v~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~  248 (366)
T KOG2796|consen  169 IRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL  248 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence            3455554333  5666667778999999999999998852   223567999999999999997777633321    111


Q ss_pred             cHHHHHHH--hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          448 LGWMYQER--SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE  513 (721)
Q Consensus       448 ~~~ay~~r--g~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~  513 (721)
                      -+.+...+  ..+    +.+.+|...|++.++.||.++.+-++.|.+++-+|+..+|+..+..+++..|.+.
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            11111111  110    2237777788888888888888888888888888888888888888888887643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.62  E-value=0.067  Score=49.50  Aligned_cols=105  Identities=20%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             HHHHHH--HHHHHhccchHHHHHHHHHHHhcc----------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 004984          384 LAFHQL--GCVRLLRKEYDEAEHLFEAAVNAG----------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP  447 (721)
Q Consensus       384 la~~~l--G~~~~~~g~y~eA~~~f~~AL~~~----------~----~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~  447 (721)
                      .+|.-|  |.-.++-|.|++|...+++|++..          |    +..+.+|+.++..+|++++++..-.+++.    
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~----   83 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR----   83 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence            344333  444556689999999999998761          1    22477889999999999999876544332    


Q ss_pred             cHHHHHHH-hhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          448 LGWMYQER-SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       448 ~~~ay~~r-g~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                          |+|| |.+.+-++.+.            ..+.++||.++..+|+.+||+..|+++-+.
T Consensus        84 ----YFNRRGEL~qdeGklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   84 ----YFNRRGELHQDEGKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             ----HHHHH--TTSTHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ----HHhhccccccccchhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                3332 44433333321            235578999999999999999999998753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.58  E-value=0.0032  Score=44.42  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ++++.+|.++..+|++++|+..|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3445555555555555555555555555554

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.49  E-value=0.0044  Score=43.65  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=30.8

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                      +.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3679999999999999999999999999999964

...

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=96.46  E-value=0.0022  Score=66.20  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=54.5

Q ss_pred             CCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC
Q 004984          178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN  248 (721)
Q Consensus       178 ~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~  248 (721)
                      .....||-++.....|++||.+||+++|+|+.+.+++-.-......++.--|++-++|..+|.|+|||+..
T Consensus       127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg  197 (401)
T KOG2838|consen  127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG  197 (401)
T ss_pred             eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc
Confidence            33446888888899999999999999999999988754222222222332369999999999999999876

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.46  E-value=0.2  Score=53.22  Aligned_cols=157  Identities=13%  Similarity=-0.037  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhc----cchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 004984          385 AFHQLGCVRLLR----KEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLG-WMYQER  455 (721)
Q Consensus       385 a~~~lG~~~~~~----g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~A~~~~~~aI~~~~~~~-~ay~~r  455 (721)
                      +...+|..+...    .+..+|..+|..+.+.++..+.+.+|.++..    ..|..+|..+|++|.......+ .+.+..
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l  154 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL  154 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            444555555443    4688999999999999999999999998876    4489999999999998855443 222222


Q ss_pred             hhc---C--------ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004984          456 SLY---C--------EGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFC  520 (721)
Q Consensus       456 g~~---~--------~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~  520 (721)
                      |..   +        ....|+..|.+|-++.  +..+..++|..|..    ..++++|+.-|.+|-+... ....++.+ 
T Consensus       155 ~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-  230 (292)
T COG0790         155 GLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-  230 (292)
T ss_pred             HHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-
Confidence            210   1        1247888999998888  88999999988865    3478999999999998877 55556666 


Q ss_pred             HHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 004984          521 FFLALE---------------DYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       521 ~~~~lg---------------d~eeAl~d~~kal~L~P~~  545 (721)
                      ++...|               +...|...++++-...+..
T Consensus       231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence            444444               8889999999998888775

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.36  E-value=1  Score=47.70  Aligned_cols=206  Identities=12%  Similarity=0.013  Sum_probs=123.8

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHH
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED  467 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d  467 (721)
                      ..+......+.+..|...|.++-..+...+...+|..+..-..                          ......+|+..
T Consensus        46 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~g--------------------------v~~~~~~A~~~   99 (292)
T COG0790          46 LNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKG--------------------------VSRDKTKAADW   99 (292)
T ss_pred             cccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccC--------------------------ccccHHHHHHH
Confidence            3444555677888888888887665444444444443332111                          01112556666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          468 LDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-AL-ECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P-~~-~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      |.  ...+..++.+.+++|.+|..    ..++.+|...|++|....- .. ...+..+..+..-+ .+         ...
T Consensus       100 ~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~---------~~~  167 (292)
T COG0790         100 YR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA---------LAV  167 (292)
T ss_pred             HH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh---------hcc
Confidence            65  33455666777778887776    4477788888888876532 21 22333444333221 00         000


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----c
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----L  617 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----l  617 (721)
                      ..+                       ...                  |+..+.+|-+..  ++.+.++.|.++..    -
T Consensus       168 ~~~-----------------------~~~------------------A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         168 AYD-----------------------DKK------------------ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cHH-----------------------HHh------------------HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence            000                       001                  233444444443  67778888877755    3


Q ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---------------HCEEGLRKAEESIQMKRSFEAFFLK  677 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G---------------~~deAl~~ye~Ai~i~~~~~a~~~~  677 (721)
                      .++++|..+|++|-+...  ..+.++.| ++|..|               +...|...+.++....+...-.-++
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR  276 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            477899999999999997  89999999 888877               7777888888887776665533333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.72  Score=48.50  Aligned_cols=159  Identities=11%  Similarity=0.006  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHhhc-
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSLY-  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-----~~~ay~~rg~~-  458 (721)
                      ..-.-|.++..-|++++|.+...+-   ....+...--.+..+..+.+-|.....+...++-+     ++.+|.+..-- 
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence            3344578888999999998877651   22333333344677778888888888888777653     77888877321 


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH-HH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD-VQ  536 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d-~~  536 (721)
                      ...++|.-.|+.--+--|-.+...+..+.+.+.+||++||...+..||.-+++ |+.+.|.-.+-..+|.-.++... ..
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            23488998999998877778889999999999999999999999999999996 88888887776777777666655 45


Q ss_pred             HHHhhCCCch
Q 004984          537 AILTLSPDYR  546 (721)
Q Consensus       537 kal~L~P~~~  546 (721)
                      +....+|.++
T Consensus       267 QLk~~~p~h~  276 (299)
T KOG3081|consen  267 QLKLSHPEHP  276 (299)
T ss_pred             HHHhcCCcch
Confidence            6666778874

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.31  E-value=0.56  Score=50.77  Aligned_cols=171  Identities=12%  Similarity=0.051  Sum_probs=109.1

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhh
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMF  548 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-----~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~  548 (721)
                      .......|...+.+....|+++-|...+.++..+++     .+......+-++-..|+..+|+...+..+.-.... ...
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            777788999999999999999999999999998763     23444556778889999999999999999832221 000


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA  622 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee  622 (721)
                      ........  +.+.    .          ++.         ...-..--......+.++..+|.-...+      +..++
T Consensus       222 ~~~~~~~~--~~~~----~----------~~~---------~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~  276 (352)
T PF02259_consen  222 ISNAELKS--GLLE----S----------LEV---------ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE  276 (352)
T ss_pred             ccHHHHhh--cccc----c----------ccc---------ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence            00000000  0000    0          000         0000000001111235566677777777      88889


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHC-----------------EEGLRKAEESIQMKRS  670 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~-----------------deAl~~ye~Ai~i~~~  670 (721)
                      ++..|+.|+.++|+...+++..|......-..                 ..|+..|=+|+.+.+.
T Consensus       277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999998888888876655322                 2366666666666665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.51  Score=49.03  Aligned_cols=159  Identities=14%  Similarity=0.001  Sum_probs=78.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC-----CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhhhhhHHHHH
Q 004984          486 ASSLMTKQNVEAALAEINRILGFK-----LALEC-LELRFCFFLALEDYQAALCDVQAILTLSPDY---RMFEGRVAASQ  556 (721)
Q Consensus       486 g~~l~~lg~~~eAl~~~~kAL~l~-----P~~~~-~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~---~~~~~~~~a~~  556 (721)
                      |..+.++..+.|+...|+||..+.     |++.+ ..-++.=..+.-+.++|+.-|++++.+=-+.   .|++   ....
T Consensus        78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---el~g  154 (308)
T KOG1585|consen   78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---ELYG  154 (308)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---HHHH
Confidence            445555666666666666666552     33211 1224444456667778888888877753322   1111   1112


Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 004984          557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---  633 (721)
Q Consensus       557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---  633 (721)
                      ..+.+.-.++.+++|..   .+.+         ......-+..-|....++...-++++-.+++..|...|+.--++   
T Consensus       155 k~sr~lVrl~kf~Eaa~---a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f  222 (308)
T KOG1585|consen  155 KCSRVLVRLEKFTEAAT---AFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF  222 (308)
T ss_pred             HhhhHhhhhHHhhHHHH---HHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence            22223333444444421   1111         11222233333444445544445555566888888888875443   


Q ss_pred             -CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          634 -AASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       634 -~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                       .|++..++-++ +--|+.|+.|+.-..
T Consensus       223 ~~sed~r~lenL-L~ayd~gD~E~~~kv  249 (308)
T KOG1585|consen  223 LKSEDSRSLENL-LTAYDEGDIEEIKKV  249 (308)
T ss_pred             cChHHHHHHHHH-HHHhccCCHHHHHHH
Confidence             34444444333 335777887776543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.25  E-value=0.32  Score=56.78  Aligned_cols=66  Identities=24%  Similarity=0.269  Sum_probs=47.4

Q ss_pred             HHHHcCChHHHHHH------HHHHHH-----hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------C
Q 004984          613 LLLRLNCPEAAMRS------LQLARQ-----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-----------S  670 (721)
Q Consensus       613 ~L~~lg~~eeAl~~------~~~Al~-----l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~-----------~  670 (721)
                      +|-+.|-.++|+..      |+-|..     ..-..++.|..++.-|-+.|++++|-..|-+||+++-           .
T Consensus       959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsr 1038 (1636)
T KOG3616|consen  959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSR 1038 (1636)
T ss_pred             HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccch
Confidence            34446666666643      222322     2345788999999999999999999999999999863           3


Q ss_pred             HHHHHHHH
Q 004984          671 FEAFFLKA  678 (721)
Q Consensus       671 ~~a~~~~~  678 (721)
                      |++-|+|+
T Consensus      1039 fd~e~ir~ 1046 (1636)
T KOG3616|consen 1039 FDAEFIRA 1046 (1636)
T ss_pred             hhHHHHHc
Confidence            56767765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.22  E-value=0.6  Score=58.33  Aligned_cols=235  Identities=13%  Similarity=0.079  Sum_probs=175.7

Q ss_pred             chHHHHHHHHHHHhccchhhHhhHH--HHHHHhCCHHHHHHHHHHHHhc-CC-------CcHHHHHHHhh-cCChhHHHH
Q 004984          398 EYDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKGHKLWAYEKLNSVISS-VT-------PLGWMYQERSL-YCEGDKRWE  466 (721)
Q Consensus       398 ~y~eA~~~f~~AL~~~~~~A~~~lg--~~~~~~G~~~~A~~~~~~aI~~-~~-------~~~~ay~~rg~-~~~~~eAl~  466 (721)
                      +-.+-.++|++-+.-.|..+...+-  --+.++++.++|.+...+|+.- ++       |...||.|.-. ||..+.-.+
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            3444567898888777766644332  2356789999999999998863 33       45677888744 554556667


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      -|++|-+.+-- .-.|..+.-+|..-+++++|.+.++..++ +.-....|...+.+++...+-++|-.-+.+|++--|..
T Consensus      1519 VFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            89999886543 34778899999999999999999999997 44346778778889999999999999999999999983


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                                       .+++...+.   +++-.+....++  .-..++--|.-.|.-.++|.-....-.+.|..+-+..
T Consensus      1598 -----------------eHv~~Iskf---AqLEFk~GDaeR--GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1598 -----------------EHVEFISKF---AQLEFKYGDAER--GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred             -----------------hhHHHHHHH---HHHHhhcCCchh--hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence                             344555554   244444333333  4668999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChh-HHHHHHHHHHhcCCHH
Q 004984          626 SLQLARQHAASDHE-RLVYEGWILYDTSHCE  655 (721)
Q Consensus       626 ~~~~Al~l~P~~~e-a~~~~G~~Ly~~G~~d  655 (721)
                      .|+|++.+.=.=.. -.++.=|+-|...+=+
T Consensus      1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             HHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence            99999988754333 3455667766654333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.14  Score=55.21  Aligned_cols=84  Identities=14%  Similarity=0.034  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHH-HHHH---HHHHhcCCHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLALECL-ELRF---CFFLALEDYQAALCDVQ  536 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-~P~~~~~-~~R~---~~~~~lgd~eeAl~d~~  536 (721)
                      -+|-...+|.+.--|++--++..--.++.-.|+...-...++|+|-. +|+.+++ |..|   ..+.+.|-|++|...-+
T Consensus       120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~  199 (491)
T KOG2610|consen  120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD  199 (491)
T ss_pred             cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence            77777788888888999888888888888889999999999999987 7775444 3333   46788888888888888


Q ss_pred             HHHhhCCCc
Q 004984          537 AILTLSPDY  545 (721)
Q Consensus       537 kal~L~P~~  545 (721)
                      +++++||.+
T Consensus       200 ralqiN~~D  208 (491)
T KOG2610|consen  200 RALQINRFD  208 (491)
T ss_pred             hhccCCCcc
Confidence            888888776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.18  E-value=0.11  Score=59.70  Aligned_cols=116  Identities=15%  Similarity=0.002  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHH
Q 004984          429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALA  500 (721)
Q Consensus       429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~----~~ay~~rg~~l~~lg~~~eAl~  500 (721)
                      ++...|.+.+....+.+|+.+..+..+|++    ++.++|++.|++|++...+.    ...+..+|..++-++++++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            455566677777777777776666666653    44577777777777544333    3467779999999999999999


Q ss_pred             HHHHHHhcCCCHH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC
Q 004984          501 EINRILGFKLALE--CLELRFCFFLALEDY-------QAALCDVQAILTLSPD  544 (721)
Q Consensus       501 ~~~kAL~l~P~~~--~~~~R~~~~~~lgd~-------eeAl~d~~kal~L~P~  544 (721)
                      .|.+.++.+.-..  ..|..|.++..+|+.       ++|...|+++..+-..
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            9999998766433  345688899999999       8888888888776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.14  E-value=0.37  Score=57.11  Aligned_cols=55  Identities=9%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      ||.+-.++.-+|+.++|-++.+     ...|--|-|.+|--|-..|++.+|+..|.||-+
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            4555555555666665544333     345666889999999999999999999888744

>smart00028 TPR Tetratricopeptide repeats

Probab=96.08  E-value=0.0078  Score=39.84  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      .+++.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45667777777777777777777777777665

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.98  E-value=1.9  Score=46.53  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=99.9

Q ss_pred             hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-CC-----
Q 004984          567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDA----PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AA-----  635 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P----~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-~P-----  635 (721)
                      ..+.+.+|++....-...+.+. |...+.++...++    ..+...+-.+.++...|+.++|+..++..+.. ..     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3444556666666555556565 5667888877652    25677888999999999999999999999881 11     


Q ss_pred             ----------------------------CChhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984          636 ----------------------------SDHERLVYEGWILYDT------SHCEEGLRKAEESIQMKRSFE-AFFLKAYA  680 (721)
Q Consensus       636 ----------------------------~~~ea~~~~G~~Ly~~------G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~  680 (721)
                                                  .-+.++.-+|.....+      +..++++..|.+|++++|+.+ +|+.-|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        1234566666666677      999999999999999999888 88776654


Q ss_pred             hhcc-CCCCCch-----hhHHHHHHHhhcCCCCccccccc
Q 004984          681 LADS-SQDSSCS-----STVVSLLEDALKCPSDRLRKGTE  714 (721)
Q Consensus       681 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  714 (721)
                      ...- ..|+...     ....+.+..|++|=--.|+-|..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            4322 2222111     25666666666665444555543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>smart00512 Skp1 Found in Skp1 protein family

Probab=95.94  E-value=0.027  Score=50.90  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=60.8

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHhhhhccCCCC-------------
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN-------------  248 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~-------------  248 (721)
                      |+|+- +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+  +|+..+|+.+++|++...-.             
T Consensus         4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w   80 (104)
T smart00512        4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW   80 (104)
T ss_pred             EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence            56655 788999999966 68999999997643222 22578888  59999999999999853211             


Q ss_pred             -----CCCHHHHHHHHHHhhhcCh
Q 004984          249 -----GVTPNLLLEILIFANKFCC  267 (721)
Q Consensus       249 -----~i~~~~v~~LL~aAd~~~v  267 (721)
                           .++.+.+.+|+.||+++++
T Consensus        81 D~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       81 DAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Confidence                 0445678999999998875

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.92  E-value=0.66  Score=53.32  Aligned_cols=161  Identities=15%  Similarity=0.119  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      +.|.+.+....+.-|+.+......|-++...|+.++|++.|++++....+ .    -+++-++|++.-++||++|...|.
T Consensus       250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~  329 (468)
T PF10300_consen  250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL  329 (468)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence            55666666777777777777777777777777777777777777743332 1    123446666777777777766666


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      +..+.+.-.                                                         .+-+.+..|.++..
T Consensus       330 ~L~~~s~WS---------------------------------------------------------ka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  330 RLLKESKWS---------------------------------------------------------KAFYAYLAAACLLM  352 (468)
T ss_pred             HHHhccccH---------------------------------------------------------HHHHHHHHHHHHHh
Confidence            666543221                                                         23445667778888


Q ss_pred             cCCh-------HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984          617 LNCP-------EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA  682 (721)
Q Consensus       617 lg~~-------eeAl~~~~~Al~l~P~------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~  682 (721)
                      +|+.       ++|...++++-.+...      -.|.+..+=.-.|....-    ..+-.++-.-|-.| .|+--|+-..
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~----~~~~d~~~~~p~~El~y~WNg~~~~  428 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAK----VDLVDAILVLPALELMYFWNGFPRM  428 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCC----CcchhhhhcCHHHHHHHHHhccccC
Confidence            8888       7777777776655432      223333332222222111    12222666777777 7777777554


Q ss_pred             c
Q 004984          683 D  683 (721)
Q Consensus       683 ~  683 (721)
                      .
T Consensus       429 ~  429 (468)
T PF10300_consen  429 P  429 (468)
T ss_pred             C
Confidence            4

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10941 hypothetical protein; Provisional

Probab=95.88  E-value=0.058  Score=57.32  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      -..|+=.+|++.++++.|+...++.+.++|+ +..+.-||.+|.++|.+..|+.|++.-++..|+...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            4566778899999999999999999999996 777788999999999999999999999999999843

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=95.86  E-value=0.0096  Score=63.79  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=74.8

Q ss_pred             eEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHHHhhhcChhh
Q 004984          191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER  269 (721)
Q Consensus       191 ~~~~aHr~vLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~aAd~~~v~~  269 (721)
                      +.|.|.+..|-..=.||+..+.....++ ..++|+|+- .-+-.+|+=|++|+....-. ++++||..||.-+++++|+.
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~   91 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES   91 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence            5799999999999999999996522222 224566653 47889999999999997666 99999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 004984          270 LKDACDRKLASLV  282 (721)
Q Consensus       270 L~~~C~~~L~~~l  282 (721)
                      |++.|-.|+..++
T Consensus        92 Lve~cl~y~~~~~  104 (317)
T PF11822_consen   92 LVEECLQYCHDHM  104 (317)
T ss_pred             HHHHHHHHHHHhH
Confidence            9999999987665

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PRK10941 hypothetical protein; Provisional

Probab=95.85  E-value=0.055  Score=57.48  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI  647 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~  647 (721)
                      |+.+.+++|.++|.++.-+--||.++.++||+..|..+++.-++..|+++.+..-+-++
T Consensus       200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            38889999999999998888899999999999999999999999999988876655444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.83  E-value=0.041  Score=43.76  Aligned_cols=45  Identities=29%  Similarity=0.434  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE  563 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~  563 (721)
                      ++++..+..+.++|+|++|.+..+++++++|+|.      .+..+...++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHH
Confidence            4678888899999999999999999999999983      34454444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.82  E-value=0.011  Score=41.09  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      +|++++|++++.+|++++|+..|++.++.-|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            57888888888888888888888888888775

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.80  E-value=0.34  Score=54.89  Aligned_cols=59  Identities=14%  Similarity=-0.013  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLALE---CLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~---~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      -..+|.+..++|+.+|||..++..++..|..+   ..+++..+++.+++|.++-+-+.|--.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            34478888999999999999999998877533   345566789999999999888777543

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.19  Score=53.53  Aligned_cols=125  Identities=19%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHH-hhcCC--h
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQER-SLYCE--G  461 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~~r-g~~~~--~  461 (721)
                      .-+.-....|++.+|...|..|+..  +...+..++++++...|+.+.|...+...=...... +.....+ ..+.+  .
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            4455667889999999999999988  346678899999999999999877766321111111 1111111 11100  0


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL  512 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~  512 (721)
                      -.-+.++.+.+.-||++.++-+.+|..+...|++++|++.+=..+.-+-+.
T Consensus       219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            111357889999999999999999999999999999999999888776653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.9  Score=50.41  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHH------cCC------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      +...+.+|..++.|-.+|++|..+|-.      -|.      ...-+.....|+--+|+|..+++|.=|.+-..-+.+  
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~~~~~~--  246 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGRGMRRE--  246 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhccccccc--
Confidence            667899999999999999999999884      231      234567788999999999999999888887754444  


Q ss_pred             HHHHHHH----HhcCCCHH--HHHHHHHHhhccCCCCCchh
Q 004984          658 LRKAEES----IQMKRSFE--AFFLKAYALADSSQDSSCSS  692 (721)
Q Consensus       658 l~~ye~A----i~i~~~~~--a~~~~~~~~~~~~~~~~~~~  692 (721)
                        .|..+    ++++=++.  -++-....+.-+.++.|...
T Consensus       247 --~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~  285 (421)
T KOG0529|consen  247 --CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET  285 (421)
T ss_pred             --ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence              34333    33333333  45555555555555555544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=2.8  Score=47.50  Aligned_cols=194  Identities=14%  Similarity=0.061  Sum_probs=126.3

Q ss_pred             hccchHHHHHHHHHHHhc----cchh------h------HhhHHHHHHHhCCHHHHHHHHHHHHhc---CCC-------c
Q 004984          395 LRKEYDEAEHLFEAAVNA----GHIY------S------IAGLARLGYIKGHKLWAYEKLNSVISS---VTP-------L  448 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~----~~~~------A------~~~lg~~~~~~G~~~~A~~~~~~aI~~---~~~-------~  448 (721)
                      ..|-|++|+++=++||..    ...+      .      +-.+.-+..-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            456788888887888765    1111      1      223444666789999998776655543   232       3


Q ss_pred             HHHHHHHhhcC----ChhHHHHHHHHHHhcCCC-C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC------H--
Q 004984          449 GWMYQERSLYC----EGDKRWEDLDKATALDPT-L--SYPYMYRASSLMTKQNVEAALAEINRILG-FKLA------L--  512 (721)
Q Consensus       449 ~~ay~~rg~~~----~~~eAl~d~~kAieLdP~-~--~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-l~P~------~--  512 (721)
                      +..++-+|.|+    .+++|-..|..|+.+--. +  +..-.|+|.+|.+.|+-    +++-++++ +.|.      .  
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCcchHHH
Confidence            45566677763    448888888888776332 2  45556688889887763    34444444 2342      1  


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984          513 ---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS  589 (721)
Q Consensus       513 ---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a  589 (721)
                         ..++.+|.+....+++.||.+-.++.+++.  +.+-.+|..+.                                  
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~----------------------------------  486 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC----------------------------------  486 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH----------------------------------
Confidence               124567777888899999999888888877  32222222222                                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                                      ...-+|.+..-+|+..|++...+-|+.+...-+|..+.+
T Consensus       487 ----------------~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL  525 (629)
T KOG2300|consen  487 ----------------SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL  525 (629)
T ss_pred             ----------------HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence                            233477888889999999999999999987777665443

>smart00028 TPR Tetratricopeptide repeats

Probab=95.51  E-value=0.021  Score=37.67  Aligned_cols=31  Identities=10%  Similarity=0.100  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKL  510 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P  510 (721)
                      .+|.++|.+++.+|++++|+..|+++++++|
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3566666666666666666666666666655

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.47  E-value=0.71  Score=46.50  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHH--HHHHHHHHh
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECL--ELRFCFFLA  524 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~--~~R~~~~~~  524 (721)
                      ||-|.+.-......+|-..|.+++..-              . .+.. +.+....+-+.-+|..  ..+  .-.+-.+.+
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~--------------~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve  101 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAV--------------Q-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVE  101 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------h-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence            455555544433356666666665421              1 1111 3444444444444431  111  113445677


Q ss_pred             cCCHHHHHHHHHHHHhhC
Q 004984          525 LEDYQAALCDVQAILTLS  542 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~  542 (721)
                      .|++++|+.-++.++..-
T Consensus       102 ~~~~d~A~aqL~~~l~~t  119 (207)
T COG2976         102 ANNLDKAEAQLKQALAQT  119 (207)
T ss_pred             hccHHHHHHHHHHHHccc
Confidence            777777777777776543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.36  E-value=0.072  Score=48.72  Aligned_cols=87  Identities=18%  Similarity=0.119  Sum_probs=47.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhcCC---------------hhHHHHHHHHHHhcCCCChHHHH
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTPLG---WMYQERSLYCE---------------GDKRWEDLDKATALDPTLSYPYM  483 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~~~---~ay~~rg~~~~---------------~~eAl~d~~kAieLdP~~~~ay~  483 (721)
                      +..++.+|++-+|++.++..|..+++..   ..+..+|..+.               .-.++++|.+++.|.|+.+...+
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            4455666666666666666666665443   23333343210               04455666666666666655555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          484 YRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       484 ~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                      .+|.=+---.-|++++....++|.+
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            5555544444555555555555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.35  E-value=0.098  Score=46.24  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 004984          463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLEL-RFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~--~~~~~-R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      ..++.++++++.+|++..+.+.+|..++..|++++|++.+-.++.-++++  +.... .-.++..+|.-+.....|++-+
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999864  32222 2346677777666666666544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.34  E-value=8.2  Score=47.39  Aligned_cols=187  Identities=13%  Similarity=0.021  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhhh--hhH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL--SPDYRMFE--GRV  552 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L--~P~~~~~~--~~~  552 (721)
                      +-+..|..+|.+..+.|...+||+.|=||=  +|+  .+...-.+-.+.|.|++-++.+.-|.+-  .|. ....  ---
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHH
Confidence            346789999999999999999999998875  554  3344445667889999999999888773  233 2100  000


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                      +-...++.++....-..-|+ .-+++|+.-+-+-++|...+.-.+.       -|-.++..|..+|.++.|....|+|-.
T Consensus      1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            11122233333333334443 2355666555555555554444443       378899999999999999999988744


Q ss_pred             hCC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004984          633 HAA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL  676 (721)
Q Consensus       633 l~P-------------------------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~  676 (721)
                      ...                         -+++-+--+-..+.+-|.|+|-+...|-++.+.|---.+|-
T Consensus      1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred             hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence            322                         12333334444556679999999999999999887775554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.30  E-value=4.9  Score=42.78  Aligned_cols=99  Identities=15%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcc-chHHHHHHHHHHHhc----cc-----hh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 004984          383 LLAFHQLGCVRLLRK-EYDEAEHLFEAAVNA----GH-----IY-------SIAGLARLGYIKGHKLWAYEKLNSVISSV  445 (721)
Q Consensus       383 ~la~~~lG~~~~~~g-~y~eA~~~f~~AL~~----~~-----~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~  445 (721)
                      ...+|+.|......+ ++++|..++++|.++    +.     .+       .+..+++++...+.++.            
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~------------  102 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYES------------  102 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHH------------
Confidence            466799999999999 999999999999877    11     11       12223333333333322            


Q ss_pred             CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                                     .++|+...+-+-.--|+.+..+.-.=.++...++.+++.+.+.++|.-
T Consensus       103 ---------------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  103 ---------------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             ---------------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence                           244555555556666776666644444444478888888888888864

It is also involved in sporulation [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.27  E-value=0.31  Score=45.20  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGF-------KLAL-ECL----ELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-------~P~~-~~~----~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      +..|..++.++..+|+|+|++..-++||.+       +.+- ..|    +.|+.++..+|+.++|+..|+.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            567788999999999999999988888853       4442 223    46889999999999999999998774

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=95.25  E-value=0.18  Score=54.35  Aligned_cols=191  Identities=16%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      +|||.-=.-...|-|+.+++..-.+.++....+...=+..=-..|-+.-+-....+|+.       .++++.-+++|+..
T Consensus       213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~  285 (415)
T COG4941         213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS  285 (415)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence            88888777788999999999998888877554433211111111111111122344544       35666677777765


Q ss_pred             C-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          542 S-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       542 ~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      . |.-  |       +++..+..         ||...-  ...-.|-..+.-++++|+.--.++..-.|++.++.+.-=+
T Consensus       286 ~~pGP--Y-------qlqAAIaa---------~HA~a~--~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp  345 (415)
T COG4941         286 RRPGP--Y-------QLQAAIAA---------LHARAR--RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP  345 (415)
T ss_pred             CCCCh--H-------HHHHHHHH---------HHHhhc--ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence            4 332  1       12111111         111110  0011222245556666777666778888999999999999


Q ss_pred             HHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984          621 EAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY  679 (721)
Q Consensus       621 eeAl~~~~~Al~l--~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~  679 (721)
                      +.++...+...+-  -..++..+-.+|-.|-++|+.+||-..|++||++-++-. .=|++..
T Consensus       346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r  407 (415)
T COG4941         346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR  407 (415)
T ss_pred             HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            9999998877766  556788889999999999999999999999999988876 5555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.24  E-value=0.027  Score=40.69  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          640 RLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       640 a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      ++.++|.++..+|++++|+..|++|+.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999977653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.11  E-value=9.9  Score=45.22  Aligned_cols=304  Identities=19%  Similarity=0.116  Sum_probs=184.0

Q ss_pred             hHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHhcc--ch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 004984          377 ETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAG--HI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP  447 (721)
Q Consensus       377 ~~~lq~~la~~~lG~~~~-~~g~y~eA~~~f~~AL~~~--~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~  447 (721)
                      ..+.+++.....+|.++. ...++++|+.+.++|+.+.  +.      .+..-+++++.+.|... |....+++|+...+
T Consensus        53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            444567888889999988 7899999999999998883  21      12345788999999888 99999999997543


Q ss_pred             ---cHHHHHHH------hh-cCChhHHHHHHHHHHhcC--CCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004984          448 ---LGWMYQER------SL-YCEGDKRWEDLDKATALD--PTLSYPYM----YRASSLMTKQNVEAALAEINRILGF---  508 (721)
Q Consensus       448 ---~~~ay~~r------g~-~~~~~eAl~d~~kAieLd--P~~~~ay~----~rg~~l~~lg~~~eAl~~~~kAL~l---  508 (721)
                         .+|.|.=|      .. .++...|++.+++...+.  +.+...+.    ..|.+....+..+++++..++++..   
T Consensus       132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~  211 (608)
T PF10345_consen  132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS  211 (608)
T ss_pred             cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence               45555333      11 146688999998888876  45544433    3688888889899999999988442   


Q ss_pred             ---CCC-----HHHHHH--HHHHHHhcCCHHHHHHHH---HHHHh---hCC-------C-------------------ch
Q 004984          509 ---KLA-----LECLEL--RFCFFLALEDYQAALCDV---QAILT---LSP-------D-------------------YR  546 (721)
Q Consensus       509 ---~P~-----~~~~~~--R~~~~~~lgd~eeAl~d~---~kal~---L~P-------~-------------------~~  546 (721)
                         +|+     ...+..  .-.++...|+++.+....   +..+.   -.|       +                   ..
T Consensus       212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f  291 (608)
T PF10345_consen  212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF  291 (608)
T ss_pred             cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence               232     222222  335678888866665443   22222   222       1                   00


Q ss_pred             hhhhhHHHHHH---HHH--------HHHhhhhhhHHHHHHhhhhccc-cccccchHHHHHHHHHhCCC----ChhHHHHH
Q 004984          547 MFEGRVAASQL---HML--------VREHIDNWTIADCWLQLYDRWS-SVDDIGSLSVIYQMLESDAP----KGVLYFRQ  610 (721)
Q Consensus       547 ~~~~~~~a~~~---~~~--------l~~~~~~~~~A~~~~~l~~~~~-~~dd~~al~~~~qaL~l~P~----~~~~~~~~  610 (721)
                      .|.+......+   ...        .....+.++++.   +.-+.+. ..+... -..+..+.+.-++    .-...+.+
T Consensus       292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l---~~i~~~~~~~~~~~-~~sl~~~~~~~~~~~~l~~~~~~y~  367 (608)
T PF10345_consen  292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL---KQIEKLKIKSPSAP-SESLSEASERIQWLRYLQCYLLFYQ  367 (608)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH---HHHHHhhccCCCCC-CcCHHHHHHhHHHHHHHHHHHHHHH
Confidence            12222221111   111        112233333331   2222222 000000 0011111111111    12345677


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHH-
Q 004984          611 SLLLLRLNCPEAAMRSLQLARQHAA---------SDHERLVYEGWILYDTSHCEEGLRKAE--------ESIQMKRSFE-  672 (721)
Q Consensus       611 g~~L~~lg~~eeAl~~~~~Al~l~P---------~~~ea~~~~G~~Ly~~G~~deAl~~ye--------~Ai~i~~~~~-  672 (721)
                      +....-+|++..|......+.....         -.+..++-.|...-..|+.+.|+..|.        .+....+..| 
T Consensus       368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El  447 (608)
T PF10345_consen  368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL  447 (608)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence            7777889999889988887776632         247789999999999999999999997        6667777777 


Q ss_pred             ---HHHHHHHHhhccC
Q 004984          673 ---AFFLKAYALADSS  685 (721)
Q Consensus       673 ---a~~~~~~~~~~~~  685 (721)
                         |=.|..+.+-+.+
T Consensus       448 ~ila~LNl~~I~~~~~  463 (608)
T PF10345_consen  448 YILAALNLAIILQYES  463 (608)
T ss_pred             HHHHHHHHHHHhHhhc
Confidence               2234555554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.10  E-value=0.031  Score=40.37  Aligned_cols=29  Identities=10%  Similarity=0.067  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGFK  509 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~  509 (721)
                      +|.++|.++..+|++++|++.|+++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46677777777777777777777766543

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=95.04  E-value=0.06  Score=54.54  Aligned_cols=93  Identities=19%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             CccEEEEEcCeEEEeehhhhhcCCH--HHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984          181 LRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL  255 (721)
Q Consensus       181 ~~DV~l~v~~~~~~aHr~vLAa~S~--yF~amF~~~---~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v  255 (721)
                      .+=|.+.+||+.|-.-+--|..+-|  -.-+||.+.   -.|+.+.-+-|.   -+|.-|+.+++|+..|.+...+.-++
T Consensus         8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~   84 (302)
T KOG1665|consen    8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDC   84 (302)
T ss_pred             hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccH
Confidence            3458899999999888877777765  678899873   245566667776   79999999999999999986677789


Q ss_pred             HHHHHHhhhcChhhHHHHHHH
Q 004984          256 LEILIFANKFCCERLKDACDR  276 (721)
Q Consensus       256 ~~LL~aAd~~~v~~L~~~C~~  276 (721)
                      .++|..|++|++-.|++.-+.
T Consensus        85 lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   85 LGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             HHHHHHhhHHhhHhHHhHHhh
Confidence            999999999999999987776

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.02  E-value=0.32  Score=51.93  Aligned_cols=84  Identities=10%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESI  665 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~Ly~~--G~~deAl~~ye~Ai  665 (721)
                      |..+|++++...|.++++|.....-|..+|+.+.|...|++++..-|... -...+.-|+-|..  |+.+.....++|+.
T Consensus        55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47788889999999999999999999999999999999999999988877 5666677776655  99999999999999


Q ss_pred             hcCCCHH
Q 004984          666 QMKRSFE  672 (721)
Q Consensus       666 ~i~~~~~  672 (721)
                      ++-|+..
T Consensus       135 ~~~~~~~  141 (280)
T PF05843_consen  135 ELFPEDN  141 (280)
T ss_dssp             HHTTTS-
T ss_pred             HHhhhhh
Confidence            9987744

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=94.86  E-value=0.072  Score=58.79  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=71.0

Q ss_pred             EEEEEcCeEEEeehhhhhcCC--HHHHHhhcCCCCcCCcce--EEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL  259 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S--~yF~amF~~~~~Es~~~~--I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL  259 (721)
                      |.|.|||+.|.-.+.-|+...  .+|-++|++.+.-.+...  |-|.   =+|+.|..+|+|+.||.++ ++.-....++
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll   88 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL   88 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence            789999999999999997655  599999988775444333  5555   6899999999999999999 7655555555


Q ss_pred             H-HhhhcChhhHHH---HHHHH
Q 004984          260 I-FANKFCCERLKD---ACDRK  277 (721)
Q Consensus       260 ~-aAd~~~v~~L~~---~C~~~  277 (721)
                      . =|.+|+++.+.+   .|+.-
T Consensus        89 hdEA~fYGl~~llrrl~~~~~~  110 (465)
T KOG2714|consen   89 HDEAMFYGLTPLLRRLTLCEEL  110 (465)
T ss_pred             hhhhhhcCcHHHHHHhhcCccc
Confidence            5 899999999886   45443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.83  E-value=9.2  Score=46.40  Aligned_cols=264  Identities=12%  Similarity=-0.020  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccchh-h---HhhHHHHHHHhCCHHHHHHHHH----HHHhcCCC----cHHHHH
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-S---IAGLARLGYIKGHKLWAYEKLN----SVISSVTP----LGWMYQ  453 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-A---~~~lg~~~~~~G~~~~A~~~~~----~aI~~~~~----~~~ay~  453 (721)
                      +++-.......|...+|+.+   |+..+... +   .-+.|.-....++..-=+++.+    ..+..+|.    .+|..+
T Consensus       350 H~~Aa~w~~~~g~~~eAI~h---AlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~  426 (894)
T COG2909         350 HRAAAEWFAEHGLPSEAIDH---ALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA  426 (894)
T ss_pred             HHHHHHHHHhCCChHHHHHH---HHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence            34445556677888888764   34342211 1   1112222233333322222221    23334554    344444


Q ss_pred             HHhhcCChhHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------HHHHHH
Q 004984          454 ERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL------ECLELR  518 (721)
Q Consensus       454 ~rg~~~~~~eAl~d~~kAieLdP~---------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~------~~~~~R  518 (721)
                      -...+   .||-...+++-.--|.         .+..-.-+|.+....|++++|++..++++..=|..      -+....
T Consensus       427 s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         427 SQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            44444   7776666665554444         24555669999999999999999999999876631      223456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE  598 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~  598 (721)
                      +.+..-.|++++|....+.+.++.-.|.-++--+-+......+.....+...++.   ....         --...|-+.
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~---~~~~---------~~~~~q~l~  571 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ---EKAF---------NLIREQHLE  571 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHH---------HHHHHHHhh
Confidence            7789999999999999999999866653333223333434444444443333321   0000         124667777


Q ss_pred             hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHE-RLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~e-a~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      ..|.+.-+.--++.++..-.|.+++..-.+..+++--.      ... ++..++.+.+..|++|+|.....+...+
T Consensus       572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            78887777666666666666688888888877765432      222 2347788899999999999988887775

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.81  E-value=0.23  Score=43.91  Aligned_cols=76  Identities=9%  Similarity=-0.074  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ++-+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++  ..+.-.+=-++--+|.-+.-...|+|-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            567888889999999999999999999999999999999998888876  4454555555666677676777777654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.80  E-value=11  Score=44.72  Aligned_cols=178  Identities=11%  Similarity=-0.015  Sum_probs=100.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-hCCC
Q 004984          478 LSYPYMYRASSLMTKQNVEAALAEIN--------RILGFKLALECL----ELRFCFFLALEDYQAALCDVQAILT-LSPD  544 (721)
Q Consensus       478 ~~~ay~~rg~~l~~lg~~~eAl~~~~--------kAL~l~P~~~~~----~~R~~~~~~lgd~eeAl~d~~kal~-L~P~  544 (721)
                      .+..++-.|..++..|+.+.|+..|.        .+....+..+.+    .|+.+++...+.-..-..+...+++ ++|.
T Consensus       403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~  482 (608)
T PF10345_consen  403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL  482 (608)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence            46778889999999999999999998        555555554433    3466676666654443335666666 6664


Q ss_pred             ch---hhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          545 YR---MFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       545 ~~---~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      ..   ..+.+.+.......+..... ...++.-  .+-+         ++..+.+++...---.-+.+-.|..+. .|..
T Consensus       483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~--~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~  550 (608)
T PF10345_consen  483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR--HLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV  550 (608)
T ss_pred             ccCCccHHHHHHHHHHHHHHhhCCccccHHHHH--HHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence            21   12223322222211111100 0111110  0000         122222223332233334556666666 7999


Q ss_pred             HHHHHHHHHHHHhCCCC---hhHHH---HHHHH---HHhcCCHHHHHHHHHHHHhc
Q 004984          621 EAAMRSLQLARQHAASD---HERLV---YEGWI---LYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~---~ea~~---~~G~~---Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      +|......+++.+.+..   ...+|   +.|.+   +-..|+.++|-...++...+
T Consensus       551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~  606 (608)
T PF10345_consen  551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV  606 (608)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence            99888888888776665   88777   44443   45679999998888776543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.77  E-value=0.088  Score=48.19  Aligned_cols=87  Identities=13%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             cccccchHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          583 SVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       583 ~~dd~~al~~~~qaL~l~P~~~---~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                      +-+-+.||.+++..+...+++.   ..+.-+|.++.++..           .-.|++.|+++..+.|+.+-.++.+|.-+
T Consensus         9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l   88 (111)
T PF04781_consen    9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQL   88 (111)
T ss_pred             ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence            3455668999999999999988   778899999977432           34799999999999999999999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhc-CC
Q 004984          649 YDTSHCEEGLRKAEESIQM-KR  669 (721)
Q Consensus       649 y~~G~~deAl~~ye~Ai~i-~~  669 (721)
                      --.-.|++++...+|++++ +|
T Consensus        89 ~s~~~Ykk~v~kak~~Lsv~~p  110 (111)
T PF04781_consen   89 GSVKYYKKAVKKAKRGLSVTNP  110 (111)
T ss_pred             hhHHHHHHHHHHHHHHhcccCC
Confidence            8888899999999999997 44

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.66  E-value=0.12  Score=58.51  Aligned_cols=84  Identities=19%  Similarity=0.108  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l---g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      ..|+.+|.+|+.--|+....|.||+.+++..   |+.-.|+.|.-.|+++||. ..+++.++.++..++++.+|+.+...
T Consensus       391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a  470 (758)
T KOG1310|consen  391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA  470 (758)
T ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence            4455555555555555555555555555543   2333455555555555554 33344444555555555555555555


Q ss_pred             HHhhCCCc
Q 004984          538 ILTLSPDY  545 (721)
Q Consensus       538 al~L~P~~  545 (721)
                      +....|.+
T Consensus       471 lq~~~Ptd  478 (758)
T KOG1310|consen  471 LQMSFPTD  478 (758)
T ss_pred             HhhcCchh
Confidence            55555533

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.45  E-value=0.061  Score=37.18  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                      ++++++|.++.++|++++|++.+++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999985

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.43  E-value=0.092  Score=55.82  Aligned_cols=72  Identities=14%  Similarity=0.005  Sum_probs=64.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984          609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA  680 (721)
Q Consensus       609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~  680 (721)
                      +.+.-..+.|+.|.|+..+.-|+.++|++++++.-.|...-.-.+.-+|-+.|-||+.|.|+.. |--||+-+
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            4444557899999999999999999999999999999999999999999999999999999987 77777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.40  E-value=0.11  Score=58.60  Aligned_cols=88  Identities=13%  Similarity=-0.067  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ++..|.+++..-|....++-|++.++.+   -|+.-.|+++.-.|++++|...-||++++-+|..++++.||++....+.
T Consensus       393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq  472 (758)
T KOG1310|consen  393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ  472 (758)
T ss_pred             HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence            4778999999999999999999999988   6788889999999999999999999999999999999999999988888


Q ss_pred             hcCCCHHHHHH
Q 004984          666 QMKRSFEAFFL  676 (721)
Q Consensus       666 ~i~~~~~a~~~  676 (721)
                      -..|+..|--+
T Consensus       473 ~~~Ptd~a~~~  483 (758)
T KOG1310|consen  473 MSFPTDVARQN  483 (758)
T ss_pred             hcCchhhhhhh
Confidence            88885554433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.29  E-value=1.5  Score=47.90  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                      +.+....+...|..|-|+..++..++++=
T Consensus       157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  157 FLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            55666667778888999999988888874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.23  E-value=0.07  Score=38.84  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=26.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      +.++.++|.++..+|++++|.+.+++|+++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            35788999999999999999999999998754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.95  E-value=1  Score=48.10  Aligned_cols=84  Identities=11%  Similarity=0.011  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~----~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      +-|...|++++..-|++...|..-..-+...|+.+.|-..|++++..-|...    .|......=...|+.+.....+++
T Consensus        53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R  132 (280)
T PF05843_consen   53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR  132 (280)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3366667777777788877787777888899999999999999998766533    333334456677999999999999


Q ss_pred             HHhhCCCc
Q 004984          538 ILTLSPDY  545 (721)
Q Consensus       538 al~L~P~~  545 (721)
                      +.++-|+.
T Consensus       133 ~~~~~~~~  140 (280)
T PF05843_consen  133 AEELFPED  140 (280)
T ss_dssp             HHHHTTTS
T ss_pred             HHHHhhhh
Confidence            99998884

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.93  E-value=1  Score=50.86  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHH---------hC---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ---------HA---------ASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~---------l~---------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      -.+|+|+|-+.+++|++..+...|.+|++         +.         ...-+.+||.|..++..|+--+|.+++-+|.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            45689999999999999999999999997         12         2467999999999999999999999999999


Q ss_pred             hcCCCH-HHHH---------HHHHHhhccCCCCCchhhHH
Q 004984          666 QMKRSF-EAFF---------LKAYALADSSQDSSCSSTVV  695 (721)
Q Consensus       666 ~i~~~~-~a~~---------~~~~~~~~~~~~~~~~~~~~  695 (721)
                      ..=... --|.         ++|-.+..+.--|+-|..++
T Consensus       363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~  402 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV  402 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence            873333 3554         34444455554555555544

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.18  Score=49.47  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=70.7

Q ss_pred             cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--------------------
Q 004984          189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--------------------  248 (721)
Q Consensus       189 ~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~--------------------  248 (721)
                      +|+.|.+-..+ |-.|..+.+++...--......|.|+  +|+..+|+.|++|++.-+-+                    
T Consensus        13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD   89 (162)
T KOG1724|consen   13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD   89 (162)
T ss_pred             CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence            67777777665 46788888888653222222578888  59999999999999984321                    


Q ss_pred             ----CCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       249 ----~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                          .+..+++.+|+.||++|.+++|.+.|++.++.++.
T Consensus        90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik  128 (162)
T KOG1724|consen   90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK  128 (162)
T ss_pred             HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence                02345789999999999999999999999998874

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.76  E-value=0.18  Score=40.05  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=15.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|+++...|++|+|++|....+++++++|++.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            44555555555555555555555555555554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=1.4  Score=50.88  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=76.0

Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCC-HHHHHHH------HHHHHhcCCHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR-ILGFKLA-LECLELR------FCFFLALEDYQA  530 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~k-AL~l~P~-~~~~~~R------~~~~~~lgd~ee  530 (721)
                      +....+...+..++..||++..++.++|.++...|..-.|+.++.. +....|+ .+....+      +..+..+|+.++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (620)
T COG3914          81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE  160 (620)
T ss_pred             ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHH
Confidence            3446778888999999999999999999999999999999999888 8888886 3433334      678899999999


Q ss_pred             HHHHHHHHHhhCCCchh
Q 004984          531 ALCDVQAILTLSPDYRM  547 (721)
Q Consensus       531 Al~d~~kal~L~P~~~~  547 (721)
                      |..+..++..+.|.|+.
T Consensus       161 ~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         161 AELALERAVDLLPKYPR  177 (620)
T ss_pred             HHHHHHHHHHhhhhhhh
Confidence            99999999999999943

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.65  E-value=5  Score=41.99  Aligned_cols=158  Identities=11%  Similarity=-0.046  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchh-------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHH
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIY-------SIAGLARLGYIKGHKLWAYEKLNSVISSVT-----PLGW  450 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~-------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-----~~~~  450 (721)
                      -.+..-++.+...++|++|..+..+|++- ....       ++-..|.+......+.++...|++|+.+|.     +-+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            34444455555566666666666666643 1111       122233333444455555666666665532     2222


Q ss_pred             HHHHH-hhc---CChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHH--
Q 004984          451 MYQER-SLY---CEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LEC--  514 (721)
Q Consensus       451 ay~~r-g~~---~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~--  514 (721)
                      +-..+ ++.   -..++|+.-|.+++++=-..      .+-|...+.+|..++++.||-..|.|-..+...    +..  
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k  191 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK  191 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence            22222 221   12266666666666542222      345566788888888888888777765544321    111  


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          515 -LELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       515 -~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                       +.....+++-..||..|...|+..-.+
T Consensus       192 ~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  192 AYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence             222335677777888888888776655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.59  E-value=23  Score=43.21  Aligned_cols=233  Identities=15%  Similarity=0.066  Sum_probs=151.1

Q ss_pred             HHHHHHHhhhcCCCCchhHHHHHHHHHHh-hh-----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----
Q 004984          347 LYCLLSEVAMNLDPRSDKTVCFLERLLES-AE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----  415 (721)
Q Consensus       347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~-a~-----~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----  415 (721)
                      +.-+-.|.... ..|...+..+++++-+. +.     .....+...-..|.+...+|+.++|++.-+.|+..=+.     
T Consensus       417 Lvll~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~  495 (894)
T COG2909         417 LVLLQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS  495 (894)
T ss_pred             HHHHHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence            33444455444 34666777777775542 21     12122334466899999999999999999999987222     


Q ss_pred             --hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHhhcC--C----hhHHHHH----HHHHHhcCCC
Q 004984          416 --YSIAGLARLGYIKGHKLWAYEKLNSVISSVT------PLGWMYQERSLYC--E----GDKRWED----LDKATALDPT  477 (721)
Q Consensus       416 --~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~------~~~~ay~~rg~~~--~----~~eAl~d----~~kAieLdP~  477 (721)
                        -+....|.+..-+|++++|...+..+-+...      -..|+...++.+.  +    +.+....    +.+-+.-.|-
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~  575 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR  575 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence              2344578889999999999888887776521      1234444333221  1    1222222    3345566788


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhh
Q 004984          478 LSYPYMYRASSLMTKQNVEAALAEINRILGFK----LAL--ECL--ELRFCFFLALEDYQAALCDVQAILTLSPDY-RMF  548 (721)
Q Consensus       478 ~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~----P~~--~~~--~~R~~~~~~lgd~eeAl~d~~kal~L~P~~-~~~  548 (721)
                      ..++..-|+.++..--+++++..+..+.+++-    |.+  .++  ...+-+....||+++|..-.+....+--+. ...
T Consensus       576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~  655 (894)
T COG2909         576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV  655 (894)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence            88888889999988888999999999999873    222  222  256778999999999999998887753332 223


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDR  580 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~  580 (721)
                      .-..++....-.+-....+.+.+.+|..-...
T Consensus       656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~  687 (894)
T COG2909         656 DYLAAAYKVKLILWLAQGDKELAAEWLLKSGD  687 (894)
T ss_pred             hHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence            33455555555566667777777776655444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.12  E-value=0.28  Score=50.42  Aligned_cols=58  Identities=14%  Similarity=-0.014  Sum_probs=34.6

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ..-++.+.|.+.|.+|+++.|..+..++-+|..-.+.|+++.|.+.|++.++|+|.-.
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            4445555666666666666666666666666666666666666666666666665544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.12  E-value=0.33  Score=55.58  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=47.3

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCC--------cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSVTP--------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~~~--------~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      +..+|+...|++++.+|+.+.|.        ++.....-|..   .+|-.-+.+++.++-.-+-.++..|.++..+++.+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~---~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH---LDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh---ccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            35566666666666666665542        23333333322   55555556666666555555555666666666666


Q ss_pred             HHHHHHHHHHhcCCC
Q 004984          497 AALAEINRILGFKLA  511 (721)
Q Consensus       497 eAl~~~~kAL~l~P~  511 (721)
                      .||+.|+.|+.++|+
T Consensus       694 ~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  694 GALEAFRQALKLTTK  708 (886)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            666666666666654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=1.6  Score=50.32  Aligned_cols=127  Identities=12%  Similarity=-0.048  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 004984          498 ALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW  574 (721)
Q Consensus       498 Al~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~  574 (721)
                      |+..+.--+.++|+ +..+..  +...+..+++...|....+.++..||++...+..     +...++....+...+   
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----L~~ale~~~~~~~~~---  121 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQN-----LAAALELDGLQFLAL---  121 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHH-----HHHHHHHhhhHHHHH---
Confidence            44444444445554 333211  3445666677777777777777777776432211     111111111111111   


Q ss_pred             HhhhhccccccccchHHHHHHHHHhCCCChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       575 ~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~------g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                                     +...+.+....|.+..+.+-+      |..+..+|+.++|.....++.++.|.+++  ...||+-
T Consensus       122 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~~  184 (620)
T COG3914         122 ---------------ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALMT  184 (620)
T ss_pred             ---------------HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHHH
Confidence                           223334666666666666655      88899999999999999999999999954  4555554


Q ss_pred             H
Q 004984          649 Y  649 (721)
Q Consensus       649 y  649 (721)
                      .
T Consensus       185 ~  185 (620)
T COG3914         185 A  185 (620)
T ss_pred             H
Confidence            4

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.71  E-value=4  Score=44.52  Aligned_cols=158  Identities=11%  Similarity=0.052  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984          464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP  543 (721)
Q Consensus       464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P  543 (721)
                      ....|++.++-+|++..+|..+....-.+-......              ....++.       .+..+.-|++|++-+|
T Consensus         4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a~-------~E~klsilerAL~~np   62 (321)
T PF08424_consen    4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRAL-------AERKLSILERALKHNP   62 (321)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHHH-------HHHHHHHHHHHHHhCC
Confidence            456789999999999999988776554433211111              0111111       3566778889999999


Q ss_pred             CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----
Q 004984          544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-----  618 (721)
Q Consensus       544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-----  618 (721)
                      +...        -.++.+....+.|+.-.                -..-.++++..+|++..+|  ++.+-..++     
T Consensus        63 ~~~~--------L~l~~l~~~~~~~~~~~----------------l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f  116 (321)
T PF08424_consen   63 DSER--------LLLGYLEEGEKVWDSEK----------------LAKKWEELLFKNPGSPELW--REYLDFRQSNFASF  116 (321)
T ss_pred             CCHH--------HHHHHHHHHHHhCCHHH----------------HHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence            8732        22222233333332221                1336889999999999999  555666655     


Q ss_pred             ChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          619 CPEAAMRSLQLARQHAASD------------------HERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~------------------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      .+++-...|.++++.-..-                  .+.+..+..-+.+.|..+.|++.+.-.++++
T Consensus       117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            3556777777776654432                  2234445555778899999999999998864

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.59  E-value=22  Score=40.33  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHhh
Q 004984          614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFFLKAYALA  682 (721)
Q Consensus       614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~---a~~~~~~~~~  682 (721)
                      |.-.|.+.++.-...=..+++| ++.++.-+|.+++...+|+|||..+..   +-|+-.   +---||.+|-
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC  539 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC  539 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence            4556888888888888899999 899999999999999999999977653   344443   4444566553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.46  E-value=0.31  Score=55.86  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             ccccccccc-hHHHHHHHHHhCCCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984          580 RWSSVDDIG-SLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       580 ~~~~~dd~~-al~~~~qaL~l~P~~~~-~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      .|..++..- |.+|+.+|+-..|-..+ -..+++.++.+-|-.-.|-..+.++++++...+--++.+|..++.+.+.++|
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            455555555 88899999999997654 4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHhh-----ccC-CCCCchhhHHHH--HHHhhcCCCC
Q 004984          658 LRKAEESIQMKRSFE--AFFLKAYALA-----DSS-QDSSCSSTVVSL--LEDALKCPSD  707 (721)
Q Consensus       658 l~~ye~Ai~i~~~~~--a~~~~~~~~~-----~~~-~~~~~~~~~~~~--~~~~~~~~~~  707 (721)
                      ++.+++|+.+.|+..  .=-||-++-.     =+| .-+-||+|||+-  .-|+ +|-||
T Consensus       696 ~~~~~~a~~~~~~~~~~~~~l~~i~c~~~~~~~~~~~~svc~~~ive~sn~~d~-~~n~d  754 (886)
T KOG4507|consen  696 LEAFRQALKLTTKCPECENSLKLIRCMQFYPFLYNITSSVCSGTVVEESNGSDE-MENSD  754 (886)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHhhhhhHHHhccccceeeeeeecCCCcch-hhccc
Confidence            999999999999876  2223332221     122 233467777631  2233 56666

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.45  E-value=0.2  Score=51.53  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL  510 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P  510 (721)
                      +.|.+.|++|++|-|+++.-|...|...-..|+++.|...|.+.++++|
T Consensus        12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp   60 (287)
T COG4976          12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP   60 (287)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence            4444455555555555555555555555555555555555555555544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.32  E-value=1  Score=47.53  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI  647 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~  647 (721)
                      +.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++.+
T Consensus       201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            6677888888888888888899999999999999999999999999988876655443

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=92.07  E-value=2  Score=46.53  Aligned_cols=125  Identities=19%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhcC-CCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984          495 VEAALAEINRILGFK-LALECLE-------LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID  566 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~-P~~~~~~-------~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~  566 (721)
                      .+|++.-++||+..+ |.|..+.       .++. .-..-||..-...|+....+.|+-.--.||..+......-..   
T Consensus       272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~a---  347 (415)
T COG4941         272 IDEGLALLDRALASRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAA---  347 (415)
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHh---
Confidence            567777778887764 4443221       1111 345567888888999999999997655556555443321111   


Q ss_pred             hhhHHHHHHhhhhccccccccchHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                                            +|+.++...+-  =-++-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-+
T Consensus       348 ----------------------gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         348 ----------------------GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             ----------------------HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence                                  24444444433  234455677899999999999999999999999999999976655


Q ss_pred             H
Q 004984          645 G  645 (721)
Q Consensus       645 G  645 (721)
                      +
T Consensus       406 ~  406 (415)
T COG4941         406 Q  406 (415)
T ss_pred             H
Confidence            4

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=92.04  E-value=0.65  Score=37.95  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT  244 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt  244 (721)
                      |+|+- +|+.|.+.+.+. -.|..++.||.+.-.+..  .|.++  +|+..+|+.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH   59 (62)
T ss_dssp             EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence            56665 788999988865 589999999986433332  79998  5999999999999863

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.58  E-value=0.29  Score=35.46  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                      +.++.++|.+|..+|++++|+..+++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788888888888888888888888865

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.42  E-value=2.2  Score=43.34  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             hhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 004984          576 QLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD  650 (721)
Q Consensus       576 ~l~~~~~~~dd~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~  650 (721)
                      -+|-.|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+|+++.+.+    ++.+..++.+++.
T Consensus       112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            4677888888887777665543221 356778888887777 566777999999999998765    9999999999999


Q ss_pred             cCCHHHHH
Q 004984          651 TSHCEEGL  658 (721)
Q Consensus       651 ~G~~deAl  658 (721)
                      +|++++|.
T Consensus       191 ~~~~e~AY  198 (203)
T PF11207_consen  191 LKNYEQAY  198 (203)
T ss_pred             hcchhhhh
Confidence            99999985

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=91.38  E-value=0.63  Score=49.71  Aligned_cols=58  Identities=19%  Similarity=0.062  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF  519 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~  519 (721)
                      ++|..-|+.|+.++|+++++....|...-+-++.-+|=..|-|||.+.|. .+++.+|.
T Consensus       133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            55555555555555555555555555555555555555555555555552 44444443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.73  E-value=41  Score=45.25  Aligned_cols=313  Identities=12%  Similarity=0.023  Sum_probs=182.6

Q ss_pred             HHHHHHHhccchHHHHHHHHHH----HhccchhhH-hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChh
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAA----VNAGHIYSI-AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD  462 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~A----L~~~~~~A~-~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~  462 (721)
                      .++.+-+..|.|..|.-++++-    .+.+-..++ ..+-.+|...+++++-...... ....|++-.-....-..|..+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence            5777888899999999999982    222222232 3344588888888876655432 233444433333333445569


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHH------
Q 004984          463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC-FFLALEDYQAALCD------  534 (721)
Q Consensus       463 eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~-~~~~lgd~eeAl~d------  534 (721)
                      .|.++|++++..+|+....+...=......|.++..+...+=.+.-.++ .+.++..+. +--++++++.-...      
T Consensus      1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~ 1546 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNI 1546 (2382)
T ss_pred             HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccc
Confidence            9999999999999999999998888888999999999877766654443 454544331 21333333322222      


Q ss_pred             -------HHHHH---------------------hhCCCchhhhhhH--HHHHHHHHHH---------Hhhhh-------h
Q 004984          535 -------VQAIL---------------------TLSPDYRMFEGRV--AASQLHMLVR---------EHIDN-------W  568 (721)
Q Consensus       535 -------~~kal---------------------~L~P~~~~~~~~~--~a~~~~~~l~---------~~~~~-------~  568 (721)
                             .-+++                     -++|--..+..+-  .++.....+-         ..+.+       .
T Consensus      1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~ 1626 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSA 1626 (2382)
T ss_pred             cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence                   11111                     1111110000000  0111111110         00000       0


Q ss_pred             hHHHHHHhhhhccccccccc-hHHHHHHHH-Hh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984          569 TIADCWLQLYDRWSSVDDIG-SLSVIYQML-ES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       569 ~~A~~~~~l~~~~~~~dd~~-al~~~~qaL-~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                      ..-+.|....+.-....++. .+-.++|++ +.      +-.-++.|.+.|.+=-+-|+++-|..+.=.|.+..  -+++
T Consensus      1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred             ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence            11133333333333332222 122333332 22      34456667777777777999999999999999888  5788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------------HHHHHHHHHHhh----ccCCCCCchhhHHHHHHHhhc
Q 004984          641 LVYEGWILYDTSHCEEGLRKAEESIQM-KRS------------FEAFFLKAYALA----DSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i-~~~------------~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      +.-++-.+..+|+-..|+...++.+++ .|+            ..-+|.||..+.    +-+-. .+|.-|+..--+|.-
T Consensus      1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKA 1783 (2382)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence            899999999999999999999999976 455            124555555443    33333 556666655555555


Q ss_pred             C
Q 004984          704 C  704 (721)
Q Consensus       704 ~  704 (721)
                      |
T Consensus      1784 i 1784 (2382)
T KOG0890|consen 1784 I 1784 (2382)
T ss_pred             H
Confidence            4

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.50  E-value=0.37  Score=35.62  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFK  509 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~  509 (721)
                      +.|..+|.+-++.++|++|+.||.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467778888888888888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.29  E-value=1.1  Score=39.68  Aligned_cols=56  Identities=25%  Similarity=0.209  Sum_probs=46.5

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          615 LRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~---------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      .+.|++.+|++.+.+........         ..++.++|.+.+..|++++|+..+++||++-+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            56789999988887777665543         468899999999999999999999999998543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.94  E-value=0.38  Score=32.12  Aligned_cols=25  Identities=12%  Similarity=0.004  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      .+++++|++++.+|+.++|.+.+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4566777777777777777766653

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.35  E-value=15  Score=40.80  Aligned_cols=156  Identities=16%  Similarity=0.044  Sum_probs=100.7

Q ss_pred             HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------c-----CCCH-------HHHHHHH---------
Q 004984          470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------F-----KLAL-------ECLELRF---------  519 (721)
Q Consensus       470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~---------l-----~P~~-------~~~~~R~---------  519 (721)
                      ..+.-+|-+.+++..++.++..+|+++.|-+-++|||=         +     ++..       ....||.         
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            34678999999999999999999999999999999852         2     2210       0112332         


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984          520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE  598 (721)
Q Consensus       520 ~~~~~lgd~eeAl~d~~kal~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~  598 (721)
                      ..+.+.|-+.-|++..+-.+.|||. ++. .    +.....-..-.-++++   -++.+++.+...       ...+.+.
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g----~ll~ID~~ALrs~~y~---~Li~~~~~~~~~-------~~~~~~~  175 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-G----VLLFIDYYALRSRQYQ---WLIDFSESPLAK-------CYRNWLS  175 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-h----hHHHHHHHHHhcCCHH---HHHHHHHhHhhh-------hhhhhhh
Confidence            3588999999999999999999999 543 1    1111111111122222   122333321110       0111122


Q ss_pred             hCCCChhHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHhCCCChhHHHH
Q 004984          599 SDAPKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAASDHERLVY  643 (721)
Q Consensus       599 l~P~~~~~~~~~g~~L~~lg~~---------------eeAl~~~~~Al~l~P~~~ea~~~  643 (721)
                      .   -|..-|..++++..+++.               ++|-..+++|+..-|.-.-.+..
T Consensus       176 ~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~  232 (360)
T PF04910_consen  176 L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD  232 (360)
T ss_pred             h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence            2   235678889999999999               89999999999999875544443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.19  E-value=10  Score=42.37  Aligned_cols=94  Identities=11%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh------cC------C
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----EAAMRSLQLARQHAASDHERLVYEGWILYD------TS------H  653 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~------~G------~  653 (721)
                      |...+++|+.||+|-++|..|=.+..+..+.    .+=++.-.+++.-++.|=.|+.||.+++-.      .|      .
T Consensus       131 L~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~  210 (421)
T KOG0529|consen  131 LQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKEL  210 (421)
T ss_pred             HHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHH
Confidence            6778888999999999998888777775554    667888899999999999999999999883      35      3


Q ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      ....+..=..||=-+|+.. +||..=+.|.-
T Consensus       211 l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  211 LQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            6677888889999999988 88886655543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.08  E-value=3.3  Score=40.59  Aligned_cols=64  Identities=13%  Similarity=-0.017  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                      ...++..-.+.|+.+++-.--|.++...|++.+|++.++.+.+-.|..+.+---+++||+.+|+
T Consensus        30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            3344444445555555555555555555555555555555555555555555555555555554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.97  E-value=47  Score=37.83  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCC-----HhhHHHHHHHhcccCChhHHHHHHHHHHhhccc-------CCC
Q 004984          253 NLLLEILIFANKFCCERLKDACDRKLASLVAS-----REDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLN  320 (721)
Q Consensus       253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~-----~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~  320 (721)
                      +-|.+-|.-.-.=..+++...|+..-.+.+..     ++.--.++..+....-+..++.|+..+.-=-|.       .++
T Consensus       261 ~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls  340 (549)
T PF07079_consen  261 DLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLS  340 (549)
T ss_pred             hHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcC
Confidence            33444444333335666777776554333211     111112333444444555666666554322221       567


Q ss_pred             hHHHHHHhccccc
Q 004984          321 DERVVEIFSHANR  333 (721)
Q Consensus       321 ~~~v~~ll~~~~~  333 (721)
                      ...+.+|+|.||.
T Consensus       341 ~~~lq~Iv~~DD~  353 (549)
T PF07079_consen  341 PKVLQDIVCEDDE  353 (549)
T ss_pred             HHHHHHHHhcchH
Confidence            7888888887775

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=1.4  Score=46.51  Aligned_cols=69  Identities=17%  Similarity=0.038  Sum_probs=61.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      .=.++.+-++++.|.++.++.+.++|.+++-+.-+|.+|+++|.+.-|+..++..++.-|+-. |=.+|+
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            444677889999999999999999999999999999999999999999999999999988877 555554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.41  E-value=26  Score=40.03  Aligned_cols=154  Identities=18%  Similarity=0.043  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhc---cch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA---GHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISS-------  444 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~---~~~---------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~-------  444 (721)
                      +.+..+.++..-+|++.+|++....+.+.   -|.         ..+..+|.-...-|.++.|...|..|.++       
T Consensus       324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~  403 (629)
T KOG2300|consen  324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ  403 (629)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence            34456677777788888888877666543   111         12334565556667778887777777765       


Q ss_pred             ---CCCcHHHHHHHhhcCChhHHHHHHHHHHhc-CCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          445 ---VTPLGWMYQERSLYCEGDKRWEDLDKATAL-DPTL----------SYPYMYRASSLMTKQNVEAALAEINRILGFKL  510 (721)
Q Consensus       445 ---~~~~~~ay~~rg~~~~~~eAl~d~~kAieL-dP~~----------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P  510 (721)
                         +.|++..|.+.|.       -+|+-+++++ .|.+          +..++-.|...+.++++.||-.-..+.++.. 
T Consensus       404 a~~nlnlAi~YL~~~~-------~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-  475 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGD-------AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-  475 (629)
T ss_pred             HHHHHhHHHHHHHhcc-------HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-
Confidence               2344445544432       2445555554 6664          3566778899999999999999999999875 


Q ss_pred             CHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          511 ALEC--------LELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       511 ~~~~--------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      +.+.        +..++.+..-+|+..++..-.+-+..+..+-
T Consensus       476 naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  476 NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            3221        2345677889999999999888888877553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.93  E-value=1.6  Score=37.62  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI---LYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~---Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      +..+|+=|...+..++|+...++|++..++..+.+..+|++   +.+.|+|.+.++..-+=+.|..
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567778899999999999999999999999999998875   7889999999988777666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.86  E-value=5.8  Score=38.91  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ..+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence            33445567999999999999999999999999999999999999999999999988888776

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.81  E-value=13  Score=45.72  Aligned_cols=153  Identities=13%  Similarity=0.027  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CC----CcHHHHHHHhh
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VT----PLGWMYQERSL  457 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~----~~~~ay~~rg~  457 (721)
                      -.|-++|.+.++.|...+|++.|-+|   +.+.+|...-.+..+.|.+++=++.+.-|-+.  .|    .+-.+|-..++
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence            45678999999999999999999765   33444445555556666666655544322221  11    11222222211


Q ss_pred             c-------------------------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Q 004984          458 Y-------------------------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A  511 (721)
Q Consensus       458 ~-------------------------~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~  511 (721)
                      +                         +.++.|.-.|        ++..-|..+|..+..+|.|+.|+...+||=..+- .
T Consensus      1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            1                         0113333334        3455788999999999999999999999864432 0


Q ss_pred             ---HHH----------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          512 ---LEC----------------------LELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       512 ---~~~----------------------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                         ..|                      +.-.-..|...|-++|-|..++.++-|.-.++.
T Consensus      1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred             HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence               111                      111223488999999999999999999876643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.72  E-value=8.4  Score=45.65  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=25.4

Q ss_pred             HHHHHHHhhcCCHhh---HHHHHHHhcccCChhHHHHHHHHH
Q 004984          273 ACDRKLASLVASRED---AVELMGYAIEENSPVLAVSCLQVF  311 (721)
Q Consensus       273 ~C~~~L~~~l~~~~n---~~~l~~~A~~~~~~~L~~~c~~~~  311 (721)
                      ....||.+.-+.++.   -+.+-++|++++.-.++..|..-+
T Consensus       462 ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai  503 (1636)
T KOG3616|consen  462 RATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI  503 (1636)
T ss_pred             HHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            445677776654332   233446788988888899996443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.59  E-value=0.19  Score=54.60  Aligned_cols=86  Identities=12%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             ccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHHHH
Q 004984          182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI  260 (721)
Q Consensus       182 ~DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~LL~  260 (721)
                      .|++|.+ +|+.|-|||..|+++|.+|..-+..-+  ....+|.-..  +-+.+|..++.|.|-..=. +-++.-.+|+.
T Consensus       150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~na-~~~~qynalls  224 (516)
T KOG0511|consen  150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTNA-EWKDQYNALLS  224 (516)
T ss_pred             cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence            4899988 788899999999999998754433222  2334553332  8899999999999977333 44556688999


Q ss_pred             HhhhcChhhHHH
Q 004984          261 FANKFCCERLKD  272 (721)
Q Consensus       261 aAd~~~v~~L~~  272 (721)
                      ...+|+++.+..
T Consensus       225 i~~kF~~e~l~~  236 (516)
T KOG0511|consen  225 IEVKFSKEKLSL  236 (516)
T ss_pred             hhhhccHHHhHH
Confidence            999999887654

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=87.53  E-value=1.1  Score=38.41  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC--CHhhHHHHH
Q 004984          250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELM  292 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~~~l~  292 (721)
                      ++.+.+.+|+.||++++++.|.+.|++.++..+.  +++....++
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~f   55 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYF   55 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHc
Confidence            5678999999999999999999999999999885  344444443

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.36  E-value=3.7  Score=43.93  Aligned_cols=88  Identities=10%  Similarity=0.051  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS  684 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~  684 (721)
                      .++..++..+...|+.+++...+++-++++|-+-.++..+=-.++..|+...|+..|++.-..            --.|.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~edl  221 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAEEL  221 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhhhc
Confidence            445567778888899999999999999999999999999999999999999999999987665            23444


Q ss_pred             CCCCCchhhHHHHHHHhhcCCC
Q 004984          685 SQDSSCSSTVVSLLEDALKCPS  706 (721)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~  706 (721)
                      ++||  +..+-.+.+++++||-
T Consensus       222 gi~P--~~~~~~~y~~~~~~~~  241 (280)
T COG3629         222 GIDP--APELRALYEEILRQDP  241 (280)
T ss_pred             CCCc--cHHHHHHHHHHhcccc
Confidence            4554  5677888888887764

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=87.32  E-value=4  Score=46.47  Aligned_cols=83  Identities=4%  Similarity=-0.023  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMK  668 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~-~deAl~~ye~Ai~i~  668 (721)
                      +..|++|+...|+++.+|.+-..--.+-+-+.+--..|.+++...|++++.+.+-+.-+|.-+. ++-|-+.+-+++..+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            3367788888888888887776655556657777778888888888888888888777777776 777778888888888


Q ss_pred             CCHH
Q 004984          669 RSFE  672 (721)
Q Consensus       669 ~~~~  672 (721)
                      |+.+
T Consensus       171 pdsp  174 (568)
T KOG2396|consen  171 PDSP  174 (568)
T ss_pred             CCCh
Confidence            8776

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=2.6  Score=39.39  Aligned_cols=96  Identities=21%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCC--C----------
Q 004984          183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--G----------  249 (721)
Q Consensus       183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~--~----------  249 (721)
                      -|.++. +|+.|.+.+. +|-+|-..+.|+.. +.+++- .|..+  +|...+|+.+++|+-..+-.  .          
T Consensus         3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~-p~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks   77 (158)
T COG5201           3 MIELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNY-PIPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS   77 (158)
T ss_pred             ceEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCC-CCccc--chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence            344544 6777777665 57888888988864 333332 23444  59999999999999643211  0          


Q ss_pred             ------------CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          250 ------------VTPNLLLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       250 ------------i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                                  +..+.+.++.-+|+++.+..|.+.||..++..+.
T Consensus        78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir  123 (158)
T COG5201          78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR  123 (158)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence                        2235688999999999999999999999998875

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.02  E-value=54  Score=41.01  Aligned_cols=96  Identities=14%  Similarity=0.092  Sum_probs=62.2

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-HHHHH
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTK-------QNVEAALAEINRILGFKLA-LECLE  516 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~l-------g~~~eAl~~~~kAL~l~P~-~~~~~  516 (721)
                      .+.|+.+-..|   +.|+.-|++.-+-=|+-.   +|.+..|.++.++       ..+++|+.+|++.-.- |. |=-|.
T Consensus       481 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  556 (932)
T PRK13184        481 VPDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYL  556 (932)
T ss_pred             CcHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHH
Confidence            34555555555   666666666665555543   3445556655543       2477888888886632 33 32233


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      -.+.+|..+|+|+|=+++|.-|++.-|+.+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            3567899999999999999999998888754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.87  E-value=0.82  Score=33.81  Aligned_cols=32  Identities=13%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999998853

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.71  E-value=5.2  Score=41.12  Aligned_cols=92  Identities=16%  Similarity=-0.018  Sum_probs=47.8

Q ss_pred             HhccchHHHHHHHHHHHhc----c--c---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHH
Q 004984          394 LLRKEYDEAEHLFEAAVNA----G--H---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR  464 (721)
Q Consensus       394 ~~~g~y~eA~~~f~~AL~~----~--~---~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eA  464 (721)
                      .....+++|++.|.-||-.    +  +   +..+..+|.+|..+|+.+.....+                       ..|
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl-----------------------~~A  144 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL-----------------------RKA  144 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH-----------------------HHH
Confidence            3445788888888877643    1  1   112223444555555533332222                       555


Q ss_pred             HHHHHHHHhcCCC--C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          465 WEDLDKATALDPT--L----SYPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       465 l~d~~kAieLdP~--~----~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                      +..|.+|++-...  .    ....+-+|.+.+++|++++|+.-|.++|.-
T Consensus       145 l~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  145 LEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            6666666655433  1    123334555555666666666666655543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=86.65  E-value=5.7  Score=37.91  Aligned_cols=67  Identities=22%  Similarity=0.300  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          480 YPYMYRASSLMTKQN---VEAALAEINRILG-FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~---~~eAl~~~~kAL~-l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      ...+++|-++....+   .++.|..+...++ -.|.  -++.|.++..+.++|+|+.|++.++..++.+|+|.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            455666777766544   6788999999996 4453  57788899999999999999999999999999984

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.61  E-value=12  Score=38.60  Aligned_cols=33  Identities=18%  Similarity=0.089  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                      +.+..|++..++|++++|++++.+.+...-.+.
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            566788888888888888888888887665554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.19  E-value=1.3  Score=49.67  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      +..++.|++..+||+..|++.++ -|.++..        +          -|.   ..-|-+...|++.|-+|++++||.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~-~idl~~~--------~----------l~~---~V~~~~is~~YyvGFaylMlrRY~  181 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLE-NIDLNKK--------G----------LYT---KVPACHISTYYYVGFAYLMLRRYA  181 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhh-ccCcccc--------h----------hhc---cCcchheehHHHHHHHHHHHHHHH
Confidence            46688899999999999998865 3333321        1          122   123445667899999999999999


Q ss_pred             HHHHHHHHHHhcCCCHH-HHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCc
Q 004984          497 AALAEINRILGFKLALE-CLELRFCFFL-ALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       497 eAl~~~~kAL~l~P~~~-~~~~R~~~~~-~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      +|+..|+.+|-.--... .++.+..-+. -.+..|+....+-=++.+.|.-
T Consensus       182 DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~  232 (404)
T PF10255_consen  182 DAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQR  232 (404)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCC
Confidence            99999999985421111 1111111111 1244555666666666777753

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.81  E-value=0.88  Score=49.58  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV  642 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~  642 (721)
                      +-.-.-+++.+|....+|+++|..+..+.++++|++++..|...+|++....-
T Consensus       295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~  347 (372)
T KOG0546|consen  295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE  347 (372)
T ss_pred             eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence            33344555567777777777777777777777777777777777777665433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.44  E-value=1.1  Score=48.80  Aligned_cols=116  Identities=12%  Similarity=0.023  Sum_probs=62.9

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHH
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED  467 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d  467 (721)
                      +.|.-.+..++|++|..-|.+++...+.   ...-+......+ ...+....  ..+..+.+..-...   ..+..|+..
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~~~~e~~~~-~~~~~~~r--~~~~~n~~~~~lk~---~~~~~a~~~  297 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSE---QSRDREKEQENR-IPPLRELR--FSIRRNLAAVGLKV---KGRGGARFR  297 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcc---cccccccccccc-cccccccc--cccccchHHhcccc---cCCCcceec
Confidence            4577788888999999988888765322   000000110000 00000000  00011111111111   222555555


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL  512 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~  512 (721)
                      -.-+++.+|..+.||+.||..++.+.++++|+.++..+...+|+.
T Consensus       298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d  342 (372)
T KOG0546|consen  298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND  342 (372)
T ss_pred             cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence            556666777777788888888888878888888877777777753

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.24  E-value=1.3  Score=29.58  Aligned_cols=26  Identities=23%  Similarity=0.137  Sum_probs=22.7

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHH
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQL  629 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~  629 (721)
                      +.+++++|.++..+|++++|.+.+++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            35788999999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.56  E-value=19  Score=36.03  Aligned_cols=56  Identities=16%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhcc----chhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984          388 QLGCVRLLRKEYDEAEHLFEAAVNAG----HIYSIAGLARLGYIKGHKLWAYEKLNSVIS  443 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~AL~~~----~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~  443 (721)
                      +-+.-..+-+.-++|...|...=+-+    |.-|..-.|.+..+.|+..+|+..|..+-.
T Consensus        63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~  122 (221)
T COG4649          63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA  122 (221)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence            44445556677788888777643333    222344456677888888888888875443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.43  E-value=9  Score=43.46  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984          492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI  570 (721)
Q Consensus       492 lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~  570 (721)
                      .|+...|-.-...++.-.|. |+...+++.+...+|+||+|.++..-+-.+=..-      ..+.+.+..-..-+.+|+.
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHHH
Confidence            56677777777777777775 6666778888888899988888776554421111      1234444444555566666


Q ss_pred             HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHH-H
Q 004984          571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWI-L  648 (721)
Q Consensus       571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~-L  648 (721)
                      |                  ++.-.-+|...-..++...--+..-..+|.+++|.-...+.+.++|......+| +... +
T Consensus       376 a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~  437 (831)
T PRK15180        376 A------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY  437 (831)
T ss_pred             H------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence            6                  233333333333333333222333345688999999999999999864432222 1111 2


Q ss_pred             HhcC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984          649 YDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALA  682 (721)
Q Consensus       649 y~~G-~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~  682 (721)
                      +..| -|.||...   -|.-|+-...|.--|..|+
T Consensus       438 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  469 (831)
T PRK15180        438 FNDGNAFSEAFHA---GIQSQRLNDTFMETALSLA  469 (831)
T ss_pred             ccCcchHHHHHHh---hhhhhhhhHHHHHHHHHHH
Confidence            2223 25555433   3334444445555555444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.36  E-value=6.6  Score=33.92  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH---HHHhcCCHHHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC---FFLALEDYQAALCDV  535 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~---~~~~lgd~eeAl~d~  535 (721)
                      +...+..|.=+...++.++|+..+++|++-.++ ++.+...|+   +|...|+|.++++.-
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567888888999999999999999998887 566666664   699999999988753

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.28  E-value=16  Score=36.34  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHh
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQERS  456 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~~rg  456 (721)
                      ..++..+|.-+...|++++|.+.|.++.+.    + ..+.+..+-++....|++......++++-..-..- .|...++ 
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr-  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR-  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH-
Confidence            367788999999999999999999998776    1 24455667788888999998877777665543221 1222222 


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL  506 (721)
Q Consensus       457 ~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL  506 (721)
                                              .-..-|..++..++|.+|-..|-.++
T Consensus       115 ------------------------lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 ------------------------LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             ------------------------HHHHHHHHHHHhchHHHHHHHHHccC
Confidence                                    22345677777888888888887766

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.89  E-value=4.3  Score=42.42  Aligned_cols=61  Identities=20%  Similarity=-0.002  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHh
Q 004984          464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCFFLA  524 (721)
Q Consensus       464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-P~~~~~~~R~~~~~~  524 (721)
                      |...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++.-. |-+.+..+...++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999753 445555666666555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.86  E-value=55  Score=32.87  Aligned_cols=44  Identities=11%  Similarity=-0.047  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~  651 (721)
                      +--+|++-.+-|++..|...|.+..+ +...+....+++.+..++
T Consensus       170 rEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl  213 (221)
T COG4649         170 REALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL  213 (221)
T ss_pred             HHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence            33455566667777777777776666 666666666777666553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.74  E-value=3.8  Score=42.86  Aligned_cols=61  Identities=11%  Similarity=-0.070  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      |++.|++|+.+.|+++..|+.+|.+....|+.=+|+=.|-||+...-.|. |.-|-.-.+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888888888888888888888888888888888888888888755556 66665555554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.71  E-value=70  Score=33.96  Aligned_cols=161  Identities=12%  Similarity=0.006  Sum_probs=99.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcC----CC-H----HHHHHHHHHHHhcC-CHHHHHHHHHHHHhh----CCCc---hhh-hhh
Q 004984          490 MTKQNVEAALAEINRILGFK----LA-L----ECLELRFCFFLALE-DYQAALCDVQAILTL----SPDY---RMF-EGR  551 (721)
Q Consensus       490 ~~lg~~~eAl~~~~kAL~l~----P~-~----~~~~~R~~~~~~lg-d~eeAl~d~~kal~L----~P~~---~~~-~~~  551 (721)
                      ..+|+++-|...+.|+=.+.    |+ .    ...++-|.-....+ ++++|+..+++|.++    .+..   ..+ .-|
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            35678888888888876654    32 1    12355666677777 999999999999887    2221   111 112


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA  630 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A  630 (721)
                      ......+                ++.|-.|...+... +...++.+-.--|+.+..++-+=.++.+.++.+++.+.++++
T Consensus        84 ~~iL~~L----------------a~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   84 LSILRLL----------------ANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHH----------------HHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence            2222222                13333333334333 456777777777999999988878888899999999999999


Q ss_pred             HHhCC-CChhHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 004984          631 RQHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       631 l~l~P-~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +..-+ .+..--...+.+ .+-.-....|...+.+.+.
T Consensus       148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~  185 (278)
T PF08631_consen  148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL  185 (278)
T ss_pred             HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence            98765 222221222222 2223344667777777766

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.67  E-value=6.8  Score=37.96  Aligned_cols=63  Identities=13%  Similarity=-0.003  Sum_probs=31.5

Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                      .+++.+--+.|+.++...--|.++...|++.||++.++...+-.|..+.+---+++||+-+|+
T Consensus        31 ~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        31 AMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            344444444555555555555555555555555555555555544444444445555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=82.23  E-value=1.1e+02  Score=35.66  Aligned_cols=229  Identities=18%  Similarity=0.157  Sum_probs=133.7

Q ss_pred             ChhhHHHHHHHHHHhhcCCHhhHHHHHHHh-cccCChhHHHHHHHHHHhhcccCCChHHHHHHhccccccchhhhcccch
Q 004984          266 CCERLKDACDRKLASLVASREDAVELMGYA-IEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLAS  344 (721)
Q Consensus       266 ~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A-~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~~r~~~v~~~~  344 (721)
                      -++.++..|.++|+..-   ...+.++--+ ..++-+.|-++|+-.++.-|.+.+.. ++.+-+|..-+     ..|..-
T Consensus        29 ~~~~~~~ic~~hl~~~k---~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~-~~veh~c~~~l-----~~~e~k   99 (711)
T COG1747          29 ILDVLKGICDEHLAHSK---NSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKN-QIVEHLCTRVL-----EYGESK   99 (711)
T ss_pred             HHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHH-HHHHHHHHHHH-----HhcchH
Confidence            34678899999998754   2334444332 34555677788886666655554443 33444443221     244444


Q ss_pred             hhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHH
Q 004984          345 FSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLAR  423 (721)
Q Consensus       345 ~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~  423 (721)
                      ..++..+.-...+   ..+.+..+.||+++..-+   +.+-.-.+...+ +.++-..|...|.+|+.. =+..-..+.-.
T Consensus       100 mal~el~q~y~en---~n~~l~~lWer~ve~dfn---Dvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~e  172 (711)
T COG1747         100 MALLELLQCYKEN---GNEQLYSLWERLVEYDFN---DVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKE  172 (711)
T ss_pred             HHHHHHHHHHHhc---CchhhHHHHHHHHHhcch---hHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHH
Confidence            4555555544333   566888999998874322   233333444444 448889999999999865 11111111111


Q ss_pred             HHHH----hCCHHHHHHHHHHHHhc--CCCcHHHHHHH--hhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Q 004984          424 LGYI----KGHKLWAYEKLNSVISS--VTPLGWMYQER--SLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT-  491 (721)
Q Consensus       424 ~~~~----~G~~~~A~~~~~~aI~~--~~~~~~ay~~r--g~~---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~-  491 (721)
                      ++.+    .|+-.+-.-...+-|+-  ....+...++.  ..|   ....+|+.-....+++|-.+..|..++-.-+++ 
T Consensus       173 vWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~  252 (711)
T COG1747         173 VWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK  252 (711)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence            2221    13322222222222221  22344444333  222   234899999999999999999998888887877 


Q ss_pred             -------------------cCCHHHHHHHHHHHHhcCC
Q 004984          492 -------------------KQNVEAALAEINRILGFKL  510 (721)
Q Consensus       492 -------------------lg~~~eAl~~~~kAL~l~P  510 (721)
                                         -.++.+|+.+|.+-+-++-
T Consensus       253 y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e  290 (711)
T COG1747         253 YRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE  290 (711)
T ss_pred             hccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence                               7789999999999988765

>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=81.98  E-value=2.2  Score=45.37  Aligned_cols=85  Identities=9%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC---cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHHHHH
Q 004984          183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI  258 (721)
Q Consensus       183 DV~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~---Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v~~L  258 (721)
                      -+|..+++..|-..+.+|-+.- .-.-.||.+++.   -....+.++-+ ||+..+|+++|+|--||.+.-.+.-.|-+|
T Consensus        97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL  175 (438)
T KOG3840|consen   97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL  175 (438)
T ss_pred             ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence            4788888889999988885432 234577877653   23346778877 999999999999999999872223356777


Q ss_pred             HHHhhhcChh
Q 004984          259 LIFANKFCCE  268 (721)
Q Consensus       259 L~aAd~~~v~  268 (721)
                      -.+.|+++++
T Consensus       176 rEACDYLlip  185 (438)
T KOG3840|consen  176 REACDYLLVP  185 (438)
T ss_pred             HhhcceEEee
Confidence            7777777665

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.90  E-value=43  Score=37.21  Aligned_cols=84  Identities=12%  Similarity=-0.054  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhcCCC-ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc--CC----CHHHHHHHHHHHHhcCCH-----
Q 004984          462 DKRWEDLDKATALDPT-LSYPYMY-RASSLMTKQNVEAALAEINRILGF--KL----ALECLELRFCFFLALEDY-----  528 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~-~~~ay~~-rg~~l~~lg~~~eAl~~~~kAL~l--~P----~~~~~~~R~~~~~~lgd~-----  528 (721)
                      .-|++...-.+.|||+ ++..-.. +-..-.+.++|+-=+.-++.....  ..    -|...+..+.++..+++-     
T Consensus       120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~  199 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQS  199 (360)
T ss_pred             HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccc
Confidence            7777777777788887 5433322 333334455565444444443331  11    123345666777777777     


Q ss_pred             ----------HHHHHHHHHHHhhCCCc
Q 004984          529 ----------QAALCDVQAILTLSPDY  545 (721)
Q Consensus       529 ----------eeAl~d~~kal~L~P~~  545 (721)
                                ++|-....+|+..-|.-
T Consensus       200 ~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  200 SAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             ccccccccchhHHHHHHHHHHHHhHHH
Confidence                      78888888888887774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=81.51  E-value=84  Score=37.67  Aligned_cols=26  Identities=8%  Similarity=-0.056  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRI  505 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kA  505 (721)
                      .|+.+.|..+.++...++|...|.+.
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57888888888888888888887764

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.28  E-value=6.3  Score=44.07  Aligned_cols=103  Identities=10%  Similarity=0.061  Sum_probs=51.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          423 RLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI  502 (721)
Q Consensus       423 ~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~  502 (721)
                      ..++++|+|..|...|..|+++-.+-+ +.-.- .+ -..+-+....-+         .--.+..+|..+++.+-|+...
T Consensus       184 s~~yrqk~ya~Aa~rF~taLelcskg~-a~~k~-~~-~~~~di~~vaSf---------Ietklv~CYL~~rkpdlALnh~  251 (569)
T PF15015_consen  184 SSCYRQKKYAVAAGRFRTALELCSKGA-ALSKP-FK-ASAEDISSVASF---------IETKLVTCYLRMRKPDLALNHS  251 (569)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhhh-hccCC-CC-CChhhHHHHHHH---------HHHHHHHhhhhcCCCchHHHHH
Confidence            347888888888888888887632100 00000 00 000001111111         1133555666666666666666


Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      -|.|.+||. +..+.-++.++..+.+|.+|-+.+--
T Consensus       252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami  287 (569)
T PF15015_consen  252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI  287 (569)
T ss_pred             hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666665 33333345566666666666554433

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.74  E-value=62  Score=37.56  Aligned_cols=208  Identities=15%  Similarity=0.109  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      +...+.+.+...+.|+.+-...+.|..+..+|+.+.|+..++..+.  +.     .-+++-|+|++.-+-+|..|-.+++
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3344455667778899999999999999999998888888888886  32     2234568888888888888877777


Q ss_pred             HHHhhCCCchhhhhhHH-----------H-------------HHHHHHHHH-------hhhhhhHHHHHH----------
Q 004984          537 AILTLSPDYRMFEGRVA-----------A-------------SQLHMLVRE-------HIDNWTIADCWL----------  575 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~-----------a-------------~~~~~~l~~-------~~~~~~~A~~~~----------  575 (721)
                      ....++.=...++..-+           .             .....++..       ..--..++.-|.          
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~  407 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL  407 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence            76665543222111111           0             000001111       000011111111          


Q ss_pred             ------hhhhccccccccc--hHHHHHHHHHh----CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---
Q 004984          576 ------QLYDRWSSVDDIG--SLSVIYQMLES----DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS---  636 (721)
Q Consensus       576 ------~l~~~~~~~dd~~--al~~~~qaL~l----~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---~P~---  636 (721)
                            .+.-.|.......  .+.-++..++.    |+.+ ..-++-+|.+|-.||+.+.|...+..+++-   ...   
T Consensus       408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w  487 (546)
T KOG3783|consen  408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW  487 (546)
T ss_pred             ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence                  1222233332222  22333444433    2222 223788999999999999999999998833   222   


Q ss_pred             -ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCH
Q 004984          637 -DHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       637 -~~ea~~~~G~~Ly~~G~-~deAl~~ye~Ai~i~~~~  671 (721)
                       -+.|+|-+|..+.++|. +.||.+..+||-+-.-++
T Consensus       488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence             46789999999999999 999988888887654433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=80.72  E-value=37  Score=40.07  Aligned_cols=187  Identities=15%  Similarity=0.036  Sum_probs=104.9

Q ss_pred             HHHHHHHhccchHHHHHHHHH------HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh----c-CCC-cHHHHHHH
Q 004984          388 QLGCVRLLRKEYDEAEHLFEA------AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS----S-VTP-LGWMYQER  455 (721)
Q Consensus       388 ~lG~~~~~~g~y~eA~~~f~~------AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~----~-~~~-~~~ay~~r  455 (721)
                      .++.+..-.|.+.||.+.|.+      |++.--.--++..+.-+...|+.++--..+++-.+    . .|. -+.++..-
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSa  716 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISA  716 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcc
Confidence            455566667777888777763      55541111123333334444544444333332211    1 121 23344444


Q ss_pred             hhcCChhHHHH----------HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 004984          456 SLYCEGDKRWE----------DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL  525 (721)
Q Consensus       456 g~~~~~~eAl~----------d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~l  525 (721)
                      |..   ++|+.          .++-+-.|+-..-++....+.-+..+..+.-|-+.|.+.=..+       ..-.++.+.
T Consensus       717 Ge~---~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~  786 (1081)
T KOG1538|consen  717 GEH---VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVET  786 (1081)
T ss_pred             cch---hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeec
Confidence            433   44443          2455556677777777777777777777777777776643111       122457788


Q ss_pred             CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                      |+|.+|.+--++-.++-|+-.+-+         +.-....+++++|.                                 
T Consensus       787 ~~W~eAFalAe~hPe~~~dVy~py---------aqwLAE~DrFeEAq---------------------------------  824 (1081)
T KOG1538|consen  787 QRWDEAFALAEKHPEFKDDVYMPY---------AQWLAENDRFEEAQ---------------------------------  824 (1081)
T ss_pred             ccchHhHhhhhhCccccccccchH---------HHHhhhhhhHHHHH---------------------------------
Confidence            999999988777777766632212         12223345566663                                 


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                            -++.+.|+..||++.+++.-.
T Consensus       825 ------kAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  825 ------KAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             ------HHHHHhcchHHHHHHHHHhhh
Confidence                  145777999999988887654

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=80.53  E-value=29  Score=36.25  Aligned_cols=193  Identities=13%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH  558 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~  558 (721)
                      +.++|.+..+.|||++++..+.+++..+|+  .+--.....+| ...|..-.+.+-+....+-......-.....+...+
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            567899999999999999999999999885  33333444332 344445555555544444333320000001111111


Q ss_pred             HHHHHh-hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-----------hHHHHHHHHHHH---cCChHHH
Q 004984          559 MLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-----------VLYFRQSLLLLR---LNCPEAA  623 (721)
Q Consensus       559 ~~l~~~-~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~-----------~~~~~~g~~L~~---lg~~eeA  623 (721)
                      ..+... .......                  +..++.-|--...++           ++|-.++.+...   ..-.+.|
T Consensus        84 ~kie~EL~~~C~ei------------------i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a  145 (236)
T PF00244_consen   84 KKIEDELIDICNEI------------------IRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA  145 (236)
T ss_dssp             HHHHHHHHHHHHHH------------------HHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------------------HHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence            222221 1111111                  223333222222222           222222222111   1123678


Q ss_pred             HHHHHHHHH-----hCCCChhHH---HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC--CCchh
Q 004984          624 MRSLQLARQ-----HAASDHERL---VYEGWIL-YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD--SSCSS  692 (721)
Q Consensus       624 l~~~~~Al~-----l~P~~~ea~---~~~G~~L-y~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~--~~~~~  692 (721)
                      ...|++|+.     +.|.++-.+   .|.+.-+ --+|+.++|+...++|+          -.|..--|+-=|  -.-|.
T Consensus       146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af----------d~a~~~l~~l~e~~~~d~~  215 (236)
T PF00244_consen  146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF----------DEAISELDTLSEESYKDST  215 (236)
T ss_dssp             HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH----------HHHHHGGGGSHTTTHHHHH
T ss_pred             HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HHHHhhhcccchhhhHHHH
Confidence            888888776     567776432   1222223 33799999999999984          344444443111  22356


Q ss_pred             hHHHHHHHhh
Q 004984          693 TVVSLLEDAL  702 (721)
Q Consensus       693 ~~~~~~~~~~  702 (721)
                      .++|||-|=|
T Consensus       216 ~ilqlLrdNl  225 (236)
T PF00244_consen  216 LILQLLRDNL  225 (236)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6788887643

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	721
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	4e-10
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-10
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	7e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	5e-04
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	5e-04

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
              +A  L              +  +    +    +  ++ +  +   AA S  FSAM  
Sbjct: 18  ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 65

Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
               ES    +++  N++ P   + +  F  TG        +  ++L  A+K+  ERLK 
Sbjct: 66  HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 122

Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
            C+  L S + S E+A E++  A   ++  L    +        D
Sbjct: 123 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 166

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
              +A  L              +  +    +    +  ++ +  +   AA S  FSAM  
Sbjct: 158 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205

Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
               ES    +++  N++ P   + +  F  TG        +  ++L  A+K+  ERLK 
Sbjct: 206 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 262

Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
            C+  L S + S E+A E++  A   ++  L    +        D
Sbjct: 263 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 306

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
              +A  L              +  +    +    +  ++ +  +   AA S  FSAM  
Sbjct: 9   ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56

Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
               ES    +++  N++ P   + +  F  TG        +  ++L  A+K+  ERLK 
Sbjct: 57  HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 113

Query: 273 ACDRKLAS 280
            C+  L S
Sbjct: 114 MCEDALCS 121

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 14/162 (8%)

Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
           A  Q G + L + + DEAE  F+  + +    +    A+   IK  ++            
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ------ 149

Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
                        Y         LDK   +    +     RA   + +     A++++  
Sbjct: 150 ----ALNAFGSGDY---TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202

Query: 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
               K    E        +  L D++ +L +V+  L L  D+
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCF 521
                A   DP     Y  RA+  +     +AAL ++ +++     F  A   L+     
Sbjct: 47  SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--LQRGHL- 103

Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
            L       A  D + +L  +P     +    A    +   E     + A         +
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEK---EAQSQLIKSDEMQRLRSQALNAFGS-GDY 159

Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
           ++      ++ + ++LE       L   ++   ++   P  A+  L+ A +    + E  
Sbjct: 160 TAA-----IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214

Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMK 668
                + Y     E  L +  E +++ 
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLD 241

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 76/572 (13%), Positives = 165/572 (28%), Gaps = 156/572 (27%)

Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN------LLLEILIFANKFCCE 268
           F ++  ++ D    ++      I+S   +   +   + +       L   L+   +   +
Sbjct: 25  FEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 269 RLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIF 328
           +  +   R     + S            E+  P +     ++++ +     ND    ++F
Sbjct: 81  KFVEEVLRINYKFLMSP--------IKTEQRQPSMMT---RMYIEQRDRLYND---NQVF 126

Query: 329 S--HANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSD----------KTVCFLERLLESA 376
           +  + +R              Y  L +  + L P  +          KT   L+  L   
Sbjct: 127 AKYNVSRLQ-----------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY- 174

Query: 377 ETDRQRLLAFH----QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL 432
               Q  + F      L          +  E + E      +       +R  +    KL
Sbjct: 175 --KVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 433 ---WAYEKLNSVISSVTPLGWMYQERSL------YCEGDKR-WEDLD---K--------- 470
                  +L  ++ S       Y+   L          + + W   +   K         
Sbjct: 226 RIHSIQAELRRLLKS-----KPYE-NCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQ 276

Query: 471 -ATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLAL 525
               L   T ++  +   S  +T   V++ L +        L    L     R       
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 526 --------EDYQAALCD-----VQAIL-TLSP-DYR-MFEGRVAASQLHMLVRE--HIDN 567
                   ++++   CD     +++ L  L P +YR MF+      +L +      HI  
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVF-PPSAHIPT 389

Query: 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627
             ++  W  +      V  + +    Y ++E    +  +      + L L        +L
Sbjct: 390 ILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLENEYAL 445

Query: 628 QLARQHAASDHERLV--YEGWILYDTSHCE----------------EGLRKAEESIQMKR 669
                     H  +V  Y     +D+                    + +   E     + 
Sbjct: 446 ----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 670 SFEAF-FLKAYALADSSQDSSCSSTVVSLLED 700
            F  F FL+   +   S   + S ++++ L+ 
Sbjct: 496 VFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 55/302 (18%), Positives = 95/302 (31%), Gaps = 94/302 (31%)

Query: 6   PSDSCKESQL----------NGFN-PQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPR 54
           P +    +            +G     +W  V   KL+ +         IES + V EP 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---------IESSLNVLEPA 369

Query: 55  IL-PNYK-----PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLR 108
                +      P       A I   L L  +        +   V       KL + SL 
Sbjct: 370 EYRKMFDRLSVFPPS-----AHIPTIL-LSLIWFDVIKSDVMVVV------NKLHKYSLV 417

Query: 109 KAWQKASTVHEKLVFGAWLKYEKQGEELIA--DLLINCDKCLQEF-------GPID---- 155
           +   K ST+    +   +L+ + + E   A    +++     + F         +D    
Sbjct: 418 EKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 156 --IASHLQTDINVAGSHETVSMSGDQVLRNVV--FRIHEEKIECDRQKFAALSAPFSAML 211
             I  HL+         E +++      R V   FR  E+KI   R    A +A      
Sbjct: 475 SHIGHHLKN----IEHPERMTL-----FRMVFLDFRFLEQKI---RHDSTAWNAS----- 517

Query: 212 NGSFMESLCEDIDLSENNISPSG------LRIISDFSVTGSLNGVTPNLLLEILIFANKF 265
            GS + +L + +   +  I  +       +  I DF     L  +  NL+       +K+
Sbjct: 518 -GSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLIC------SKY 564

Query: 266 CC 267
             
Sbjct: 565 TD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 36/274 (13%), Positives = 85/274 (31%), Gaps = 76/274 (27%)

Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLAL 525
           ++ D     D            S+++K+ ++  +   + + G       L  +       
Sbjct: 31  DNFDCKDVQDMP---------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-----QE 76

Query: 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR-WSSV 584
           E  Q  + +V     L  +Y+        S +     E      +   +++  DR ++  
Sbjct: 77  EMVQKFVEEV-----LRINYKFL-----MSPIK---TEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA-----AM----RSLQLARQHAA 635
                 +V          +  L  RQ+LL LR   P        +    ++  +A     
Sbjct: 124 QVFAKYNV-------SRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTW-VALD-VC 171

Query: 636 SDHERL------VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689
             ++        ++  W+  +  +C       E  ++M +             D +  S 
Sbjct: 172 LSYKVQCKMDFKIF--WL--NLKNC----NSPETVLEMLQKL-------LYQIDPNWTSR 216

Query: 690 CSSTV-VSLLEDALKCPSDRLRK--GTEQSRKCL 720
              +  + L   +++     LR+   ++    CL
Sbjct: 217 SDHSSNIKLRIHSIQ---AELRRLLKSKPYENCL 247

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 174 SMSGDQVLRNVVFRI----HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENN 229
           SM  ++++ +V F +        +   +   A  S+ F AM  G   E    +I + +  
Sbjct: 1   SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD-- 57

Query: 230 ISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
           + P+   I+  +  +  ++ +  + +L  L  A K+    L  AC   L +
Sbjct: 58  VEPAAFLILLKYMYSDEID-LEADTVLATLYAAKKYIVPALAKACVNFLET 107

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 14/162 (8%)

Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
           A  Q G + L + + DEAE  F+  + +         A    +K  ++            
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ------ 126

Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
                    + + Y         LDK   +    +     RA   + +     A++++  
Sbjct: 127 ----ALDAFDGADY---TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179

Query: 505 ILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
               K    E        +  L D++ +L +V+  L L  D+
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)

Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442
           A    G           A+    A    +    +    L  L   K  +  A E L    
Sbjct: 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHF 171

Query: 443 SSVTPLGWMYQERSLYCEGDKRW-------EDLDKATALDPTLSYPYMYRASSLMTKQNV 495
                  W +     Y               D    T+L   LS    Y     ++  ++
Sbjct: 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231

Query: 496 EAALAEINRILGFKLALE 513
           ++A A       FKLA+ 
Sbjct: 232 DSATAL------FKLAVA 243

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 16/164 (9%)

Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
              Q     +   +  +A   F   +             +   + +     +K + + S 
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIA----------LNIDRTEMYYWTNVDKNSEISSK 55

Query: 445 VTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503
           +   L   Y++   Y   DK +    +     P         A   + +   + AL    
Sbjct: 56  LATELALAYKKNRNY---DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112

Query: 504 RILGF--KLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
           +IL          + L   ++L  E  +  L      L+     
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 355 AMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NA 412
            + L+   D+T  +    ++       +L    +L       + YD+A   ++  +    
Sbjct: 30  TIALNI--DRTEMYYWTNVDKNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQKAP 85

Query: 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP--------LGWMYQERSLYCEGDKR 464
            ++  +   A +   +G +  A      ++  +          LG  Y   +      K+
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTAEQE--KKK 142

Query: 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506
            E   K  +    + Y       S +     E A   + +++
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 4/99 (4%)

Query: 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507
                Q         +    L +A  L P                + V+  L  + +  G
Sbjct: 282 NSGGKQALETV---QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

Query: 508 FKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
                   +        ALE  Q  L  +     L+P+ 
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 15/170 (8%)

Query: 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHK-LWAYEK-LNSVISS 444
           HQ    R L      A  L    +       +  +A+ G +   + + A+   L     +
Sbjct: 8   HQWSGARALEALLTVAGELRGPPLQL-DTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66

Query: 445 VTP--------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496
           +TP             Q         +    L +A  L P                + V+
Sbjct: 67  LTPEQVVAIASHDGGKQALETV---QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123

Query: 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
             L  + +  G     +  +        ALE  QA L  +     L+P+ 
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243
           VV  +  E+    +    A S  F ++       +L       E  I+P G  I+ DF  
Sbjct: 32  VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMY 89

Query: 244 TGSLNGVTPNLLLEILIFAN--------KFCCERLKDA 273
           T  LN +    ++ ++  A           C + +K +
Sbjct: 90  TSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 169 SHETVSMSGDQVLRN------VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED 222
            H +  +SG    R       VV  +   +    R   AA S  F  +     +      
Sbjct: 7   DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66

Query: 223 IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
            ++    +S   L  + DF+ T +L  V+   + +IL  A       +   C
Sbjct: 67  YEIDF--VSAEALTALMDFAYTATLT-VSTANVGDILSAARLLEIPAVSHVC 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	721
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.94
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.91
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.87
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.86
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.85
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.85
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.85
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.84
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.84
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.84
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.84
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.83
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.82
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.81
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.81
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.8
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.73
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.64
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.59
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.52
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.5
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.5
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.47
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.44
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.43
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.42
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.41
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.41
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.33
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.32
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.3
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.29
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.29
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.24
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.21
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.19
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.14
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.06
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.05
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.02
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.99
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.97
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.95
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.87
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.79
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.76
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.67
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	98.61
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.6
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.55
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.44
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.44
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.41
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.37
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.33
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.31
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.3
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.29
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.12
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.95
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.83
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.8
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.69
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.42
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	97.11
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.53
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.53
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.27
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.87
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.72
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	95.6
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	95.53
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.15
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	95.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.85
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	94.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.61
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	94.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.94
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.35
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.17
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.53
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.49
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.88
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.61
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.48
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	81.29

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.3e-32  Score=296.72  Aligned_cols=320  Identities=14%  Similarity=0.088  Sum_probs=223.8

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+....+++.+++..+.   ...+++.+|.++...|++++|+..|++|++++|  ..++.++|.++...|++++|+..|
T Consensus        48 ~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  124 (388)
T 1w3b_A           48 RLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY  124 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            444555666665554332   255677888888888888888888888887744  345777888888888888888888


Q ss_pred             HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984          439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE  513 (721)
Q Consensus       439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~  513 (721)
                      .++++.+|+...++..+|.    .++.++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ ..
T Consensus       125 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  204 (388)
T 1w3b_A          125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD  204 (388)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            8888888887777776654    256688888888888888888888888888888888888888888888888886 67


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhccccc
Q 004984          514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSV  584 (721)
Q Consensus       514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~  584 (721)
                      .+..+|.++...|++++|+..|+++++++|++.... ..+.+....+..+...+.+++        .++|..+...+...
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            777788888888888888888888888888774322 122222222222222222221        22334444444444


Q ss_pred             cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       585 dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      +++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|+++..+|++++|+..|++
T Consensus       285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444 566777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcCCCHH-HHHHHHHHhhc
Q 004984          664 SIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       664 Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      +++++|++. +|++.|.++..
T Consensus       365 a~~~~p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          365 AIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHhhCCCCHHHHHhHHHHHHH
Confidence            777777776 77777776643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.2e-31  Score=283.55  Aligned_cols=333  Identities=13%  Similarity=0.044  Sum_probs=281.3

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...++.+.+..++.   ..++..+|.++...|++++|+..+++|++.+|  ..++..+|.++...|++++|+..|
T Consensus        14 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   90 (388)
T 1w3b_A           14 DFEAAERHCMQLWRQEPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445566666666554433   45678899999999999999999999999865  457889999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 004984          439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE  513 (721)
Q Consensus       439 ~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~  513 (721)
                      +++++..|+...+|.++|.    .++.++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|+ +.
T Consensus        91 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  170 (388)
T 1w3b_A           91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV  170 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999888888764    366699999999999999999999999999999999999999999999999997 78


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH---------------HHHHHhhh
Q 004984          514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI---------------ADCWLQLY  578 (721)
Q Consensus       514 ~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------------A~~~~~l~  578 (721)
                      .+.++|.++...|++++|+..|+++++++|++...      ...++.+.....++++               +.+|..+.
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            88999999999999999999999999999998542      2233333333333322               34455555


Q ss_pred             hccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984          579 DRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      ......+++. |+..++++++++|.++.+|+++|.++.++|++++|+..|+++++++|++++++.++|.++..+|++++|
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            5555566666 888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984          658 LRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS  706 (721)
Q Consensus       658 l~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (721)
                      +..|++++++.|++. +++..|.++...+-    -..-+..+++|++.-.
T Consensus       325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          325 VRLYRKALEVFPEFAAAHSNLASVLQQQGK----LQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHTTTC----CHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCC
Confidence            999999999999877 99999999887652    3456777888887533

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.97  E-value=1.7e-31  Score=277.45  Aligned_cols=200  Identities=16%  Similarity=0.206  Sum_probs=165.0

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP  252 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~  252 (721)
                      +..++.+|||+|+|||++|+|||.|||++|+||++||++++.  |+...+|+|+  ++++++|+.+++|+|||++. ++.
T Consensus        25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~  101 (256)
T 3hve_A           25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE  101 (256)
T ss_dssp             CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-
T ss_pred             HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccH
Confidence            567889999999999999999999999999999999999988  6778899999  49999999999999999999 999


Q ss_pred             HHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHH
Q 004984          253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV  324 (721)
Q Consensus       253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v  324 (721)
                      +++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+..        .|+.+.+
T Consensus       102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l  180 (256)
T 3hve_A          102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL  180 (256)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred             hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence            9999999999999999999999999999995 799999999999999999999999999988864        7788899


Q ss_pred             HHHhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hHHHHHHH
Q 004984          325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLL  384 (721)
Q Consensus       325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~l  384 (721)
                      .++++++++.     |..|..++.++++|+.++...|.+++..||+. +|++   +.++.+.+
T Consensus       181 ~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~-VRf~~l~~~~l~~~v  237 (256)
T 3hve_A          181 KEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSA-LWVSGLDSSYLREQM  237 (256)
T ss_dssp             HHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHH-HHHHTTCC-CHHHHH
T ss_pred             HHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHH
Confidence            9999999985     78889999999999999998899999999988 5544   55555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=6.7e-28  Score=252.57  Aligned_cols=303  Identities=12%  Similarity=0.002  Sum_probs=254.8

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...+++++...+..   ..+++.+|.++...|++++|+..|+++++.+  ...++..+|.++...|++++|+..|
T Consensus        18 ~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   94 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF   94 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence            5667778888877655433   5688999999999999999999999999984  4567889999999999999999999


Q ss_pred             HHHHhcCC---CcHHHHHHHh----------------hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984          439 NSVISSVT---PLGWMYQERS----------------LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL  499 (721)
Q Consensus       439 ~~aI~~~~---~~~~ay~~rg----------------~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl  499 (721)
                      .++++..|   +...++...+                ..++.++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  174 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  174 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            99999999   7666665542                1356699999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      ..++++++++|+ +..+..+|.++..+|++++|+..|+++++++|++..      +......+.........+.++.   
T Consensus       175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~---  245 (359)
T 3ieg_A          175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR------CFAHYKQVKKLNKLIESAEELI---  245 (359)
T ss_dssp             HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH------HHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999996 888889999999999999999999999999999844      2222222222222223332222   


Q ss_pred             hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                          ..+++. |+..++++++.+|.++.    ++.++|.++..+|++++|+..++++++++|+++++++++|.+++.+|+
T Consensus       246 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          246 ----RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             ----HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ----HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence                123333 58899999999999984    467899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984          654 CEEGLRKAEESIQMKRSFE-AFFLKAY  679 (721)
Q Consensus       654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~  679 (721)
                      +++|+..|++|++++|++. ++...+-
T Consensus       322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            9999999999999999977 5554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.7e-28  Score=255.11  Aligned_cols=276  Identities=10%  Similarity=-0.003  Sum_probs=250.2

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----  458 (721)
                      .+..+|..+...|++++|+..|+++++.++  ..++..++.++...|++++|+..+.++++.+|+.+.++..+|.+    
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV  103 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            456788888999999999999999999854  45677789999999999999999999999999999999888753    


Q ss_pred             C-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          459 C-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       459 ~-~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      + ..++|+..|++|++++|+++.+|..+|.++..+|++++|+..|++++++.|+ ...+..+|.++..+|++++|+..|+
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5 6799999999999999999999999999999999999999999999999996 6778889999999999999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC---------CCChhHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---------APKGVLY  607 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~---------P~~~~~~  607 (721)
                      ++++++|++.      .+...++.+.....++++|                  +..+++++++.         |..+.++
T Consensus       184 ~al~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~  239 (330)
T 3hym_B          184 QALSIAPEDP------FVMHEVGVVAFQNGEWKTA------------------EKWFLDALEKIKAIGNEVTVDKWEPLL  239 (330)
T ss_dssp             HHHTTCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred             HHHHhCCCCh------HHHHHHHHHHHHcccHHHH------------------HHHHHHHHHHhhhccccccccHHHHHH
Confidence            9999999983      3455555555566666666                  78899999987         8888999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS  684 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~  684 (721)
                      +++|.++..+|++++|+..++++++++|++++++.++|++++.+|++++|+..|+++++++|++. ++...|.++.-.
T Consensus       240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  317 (330)
T 3hym_B          240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY  317 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887 999999888533

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=8.1e-28  Score=262.72  Aligned_cols=304  Identities=12%  Similarity=0.001  Sum_probs=255.8

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+..+++++++..+.   ...+++.+|.++...|++++|+..|+++++.+  ...++..+|.++..+|++++|+..|
T Consensus        41 ~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  117 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF  117 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            566777888887765443   36788999999999999999999999999985  4557888999999999999999999


Q ss_pred             HHHHhcCCCcH---HHHHHH------------h----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984          439 NSVISSVTPLG---WMYQER------------S----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL  499 (721)
Q Consensus       439 ~~aI~~~~~~~---~ay~~r------------g----~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl  499 (721)
                      .++++..|+..   .++...            |    ..++.++|+..|+++++++|+++.++.++|.++...|++++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  197 (450)
T 2y4t_A          118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  197 (450)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence            99999999876   554322            1    1245599999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      ..|+++++.+|+ +..+..+|.++...|++++|+..|+++++++|++....      .....+.........+.+     
T Consensus       198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~-----  266 (450)
T 2y4t_A          198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF------AHYKQVKKLNKLIESAEE-----  266 (450)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHHHHHHHHHH-----
Confidence            999999999996 88889999999999999999999999999999985422      222111111122222222     


Q ss_pred             hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       579 ~~~~~~dd~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                        ....+++. |+..++++++++|.++.    ++.++|.++.++|++++|+..++++++++|++++++.++|.++..+|+
T Consensus       267 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          267 --LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             --HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             --HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence              22223333 58899999999999954    899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984          654 CEEGLRKAEESIQMKRSFE-AFFLKAYA  680 (721)
Q Consensus       654 ~deAl~~ye~Ai~i~~~~~-a~~~~~~~  680 (721)
                      +++|+..|+++++++|+.. ++.+.|.+
T Consensus       345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          345 YDEAIQDYETAQEHNENDQQIREGLEKA  372 (450)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            9999999999999999987 88888843

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.97  E-value=2.6e-31  Score=279.67  Aligned_cols=200  Identities=19%  Similarity=0.247  Sum_probs=173.5

Q ss_pred             ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCC----CCCHHHHHHHhhhhccCCC
Q 004984          175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSL  247 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~---~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~----~is~~~~~~lL~f~Ytg~l  247 (721)
                      +..++.+|||+|+||   |++|+|||.|||++|+||++||+++|+|+.+.+|+|++.    ++++++|+.+++|+|||++
T Consensus        26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~  105 (279)
T 3i3n_A           26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI  105 (279)
T ss_dssp             HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE
T ss_pred             HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc
Confidence            446788999999998   999999999999999999999999999999999999821    5999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CC
Q 004984          248 NGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CL  319 (721)
Q Consensus       248 ~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L  319 (721)
                      . ++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+..        .|
T Consensus       106 ~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L  183 (279)
T 3i3n_A          106 R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL  183 (279)
T ss_dssp             E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred             c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence            9 9999999999999999999999999999999995 799999999999999999999999999888754        67


Q ss_pred             ChHHHHHHhccccccchhhhcccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hHHHHH
Q 004984          320 NDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQR  382 (721)
Q Consensus       320 ~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~  382 (721)
                      +.+.+.++++++++.     |..|..++.++++|+.++...|..++.+||+. +|++   +.++.+
T Consensus       184 ~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~-VRf~l~~~~~L~~  243 (279)
T 3i3n_A          184 PFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL-LRLSQMKPTYLTR  243 (279)
T ss_dssp             CHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT-SCGGGSCHHHHHH
T ss_pred             CHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence            889999999999985     88899999999999999988888899999987 5544   545443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=3.1e-27  Score=247.52  Aligned_cols=297  Identities=18%  Similarity=0.094  Sum_probs=260.4

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-  458 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~-  458 (721)
                      +..++..+|..+...|++++|+..|+++++.+  ...++..+|.++...|++++|+..+.++++.+|+.+.++..+|.. 
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            35677899999999999999999999999985  456788999999999999999999999999999988888888753 


Q ss_pred             ---CChhHHHHHHHHHHhcCC---CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984          459 ---CEGDKRWEDLDKATALDP---TLSYPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF  519 (721)
Q Consensus       459 ---~~~~eAl~d~~kAieLdP---~~~~ay~~r------------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~  519 (721)
                         ++.++|+..|+++++++|   ++..++..+            |.++...|++++|+..|+++++.+|+ +..+..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence               677999999999999999   999999888            79999999999999999999999996 78888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984          520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES  599 (721)
Q Consensus       520 ~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l  599 (721)
                      .++..+|++++|+..|+++++++|++.      .+...++.+.....++++|                  +..++++++.
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A------------------~~~~~~a~~~  217 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKL  217 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhh
Confidence            999999999999999999999999984      3444555555555566666                  7899999999


Q ss_pred             CCCChhHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          600 DAPKGVLYF------------RQSLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       600 ~P~~~~~~~------------~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      +|.++.++.            .+|.++.+.|++++|+..++++++..|+++    .++.++|.++..+|++++|+..|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  297 (359)
T 3ieg_A          218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE  297 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999765            458899999999999999999999999988    4577899999999999999999999


Q ss_pred             HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 004984          664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS  706 (721)
Q Consensus       664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (721)
                      +++++|+.. +++..|.++...+    --...+..++.|++.-.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          298 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCT
T ss_pred             HHHhCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCC
Confidence            999999666 9999999987654    34556777777776533

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=8.5e-29  Score=272.11  Aligned_cols=251  Identities=10%  Similarity=-0.050  Sum_probs=193.3

Q ss_pred             chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCC-hhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 004984          414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE-GDKRWEDLDKATALDPTLSYPYMYRASS  488 (721)
Q Consensus       414 ~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~-~~eAl~d~~kAieLdP~~~~ay~~rg~~  488 (721)
                      +..++.++|.++..+|++++|++.|+++|+++|++..+|.++|.    .++ .++|+.+|++||+++|+++.+|++||.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34455666666666666666666666666666666666666654    244 6777888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh-hh
Q 004984          489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-ID  566 (721)
Q Consensus       489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~-~~  566 (721)
                      +..+|++++|+..|++||+++|+ +.+|++||+++..+|++++|+.+|+++++++|++..      +...++.+... .+
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~------a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS------VWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTC
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcC
Confidence            88888888888888888888885 777888888888888888888888888888888733      33333333222 22


Q ss_pred             hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg--~~eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                      ..++|.             ...++..++++|+++|+++.+|+++|.++..+|  ++++|+..++++ +.+|++..++..+
T Consensus       250 ~~~eA~-------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L  315 (382)
T 2h6f_A          250 YNDRAV-------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL  315 (382)
T ss_dssp             SCSHHH-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred             cchHHH-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH
Confidence            223331             001257899999999999999999999999998  689999999998 9999999999999


Q ss_pred             HHHHHhcC---------CHHHHHHHHHHH-HhcCCCHH-HHHHHHHHhhcc
Q 004984          645 GWILYDTS---------HCEEGLRKAEES-IQMKRSFE-AFFLKAYALADS  684 (721)
Q Consensus       645 G~~Ly~~G---------~~deAl~~ye~A-i~i~~~~~-a~~~~~~~~~~~  684 (721)
                      |+++..+|         .+++|+..|+++ ++++|... .|..++-+|...
T Consensus       316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            99999985         369999999999 99999998 788788777654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=6.4e-27  Score=255.62  Aligned_cols=295  Identities=18%  Similarity=0.092  Sum_probs=258.3

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--  457 (721)
                      +..+++.+|..+...|++++|+..|+++++..  ...++..+|.++...|++++|+..|.++++..|+...++..+|.  
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            46778899999999999999999999999884  45678889999999999999999999999999999988888875  


Q ss_pred             --cCChhHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984          458 --YCEGDKRWEDLDKATALDPTLS---YPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF  519 (721)
Q Consensus       458 --~~~~~eAl~d~~kAieLdP~~~---~ay~~r------------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~  519 (721)
                        .++.++|+..|+++++++|++.   .++..+            |.++...|++++|+..|+++++++|+ +..+..+|
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  184 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA  184 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence              3677999999999999999998   776655            77799999999999999999999996 78888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 004984          520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES  599 (721)
Q Consensus       520 ~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l  599 (721)
                      .++..+|++++|+..|+++++++|++..      +...++.+.....++++|                  +..+++++++
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~  240 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELS------------------LSEVRECLKL  240 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHCSCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHh
Confidence            9999999999999999999999999843      444444444455555555                  8899999999


Q ss_pred             CCCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          600 DAPKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       600 ~P~~~~~~~~~------------g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      +|.++..+...            |.++...|++++|+..|+++++++|+++    +++.++|.++..+|++++|+..+++
T Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  320 (450)
T 2y4t_A          241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE  320 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999998776            9999999999999999999999999985    4899999999999999999999999


Q ss_pred             HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984          664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC  704 (721)
Q Consensus       664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (721)
                      ++++.|+.. +|+..|.++...+    --..-+..++.|++.
T Consensus       321 a~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          321 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred             HHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHh
Confidence            999999765 9999999997654    234456666666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.4e-26  Score=262.74  Aligned_cols=293  Identities=10%  Similarity=-0.001  Sum_probs=258.0

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 004984          364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSV  441 (721)
Q Consensus       364 ~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~a  441 (721)
                      ....+++++.+.+    .+...++.+|..+...|++++|+..|+++++.+  +..++..++.++...|++++|+..+.++
T Consensus       290 ~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          290 RAEDYLSSINGLE----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             HHHHHHHTSTTGG----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4455666655543    346788899999999999999999999999875  4567888999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 004984          442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE  516 (721)
Q Consensus       442 I~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~  516 (721)
                      ++..|+...++..+|.    .++.++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++..|+ ...+.
T Consensus       366 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  445 (597)
T 2xpi_A          366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL  445 (597)
T ss_dssp             HHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred             HhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            9999998888877754    367799999999999999999999999999999999999999999999999995 78888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                      .++.++...|++++|+..|+++++++|++..      +...++.+.....++++|                  +..++++
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~  501 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTA------------------INHFQNA  501 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHH
Confidence            8999999999999999999999999999843      344444444555566666                  7889999


Q ss_pred             HHh------CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          597 LES------DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       597 L~l------~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      +++      +|.+ +.+|+++|.++.++|++++|++.++++++++|+++.+++.+|.++...|++++|+..|+++++++|
T Consensus       502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            998      6765 789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHhhcc
Q 004984          670 SFE-AFFLKAYALADS  684 (721)
Q Consensus       670 ~~~-a~~~~~~~~~~~  684 (721)
                      +.. ++++.|.+++.+
T Consensus       582 ~~~~~~~~l~~~~~~~  597 (597)
T 2xpi_A          582 NEIMASDLLKRALEEN  597 (597)
T ss_dssp             TCHHHHHHHHHTTC--
T ss_pred             CChHHHHHHHHHHhcC
Confidence            987 999999888753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.6e-26  Score=254.85  Aligned_cols=319  Identities=10%  Similarity=0.027  Sum_probs=246.1

Q ss_pred             HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------
Q 004984          347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-------  413 (721)
Q Consensus       347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~------~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-------  413 (721)
                      .+-.|.+|.+... +.+.+.+.+++++++...      .....+++.++|.++..+|++++|+.+|++|+++.       
T Consensus        53 ~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           53 MCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            4567888887754 677888888887765322      12235788999999999999999999999999872       


Q ss_pred             ---chhhHhhHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHh-------hcCChhHHHHHHHHHHhcCCCChHH
Q 004984          414 ---HIYSIAGLARLGYIK--GHKLWAYEKLNSVISSVTPLGWMYQERS-------LYCEGDKRWEDLDKATALDPTLSYP  481 (721)
Q Consensus       414 ---~~~A~~~lg~~~~~~--G~~~~A~~~~~~aI~~~~~~~~ay~~rg-------~~~~~~eAl~d~~kAieLdP~~~~a  481 (721)
                         .+.++.++|.++...  +++++|+..|.++++++|+++.++...+       .+++.++|+..|++|++++|+++.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~  211 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL  211 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence               234556667666554  5799999999999999999887776654       4567799999999999999999999


Q ss_pred             HHHHHHHHHhc----CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 004984          482 YMYRASSLMTK----QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ  556 (721)
Q Consensus       482 y~~rg~~l~~l----g~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~  556 (721)
                      +.++|..+..+    |++++|+..|++++.++|+ +..+.++|.++...|++++|+..|+++++++|++...+...+   
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---  288 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG---  288 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH---
Confidence            99999887665    5778999999999999996 788889999999999999999999999999999865333222   


Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                         .+.........+..+............+. |+..+.++++++|.++.+++++|.++..+|++++|+..|++|++++|
T Consensus       289 ---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          289 ---CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             ---HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             ---HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence               22111111111111111111111112222 57899999999999999999999999999999999999999999999


Q ss_pred             CChhH---HHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          636 SDHER---LVYEGW-ILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       636 ~~~ea---~~~~G~-~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ++.+.   +++.|. .++.+|++++|+..|++|++++|...
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~  406 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR  406 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence            87764   566775 46789999999999999999988754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.96  E-value=2.3e-27  Score=251.67  Aligned_cols=271  Identities=12%  Similarity=0.001  Sum_probs=228.0

Q ss_pred             HHHhccchHHHHH-HHHHHHhccc------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCC
Q 004984          392 VRLLRKEYDEAEH-LFEAAVNAGH------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE  460 (721)
Q Consensus       392 ~~~~~g~y~eA~~-~f~~AL~~~~------~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~  460 (721)
                      .+...|+|++|+. .|++|+++.+      ..+++.+|.++...|++++|+..|+++++.+|+.+.++..+|.    .++
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5667789999999 9999998843      3457889999999999999999999999999999999988875    367


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH----------------HHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE----------------LRFCFFL  523 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~----------------~R~~~~~  523 (721)
                      .++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+.                ..+.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            799999999999999999999999999999999999999999999999996 43332                345555 


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 004984          524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK  603 (721)
Q Consensus       524 ~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~  603 (721)
                      ..|++++|+..|+++++++|+...    ..+...++.+.....++++|                  +..++++++++|.+
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~  250 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKA------------------VDCFTAALSVRPND  250 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred             hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCC
Confidence            999999999999999999999311    23444455555555566665                  88999999999999


Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------------  671 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------------  671 (721)
                      +.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+++.+|++++|+..|++++++.|+.            
T Consensus       251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  330 (368)
T 1fch_A          251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE  330 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999987            


Q ss_pred             HHHHHHHHHhhccC
Q 004984          672 EAFFLKAYALADSS  685 (721)
Q Consensus       672 ~a~~~~~~~~~~~~  685 (721)
                      .+|+..|.++...+
T Consensus       331 ~~~~~l~~~~~~~g  344 (368)
T 1fch_A          331 NIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            59999998887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=255.82  Aligned_cols=335  Identities=13%  Similarity=-0.003  Sum_probs=248.0

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...+++++...+    +..+++.+|.++...|++++|+..|+++++.+|  ..++..+|.++..+|++++|+..|
T Consensus        21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~   96 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL   96 (514)
T ss_dssp             CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45667777777776544    256778888888889999999999998888854  446778888888999999998888


Q ss_pred             HHHHhcCCC-----------------------------------------------------------------------
Q 004984          439 NSVISSVTP-----------------------------------------------------------------------  447 (721)
Q Consensus       439 ~~aI~~~~~-----------------------------------------------------------------------  447 (721)
                      .+++...|.                                                                       
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (514)
T 2gw1_A           97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT  176 (514)
T ss_dssp             HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence            888877652                                                                       


Q ss_pred             --------cHHHHHHHhh-------cCChhHHHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHhcCCHHHH
Q 004984          448 --------LGWMYQERSL-------YCEGDKRWEDLDKATA-----L--D-------PTLSYPYMYRASSLMTKQNVEAA  498 (721)
Q Consensus       448 --------~~~ay~~rg~-------~~~~~eAl~d~~kAie-----L--d-------P~~~~ay~~rg~~l~~lg~~~eA  498 (721)
                              .+.++..+|.       .++.++|+..|+++++     +  +       |+++.+|..+|.++...|++++|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  256 (514)
T 2gw1_A          177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA  256 (514)
T ss_dssp             CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence                    2555555544       3455888888888888     6  3       55577888888888888888888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH-------
Q 004984          499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI-------  570 (721)
Q Consensus       499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~-------  570 (721)
                      +..|+++++.+|+...+..+|.++...|++++|+..|+++++++|++.... ..+.+....+....+...+++       
T Consensus       257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  336 (514)
T 2gw1_A          257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE  336 (514)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence            888888888888855566788888888888888888888888888874422 222222222222222222222       


Q ss_pred             -HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHH
Q 004984          571 -ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLV  642 (721)
Q Consensus       571 -A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~  642 (721)
                       ..+|..+.......+++. |+..++++++.+|.++.+++++|.++..+|++++|+..++++++++|++.+      +++
T Consensus       337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  416 (514)
T 2gw1_A          337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV  416 (514)
T ss_dssp             CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence             234455555555556666 788888888888888888888888888888888888888888888888866      888


Q ss_pred             HHHHHHHh---cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          643 YEGWILYD---TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       643 ~~G~~Ly~---~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      ++|.+++.   +|++++|+..|++++++.|+.. +++..|.++...+    --...+..++.|++
T Consensus       417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE----DIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHH
Confidence            88888888   8888888888888888888776 8888888877554    23344555555554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=1.3e-26  Score=245.80  Aligned_cols=260  Identities=13%  Similarity=-0.009  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      ...++.+|..+...|++++|+..|+++++.+  +..++..+|.++...|++++|+..|.++++.+|+.+.++..+|.   
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4557789999999999999999999999984  45578889999999999999999999999999999999888875   


Q ss_pred             -cCChhHHHHHHHHHHhcCCCChHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHH
Q 004984          458 -YCEGDKRWEDLDKATALDPTLSYPYM----------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLEL  517 (721)
Q Consensus       458 -~~~~~eAl~d~~kAieLdP~~~~ay~----------------~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~  517 (721)
                       .++.++|+..|+++++++|++..++.                .+|.++ ..|++++|+..|+++++++|+   +..+..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence             36779999999999999999998887                567776 999999999999999999997   577788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 004984          518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML  597 (721)
Q Consensus       518 R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL  597 (721)
                      +|.++...|++++|+..|+++++++|++.      .+...++.+.....++++|                  +..+++++
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al  278 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRAL  278 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence            99999999999999999999999999983      3445555555556666666                  88999999


Q ss_pred             HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----------HERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-----------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +++|.++.+++++|.++.++|++++|+..+++|++++|++           +.++.++|.++..+|++++|...++++++
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            9999999999999999999999999999999999999999           89999999999999999999999998887


Q ss_pred             c
Q 004984          667 M  667 (721)
Q Consensus       667 i  667 (721)
                      +
T Consensus       359 ~  359 (368)
T 1fch_A          359 T  359 (368)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=4.2e-26  Score=254.54  Aligned_cols=326  Identities=11%  Similarity=0.030  Sum_probs=252.2

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHH
Q 004984          349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGY  426 (721)
Q Consensus       349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~  426 (721)
                      .-+..+..... +.+.+...++++++..++.   ..+++++|.++...|++++|+..|+++++++|  ..++..+|.++.
T Consensus        29 ~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           29 KNRGNHFFTAK-NFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHTT-CCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-cHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            33444444433 5667788888877765433   57888999999999999999999999998854  557788999999


Q ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHH-----------------------------------------------------
Q 004984          427 IKGHKLWAYEKLNSVISSVTPLGWMYQ-----------------------------------------------------  453 (721)
Q Consensus       427 ~~G~~~~A~~~~~~aI~~~~~~~~ay~-----------------------------------------------------  453 (721)
                      .+|++++|+..|+ ++...|+....+.                                                     
T Consensus       105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T 3fp2_A          105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV  183 (537)
T ss_dssp             HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred             HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence            9999999999985 7766665332210                                                     


Q ss_pred             ---------------HHhh------------cCChhHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCCHHHHH
Q 004984          454 ---------------ERSL------------YCEGDKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQNVEAAL  499 (721)
Q Consensus       454 ---------------~rg~------------~~~~~eAl~d~~kAieLdP~~~~-------ay~~rg~~l~~lg~~~eAl  499 (721)
                                     ..+.            .+..++|+..|+++++++|+++.       +|..+|.++...|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  263 (537)
T 3fp2_A          184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ  263 (537)
T ss_dssp             CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence                           0000            01348899999999999999855       6888999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 004984          500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD  579 (721)
Q Consensus       500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~  579 (721)
                      ..|+++++++|++..+..+|.++...|++++|+..|+++++++|++..      +...++.+.....++++|        
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A--------  329 (537)
T 3fp2_A          264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQDYKNA--------  329 (537)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH--------
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHhcCCHHHH--------
Confidence            999999999999888888999999999999999999999999999843      445555555555666666        


Q ss_pred             ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004984          580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR  659 (721)
Q Consensus       580 ~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~  659 (721)
                                +..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|+.
T Consensus       330 ----------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          330 ----------KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             ----------HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence                      8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHH-------HHHHHHHHhhcc------CCCCCchhhHHHHHHHhhc
Q 004984          660 KAEESIQMKRSFE-------AFFLKAYALADS------SQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       660 ~ye~Ai~i~~~~~-------a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  703 (721)
                      .|++++++.|+..       .++.+|.++...      .++..--...+..++.|++
T Consensus       400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence            9999999987653       355566555432      2222333444555555554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=1.2e-26  Score=247.43  Aligned_cols=259  Identities=12%  Similarity=-0.040  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----  457 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----  457 (721)
                      ..++.+|..+...|++++|+..|+++++.+  ...++..+|.++..+|++++|+..|.++++.+|+.+.+|..+|.    
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            445677777777777777777777777763  34456667777777777777777777666666666666665553    


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHh
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMYR----------ASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLA  524 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~r----------g~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~  524 (721)
                      .++.++|+..|+++++++|++..++.++          |.++..+|++++|+..|+++++++|+   +..+..+|.++..
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  225 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL  225 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence            2455666666666666666665555554          66666666666666666666666664   4555566666666


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG  604 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~  604 (721)
                      +|++++|+..|+++++++|++.      .+...++.+.....++++|                  +..++++++++|.++
T Consensus       226 ~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~  281 (365)
T 4eqf_A          226 SGEFNRAIDAFNAALTVRPEDY------SLWNRLGATLANGDRSEEA------------------VEAYTRALEIQPGFI  281 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCch
Confidence            6666666666666666666652      2333333333333444444                  556666666666666


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      .+++++|.++..+|++++|+..|++|++++|+            +..++.++|.++..+|+.+.+....++++.
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            66666666666666666666666666666665            355666666666666666666655555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-25  Score=248.99  Aligned_cols=275  Identities=16%  Similarity=0.123  Sum_probs=245.5

Q ss_pred             HHHHHHHHHHHHh---ccchHHHHHHHHHHHh-----c-----------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984          383 LLAFHQLGCVRLL---RKEYDEAEHLFEAAVN-----A-----------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS  443 (721)
Q Consensus       383 ~la~~~lG~~~~~---~g~y~eA~~~f~~AL~-----~-----------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~  443 (721)
                      ..+++.+|.....   .|++++|+..|+++++     +           ....++..+|.++...|++++|+..++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5566788888886   8999999999999999     3           3455788899999999999999999999999


Q ss_pred             cCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 004984          444 SVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR  518 (721)
Q Consensus       444 ~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R  518 (721)
                      ..|+ +.++..+|.    .++.++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  344 (514)
T 2gw1_A          266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL  344 (514)
T ss_dssp             HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred             hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence            9999 888888875    366699999999999999999999999999999999999999999999999996 7888889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE  598 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~  598 (721)
                      |.++..+|++++|+..|+++++++|++..      +...++.+.....++++|                  +..++++++
T Consensus       345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~a~~  400 (514)
T 2gw1_A          345 ACLAYRENKFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKA------------------LKQYDLAIE  400 (514)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHcccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHH
Confidence            99999999999999999999999999843      444444444555555555                  889999999


Q ss_pred             hCCCChh------HHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          599 SDAPKGV------LYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       599 l~P~~~~------~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ++|.++.      +++++|.++..   +|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|
T Consensus       401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            9999976      99999999999   99999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHhh
Q 004984          670 SFE-AFFLKAYALA  682 (721)
Q Consensus       670 ~~~-a~~~~~~~~~  682 (721)
                      ++. ++....+..+
T Consensus       481 ~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          481 TMEEKLQAITFAEA  494 (514)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            988 6666655543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=2.5e-26  Score=245.11  Aligned_cols=245  Identities=10%  Similarity=-0.059  Sum_probs=211.0

Q ss_pred             hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 004984          416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT  491 (721)
Q Consensus       416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~  491 (721)
                      .+++.+|.++...|++++|+..|+++++.+|+.+.+|..+|.    .++.++|+..|++|++++|+++.+|.++|.++..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            348889999999999999999999999999999999988875    3677999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-HHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 004984          492 KQNVEAALAEINRILGFKLA-LECLELR----------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML  560 (721)
Q Consensus       492 lg~~~eAl~~~~kAL~l~P~-~~~~~~R----------~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~  560 (721)
                      +|++++|+..|+++++++|+ ...+..+          |.++..+|++++|+..|+++++++|+...    ..+...++.
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~  221 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGV  221 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHH
Confidence            99999999999999999996 4444444          78999999999999999999999999311    224444555


Q ss_pred             HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 004984          561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER  640 (721)
Q Consensus       561 l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea  640 (721)
                      +.....++++|                  +..++++++++|.++.+|+++|.++..+|++++|+..|++|++++|+++.+
T Consensus       222 ~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  283 (365)
T 4eqf_A          222 LFHLSGEFNRA------------------IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS  283 (365)
T ss_dssp             HHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence            55555666666                  889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHhh
Q 004984          641 LVYEGWILYDTSHCEEGLRKAEESIQMKRS-------------FEAFFLKAYALA  682 (721)
Q Consensus       641 ~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~-------------~~a~~~~~~~~~  682 (721)
                      ++++|.++..+|++++|+..|++|+++.|+             ..+|...|.++.
T Consensus       284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (365)
T 4eqf_A          284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS  338 (365)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999987             346777666653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=1.3e-25  Score=250.46  Aligned_cols=278  Identities=12%  Similarity=0.093  Sum_probs=214.6

Q ss_pred             cchHHHHHHHHHHHhccch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhH
Q 004984          397 KEYDEAEHLFEAAVNAGHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK  463 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~---------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~e  463 (721)
                      |++++|+..|+++++..+.         .++..+|.++...|++++|+..+.++++..|+ ..++..+|..    ++.++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  294 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE  294 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence            4566666666666665432         24667888899999999999999999999998 8888888753    56699


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      |+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++
T Consensus       295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999996 7778889999999999999999999999999


Q ss_pred             CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHH------HHHHHHHH
Q 004984          543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF------RQSLLLLR  616 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~------~~g~~L~~  616 (721)
                      |++..      +...++.+.....++++|                  +..++++++++|.+...+.      ++|.++..
T Consensus       375 ~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~  430 (537)
T 3fp2_A          375 PTLPE------VPTFFAEILTDRGDFDTA------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR  430 (537)
T ss_dssp             TTCTH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred             CCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence            98843      344445455555555555                  8899999999998887754      55688888


Q ss_pred             c----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-H-----HHHHH
Q 004984          617 L----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-F-----LKAYA  680 (721)
Q Consensus       617 l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~-~-----~~~~~  680 (721)
                      +          |++++|+..++++++++|++++++.++|++++.+|++++|+..|++++++.|+.... -     ..+.+
T Consensus       431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  510 (537)
T 3fp2_A          431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI  510 (537)
T ss_dssp             HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred             HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHH
Confidence            8          999999999999999999999999999999999999999999999999999997722 1     11222


Q ss_pred             hhccCCCCCchhhHHHHHH
Q 004984          681 LADSSQDSSCSSTVVSLLE  699 (721)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~  699 (721)
                      ......||+-+..+.+++.
T Consensus       511 ~~~~~~~~~~~~~~~~~~~  529 (537)
T 3fp2_A          511 QKRLRADPIISAKMELTLA  529 (537)
T ss_dssp             HHHHHTC------------
T ss_pred             HHhccccHHHHHHHhhHHH
Confidence            2233456777776665554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=3.5e-26  Score=251.31  Aligned_cols=245  Identities=10%  Similarity=0.015  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCC-HHHHHHHHHHHHhcCCCcHHHHHHHhh-
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGH-KLWAYEKLNSVISSVTPLGWMYQERSL-  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~-~~~A~~~~~~aI~~~~~~~~ay~~rg~-  457 (721)
                      ...+++++|.++...|++++|+..|++||+++  +..+++++|.++..+|+ +++|+..|+++|+++|++..+|.++|. 
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            36778999999999999999999999999995  45678999999999997 999999999999999999999999985 


Q ss_pred             ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH-
Q 004984          458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA-LEDYQAA-  531 (721)
Q Consensus       458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~-lgd~eeA-  531 (721)
                         .++.++|+.+|++||+++|+++.+|++||.++..+|++++|+..|+++|+++|+ +.+|++||.++.. .|.+++| 
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence               367799999999999999999999999999999999999999999999999996 8999999999999 5555888 


Q ss_pred             ----HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          532 ----LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       532 ----l~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                          +..|++|++++|++..      +...++.+.....  ++++                  ++..+.++ +.+|.++.
T Consensus       256 ~~~el~~~~~Al~l~P~~~~------a~~~l~~ll~~~g~~~~~~------------------a~~~~~~~-~~~p~~~~  310 (382)
T 2h6f_A          256 LEREVQYTLEMIKLVPHNES------AWNYLKGILQDRGLSKYPN------------------LLNQLLDL-QPSHSSPY  310 (382)
T ss_dssp             HHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTTCGGGCHH------------------HHHHHHHH-TTTCCCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHccCccchHH------------------HHHHHHHh-ccCCCCHH
Confidence                5999999999999943      3333322222211  2233                  46677776 99999999


Q ss_pred             HHHHHHHHHHHcC---------ChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHhc
Q 004984          606 LYFRQSLLLLRLN---------CPEAAMRSLQLA-RQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       606 ~~~~~g~~L~~lg---------~~eeAl~~~~~A-l~l~P~~~ea~~~~G~~Ly~~  651 (721)
                      ++..+|.++.++|         ..++|+..|+++ ++++|.....+.++|..+..+
T Consensus       311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            9999999999985         358999999999 999999999999999988765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=4.7e-26  Score=236.25  Aligned_cols=263  Identities=10%  Similarity=-0.037  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      ...++.+|..+...|++++|+..|+++++..  ...++..+|.++...|++++|+..+.++++..|+.+.++...|.   
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999884  45577889999999999999999999999999998888888765   


Q ss_pred             -cCChhHHHHHHHHHHhcCCCChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 004984          458 -YCEGDKRWEDLDKATALDPTLSYPYMYR--------------AS-SLMTKQNVEAALAEINRILGFKLA-LECLELRFC  520 (721)
Q Consensus       458 -~~~~~eAl~d~~kAieLdP~~~~ay~~r--------------g~-~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~  520 (721)
                       .++.++|+..|+++++++|++...+..+              |. ++...|++++|+..++++++.+|+ +..+..+|.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence             3677999999999999999999999988              77 799999999999999999999996 788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 004984          521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD  600 (721)
Q Consensus       521 ~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~  600 (721)
                      ++..+|++++|+..|+++++++|++..      +...++.+.....++++|                  +..++++++.+
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~  236 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQ------LWNKLGATLANGNRPQEA------------------LDAYNRALDIN  236 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcC
Confidence            999999999999999999999999843      444444445555566666                  88999999999


Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      |.++.+++++|.++..+|++++|+..++++++++|+            +..++.++|.++..+|++++|...+++++++-
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF  316 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999            89999999999999999999999999988865


Q ss_pred             C
Q 004984          669 R  669 (721)
Q Consensus       669 ~  669 (721)
                      |
T Consensus       317 ~  317 (327)
T 3cv0_A          317 A  317 (327)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.1e-25  Score=244.55  Aligned_cols=266  Identities=11%  Similarity=-0.043  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---------c--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC------
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------H--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV------  445 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~------  445 (721)
                      +..++++|.++..+|++++|++.|++|+++.         +  ..++.++|.+|..+|++++|+..+++++++.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            4567789999999999999999999999861         1  2346789999999999999999999999863      


Q ss_pred             --CCcHHHHHHHhh----c--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCC-HH
Q 004984          446 --TPLGWMYQERSL----Y--CEGDKRWEDLDKATALDPTLSYPYMYRASSLM---TKQNVEAALAEINRILGFKLA-LE  513 (721)
Q Consensus       446 --~~~~~ay~~rg~----~--~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~---~lg~~~eAl~~~~kAL~l~P~-~~  513 (721)
                        +..+.++.+.|.    .  +.+++|+..|++|++++|+++.++.++|.++.   ..+++++|+..|++||+++|+ +.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence              345666666652    1  23499999999999999999999999999855   467889999999999999996 67


Q ss_pred             HHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984          514 CLELRFCFFL----ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS  589 (721)
Q Consensus       514 ~~~~R~~~~~----~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a  589 (721)
                      .+.++|..+.    ..|++++|+..|+++++++|++..      +...++.+.....++++|                  
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A------------------  266 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD------VLRSAAKFYRRKDEPDKA------------------  266 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH------HHHHHHHHHHHTTCHHHH------------------
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHHcCchHHH------------------
Confidence            7777775544    457889999999999999999843      445555555556666666                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLR-------------------LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD  650 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~-------------------lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~  650 (721)
                      +..+.++++.+|.++.+++++|.++..                   .+.+++|+..+++|++++|+++.++.++|.++..
T Consensus       267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~  346 (472)
T 4g1t_A          267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL  346 (472)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence            889999999999999999999998754                   3457889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCHH
Q 004984          651 TSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       651 ~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|++++|+..|++|++++|+..
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHH
T ss_pred             hccHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999998875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.94  E-value=8e-25  Score=248.21  Aligned_cols=289  Identities=8%  Similarity=-0.037  Sum_probs=249.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG  461 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~  461 (721)
                      ..++..+...|++++|+..|+++++. +...++..+|.++...|++++|++.|+++++..|+...++...+.    .++.
T Consensus       276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  355 (597)
T 2xpi_A          276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK  355 (597)
T ss_dssp             HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence            33466777889999999999999886 456678889999999999999999999999998876555544432    2555


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+ ...+..++.++...|++++|+..|+++++
T Consensus       356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999996 78888999999999999999999999999


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~  620 (721)
                      ++|++..      +...++.+.....++++|                  +..++++++++|.++.+|+.+|.++.+.|++
T Consensus       436 ~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  491 (597)
T 2xpi_A          436 LFQGTHL------PYLFLGMQHMQLGNILLA------------------NEYLQSSYALFQYDPLLLNELGVVAFNKSDM  491 (597)
T ss_dssp             TTTTCSH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             hCccchH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            9998743      333344444445555555                  8899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchh
Q 004984          621 EAAMRSLQLARQH------AASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSS  692 (721)
Q Consensus       621 eeAl~~~~~Al~l------~P~~-~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~  692 (721)
                      ++|+..|++++++      +|++ ..++.++|+++...|++++|+..|++++++.|+.. +|+..|.++...+    --.
T Consensus       492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~  567 (597)
T 2xpi_A          492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK----IPG  567 (597)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT----CHH
T ss_pred             HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CHH
Confidence            9999999999999      6765 78999999999999999999999999999999665 9999999998765    244


Q ss_pred             hHHHHHHHhhc
Q 004984          693 TVVSLLEDALK  703 (721)
Q Consensus       693 ~~~~~~~~~~~  703 (721)
                      ..+..++.+++
T Consensus       568 ~A~~~~~~~l~  578 (597)
T 2xpi_A          568 LAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            56677777765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=6.5e-25  Score=227.98  Aligned_cols=275  Identities=12%  Similarity=-0.042  Sum_probs=234.4

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhC-CHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKG-HKLWAYEK  437 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G-~~~~A~~~  437 (721)
                      +.+....+++++++..+..   ..+++.++.++...|++++|+..|+++++.+  ...++..+|.++...| ++++|+..
T Consensus        37 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  113 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY  113 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            5667777888866554432   3456678888999999999999999999985  4567888999999999 99999999


Q ss_pred             HHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984          438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L  512 (721)
Q Consensus       438 ~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~  512 (721)
                      |.++++..|+.+.+|..+|..    ++.++|+..|++|++++|++..++..+|.++..+|++++|+..|+++++++|+ +
T Consensus       114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence            999999999988888887653    67799999999999999999999999999999999999999999999999996 7


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh---hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF---EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS  589 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~---~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a  589 (721)
                      ..+..+|.++..+|++++|+..|++++++.|.....   .....+...++.+.....++++|                  
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------  255 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------------------  255 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------------------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------------------
Confidence            888899999999999999999999999997543111   01133455555555555666666                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCCHHH
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSHCEE  656 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~L-y~~G~~de  656 (721)
                      +..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.++..+|+++ ..+|+.+.
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a  323 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA  323 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence            88999999999999999999999999999999999999999999999999999999999 67777653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=3.2e-25  Score=222.59  Aligned_cols=179  Identities=17%  Similarity=0.105  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-----------CCHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL-----------EDYQ  529 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-----------gd~e  529 (721)
                      ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+           |+++
T Consensus        22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~  101 (217)
T 2pl2_A           22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE  101 (217)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence            44444455555555555555555555555555555555555555555553 44555555555555           5555


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984          530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR  609 (721)
Q Consensus       530 eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~  609 (721)
                      +|+..|+++++++|++.      .+...++.+.....++++|                  +..++++++++ .++.++++
T Consensus       102 ~A~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~-~~~~~~~~  156 (217)
T 2pl2_A          102 QALSVLKDAERVNPRYA------PLHLQRGLVYALLGERDKA------------------EASLKQALALE-DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC-CCHHHHHH
T ss_pred             HHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChHHH------------------HHHHHHHHhcc-cchHHHHH
Confidence            55555555555555552      2233333333333333333                  55556666666 66778889


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      +|.++..+|++++|+..|++|++++|++++++.++|.++..+|++++|+..|+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999875

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.93  E-value=3.8e-26  Score=222.35  Aligned_cols=143  Identities=21%  Similarity=0.305  Sum_probs=132.2

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.|++  +++++|+.+|+|+|||+++ ++.++
T Consensus        28 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~l~~~Yt~~~~-~~~~~  104 (172)
T 3htm_A           28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM  104 (172)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECS--SCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred             HHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecC--CCHHHHHHHHHHHhCCCCC-CcHHH
Confidence            44678899999999999999999999999999999999999999999999994  9999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCCh
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND  321 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~  321 (721)
                      +.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..++++.|...|.+++.+|+...+..
T Consensus       105 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s  170 (172)
T 3htm_A          105 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLET  170 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999985 7999999999999999999999999999999876543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=2.8e-24  Score=222.87  Aligned_cols=247  Identities=15%  Similarity=0.040  Sum_probs=217.2

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLM  490 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~  490 (721)
                      ...++.+|..+...|++++|+..++++++.+|+.+.++..+|.    .++.++|+..|+++++++|+++.+|..+|.++.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999888888874    367799999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          491 TKQNVEAALAEINRILGFKLA-LECLELR--------------FC-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       491 ~lg~~~eAl~~~~kAL~l~P~-~~~~~~R--------------~~-~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      ..|++++|+..|+++++.+|+ ...+..+              +. ++...|++++|+..|+++++++|++.      .+
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~  174 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA------QL  174 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH------HH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH------HH
Confidence            999999999999999999996 4444444              44 68899999999999999999999973      34


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984          555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA  634 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~  634 (721)
                      ...++.+.....++++|                  +..++++++.+|.++.+++++|.++..+|++++|+..++++++++
T Consensus       175 ~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSA------------------AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            44444445555556655                  889999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------HH-HHHHHHHHhhccC
Q 004984          635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------------FE-AFFLKAYALADSS  685 (721)
Q Consensus       635 P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~------------~~-a~~~~~~~~~~~~  685 (721)
                      |++.++++++|.+++.+|++++|+..|++++++.|+            .. +|+..|.++...+
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999            55 9999999887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-24  Score=214.98  Aligned_cols=234  Identities=13%  Similarity=0.091  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      .+.+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..+.++++                 
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----------------   66 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE-----------------   66 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------
Confidence            46677888888888888888888888888774 445667777777777777766666555544                 


Q ss_pred             hhHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~-------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~  533 (721)
                                   ++|++       +.+|.++|.++..+|++++|+..|++++.++|+..       ++..+|++++|+.
T Consensus        67 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~  126 (258)
T 3uq3_A           67 -------------QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELK  126 (258)
T ss_dssp             -------------HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHH
T ss_pred             -------------hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHH
Confidence                         44444       67788888888888888888888888888888743       4566777888888


Q ss_pred             HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL  613 (721)
Q Consensus       534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~  613 (721)
                      .+++++..+|++.      .+...++.+.....++++|                  +..++++++.+|.++.+++++|.+
T Consensus       127 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~  182 (258)
T 3uq3_A          127 KAEAEAYVNPEKA------EEARLEGKEYFTKSDWPNA------------------VKAYTEMIKRAPEDARGYSNRAAA  182 (258)
T ss_dssp             HHHHHHHCCHHHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcchH------HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHH
Confidence            8888888888763      3444444444455555555                  778888888888889999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCHH-HHHH
Q 004984          614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK------RSFE-AFFL  676 (721)
Q Consensus       614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~------~~~~-a~~~  676 (721)
                      +..+|++++|+..++++++++|++++++.++|.++..+|++++|+..|++++++.      |+.. ++..
T Consensus       183 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999      6655 4433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=8.5e-24  Score=212.19  Aligned_cols=185  Identities=17%  Similarity=0.042  Sum_probs=166.7

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |+++.+|+++|.++...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+..|+++++++|++..      +
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------a   75 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------G   75 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------H
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------H
Confidence            889999999999999999999999999999999996 888999999999999999999999999999999954      3


Q ss_pred             HHHHHHHHHhh-----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984          555 SQLHMLVREHI-----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       555 ~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA  623 (721)
                      ...++.+....           .++++|                  +..++++++++|+++.+|+++|.++..+|++++|
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence            44444444444           555555                  8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984          624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~  685 (721)
                      +..|++|++++ +++++++++|.++..+|++++|+..|+++++++|++. ++++.|.++...+
T Consensus       138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG  199 (217)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            99999999999 9999999999999999999999999999999999988 9999999987764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=4.1e-24  Score=217.33  Aligned_cols=231  Identities=12%  Similarity=-0.011  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCc-HHHHHHHhh-
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPL-GWMYQERSL-  457 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~--~~~-~~ay~~rg~-  457 (721)
                      ..++.+|..+...|++++|+..|+++++.+  ...++..+|.++...|++++|+..+.++++..  +.. +.+|..+|. 
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            346778888888899999999999988884  34467788888888888888888877777721  111 222333332 


Q ss_pred             ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004984          458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       458 ---~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~  533 (721)
                         .++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|......+++++|+.
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence               133355555555555555555555555555555555555555555555555553 4444445522222235555555


Q ss_pred             HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL  613 (721)
Q Consensus       534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~  613 (721)
                      .|+++                                                          ++++|.++.+++++|.+
T Consensus       164 ~~~~a----------------------------------------------------------~~~~p~~~~~~~~~~~~  185 (272)
T 3u4t_A          164 SFVKV----------------------------------------------------------LELKPNIYIGYLWRARA  185 (272)
T ss_dssp             HHHHH----------------------------------------------------------HHHSTTCHHHHHHHHHH
T ss_pred             HHHHH----------------------------------------------------------HHhCccchHHHHHHHHH
Confidence            55444                                                          55555555556666666


Q ss_pred             HHHcCC---hHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          614 LLRLNC---PEAAMRSLQLARQHA---ASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       614 L~~lg~---~eeAl~~~~~Al~l~---P~~-----~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +..+|+   +++|+..|++|+++.   |+.     .+++.++|.++..+|++++|+..|+++++++|+.+
T Consensus       186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  255 (272)
T 3u4t_A          186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK  255 (272)
T ss_dssp             HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence            666666   666666666666665   432     25666666666666666666666666666666665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.92  E-value=1.8e-23  Score=220.32  Aligned_cols=249  Identities=17%  Similarity=0.131  Sum_probs=208.5

Q ss_pred             HHhccchHHHHHHHHHHHhccch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHH
Q 004984          393 RLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW  465 (721)
Q Consensus       393 ~~~~g~y~eA~~~f~~AL~~~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl  465 (721)
                      .+..|+|.+|+..+++.....|.   .+...++++|..+|+++.|+..++..   .|+...++...+.+    ++.++|+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence            45679999999999987766544   35577899999999999999988652   55555565555432    4569999


Q ss_pred             HHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          466 EDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       466 ~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      ..|+++++.  +|+++.+++.+|.++...|++++|+..+++     | +++.+..++.++..+|++++|+..|+++++++
T Consensus        86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            999999876  699999999999999999999999999999     6 48888899999999999999999999999999


Q ss_pred             CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984          543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE  621 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e  621 (721)
                      |++....  .                  +.+|..++..   .+++. |+..++++++.+|.++.+|+++|.++.++|+++
T Consensus       161 p~~~~~~--l------------------~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  217 (291)
T 3mkr_A          161 EDATLTQ--L------------------ATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE  217 (291)
T ss_dssp             TTCHHHH--H------------------HHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCcHHHH--H------------------HHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence            9973210  0                  1122222211   12222 488999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCHH
Q 004984          622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSFE  672 (721)
Q Consensus       622 eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~i~~~~~  672 (721)
                      +|+..+++|++++|+++++++++|.++..+|+.+++ ...++++++++|+..
T Consensus       218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999875 578899999999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=2.2e-23  Score=211.94  Aligned_cols=238  Identities=9%  Similarity=-0.068  Sum_probs=196.5

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--c---hhhHhhHHHHHHHhCCHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--H---IYSIAGLARLGYIKGHKLWAY  435 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~---~~A~~~lg~~~~~~G~~~~A~  435 (721)
                      +.+.+...++++++..+..   ..+++.+|.++...|++++|+..|+++++..  +   ..++..+|.++..+|++++|+
T Consensus        18 ~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            4567778888877655432   4478899999999999999999999999952  1   224788999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          436 EKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA-SSLMTKQNVEAALAEINRILGFKL  510 (721)
Q Consensus       436 ~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg-~~l~~lg~~~eAl~~~~kAL~l~P  510 (721)
                      ..|.++++.+|+.+.++..+|.    .++.++|+..|++|++++|+++.+|.++| .++. .+++++|+..|+++++++|
T Consensus        95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p  173 (272)
T 3u4t_A           95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP  173 (272)
T ss_dssp             HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence            9999999999999888888875    36779999999999999999999999999 5555 5599999999999999999


Q ss_pred             C-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 004984          511 A-LECLELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD  586 (721)
Q Consensus       511 ~-~~~~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd  586 (721)
                      + +..+..+|.++..+|+   +++|+..|++++++......    .                .                 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~----------------~-----------------  216 (272)
T 3u4t_A          174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----K----------------Y-----------------  216 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG----G----------------G-----------------
T ss_pred             cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc----c----------------c-----------------
Confidence            7 7888889999999999   89999999999988644310    0                0                 


Q ss_pred             cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                                   .+....+++++|.++..+|++++|+..+++|++++|+++.+.-.+|++.-..|
T Consensus       217 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          217 -------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             -------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence                         00113568889999999999999999999999999999999999988875544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=8.7e-24  Score=228.34  Aligned_cols=291  Identities=12%  Similarity=-0.026  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCc
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPL  448 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~  448 (721)
                      .....++.+|..+...|++++|+..|++|+++++.      .++..+|.++..+|++++|+..+.++++.      .+..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            44667789999999999999999999999998543      46888999999999999999999999987      4556


Q ss_pred             HHHHHHHhh----cCChhHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 004984          449 GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPYMYRASSLMTKQN-----------------VEAALAE  501 (721)
Q Consensus       449 ~~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~ay~~rg~~l~~lg~-----------------~~eAl~~  501 (721)
                      +.++..+|.    .++.++|+..|++|+++      .|..+.+|.++|.++..+|+                 +++|+..
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            666666654    25669999999999999      78888999999999999999                 9999999


Q ss_pred             HHHHHhcCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 004984          502 INRILGFKL---A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW  574 (721)
Q Consensus       502 ~~kAL~l~P---~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~  574 (721)
                      |++++++.+   +    ...+.++|.++..+|++++|+..|++++++.|++........+...++.+.....++++|   
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---  282 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA---  282 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH---
Confidence            999998742   1    345677899999999999999999999999887543333344555555555555555555   


Q ss_pred             HhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 004984          575 LQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV  642 (721)
Q Consensus       575 ~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~  642 (721)
                                     +..+++++++.|..      +.++.++|.++..+|++++|+..+++|+++.++.      +.++.
T Consensus       283 ---------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  347 (411)
T 4a1s_A          283 ---------------AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW  347 (411)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence                           78899999998865      7889999999999999999999999999997765      45999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 004984          643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS  689 (721)
Q Consensus       643 ~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~  689 (721)
                      ++|.++..+|++++|+..|++|+++.+....-...+-..-+++.+.+
T Consensus       348 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  394 (411)
T 4a1s_A          348 SLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXXXXXXXXXXX  394 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            99999999999999999999999999998866666666665544433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=206.33  Aligned_cols=232  Identities=13%  Similarity=0.110  Sum_probs=203.7

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc---------hhhHh
Q 004984          349 CLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---------IYSIA  419 (721)
Q Consensus       349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---------~~A~~  419 (721)
                      ..+..+.... .+.+.+...+++++...    ....+++.+|.++...|++++|+..|++++++.+         ..++.
T Consensus         9 ~~~g~~~~~~-~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            9 KAEGNKFYKA-RQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHh-ccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3344444443 35667778888877664    3467889999999999999999999999999854         46788


Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL  499 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl  499 (721)
                      .+|.++...|++++|+..+.++++..|+ +..+...|.+   ++|+..|+++++++|+++.+|.++|.++...|++++|+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  159 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV  159 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999876 8889999888   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      ..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++                                 
T Consensus       160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------  206 (258)
T 3uq3_A          160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------------------------  206 (258)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---------------------------------
Confidence            999999999996 7888899999999999999999888888877775                                 


Q ss_pred             hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChhHHHHHHHH
Q 004984          579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWI  647 (721)
Q Consensus       579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~------P~~~ea~~~~G~~  647 (721)
                                               +.+|+++|.++..+|++++|+..+++|++++      |++.+++..++.+
T Consensus       207 -------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          207 -------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence                                     3557889999999999999999999999999      9998888777654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=2.3e-23  Score=200.85  Aligned_cols=174  Identities=11%  Similarity=0.084  Sum_probs=145.4

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      +.+..|+++|.++..+|++++|+..|++||+++|+ +..+..+|.++..+|++++|+..+++++..+|++..      +.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~   76 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------AY   76 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------HH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------HH
Confidence            45677888888888888888888888888888885 777777888888888888888888888888888732      33


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                      ...+.+.....+++.|                  ...+.+++.++|.++.+++.+|.++.++|++++|+..|+++++++|
T Consensus        77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p  138 (184)
T 3vtx_A           77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP  138 (184)
T ss_dssp             HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence            4444444444555555                  6678888888888899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984          636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF  674 (721)
Q Consensus       636 ~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~  674 (721)
                      +++++++++|.++..+|++++|+..|++|++++|+.+-|
T Consensus       139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~  177 (184)
T 3vtx_A          139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY  177 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence            999999999999999999999999999999999987544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=9.5e-24  Score=225.68  Aligned_cols=285  Identities=12%  Similarity=-0.040  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW  450 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~  450 (721)
                      ..++..+|..+...|++++|+..|++|++.++.      .++..+|.++...|++++|+..+.+++..      .|..+.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            456788999999999999999999999998543      46788999999999999999999999887      334456


Q ss_pred             HHHHHhh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004984          451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQN--------------------VEAALA  500 (721)
Q Consensus       451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~------~~ay~~rg~~l~~lg~--------------------~~eAl~  500 (721)
                      ++..+|.    .++.++|+..|++|+++.|+.      +.++.++|.++..+|+                    +++|+.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            6666654    256699999999999998876      4599999999999999                    999999


Q ss_pred             HHHHHHhcC------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984          501 EINRILGFK------LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC  573 (721)
Q Consensus       501 ~~~kAL~l~------P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~  573 (721)
                      .|++++++.      |. ...+.++|.++..+|++++|+..|++++++.|+.........+...++.+.....++++|  
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--  246 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA--  246 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH--
Confidence            999999872      22 345677899999999999999999999999887643333344555555555555555555  


Q ss_pred             HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 004984          574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL  641 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~  641 (721)
                                      +..+++++++.|..      +.+++++|.++..+|++++|+..+++|+++.+..      +.++
T Consensus       247 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  310 (406)
T 3sf4_A          247 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC  310 (406)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                            78899999998877      8899999999999999999999999999997766      6799


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHHHHHHhhccC
Q 004984          642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFLKAYALADSS  685 (721)
Q Consensus       642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------~-a~~~~~~~~~~~~  685 (721)
                      .++|.++..+|++++|+..|++|+++.+..      . +++..|.++...+
T Consensus       311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence            999999999999999999999999984332      2 7777777765444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.91  E-value=3.3e-23  Score=213.64  Aligned_cols=271  Identities=12%  Similarity=-0.023  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW  450 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~  450 (721)
                      ...++..|..+...|++++|+..|++|++.++.      .++..+|.++...|++++|+..+.++++.      .+..+.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            456678899999999999999999999998443      46778999999999999999999999887      334455


Q ss_pred             HHHHHhh----cCChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCC--------------------HHHHHH
Q 004984          451 MYQERSL----YCEGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQN--------------------VEAALA  500 (721)
Q Consensus       451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~------ay~~rg~~l~~lg~--------------------~~eAl~  500 (721)
                      ++..+|.    .++.++|+..|++|+++.|+...      +|.++|.++..+|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            5655553    25669999999999999887644      99999999999999                    999999


Q ss_pred             HHHHHHhcCC------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984          501 EINRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC  573 (721)
Q Consensus       501 ~~~kAL~l~P------~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~  573 (721)
                      .+++++.+.+      . ...+..+|.++..+|++++|+..|++++++.|..........+....+.+.....++++|  
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--  242 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA--  242 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH--
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--
Confidence            9999998732      2 345677899999999999999999999999876533223333555555555555555555  


Q ss_pred             HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 004984          574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL  641 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~  641 (721)
                                      +..+++++++.|..      +.+++++|.++..+|++++|+..+++|+++.|..      ..++
T Consensus       243 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  306 (338)
T 3ro2_A          243 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC  306 (338)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                            77889999988877      7899999999999999999999999999998776      4499


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       642 ~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                      .++|.++..+|++++|+..|++|+++.++.
T Consensus       307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          307 WSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998764

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.90  E-value=3.6e-24  Score=228.49  Aligned_cols=142  Identities=21%  Similarity=0.307  Sum_probs=126.8

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +.+++.+|||+|.|+|++|+|||.|||++||||++||.++|.|+...+|+|++  +++++|+.+|+|+|||+++ ++.++
T Consensus       168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt~~~~-~~~~~  244 (312)
T 3hqi_A          168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM  244 (312)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHHSCCT-THHHH
T ss_pred             HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcCCCCC-ChHHH
Confidence            34678899999999999999999999999999999999999999999999995  9999999999999999999 88999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhcccCCC
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN  320 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~  320 (721)
                      +.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|+++.|.+.|++++..|+...+.
T Consensus       245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~  309 (312)
T 3hqi_A          245 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLE  309 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999985 799999999999999999999999999999876544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=3.5e-23  Score=210.00  Aligned_cols=245  Identities=12%  Similarity=0.011  Sum_probs=194.6

Q ss_pred             HHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----c
Q 004984          389 LGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----Y  458 (721)
Q Consensus       389 lG~~~~~~g~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~  458 (721)
                      ++......|++++|+..|+++++.      +...++..+|.++...|++++|+..|.++++.+|+.+.+|..+|.    .
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            344455678999999999999986      245578889999999999999999999999999998888888875    3


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+.........+....|++++|+..|+++
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            67799999999999999999999999999999999999999999999999997443333334457779999999999999


Q ss_pred             HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 004984          539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLL  614 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~----~~~~~~~g~~L  614 (721)
                      +...|++........       +.....                  +..+|+..+.+++..+|..    +.+++++|.++
T Consensus       171 ~~~~~~~~~~~~~~~-------~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~  225 (275)
T 1xnf_A          171 FEKSDKEQWGWNIVE-------FYLGNI------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYY  225 (275)
T ss_dssp             HHHSCCCSTHHHHHH-------HHTTSS------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHH-------HHHHhc------------------CHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence            999998743221111       011111                  1122467778877777743    78999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                      .++|++++|+..+++|++++|++...   .|.++..+|++++|++.|
T Consensus       226 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          226 LSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999987654   488999999999999887

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.90  E-value=1.1e-24  Score=206.00  Aligned_cols=126  Identities=22%  Similarity=0.323  Sum_probs=96.2

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +.+++.+|||+|+++|++|+|||.||+++|+||++||.++|.|+...+|++++  +++++|+.+++|+|||+++ ++.++
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~~~~~l~~~Y~~~~~-~~~~~   95 (145)
T 4eoz_A           19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM   95 (145)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECS--SCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred             HHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecC--CCHHHHHHHHHhhccCccC-CcHHH
Confidence            44678899999999999999999999999999999999999999999999994  9999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHHHHhcccCChhHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA  304 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~~~A~~~~~~~L~  304 (721)
                      +.+++.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|+++.|.
T Consensus        96 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk  144 (145)
T 4eoz_A           96 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLK  144 (145)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhc
Confidence            99999999999999999999999999995 79999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=2.7e-22  Score=225.66  Aligned_cols=212  Identities=13%  Similarity=-0.025  Sum_probs=187.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCCh-hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          429 GHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG-DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN  503 (721)
Q Consensus       429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~-~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~  503 (721)
                      +..++|+..+.+.....|+.+.+++.+|.    .+++ ++|+..|++|++++|+++.+|+++|.+|..+|++++|+..|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44566666777777777778888888875    3677 899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------h
Q 004984          504 RILGFKLALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI--------D  566 (721)
Q Consensus       504 kAL~l~P~~~~~~~R~~~~~~l---------gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~--------~  566 (721)
                      +|++++|++..+.++|.++..+         |++++|+..|+++++++|++..      +...++.+....        .
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHhhccccc
Confidence            9999999988888899999999         9999999999999999999843      444444444444        5


Q ss_pred             hhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY  643 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~  643 (721)
                      ++++|                  +..++++++++|   .++.+|+++|.++..+|++++|+..|++|++++|++++++.+
T Consensus       236 ~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~  297 (474)
T 4abn_A          236 ISQQA------------------LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR  297 (474)
T ss_dssp             HHHHH------------------HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHH------------------HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            55555                  889999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 004984          644 EGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       644 ~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      +|.++..+|++++|+..|++.
T Consensus       298 l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          298 EQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999888765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=4.3e-21  Score=196.97  Aligned_cols=232  Identities=13%  Similarity=0.055  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSLY  458 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~  458 (721)
                      ..+++.+|..+...|++++|+.+|++|++.++..+++.+|.++..    .|++++|+..|.++++..             
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------   72 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------------   72 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------------
Confidence            567889999999999999999999999999889999999999998    888877777766655542             


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQA  530 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~ee  530 (721)
                                         ++.+++++|.++..    .+++++|+..|++|++.+ ++..+.++|.++..    .|++++
T Consensus        73 -------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           73 -------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             -------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             -------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHH
Confidence                               44455555555555    555555555555555443 34445555555555    555555


Q ss_pred             HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984          531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL  606 (721)
Q Consensus       531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~  606 (721)
                      |+..|++++++++..        +...++.+...    ..++++|                  +..++++++.  +++.+
T Consensus       133 A~~~~~~a~~~~~~~--------a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~--~~~~a  184 (273)
T 1ouv_A          133 AVEYFTKACDLNDGD--------GCTILGSLYDAGRGTPKDLKKA------------------LASYDKACDL--KDSPG  184 (273)
T ss_dssp             HHHHHHHHHHTTCHH--------HHHHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHhcCcHH--------HHHHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHHH
Confidence            555555555554221        11111211111    2222222                  4455555554  34677


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          607 YFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK  677 (721)
Q Consensus       607 ~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~  677 (721)
                      ++++|.++..    .+++++|+..+++|++..|  +++++++|.++..    .|++++|+..|++|+++.|+...+.+.
T Consensus       185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~  261 (273)
T 1ouv_A          185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  261 (273)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8899999999    9999999999999999976  8999999999999    999999999999999999998866655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=8.3e-22  Score=196.09  Aligned_cols=206  Identities=16%  Similarity=0.108  Sum_probs=156.6

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      .|..+...|++   ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|
T Consensus        29 ~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  105 (243)
T 2q7f_A           29 QMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE  105 (243)
T ss_dssp             ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence            34444444444   77777777788888888888888888888888888888888888888775 666677778888888


Q ss_pred             CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984          527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL  606 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~  606 (721)
                      ++++|+..|+++++++|++..      +...++.+.....++++|                  +..++++++.+|.++.+
T Consensus       106 ~~~~A~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~  161 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDTEA  161 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCSHH------HHHHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccHHH
Confidence            888888888888888887632      333334344444444444                  67788888888888889


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA  680 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~  680 (721)
                      ++++|.++..+|++++|+..++++++.+|+++.++.++|.+++.+|++++|+..|++++++.|+.. +++..+..
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988 77776654

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.88  E-value=4.6e-23  Score=185.89  Aligned_cols=103  Identities=19%  Similarity=0.381  Sum_probs=92.3

Q ss_pred             cCCCCCccEEEEEcC----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCC
Q 004984          176 SGDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT  251 (721)
Q Consensus       176 ~~~~~~~DV~l~v~~----~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~  251 (721)
                      .+++.+|||+|+|+|    ++|+|||.||+++|+||++||.++|.|+. .+|+|++  +++++|+.+++|+|||+++ ++
T Consensus         3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~--~~~~~f~~~l~~iYt~~~~-~~   78 (109)
T 2vkp_A            3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD--VEPAAFLILLKYMYSDEID-LE   78 (109)
T ss_dssp             TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETT--SCHHHHHHHHHHHHHCCCC-CC
T ss_pred             ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCC--CCHHHHHHHHHHHcCCCcc-CC
Confidence            467889999999988    89999999999999999999999999998 9999994  9999999999999999999 99


Q ss_pred             HHHHHHHHHHhhhcChhhHHHHHHHHHHhhc
Q 004984          252 PNLLLEILIFANKFCCERLKDACDRKLASLV  282 (721)
Q Consensus       252 ~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l  282 (721)
                      .+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus        79 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           79 ADTVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999998754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=2.1e-22  Score=238.19  Aligned_cols=175  Identities=11%  Similarity=-0.020  Sum_probs=151.1

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV  552 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~  552 (721)
                      -.|+++++|+++|.++.++|++++|+..|++||+++|+ +.+++++|.++..+|++++|+..|++|++++|++.      
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~------   77 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA------   77 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Confidence            46888888888888888888888888888888888886 77788888888888888888888888888888883      


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                      .++..++.+.....++++|                  +..|++||+++|+++++|+++|.++..+|++++|+..|++|++
T Consensus        78 ~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           78 DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555566666666                  7788888889999999999999999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       633 l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ++|++++++.++|.++..+|++++|.+.|++++++.|+..
T Consensus       140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL  179 (723)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence            9999999999999999999999999999999999977643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=1.5e-21  Score=188.18  Aligned_cols=164  Identities=13%  Similarity=0.081  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL---  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~---  457 (721)
                      ...|+++|.++..+|+|++|+..|++||+++  +..++..+|.++..+|++++|+..+.+++...|+...++...|.   
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            4678899999999999999999999999995  56678899999999999999999999999999999999988875   


Q ss_pred             -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       458 -~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                       .++.++|+..+.+|++++|++..++..+|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence             366799999999999999999999999999999999999999999999999996 888999999999999999999999


Q ss_pred             HHHHhhCCCch
Q 004984          536 QAILTLSPDYR  546 (721)
Q Consensus       536 ~kal~L~P~~~  546 (721)
                      ++|++++|++.
T Consensus       165 ~~al~~~p~~a  175 (184)
T 3vtx_A          165 KKALEKEEKKA  175 (184)
T ss_dssp             HHHHHTTHHHH
T ss_pred             HHHHhCCccCH
Confidence            99999999974

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=3.1e-21  Score=216.94  Aligned_cols=197  Identities=11%  Similarity=0.073  Sum_probs=180.6

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV-EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~-~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      ++++..++++...+|+.+.+|+.+|.++..+|++ ++|+..|++|++++|+ ++.++.+|.++..+|++++|+..|++++
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999 9999999999999996 8889999999999999999999999999


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhh---------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ  610 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~  610 (721)
                      +++|+. .      +...++.+....         .++++|                  +..++++++++|.++.+|+++
T Consensus       165 ~~~p~~-~------~~~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l  219 (474)
T 4abn_A          165 THCKNK-V------SLQNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL  219 (474)
T ss_dssp             TTCCCH-H------HHHHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhCCCH-H------HHHHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence            999993 2      334444444444         555555                  889999999999999999999


Q ss_pred             HHHHHHc--------CChHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          611 SLLLLRL--------NCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       611 g~~L~~l--------g~~eeAl~~~~~Al~l~P---~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      |.++..+        |++++|+..|++|++++|   +++++++++|.+++.+|++++|+..|++|++++|++. +++..|
T Consensus       220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999        999999999999999999   9999999999999999999999999999999999998 899888


Q ss_pred             HHhhc
Q 004984          679 YALAD  683 (721)
Q Consensus       679 ~~~~~  683 (721)
                      .++..
T Consensus       300 ~~~~~  304 (474)
T 4abn_A          300 QLLEF  304 (474)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.1e-20  Score=199.10  Aligned_cols=231  Identities=10%  Similarity=-0.036  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHh-cCC
Q 004984          400 DEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA-LDP  476 (721)
Q Consensus       400 ~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAie-LdP  476 (721)
                      ++|+..|++||+.  ++..+|+.+|.++...|+.          +...   |.....++.+   ++|+..|++|++ ++|
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~---g~~~~~~~~~---~~A~~~~~rAl~~~~p   96 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEK---GDMNNAKLFS---DEAANIYERAISTLLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHT---SCCHHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhc---cchhhcccch---HHHHHHHHHHHHHhCc
Confidence            6788888888887  3455677777766543221          0000   0000111222   899999999999 799


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      ++..+|.++|.++..+|++++|+..|+++|+++|+ +. .|...+.++...|++++|+..|++|++++|.....+     
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-----  171 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY-----  171 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-----
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-----
Confidence            99999999999999999999999999999999996 65 788899999999999999999999999999873321     


Q ss_pred             HHHHHHHHH-hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984          555 SQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH  633 (721)
Q Consensus       555 ~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l  633 (721)
                       .....+.. ...++++                  |..+|+++|+.+|.++.+|.+.|..+.++|++++|+..|++|++.
T Consensus       172 -~~~a~~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          172 -VTAALMEYYCSKDKSV------------------AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             -HHHHHHHHHTSCCHHH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             11111111 1233333                  488999999999999999999999999999999999999999996


Q ss_pred             ---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          634 ---AAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       634 ---~P~-~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                         .|+ +...+...+..+...|++++|...+++++++.|+
T Consensus       233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence               564 7778888999999999999999999999999996

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.3e-20  Score=198.61  Aligned_cols=243  Identities=11%  Similarity=-0.004  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHhh----c
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQERSL----Y  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--~~~~~~ay~~rg~----~  458 (721)
                      +...++.++...|++++|+..++.. ......++..++..+...|++++|++.+.++++.  +|+++.+++.+|.    .
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~  114 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD  114 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence            4456788999999999999987662 2234446677888899999999999999999976  6988888888765    3


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH--HHHhcCCHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFC--FFLALEDYQAALCDV  535 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~-~~~~R~~--~~~~lgd~eeAl~d~  535 (721)
                      |+.++|+..|++     |+++.++..+|.++..+|++++|+..|+++++++|+.. .....++  ++...|++++|+..|
T Consensus       115 g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~  189 (291)
T 3mkr_A          115 QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF  189 (291)
T ss_dssp             TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            677999999998     99999999999999999999999999999999999743 2222333  445669999999999


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL  615 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~  615 (721)
                      +++++.+|++      ..+...++.+....+++++|                  ...++++|+++|.++++++++|.++.
T Consensus       190 ~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA------------------~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          190 QEMADKCSPT------LLLLNGQAACHMAQGRWEAA------------------EGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             HHHHHHSCCC------HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCc------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999998      34566666666677777777                  78999999999999999999999999


Q ss_pred             HcCChHH-HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          616 RLNCPEA-AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       616 ~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                      .+|++.+ |.+.++++++++|+++.+..    ..-+.+.||++...|
T Consensus       246 ~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          246 HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            9999976 57889999999999999876    466777888888777

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.87  E-value=1.1e-22  Score=186.84  Aligned_cols=101  Identities=20%  Similarity=0.255  Sum_probs=92.2

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +.+++.+|||+|+++|++|+|||.||+++|+||++||.++|.|+....|+|++  +++++|+.+++|+|||++. ++.++
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~ll~~~Yt~~~~-~~~~~   95 (120)
T 2if5_A           19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDF--VSAEALTALMDFAYTATLT-VSTAN   95 (120)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCS--SCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred             HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCC--CCHHHHHHHHHHHcCCCCc-cCHHH
Confidence            34678899999999999999999999999999999999999999999999994  9999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKL  278 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L  278 (721)
                      +.+++.+|++|+++.|++.|+++|
T Consensus        96 ~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           96 VGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh
Confidence            999999999999999999999997

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.87  E-value=4e-21  Score=191.16  Aligned_cols=217  Identities=16%  Similarity=0.070  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      ..+++.+|..+...|++++|+..|+++++..+  ..++..+|.++...|++++|+..                       
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~-----------------------   79 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAF-----------------------   79 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-----------------------
Confidence            56677888888888888888888888888743  44566677777776666655554                       


Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                             |+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++++
T Consensus        80 -------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           80 -------YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             -------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             -------HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                   55566666666777777777777777777777777777777774 5666667777777777777777777777


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      +++|++..      +...++.+.....++++|                  +..++++++.+|.++.+++++|.++..+|+
T Consensus       153 ~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          153 ELNENDTE------ARFQFGMCLANEGMLDEA------------------LSQFAAVTEQDPGHADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             HHCTTCHH------HHHHHHHHHHHHTCCHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhCCccHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence            77776632      223333333333333333                  667777777778888889999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                      +++|+..++++++++|++..++..++.+....|+
T Consensus       209 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~  242 (243)
T 2q7f_A          209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH  242 (243)
T ss_dssp             TTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999988766654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=5.4e-21  Score=193.82  Aligned_cols=221  Identities=14%  Similarity=0.034  Sum_probs=189.2

Q ss_pred             HHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          425 GYIKGHKLWAYEKLNSVISSV----TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       425 ~~~~G~~~~A~~~~~~aI~~~----~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      ....|++++|+..|.++++..    |+.+.++..+|.    .++.++|+..|++|++++|+++.+|.++|.++..+|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            445689999999999999974    456677777764    366699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 004984          497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL  575 (721)
Q Consensus       497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~  575 (721)
                      +|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++.....      ... +.....++++|    
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~~~~~A----  163 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL------WLY-LAEQKLDEKQA----  163 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------HHH-HHHHHHCHHHH----
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH------HHH-HHHHhcCHHHH----
Confidence            999999999999996 788899999999999999999999999999999853221      111 11222444444    


Q ss_pred             hhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhc
Q 004984          576 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDT  651 (721)
Q Consensus       576 ~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~Ly~~  651 (721)
                                    +..+.+++...|.+...+. .+..+...+..++|+..++++++.+|..    +++++++|.+++.+
T Consensus       164 --------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  228 (275)
T 1xnf_A          164 --------------KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL  228 (275)
T ss_dssp             --------------HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------------HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence                          7889999999999988765 7777788888999999999999998854    89999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCH
Q 004984          652 SHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       652 G~~deAl~~ye~Ai~i~~~~  671 (721)
                      |++++|+..|+++++++|+.
T Consensus       229 g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          229 GDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             TCHHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHhCCchh
Confidence            99999999999999999954

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.1e-21  Score=207.44  Aligned_cols=303  Identities=11%  Similarity=0.018  Sum_probs=228.6

Q ss_pred             HHHhhhcCCCCchhHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhH
Q 004984          351 LSEVAMNLDPRSDKTVCFLERLLESAETDR-QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGL  421 (721)
Q Consensus       351 l~wV~~d~~~rs~~~~~LLe~Lv~~a~~~l-q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~A~~~l  421 (721)
                      +..+.... .+.+....++++++...+... ....+++.+|.++...|++++|+..|++|+++.        ...++..+
T Consensus        15 ~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   93 (406)
T 3sf4_A           15 EGERLCKS-GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   93 (406)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHh-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            33343333 356678888888877544332 235678999999999999999999999998771        24467889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-------------cHHHHHHHhhcCC-----------------hhHHHHHHHHH
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVTP-------------LGWMYQERSLYCE-----------------GDKRWEDLDKA  471 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~~-------------~~~ay~~rg~~~~-----------------~~eAl~d~~kA  471 (721)
                      |.++...|++++|+..+.++++..+.             .|.+|...|++..                 .++|+..|++|
T Consensus        94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  173 (406)
T 3sf4_A           94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN  173 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999987543             3455555555000                 39999999999


Q ss_pred             Hhc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          472 TAL------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L------ECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       472 ieL------dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~------~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      +++      .|..+.+|.++|.++..+|++++|+..|++++++.|. .      ..+.++|.++..+|++++|+..|+++
T Consensus       174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            998      6666789999999999999999999999999998653 2      25677899999999999999999999


Q ss_pred             HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHH
Q 004984          539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSL  612 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~  612 (721)
                      +++.|+.........+...++.+.....++++|                  +..+++++++.|..      +.++.++|.
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~la~  315 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA------------------IDYHLKHLAIAQELNDRIGEGRACWSLGN  315 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            999887643333444555556555566666666                  77889999887665      678999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCHH
Q 004984          613 LLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEE-GLRKAEESIQMKRSFE  672 (721)
Q Consensus       613 ~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~Ly~~G~~de-Al~~ye~Ai~i~~~~~  672 (721)
                      ++..+|++++|+..+++|+++.+      ....++..+|.++..+|+..+ +....++...++.+.+
T Consensus       316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~  382 (406)
T 3sf4_A          316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN  382 (406)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999944      457899999999999998754 3334444444555443

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.87  E-value=2.8e-22  Score=186.04  Aligned_cols=102  Identities=22%  Similarity=0.403  Sum_probs=97.1

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEe-CCCCCCHHHHHHHhhhhccCCCCCCCHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPN  253 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l-~~~~is~~~~~~lL~f~Ytg~l~~i~~~  253 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.++|.| ....|+| +  ++++++|+.+|+|+|||++. ++.+
T Consensus        23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~   98 (127)
T 1r29_A           23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREG   98 (127)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred             HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHH
Confidence            4468889999999999999999999999999999999999999 7789999 6  59999999999999999999 9999


Q ss_pred             HHHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984          254 LLLEILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       254 ~v~~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      ++.+|+.+|++|+++.|++.|+++|.+
T Consensus        99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           99 NIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999975

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.86  E-value=6e-20  Score=184.61  Aligned_cols=188  Identities=14%  Similarity=0.029  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..++.++..+|++++|+..|+++++
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            55555555666666666666666666666666666666666666666663 55555566666666666666666666666


Q ss_pred             --hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984          541 --LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       541 --L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg  618 (721)
                        .+|++.      .+...++.+.....++++|                  +..++++++.+|.++.+++.+|.++..+|
T Consensus       134 ~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          134 DTLYPERS------RVFENLGLVSLQMKKPAQA------------------KEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             CTTCTTHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             CccCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence              444432      1222333333333334433                  55666666667777778889999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA  673 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a  673 (721)
                      ++++|+..++++++.+|++.+++..+|.++..+|++++|...+++++++.|+...
T Consensus       190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999999999999999999999999999998773

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.86  E-value=1.2e-18  Score=195.29  Aligned_cols=319  Identities=10%  Similarity=-0.074  Sum_probs=223.4

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW  433 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~  433 (721)
                      .+....+++++.+.     ....+++.+|..+..    .+++++|+.+|++|++.++..+++.+|.++..    .+++++
T Consensus        59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            44566666665443     235677888888888    78888888888888888888888888888887    788888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 004984          434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE  501 (721)
Q Consensus       434 A~~~~~~aI~~~~~~~~ay~~rg~--------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~  501 (721)
                      |+.+|.++++..  .+.++++.|.        -.+.++|+..|++|++.  +++.+++++|.+|..    .+++++|+..
T Consensus       134 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          134 SVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            888888887753  4455555543        23458888888888876  578888888888887    7888888888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHH--
Q 004984          502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIA--  571 (721)
Q Consensus       502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A--  571 (721)
                      |+++++.. ++...+.+|.++..    .+++++|+..|+++++..+...        ...++.+...    ..++++|  
T Consensus       210 ~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~lg~~y~~g~~~~~d~~~A~~  280 (490)
T 2xm6_A          210 YRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA--------QFRLGYILEQGLAGAKEPLKALE  280 (490)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHCCCCCCCCHHHHHH
Confidence            88888653 46666777777776    7888888888888887644321        1111111111    1222222  


Q ss_pred             -----------HHHHhhhhccccc-----cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 004984          572 -----------DCWLQLYDRWSSV-----DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLAR  631 (721)
Q Consensus       572 -----------~~~~~l~~~~~~~-----dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al  631 (721)
                                 +++..+.......     .+.. |+..++++++.  +++.+++++|.++...|   ++++|+..|++|+
T Consensus       281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~  358 (490)
T 2xm6_A          281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA  358 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence                       1222222222221     3444 78888888876  56788999999998877   7888999999998


Q ss_pred             HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       632 ~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      +.  +++++++++|++++.    .+++++|+..|++|++.. +..|+++.|..+....--+..-..-+..++.|+.
T Consensus       359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            87  678999999999998    899999999999998875 4568888898887632123333445556666653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.86  E-value=2.1e-20  Score=186.60  Aligned_cols=168  Identities=10%  Similarity=0.083  Sum_probs=116.0

Q ss_pred             ChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP-~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      ++++|+..|++|++++| .+..+++++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  101 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE  101 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            33666666666666666 66666666666666666666666666666666665 45555566666666666666666666


Q ss_pred             HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984          538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL  617 (721)
Q Consensus       538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l  617 (721)
                      +++++|++..+.      ..                                             -+.+|+++|.++..+
T Consensus       102 al~~~p~~~~~~------~~---------------------------------------------~~~~~~~~g~~~~~~  130 (228)
T 4i17_A          102 GIKAVPGNATIE------KL---------------------------------------------YAIYYLKEGQKFQQA  130 (228)
T ss_dssp             HHHHSTTCHHHH------HH---------------------------------------------HHHHHHHHHHHHHHT
T ss_pred             HHHHCCCcHHHH------HH---------------------------------------------HHHHHHHHhHHHHHh
Confidence            666666652100      00                                             014677888888888


Q ss_pred             CChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 004984          618 NCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHC---------------------------EEGLRKAEESIQMK  668 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~Ly~~G~~---------------------------deAl~~ye~Ai~i~  668 (721)
                      |++++|+..|++|++++|+  ++++++++|.+++.+|+.                           ++|+..|++|++++
T Consensus       131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888888888888888888  888888888888888887                           99999999999999


Q ss_pred             CCHH-HHHHHH
Q 004984          669 RSFE-AFFLKA  678 (721)
Q Consensus       669 ~~~~-a~~~~~  678 (721)
                      |+.. +..+.+
T Consensus       211 p~~~~~~~~l~  221 (228)
T 4i17_A          211 PNRTEIKQMQD  221 (228)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            9987 544443

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.86  E-value=2.2e-22  Score=189.78  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=98.0

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+  ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus        30 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~-~v~~~~~~~lL~~~Ytg~~~-i~~~~  105 (138)
T 2z8h_A           30 QRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPE-EVTVKGFEPLIQFAYTAKLI-LSKDN  105 (138)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCT-TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred             HHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCC-CCCHHHHHHHHHHhcCCCcc-cCHHH
Confidence            44678899999999999999999999999999999999999774  5788863 69999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                      +.+|+.+|++|+++.|++.|++||.+.++
T Consensus       106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~  134 (138)
T 2z8h_A          106 VDEVCRCVEFLSVHNIEESCFQFLKFKFL  134 (138)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999885

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=2.9e-18  Score=192.16  Aligned_cols=289  Identities=10%  Similarity=-0.051  Sum_probs=197.4

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 004984          362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW  433 (721)
Q Consensus       362 s~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~  433 (721)
                      .+....+++++...     ....+.+++|..+..    .+++++|+.+|++|++.++..++..+|.+|..    .+++++
T Consensus        95 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  169 (490)
T 2xm6_A           95 YAQAVIWYKKAALK-----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM  169 (490)
T ss_dssp             HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            34555666664432     134566677777776    67777777777777777777777777777776    677777


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 004984          434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE  501 (721)
Q Consensus       434 A~~~~~~aI~~~~~~~~ay~~rg~--------~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~  501 (721)
                      |+.+|.++++..  .+.++.+.|.        .++.++|+..|++|++.  +++.+++++|.+|..    .+++++|+..
T Consensus       170 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~  245 (490)
T 2xm6_A          170 AREWYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVL  245 (490)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            777777777653  4444444442        23447777777777764  456777777777776    6777777777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-----hhhhHHH
Q 004984          502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-----DNWTIAD  572 (721)
Q Consensus       502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~-----~~~~~A~  572 (721)
                      |+++++.. ++...+.+|.++..    .+|+++|+..|+++++.++..        +...++.+....     .++++|.
T Consensus       246 ~~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--------a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          246 FSQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--------GQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             HHHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCCCCcCCHHHHH
Confidence            77777542 35556667777766    777777777777777653322        111111111111     2222222


Q ss_pred             -------------HHHhhhhcccc---ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 004984          573 -------------CWLQLYDRWSS---VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLAR  631 (721)
Q Consensus       573 -------------~~~~l~~~~~~---~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al  631 (721)
                                   ++..++.....   ..+.. |+..++++++.  +++.+++++|.++..    .+++++|+..|++|+
T Consensus       317 ~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~  394 (490)
T 2xm6_A          317 SWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA  394 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence                         22222222211   11333 78899999987  789999999999999    999999999999999


Q ss_pred             HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHH
Q 004984          632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       632 ~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +..  ++++++++|++++.    .|++++|+..|++|+++.|+..
T Consensus       395 ~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  437 (490)
T 2xm6_A          395 EQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF  437 (490)
T ss_dssp             HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred             hCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence            864  79999999999999    9999999999999999998743

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.85  E-value=4.7e-22  Score=189.16  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=91.8

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCc--CCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP  252 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~E--s~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~  252 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.++|.|  +...+|.|+  ++++++|+.+|+|+|||++. ++.
T Consensus        41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~  117 (144)
T 2ppi_A           41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE  117 (144)
T ss_dssp             TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCT
T ss_pred             HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCH
Confidence            5678999999999999999999999999999999999999876  667889998  49999999999999999999 999


Q ss_pred             HHHHHHHHHhhhcChhhHHHHHHHHHH
Q 004984          253 NLLLEILIFANKFCCERLKDACDRKLA  279 (721)
Q Consensus       253 ~~v~~LL~aAd~~~v~~L~~~C~~~L~  279 (721)
                      +++.+|+.+|++|+++.|++.|++||.
T Consensus       118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~  144 (144)
T 2ppi_A          118 DTIQDVVQAADLLLLTDLKTLCCEFLE  144 (144)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence            999999999999999999999998863

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.85  E-value=9e-21  Score=204.68  Aligned_cols=267  Identities=12%  Similarity=-0.050  Sum_probs=219.9

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHhh----cCChhHHHHHHHHHHhc------CCCChH
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG----WMYQERSL----YCEGDKRWEDLDKATAL------DPTLSY  480 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~----~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~  480 (721)
                      ...+..+|..+...|++++|+..|+++++..|+..    .+|..+|.    .++.++|+..|++|+++      +|..+.
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            33456789999999999999999999999998864    56666664    26669999999999999      799999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALED-----------------YQAALCDVQ  536 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd-----------------~eeAl~d~~  536 (721)
                      +|.++|.++..+|++++|+..|++++++      .|. ...+.++|.++..+|+                 +++|+..|+
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999998      343 4567789999999999                 999999999


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQ  610 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~------~~~~~  610 (721)
                      +++++.+..........+...++.+.....++++|                  +..+++++++.|....      +++++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~l  269 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA------------------IEHHQERLRIAREFGDRAAERRANSNL  269 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            99987654322222334555555555555555555                  7889999999887766      99999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHH
Q 004984          611 SLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLK  677 (721)
Q Consensus       611 g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~-------~a~~~~  677 (721)
                      |.++..+|++++|+..+++|+++.|..      +.++.++|.++..+|++++|+..|++++++.+..       .+++..
T Consensus       270 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  349 (411)
T 4a1s_A          270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL  349 (411)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            999999999999999999999999966      7899999999999999999999999999986554       288888


Q ss_pred             HHHhhccCCCCCchhhHHHHHHHhhc
Q 004984          678 AYALADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      |.++...+    --..-+..+++|++
T Consensus       350 a~~~~~~g----~~~~A~~~~~~al~  371 (411)
T 4a1s_A          350 GNAHSAIG----GHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHTT----CHHHHHHHHHHHHH
T ss_pred             HHHHHHhc----cHHHHHHHHHHHHH
Confidence            88877654    23455677777765

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.85  E-value=4e-22  Score=183.23  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984          176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL  255 (721)
Q Consensus       176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v  255 (721)
                      .+++.+|||+|+++|++|+|||.|||++|+||++||.+++    +.+|+|+  ++++++|+.+++|+|||+++ ++.+++
T Consensus        19 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~v   91 (119)
T 3b84_A           19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNR   91 (119)
T ss_dssp             HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred             HhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence            4578899999999999999999999999999999999987    5789999  49999999999999999999 999999


Q ss_pred             HHHHHHhhhcChhhHHHHHHHHHHh
Q 004984          256 LEILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       256 ~~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      .+++.+|++|+++.|++.|++||.+
T Consensus        92 ~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           92 DQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.85  E-value=1.3e-19  Score=193.36  Aligned_cols=227  Identities=7%  Similarity=-0.100  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHhhc----C--ChhHHHHHHHHHHhcCCCChHHHHHHHHHH----Hhc---CCHHHH
Q 004984          432 LWAYEKLNSVISSVTPLGWMYQERSLY----C--EGDKRWEDLDKATALDPTLSYPYMYRASSL----MTK---QNVEAA  498 (721)
Q Consensus       432 ~~A~~~~~~aI~~~~~~~~ay~~rg~~----~--~~~eAl~d~~kAieLdP~~~~ay~~rg~~l----~~l---g~~~eA  498 (721)
                      ++|++.+.++|.++|++..+|..||.+    +  ..++++..++++|.++|++..+|++|+.++    ..+   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            467777777777777777777777642    4  668899999999999999999999999999    767   789999


Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh------hh
Q 004984          499 LAEINRILGFKLA-LECLELRFCFFLALEDYQ--AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN------WT  569 (721)
Q Consensus       499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e--eAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~------~~  569 (721)
                      ++.++++|+.+|. +.+|+.|++++..+|+++  +++..+++++++||.|..      +.+.++.+......      ++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s------AW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS------AWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccchhhhHH
Confidence            9999999999994 888999999999999988  999999999999998832      33333333222222      22


Q ss_pred             HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHhC---CCChhHHHHHH
Q 004984          570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA-AMRSLQLARQHA---ASDHERLVYEG  645 (721)
Q Consensus       570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~---P~~~ea~~~~G  645 (721)
                      +                  ++..++++|..+|++..+|++++.++.++|+..+ ....+.+++.++   |.+..|+..++
T Consensus       204 e------------------El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la  265 (306)
T 3dra_A          204 E------------------ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA  265 (306)
T ss_dssp             H------------------HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred             H------------------HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            2                  4889999999999999999999999999999666 445777788887   99999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhh
Q 004984          646 WILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALA  682 (721)
Q Consensus       646 ~~Ly~~G~~deAl~~ye~Ai~-i~~~~~-a~~~~~~~~~  682 (721)
                      -++.++|+.++|+..|+++++ ++|--. .|..|+-.|.
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~  304 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT  304 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred             HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence            999999999999999999997 899988 7777775543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.85  E-value=7e-20  Score=197.06  Aligned_cols=225  Identities=14%  Similarity=0.124  Sum_probs=186.7

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC--H
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--Y  528 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd--~  528 (721)
                      ++|+..++++|.+||++..+|++|+.++..+++          +++++..++++|..+|. +..|+.|++++..+|+  +
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            689999999999999999999999999998887          68999999999999995 8999999999999994  9


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984          529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY  607 (721)
Q Consensus       529 eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~  607 (721)
                      ++++..++++++++|.|..      +...++-+...... +++                  ++..++++|+.+|+|..+|
T Consensus       127 ~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l~~~~~e------------------el~~~~~~I~~~p~N~SAW  182 (331)
T 3dss_A          127 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW  182 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHH------------------HHHHHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCcCHHH------------------HHHHHHHHHHHCCCCHHHH
Confidence            9999999999999999843      22222222222222 222                  4889999999999999999


Q ss_pred             HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 004984          608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----------SHCEEGLRKAE  662 (721)
Q Consensus       608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-----------G~~deAl~~ye  662 (721)
                      ++++.++..+              +.++++++.+.+|+..+|+|..+++|+.|++...           +.++++++.++
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            9999999998              5689999999999999999999999998888887           56899999999


Q ss_pred             HHHhcCCCHHHHHHHHHHhhccCCCCCchh-hHHHHHHHhhcCCCCcccccc
Q 004984          663 ESIQMKRSFEAFFLKAYALADSSQDSSCSS-TVVSLLEDALKCPSDRLRKGT  713 (721)
Q Consensus       663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  713 (721)
                      +.+++.|++ .|.+++.++....+||.... .+.+.|+...+  =|-+|||-
T Consensus       263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~  311 (331)
T 3dss_A          263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY  311 (331)
T ss_dssp             HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHH
T ss_pred             HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhH
Confidence            999999998 89999999887777765332 45556665553  48888873

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.85  E-value=3e-19  Score=174.65  Aligned_cols=204  Identities=10%  Similarity=-0.040  Sum_probs=128.9

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN  494 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~  494 (721)
                      ..++..+|.++...|++++|+..+.++++..|                              +++.+|..+|.++..+|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~   57 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP------------------------------KNELAWLVRAEIYQYLKV   57 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc------------------------------cchHHHHHHHHHHHHcCC
Confidence            44555666666666666666665555555544                              444455555555555555


Q ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984          495 VEAALAEINRILGFKLA-LECLELRFCFFLAL-EDYQAALCDVQAILT--LSPDYRMFEGRVAASQLHMLVREHIDNWTI  570 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-gd~eeAl~d~~kal~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~  570 (721)
                      +++|+..|+++++++|+ ...+..+|.++..+ |++++|+..|+++++  .+|++      ..+....+.+.....++++
T Consensus        58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP------YIANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH------HHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch------HHHHHHHHHHHHHcCCHHH
Confidence            55555555555555543 34444444555555 555555555555555  22221      1122222222222333333


Q ss_pred             HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHH
Q 004984          571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILY  649 (721)
Q Consensus       571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-~~~ea~~~~G~~Ly  649 (721)
                      |                  +..++++++.+|.++.+++++|.++..+|++++|+..++++++++| ++..++...+.++.
T Consensus       132 A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (225)
T 2vq2_A          132 A------------------EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK  193 (225)
T ss_dssp             H------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             H------------------HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3                  4455555555566667788899999999999999999999999999 99999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCHH
Q 004984          650 DTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       650 ~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      ..|+.++|...+++++.+.|+..
T Consensus       194 ~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          194 ALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCcHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999877

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.84  E-value=2e-21  Score=179.02  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=93.1

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+++|++|+|||.|||++|+||++||.++     ..+|+|+  ++++++|+.+++|+|||+++ ++.++
T Consensus        22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~   93 (121)
T 1buo_A           22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAED   93 (121)
T ss_dssp             HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred             HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHH
Confidence            4467889999999999999999999999999999999875     4689998  49999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhc
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLV  282 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l  282 (721)
                      +.+++.+|++|+++.|++.|+++|.+.+
T Consensus        94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           94 LDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998753

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.84  E-value=1.5e-21  Score=178.26  Aligned_cols=99  Identities=21%  Similarity=0.313  Sum_probs=91.2

Q ss_pred             cCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHHH
Q 004984          176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL  255 (721)
Q Consensus       176 ~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~v  255 (721)
                      ..++.+|||+|+|+|++|+|||.|||++|+||++||.++    .+..|.|+.+++++++|+.+++|+|||++. ++.+++
T Consensus        17 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v   91 (116)
T 2vpk_A           17 REAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNV   91 (116)
T ss_dssp             HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred             HhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHH
Confidence            457789999999999999999999999999999999987    356788873349999999999999999999 999999


Q ss_pred             HHHHHHhhhcChhhHHHHHHHHHH
Q 004984          256 LEILIFANKFCCERLKDACDRKLA  279 (721)
Q Consensus       256 ~~LL~aAd~~~v~~L~~~C~~~L~  279 (721)
                      .+++.+|++|+++.|++.|+++|.
T Consensus        92 ~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           92 KEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999999999999985

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.84  E-value=6.5e-19  Score=172.31  Aligned_cols=210  Identities=11%  Similarity=-0.067  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC  459 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~  459 (721)
                      ...+++.+|..+...|++++|+..|+++++..+  ..++..+|.++...|++++|+..                      
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----------------------   64 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES----------------------   64 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHH----------------------
Confidence            467788999999999999999999999999854  45677778888777776666555                      


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK-QNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l-g~~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                              |+++++++|+++.+|.++|.++... |++++|+..|+++++  .+|+ ...+..+|.++..+|++++|+..|
T Consensus        65 --------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A           65 --------FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             --------HHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --------HHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                    4556666666667777777777777 777777777777777  4443 455566677777777777777777


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC-CChhHHHHHHHHH
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLL  614 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P-~~~~~~~~~g~~L  614 (721)
                      +++++++|++..      +...++.+.....++++|                  +..++++++.+| .++..+...+.++
T Consensus       137 ~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (225)
T 2vq2_A          137 KRSLAAQPQFPP------AFKELARTKMLAGQLGDA------------------DYYFKKYQSRVEVLQADDLLLGWKIA  192 (225)
T ss_dssp             HHHHHHSTTCHH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCch------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            777777777622      333333333334444444                  666777777777 7777888888899


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEG  645 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G  645 (721)
                      ...|+.++|...++.+++.+|+++++...+.
T Consensus       193 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  223 (225)
T 2vq2_A          193 KALGNAQAAYEYEAQLQANFPYSEELQTVLT  223 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence            9999999999999999999999998876653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.84  E-value=8.5e-20  Score=192.38  Aligned_cols=247  Identities=9%  Similarity=-0.022  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------ccch-------HHHHHHHHHHHh-ccc--hhhHhhHHHHHHH
Q 004984          365 TVCFLERLLESAETDRQRLLAFHQLGCVRLL-------RKEY-------DEAEHLFEAAVN-AGH--IYSIAGLARLGYI  427 (721)
Q Consensus       365 ~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~-------~g~y-------~eA~~~f~~AL~-~~~--~~A~~~lg~~~~~  427 (721)
                      +...+++++...+.   ...+++++|..+..       .|++       ++|+..|++||+ ++|  ..++..+|.++..
T Consensus        35 a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           35 VMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            34577777764442   25677777777654       4664       777777777777 443  3345556666655


Q ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRIL  506 (721)
Q Consensus       428 ~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~-ay~~rg~~l~~lg~~~eAl~~~~kAL  506 (721)
                      +|++                              ++|...|++|++++|+++. +|.++|.++.++|++++|+..|++|+
T Consensus       112 ~~~~------------------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          112 RMKY------------------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             TTCH------------------------------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cCCH------------------------------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5555                              4555556666666666665 67777777777777777777777777


Q ss_pred             hcCCC-HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 004984          507 GFKLA-LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV  584 (721)
Q Consensus       507 ~l~P~-~~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~  584 (721)
                      +++|. ...+...+.+. ..+|++++|+..|+++++++|++..      +....+.+.....+.++              
T Consensus       162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~--------------  221 (308)
T 2ond_A          162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------YVLAYIDYLSHLNEDNN--------------  221 (308)
T ss_dssp             TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCHHH--------------
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHCCCHHH--------------
Confidence            77664 44443333332 2267777777777777777777622      22222222222223333              


Q ss_pred             cccchHHHHHHHHHh---CC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          585 DDIGSLSVIYQMLES---DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       585 dd~~al~~~~qaL~l---~P-~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                          |...|+++++.   +| .+..+|.+.+..+...|+.++|...+++|+++.|++.+-... +.+           ..
T Consensus       222 ----A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-----------~~  285 (308)
T 2ond_A          222 ----TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-----------VD  285 (308)
T ss_dssp             ----HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-----------HT
T ss_pred             ----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-----------HH
Confidence                36677777774   44 367788888999999999999999999999999987754421 221           12


Q ss_pred             HHHHHhcCCCHH-HHHHHHHH
Q 004984          661 AEESIQMKRSFE-AFFLKAYA  680 (721)
Q Consensus       661 ye~Ai~i~~~~~-a~~~~~~~  680 (721)
                      -.+.+.++|... +.+.-||+
T Consensus       286 r~~~l~~~P~~~~~ln~lgY~  306 (308)
T 2ond_A          286 RYKFMDLYPCSASELKALGYK  306 (308)
T ss_dssp             TTCBTTBCSSCHHHHHTTTCC
T ss_pred             HHHhcccCCCCHHHHHhcCCC
Confidence            226777888887 76667765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.84  E-value=4.1e-19  Score=178.50  Aligned_cols=209  Identities=14%  Similarity=-0.016  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC  459 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~  459 (721)
                      ...+++.+|..+...|++++|+..|+++++.+  ...++..+|.++...|++++|++.+                     
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~---------------------   94 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY---------------------   94 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHH---------------------
Confidence            36777888999999999999999999988874  3455667777777777766665554                     


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                               +++++++|+++.+|.++|.++...|++++|+..|+++++  .+|. +..+..+|.++..+|++++|+..|+
T Consensus        95 ---------~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  165 (252)
T 2ho1_A           95 ---------RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE  165 (252)
T ss_dssp             ---------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------HHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                     555555666666666666666666666666666666666  5554 4455556666666666666666666


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      ++++++|++.      .+...++.+.....++++|                  +..++++++.+|.++.++..++.++..
T Consensus       166 ~~~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          166 KSLRLNRNQP------SVALEMADLLYKEREYVPA------------------RQYYDLFAQGGGQNARSLLLGIRLAKV  221 (252)
T ss_dssp             HHHHHCSCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            6666666652      2233333333333444444                  556666677777777788889999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                      +|++++|++.+++++++.|++.++...+
T Consensus       222 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          222 FEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=1.7e-20  Score=221.92  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh--
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~--  457 (721)
                      .+.+++++|.++..+|++++|++.|++||+++  +..++.++|.++..+|++++|++.|++||+++|+++.+|.++|.  
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            47889999999999999999999999999995  56688999999999999999999999999999999999999985  


Q ss_pred             --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       458 --~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                        .++.++|++.|++|++++|+++.+|+++|.+|.++|++++|++.|++||+++|+ +..+.++|.++..+|++++|++.
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~  167 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER  167 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence              477899999999999999999999999999999999999999999999999997 88899999999999999999999


Q ss_pred             HHHHHhhCCCc
Q 004984          535 VQAILTLSPDY  545 (721)
Q Consensus       535 ~~kal~L~P~~  545 (721)
                      |++++++.|+.
T Consensus       168 ~~kal~l~~~~  178 (723)
T 4gyw_A          168 MKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhChhH
Confidence            99999998775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.84  E-value=1.2e-19  Score=181.20  Aligned_cols=202  Identities=9%  Similarity=-0.066  Sum_probs=140.5

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT  491 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~  491 (721)
                      ++..+|.++..+|++++|+..|+++++..| +...+++++|.    .++.++|+..|++|++++|+++.+|.++|.++..
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   88 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD   88 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            344444444444444444444444444444 33344444432    1344677777888888999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhhHHHHHHHHHH
Q 004984          492 KQNVEAALAEINRILGFKLA-L-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGRVAASQLHMLV  561 (721)
Q Consensus       492 lg~~~eAl~~~~kAL~l~P~-~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~--~~~~~~~~~a~~~~~~l  561 (721)
                      +|++++|+..|+++++++|+ +       ..+..+|.++..+|++++|+..|+++++++|+  +..+      ...++.+
T Consensus        89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~~~l~~~  162 (228)
T 4i17_A           89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA------LYSLGVL  162 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH------HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH------HHHHHHH
Confidence            99999999999999999996 5       44777888999999999999999999999998  6332      2222211


Q ss_pred             HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                      ...     ..                  ...++++..+.+.+...+  .+......+.+++|+..+++|++++|++.++.
T Consensus       163 ~~~-----~~------------------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  217 (228)
T 4i17_A          163 FYN-----NG------------------ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK  217 (228)
T ss_dssp             HHH-----HH------------------HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHH-----HH------------------HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence            100     01                  123566666666664443  55566778889999999999999999999999


Q ss_pred             HHHHHHHH
Q 004984          642 VYEGWILY  649 (721)
Q Consensus       642 ~~~G~~Ly  649 (721)
                      ..++.+.-
T Consensus       218 ~~l~~i~~  225 (228)
T 4i17_A          218 QMQDQVKA  225 (228)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            98888754

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.84  E-value=8.6e-22  Score=185.18  Aligned_cols=102  Identities=13%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.+++    ..+|+|++  +++++|+.+|+|+|||++. ++.++
T Consensus        19 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~--~~~~~f~~lL~fiYtg~~~-i~~~~   91 (135)
T 2yy9_A           19 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPA--GFAEIFGLLLDFFYTGHLA-LTSGN   91 (135)
T ss_dssp             HHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECG--GGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred             HHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCC--CCHHHHHHHHHHHhCCCCC-CCHHH
Confidence            45688899999999999999999999999999999999987    56799984  9999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                      +.+|+.+|++|+++.|++.|+++|.+.+.
T Consensus        92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~  120 (135)
T 2yy9_A           92 RDQVLLAAKELRVPEAVELCQSFQPQTSV  120 (135)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=3.7e-20  Score=194.11  Aligned_cols=199  Identities=10%  Similarity=0.001  Sum_probs=124.5

Q ss_pred             hHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhc-CC
Q 004984          462 DKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLAL-ED  527 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~l-gd  527 (721)
                      ++|+..|++|+++.+.      .+.+|.++|.+|..+|++++|+..|++||++.|.       ...+.+.|.+|... |+
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~  133 (292)
T 1qqe_A           54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD  133 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence            4444445555444321      1456666777777777777777777777766542       12345566666664 77


Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh--
Q 004984          528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV--  605 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~--  605 (721)
                      +++|+..|++|+++.|+.........+...++.+.....++++|                  +..++++++++|.+..  
T Consensus       134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHhcCCccc
Confidence            77777777777776664311111122333333333444444444                  6667777777666554  


Q ss_pred             -----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH-----HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          606 -----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL-----VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEA  673 (721)
Q Consensus       606 -----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~-----~~~G~~Ly--~~G~~deAl~~ye~Ai~i~~~~~a  673 (721)
                           +++++|.++..+|++++|+..|+++++++|+..++.     ..++..+-  +.+++++|+..|++++.++|.+.-
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence                 678999999999999999999999999999987753     33444443  568899999999999999999876


Q ss_pred             HHHHH
Q 004984          674 FFLKA  678 (721)
Q Consensus       674 ~~~~~  678 (721)
                      ..+|.
T Consensus       276 ~~~~~  280 (292)
T 1qqe_A          276 ILNKI  280 (292)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=2e-20  Score=219.81  Aligned_cols=199  Identities=10%  Similarity=-0.052  Sum_probs=159.6

Q ss_pred             hcCCCcHHHHHHHh-hcCChhHHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 004984          443 SSVTPLGWMYQERS-LYCEGDKRWEDLDKAT--------ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L  512 (721)
Q Consensus       443 ~~~~~~~~ay~~rg-~~~~~~eAl~d~~kAi--------eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~  512 (721)
                      ..+|+++.+++.++ ..++.++|++.|++|+        +++|+++.+|.++|.++.++|++++|+..|+++++++|+ +
T Consensus       388 ~~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             CCCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             cCCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            34677776666665 3466699999999999        999999999999999999999999999999999999996 8


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 004984          513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV  592 (721)
Q Consensus       513 ~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~  592 (721)
                      ..++++|.++..+|++++|+.+|++|++++|++..      +...++.+.....                   +++.+..
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~~~~~g-------------------~~~~~~~  522 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------PKLALAATAELAG-------------------NTDEHKF  522 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHHT-------------------CCCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcC-------------------ChHHHHH
Confidence            88999999999999999999999999999999844      2233322222222                   2222447


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004984          593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQ  666 (721)
Q Consensus       593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~  666 (721)
                      |+++|+++|.++.+|+++|.++.++|++++|++.|++|++++|+++++++++|.+++..|+.+++ ...+++|++
T Consensus       523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~  597 (681)
T 2pzi_A          523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR  597 (681)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999887774444 444444443

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.83  E-value=3.5e-22  Score=184.97  Aligned_cols=101  Identities=19%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+  ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus        23 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~-~v~~~~f~~lL~~iYtg~~~-i~~~~   98 (124)
T 2ihc_A           23 QRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPE-EVTVKGFEPLIQFAYTAKLI-LSKEN   98 (124)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCT-TSCHHHHHHHHHHHHHSEEE-EETTT
T ss_pred             HHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecC-CcCHHHHHHHHHHhcCCCcc-cCHHH
Confidence            34677899999999999999999999999999999999999775  5788853 69999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLA  279 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~  279 (721)
                      +.+|+.+|++|+++.|++.|++||.
T Consensus        99 v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           99 VDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            9999999999999999999999874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.83  E-value=4.9e-20  Score=189.84  Aligned_cols=266  Identities=14%  Similarity=-0.031  Sum_probs=214.7

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHhh----cCChhHHHHHHHHHHhc------CCCChHHH
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPY  482 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~----~~ay~~rg~----~~~~~eAl~d~~kAieL------dP~~~~ay  482 (721)
                      .+...|..+...|++++|+..|+++++..|+.    +.++..+|.    .++.++|+..|++|+++      .|..+.+|
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            45667999999999999999999999999876    456666654    35669999999999999      77778999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 004984          483 MYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED--------------------YQAALCDV  535 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd--------------------~eeAl~d~  535 (721)
                      ..+|.++..+|++++|+..+++++++.|.       ...+..+|.++..+|+                    +++|+..|
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999998652       2256778999999999                    99999999


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHH
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFR  609 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~------~~~~  609 (721)
                      ++++++.+..........+....+.+.....++++|                  +..+++++++.|....      ++++
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA------------------VIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            999987543222222233455555555555555555                  7788888888776555      9999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFL  676 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~-------~a~~~  676 (721)
                      +|.++..+|++++|+..+++++++.|..      +.++.++|.++..+|++++|+..+++|+++.|..       .+++.
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  308 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS  308 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            9999999999999999999999998887      8899999999999999999999999999986654       27778


Q ss_pred             HHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984          677 KAYALADSSQDSSCSSTVVSLLEDALKC  704 (721)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (721)
                      .|.++...+    --...+..+++|++.
T Consensus       309 la~~~~~~g----~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          309 LGNAYTALG----NHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHT----CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcC----ChHHHHHHHHHHHHH
Confidence            888776654    234556666666653

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.83  E-value=5.7e-22  Score=183.46  Aligned_cols=100  Identities=21%  Similarity=0.285  Sum_probs=93.2

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|  ...|.+++ ++++++|+.+++|+|||++. ++.++
T Consensus        26 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~  101 (125)
T 3ohu_A           26 QRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSREN  101 (125)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTT
T ss_pred             HHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHH
Confidence            4568889999999999999999999999999999999999977  67899984 49999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKL  278 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L  278 (721)
                      +.+++.+|++|+++.|++.|++||
T Consensus       102 v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A          102 IREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHhC
Confidence            999999999999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=9.3e-20  Score=214.17  Aligned_cols=183  Identities=11%  Similarity=-0.033  Sum_probs=168.8

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL--------GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP  543 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL--------~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P  543 (721)
                      .++|+++.+++..|   ...|++++|++.|++++        +.+|+ .+.+..+|.++..+|++++|+..|+++++++|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            67999999999888   88999999999999999        99996 78889999999999999999999999999999


Q ss_pred             CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984          544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA  623 (721)
                      ++.      .+...++.+.....++++|                  +..|+++|+++|+++.+|+++|.++.++|++++ 
T Consensus       465 ~~~------~a~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-  519 (681)
T 2pzi_A          465 WRW------RLVWYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-  519 (681)
T ss_dssp             CCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred             chH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence            983      4566666666667777777                  889999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       624 l~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      +..|++|++++|+++++++++|.++..+|++++|++.|++|++++|++. |++++|.++..
T Consensus       520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999988 99999999844

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.82  E-value=4.6e-21  Score=176.11  Aligned_cols=97  Identities=18%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+++|++|+|||.|||++|+||++||.++     +..|.++  ++++++|+.+++|+|||++. ++.++
T Consensus        21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~   92 (119)
T 2q81_A           21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPEN   92 (119)
T ss_dssp             HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred             HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence            3457889999999999999999999999999999999973     4578887  49999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHH
Q 004984          255 LLEILIFANKFCCERLKDACDRKLA  279 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~  279 (721)
                      +.+++.+|++|+++.|++.|++||.
T Consensus        93 ~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           93 VDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999999999974

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.3e-21  Score=180.56  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=87.1

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.||+++|+||++||.++    ...+|+|++ ++++++|+.+++|+|||++. ++.++
T Consensus        27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~  100 (129)
T 3ga1_A           27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGD  100 (129)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTT
T ss_pred             HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHH
Confidence            3457889999999999999999999999999999999987    567899963 59999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHhh
Q 004984          255 LLEILIFANKFCCERLKDACDRKLASL  281 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~~  281 (721)
                      +.+++.+|++|+++.|++.|++||.+.
T Consensus       101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A          101 QDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             HHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.82  E-value=6.7e-19  Score=187.74  Aligned_cols=201  Identities=12%  Similarity=0.033  Sum_probs=173.5

Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC-HHHHHHHHHHH----Hhc---CCHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ--NVEAALAEINRILGFKLA-LECLELRFCFF----LAL---EDYQA  530 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg--~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~----~~l---gd~ee  530 (721)
                      .++|+..++++|++||++..+|++||.++..+|  ++++|+..++++|.++|+ +..|+.|++++    ..+   +++++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            379999999999999999999999999999999  999999999999999996 89999999988    777   89999


Q ss_pred             HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 004984          531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ  610 (721)
Q Consensus       531 Al~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~  610 (721)
                      ++..++++++++|++..      +.+.++-+......++                ..+++..++++|+.||+|-.+|++|
T Consensus       129 EL~~~~~~l~~~pkny~------aW~~R~~vl~~l~~~~----------------~~~EL~~~~~~i~~d~~N~sAW~~R  186 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHH------VWSYRKWLVDTFDLHN----------------DAKELSFVDKVIDTDLKNNSAWSHR  186 (306)
T ss_dssp             HHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcccC----------------hHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999843      3333333333334443                0123889999999999999999999


Q ss_pred             HHHHHHcCC------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcC---C-CHHHHHHHHH
Q 004984          611 SLLLLRLNC------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEESIQMK---R-SFEAFFLKAY  679 (721)
Q Consensus       611 g~~L~~lg~------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl-~~ye~Ai~i~---~-~~~a~~~~~~  679 (721)
                      +.++..+|+      ++++++.+++++..+|+|..+++++|+++-..|+..+++ ..+++.+.++   | |..|...+|.
T Consensus       187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~  266 (306)
T 3dra_A          187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK  266 (306)
T ss_dssp             HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            999999998      999999999999999999999999999999999977755 5777788876   4 4448888888


Q ss_pred             Hhhc
Q 004984          680 ALAD  683 (721)
Q Consensus       680 ~~~~  683 (721)
                      +++.
T Consensus       267 ~~~~  270 (306)
T 3dra_A          267 IYTQ  270 (306)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=185.16  Aligned_cols=247  Identities=13%  Similarity=0.005  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------c--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-----
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-----  445 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~-----  445 (721)
                      ....+++.+|.++...|++++|+..|++|+++        .  ...++..+|.++...|++++|+..+.++++..     
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34677889999999999999999999999985        2  24467889999999999999999999999873     


Q ss_pred             ---CCcHHHHHHHhh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 004984          446 ---TPLGWMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGF--  508 (721)
Q Consensus       446 ---~~~~~ay~~rg~----~~~~~eAl~d~~kAieLd--------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--  508 (721)
                         |..+.++...|.    .++.++|+..|++++++.        |....+|.++|.++..+|++++|+..|++++++  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               556677777764    356699999999999984        778899999999999999999999999999998  


Q ss_pred             ------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984          509 ------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW  581 (721)
Q Consensus       509 ------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~  581 (721)
                            +|. ...+..+|.++..+|++++|+..|++++++.|+.....  .  ..      .....+..           
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~--~~------~~~~~~~~-----------  243 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS--V--DD------ENKPIWMH-----------  243 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----------------CCHHHH-----------
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C--Cc------chHHHHHH-----------
Confidence                  554 55677889999999999999999999999866531000  0  00      00000000           


Q ss_pred             ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       582 ~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                                            ...+...+......+.+.+|+..++++....|..+.++.++|.++..+|++++|+..|
T Consensus       244 ----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          244 ----------------------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             ----------------------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ----------------------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                  1112223333444566666777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCC
Q 004984          662 EESIQMKRS  670 (721)
Q Consensus       662 e~Ai~i~~~  670 (721)
                      ++|+++.|.
T Consensus       302 ~~al~l~~~  310 (311)
T 3nf1_A          302 EAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhc
Confidence            777777664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.81  E-value=3.3e-18  Score=183.19  Aligned_cols=289  Identities=14%  Similarity=0.089  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--------
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP--------  447 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~--------  447 (721)
                      ......+|.++...|++++|+..+++|++..+.       .++..+|.++..+|++++|...+.++++..+.        
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            455678899999999999999999999987321       15677899999999999999999999987543        


Q ss_pred             -----cHHHHHHHhhcCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 004984          448 -----LGWMYQERSLYCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---  511 (721)
Q Consensus       448 -----~~~ay~~rg~~~~~~eAl~d~~kAieLd--------P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---  511 (721)
                           .|.++..+   |+.++|+..|++++++.        |....++.++|.++..+|++++|+..+++++++.|.   
T Consensus        94 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  170 (373)
T 1hz4_A           94 WSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence                 23334444   45599999999999986        455678999999999999999999999999998774   


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 004984          512 ---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI  587 (721)
Q Consensus       512 ---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~  587 (721)
                         ...+.+++.++...|++++|+..+++++++.+.... .............+.....++++|                
T Consensus       171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A----------------  234 (373)
T 1hz4_A          171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA----------------  234 (373)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH----------------
Confidence               234667889999999999999999999998544211 000010111111122233444444                


Q ss_pred             chHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHH
Q 004984          588 GSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       588 ~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deA  657 (721)
                        ...++++++..|...    ..+.++|.++..+|++++|+..++++++..+..      .+++..+|.++..+|++++|
T Consensus       235 --~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  312 (373)
T 1hz4_A          235 --ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  312 (373)
T ss_dssp             --HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             --HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence              667777777777642    256789999999999999999999999987653      36889999999999999999


Q ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 004984          658 LRKAEESIQMKRSFE--AFFLKAYALADSSQDSSCSSTVVSLLEDALKC  704 (721)
Q Consensus       658 l~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (721)
                      ...+++|+.+.+...  -+|+      |.      ...+..+|+..++-
T Consensus       313 ~~~l~~al~~~~~~g~~~~~~------~~------g~~~~~ll~~~~~~  349 (373)
T 1hz4_A          313 QRVLLDALKLANRTGFISHFV------IE------GEAMAQQLRQLIQL  349 (373)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH------TT------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccHHHHHH------Hc------cHHHHHHHHHHHhC
Confidence            999999999866433  2222      11      14566777666544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.81  E-value=1.6e-18  Score=193.76  Aligned_cols=159  Identities=14%  Similarity=0.047  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhccch---HHHHHHHHHHHhccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcCCC-----cHH
Q 004984          384 LAFHQLGCVRLLRKEY---DEAEHLFEAAVNAGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSVTP-----LGW  450 (721)
Q Consensus       384 la~~~lG~~~~~~g~y---~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~~~-----~~~  450 (721)
                      .+++++|.++...|++   ++|+.+|++|++. +..+++.+|.+++..|     ++++|+.+|.++++..+.     +|.
T Consensus        36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~  114 (452)
T 3e4b_A           36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAM  114 (452)
T ss_dssp             TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3455666666666665   6666666666665 5556666666555544     556666666666664432     233


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHhcC
Q 004984          451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE----INRILGFKLALECLELRFCFFLALE  526 (721)
Q Consensus       451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~----~~kAL~l~P~~~~~~~R~~~~~~lg  526 (721)
                      +|...+......+++..+.++.+  +.++.+++++|.+|...+.+++++..    ++++..-+  +.+++++|.+|...|
T Consensus       115 ~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g  190 (452)
T 3e4b_A          115 LYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT--DICYVELATVYQKKQ  190 (452)
T ss_dssp             HHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTT
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Confidence            33333322222344444444443  23355666666666666644444443    44444333  346677888888888


Q ss_pred             ---CHHHHHHHHHHHHhhCCCchh
Q 004984          527 ---DYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       527 ---d~eeAl~d~~kal~L~P~~~~  547 (721)
                         ++++|+..|+++.+.+|....
T Consensus       191 ~~~~~~~A~~~~~~aa~~g~~~a~  214 (452)
T 3e4b_A          191 QPEQQAELLKQMEAGVSRGTVTAQ  214 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             CcccHHHHHHHHHHHHHCCCHHHH
Confidence               888888888888888887743

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.80  E-value=3.3e-17  Score=167.96  Aligned_cols=208  Identities=11%  Similarity=0.025  Sum_probs=170.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALC  533 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~  533 (721)
                      ++|+..|++|++  |+++.++.++|.++..    .+++++|+..|++|++++ ++..++++|.++..    .|++++|+.
T Consensus        23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~   99 (273)
T 1ouv_A           23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQ   99 (273)
T ss_dssp             HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence            455555666776  7788999999999999    999999999999999886 68888999999999    999999999


Q ss_pred             HHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 004984          534 DVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR  609 (721)
Q Consensus       534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~  609 (721)
                      .|+++++++  +      ..+...++.+...    ..++++|                  +..++++++.+  ++.++++
T Consensus       100 ~~~~a~~~~--~------~~a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A          100 YYSKACDLK--Y------AEGCASLGGIYHDGKVVTRDFKKA------------------VEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHTT--C------HHHHHHHHHHHHHCSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHcC--C------ccHHHHHHHHHHcCCCcccCHHHH------------------HHHHHHHHhcC--cHHHHHH
Confidence            999999985  3      2234444433333    4444444                  88999999986  7889999


Q ss_pred             HHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 004984          610 QSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYAL  681 (721)
Q Consensus       610 ~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~  681 (721)
                      +|.++..    .+++++|+..|++|++.  +++++++++|+++..    .|++++|+..|++|+++.| ..++++.|.++
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~  228 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence            9999999    99999999999999988  468999999999999    9999999999999999988 67999999999


Q ss_pred             hccCCCCCchhhHHHHHHHhhc
Q 004984          682 ADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      ....-....-..-+..++.|+.
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HcCCCcccCHHHHHHHHHHHHH
Confidence            8732222223344566666654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.80  E-value=1.1e-18  Score=188.48  Aligned_cols=190  Identities=9%  Similarity=-0.079  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC
Q 004984          462 DKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED  527 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~-------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd  527 (721)
                      ++|+..|++|+++.|+.       +.++.++|.++..+|++++|+..|++|+++.|.       ...+.++|.++..+|+
T Consensus       160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  239 (383)
T 3ulq_A          160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ  239 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence            44444444444442222       335566666666666666666666666655331       1234455666666666


Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCC
Q 004984          528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAP  602 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l-----~P~  602 (721)
                      +++|+..|++++++.+......+...+...++.+.....++++|                  +..+++++++     +|.
T Consensus       240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~  301 (383)
T 3ulq_A          240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA------------------HEYHSKGMAYSQKAGDVI  301 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHcCCHH
Confidence            66666666666663211100000122333333333333444444                  4455555555     333


Q ss_pred             ChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          603 KGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      ....+..+|.++...|+   .++|+..++++ ...|...+++.++|.++..+|++++|+..|++|+++..+
T Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            33345678888999998   88899998887 667777889999999999999999999999999988654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.80  E-value=1.4e-17  Score=179.10  Aligned_cols=191  Identities=11%  Similarity=0.034  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKL-ALECLELRFCFFLALED-YQAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~--~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd-~eeAl~d~~k  537 (721)
                      ++++..+++++..+|++..+|++|+.++..+|+  ++++++.++++|+++| ++.+|..|+++...+|+ +++++..+++
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~  170 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS  170 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            788999999999999999999999999999995  8999999999999999 48899999999999999 6999999999


Q ss_pred             HHhhCCCchhhhhhHHHHHHHHHHHHhh--------------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 004984          538 ILTLSPDYRMFEGRVAASQLHMLVREHI--------------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK  603 (721)
Q Consensus       538 al~L~P~~~~~~~~~~a~~~~~~l~~~~--------------~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~  603 (721)
                      +++.+|.|.-      +.+.++.+....              ..+++                  ++..++++|..+|++
T Consensus       171 ~I~~~p~N~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e------------------Ele~~~~ai~~~P~d  226 (331)
T 3dss_A          171 LITRNFSNYS------SWHYRSCLLPQLHPQPDSGPQGRLPENVLLK------------------ELELVQNAFFTDPND  226 (331)
T ss_dssp             HHHHCSCCHH------HHHHHHHHHHHHSCCC------CCCHHHHHH------------------HHHHHHHHHHHSTTC
T ss_pred             HHHHCCCCHH------HHHHHHHHHHHhhhccccccccccchHHHHH------------------HHHHHHHHHHhCCCC
Confidence            9999999832      333333222222              11222                  488999999999999


Q ss_pred             hhHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCC
Q 004984          604 GVLYFRQSLLLLRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       604 ~~~~~~~g~~L~~l-----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly---~~G~~deAl~~ye~Ai~i~~  669 (721)
                      ..+|+.+.-++.+.           +..++++..++++++++|++...+.....+.-   ..|..++....+.+.++++|
T Consensus       227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp  306 (331)
T 3dss_A          227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  306 (331)
T ss_dssp             HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence            99997555555544           45789999999999999999655444433322   36899999999999999999


Q ss_pred             CHHHHHH
Q 004984          670 SFEAFFL  676 (721)
Q Consensus       670 ~~~a~~~  676 (721)
                      -=.-|+.
T Consensus       307 ~r~~~y~  313 (331)
T 3dss_A          307 MRAAYLD  313 (331)
T ss_dssp             GGHHHHH
T ss_pred             chhhHHH
Confidence            7765543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.80  E-value=1.6e-18  Score=172.54  Aligned_cols=171  Identities=11%  Similarity=-0.001  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL----------------RFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~----------------R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      +..+..+|..++..|++++|+..|+++++++|+ +..++.                +|.++..+|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445556666666666666666666666666664 455555                666666666666666666666666


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC--  619 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~--  619 (721)
                      +|++.      .+...++.+.....++++|                  +..|+++|+++|.++.+|+++|.++..+|.  
T Consensus        84 ~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           84 APNNV------DCLEACAEMQVCRGQEKDA------------------LRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             CTTCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            66662      2333344444444444444                  566666777777777888888888877664  


Q ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984          620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF  674 (721)
Q Consensus       620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~  674 (721)
                      .++|...+++++...|. ..+++++|.+++.+|++++|+..|++|++++|+.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  193 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence            45677788887754443 4588999999999999999999999999999998743

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.80  E-value=4.1e-20  Score=170.17  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=85.6

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      ...++.+|||+|+|+|++|+|||.|||++|+||++         ....|+|+  ++++++|+.+|+|+|||++. ++.++
T Consensus        24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~   91 (119)
T 3m5b_A           24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGE   91 (119)
T ss_dssp             HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGG
T ss_pred             HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence            34578899999999999999999999999999985         34678888  59999999999999999999 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984          255 LLEILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      +++++.+|++|+++.|++.|++++..
T Consensus        92 v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           92 LRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            99999999999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=185.32  Aligned_cols=233  Identities=11%  Similarity=-0.003  Sum_probs=165.5

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL--------  474 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~~~~~~ay~~rg~----~~~~~eAl~d~~kAieL--------  474 (721)
                      ..++..+|.++...|++++|+..+.+++++        .|..+.++..+|.    .++.++|+..|++|+++        
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999995        5556677776664    36669999999999998        


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLALEDYQAALCDVQAILTL----  541 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L----  541 (721)
                      +|..+.+|.++|.++..+|++++|+..|++++++.        |. ...+..+|.++..+|++++|+..|++++++    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999999984        32 455677899999999999999999999998    


Q ss_pred             ----CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---------ChhHHH
Q 004984          542 ----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYF  608 (721)
Q Consensus       542 ----~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~---------~~~~~~  608 (721)
                          +|..      ..+...++.+.....++++|                  +..+++++++.|.         ....+.
T Consensus       187 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~  242 (311)
T 3nf1_A          187 LGPDDPNV------AKTKNNLASCYLKQGKFKQA------------------ETLYKEILTRAHEREFGSVDDENKPIWM  242 (311)
T ss_dssp             SCTTCHHH------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHHHC------CCHHH
T ss_pred             hCCCCHHH------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence                4443      33455555555556666666                  7788888876443         222222


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 004984          609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD  687 (721)
Q Consensus       609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~  687 (721)
                      ..                            ..+...+..+...+.+++|+..+++++...|... +++..|.++...+- 
T Consensus       243 ~~----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-  293 (311)
T 3nf1_A          243 HA----------------------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-  293 (311)
T ss_dssp             HH----------------------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-
T ss_pred             HH----------------------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-
Confidence            22                            2334444455567888888889999998888877 88888988876542 


Q ss_pred             CCchhhHHHHHHHhhc
Q 004984          688 SSCSSTVVSLLEDALK  703 (721)
Q Consensus       688 ~~~~~~~~~~~~~~~~  703 (721)
                         -..-+..+++|++
T Consensus       294 ---~~~A~~~~~~al~  306 (311)
T 3nf1_A          294 ---FEAAETLEEAAMR  306 (311)
T ss_dssp             ---HHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHH
Confidence               3445666666664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.80  E-value=5.4e-18  Score=173.13  Aligned_cols=182  Identities=9%  Similarity=0.033  Sum_probs=156.2

Q ss_pred             HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       470 kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      ...+++|+.+..++.+|..++..|++++|+..|+++++.+|+    +..++.+|.++..+|++++|+..|++++++.|++
T Consensus         6 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A            6 GSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             -----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            346789999999999999999999999999999999999995    5678889999999999999999999999999976


Q ss_pred             hhhhhhHHHHHHHHHHHHh--------hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----------
Q 004984          546 RMFEGRVAASQLHMLVREH--------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----------  607 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~----------  607 (721)
                      ...   ..+...++.+...        ..++++|                  +..++++++.+|+++.++          
T Consensus        86 ~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           86 PRV---PQAEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TTH---HHHHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             chh---HHHHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            321   2344444444444        4555555                  889999999999998888          


Q ss_pred             -------HHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 004984          608 -------FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDT----------SHCEEGLRKAEESIQM  667 (721)
Q Consensus       608 -------~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~Ly~~----------G~~deAl~~ye~Ai~i  667 (721)
                             +++|.++..+|++++|+..|+++++..|+   .+++++++|.+++.+          |++++|+..|++++++
T Consensus       145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence                   89999999999999999999999999999   567999999999987          9999999999999999


Q ss_pred             CCCHH
Q 004984          668 KRSFE  672 (721)
Q Consensus       668 ~~~~~  672 (721)
                      .|+..
T Consensus       225 ~p~~~  229 (261)
T 3qky_A          225 FPDSP  229 (261)
T ss_dssp             CTTCT
T ss_pred             CCCCh
Confidence            99874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=1.7e-19  Score=207.79  Aligned_cols=186  Identities=13%  Similarity=0.106  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY  528 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~  528 (721)
                      ++|++.+++||+++|++..+|++||.++..+|+          +++|++.++++|+.+|+ +.+|+.|++++..+|  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            889999999999999999999999999999999          99999999999999996 899999999999999  77


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984          529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY  607 (721)
Q Consensus       529 eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~  607 (721)
                      ++|+..+++++++||++..      +...++-+..... .+++                  ++..++++|+.+|.+..+|
T Consensus       126 ~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l~~~~~~------------------el~~~~~~I~~~p~n~saW  181 (567)
T 1dce_A          126 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW  181 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTCCCHHH------------------HHHHHHTTTTTTCCCHHHH
T ss_pred             HHHHHHHHHHHhhcccccc------HHHHHHHHHHHcCCChHH------------------HHHHHHHHHHHCCCCccHH
Confidence            9999999999999999843      2222222222222 3333                  3889999999999999999


Q ss_pred             HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHH------------HHHHH
Q 004984          608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE------------GLRKA  661 (721)
Q Consensus       608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~de------------Al~~y  661 (721)
                      +++|.++.++              +++++|++.+++|+.++|++..+++|+||++...|++++            |+..|
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f  261 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF  261 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred             HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence            9999999996              567999999999999999999999999999999999888            77778


Q ss_pred             HHHHhcCCCH
Q 004984          662 EESIQMKRSF  671 (721)
Q Consensus       662 e~Ai~i~~~~  671 (721)
                      .+|+.++|+.
T Consensus       262 ~~~i~~~~~~  271 (567)
T 1dce_A          262 SRPLTVGSRM  271 (567)
T ss_dssp             EEEECTTBTT
T ss_pred             ccceeccccc
Confidence            9999999874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.79  E-value=2.4e-19  Score=169.81  Aligned_cols=145  Identities=12%  Similarity=0.069  Sum_probs=93.7

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      +|.++..+|++   ++|++.|.+|+..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +..++++|.++..+|
T Consensus         3 LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45555566655   77777777777777777777777777777777777777777777777774 666666777777777


Q ss_pred             CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 004984          527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL  606 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~  606 (721)
                      ++++|+..|+++++++|++                                                          +++
T Consensus        80 ~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~~  101 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQ----------------------------------------------------------KDL  101 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTC----------------------------------------------------------HHH
T ss_pred             chHHHHHHHHHHHHhCCCC----------------------------------------------------------HHH
Confidence            7777766666666666554                                                          234


Q ss_pred             HHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChhHHHHHHHHHHhcCC
Q 004984          607 YFRQSLLLLRLNCPEAAMRS-LQLARQHAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~-~~~Al~l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                      |+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus       102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            55666666666666555444 366666666666666666666666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=6.2e-17  Score=183.08  Aligned_cols=315  Identities=12%  Similarity=0.023  Sum_probs=209.3

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-hhhHhhHHH-HHHHhCCHHHHHH--
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-IYSIAGLAR-LGYIKGHKLWAYE--  436 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~~A~~~lg~-~~~~~G~~~~A~~--  436 (721)
                      +.+.+..++++++...|..   ...+..+|......|++++|+..|++||+..| ...|..++. +....|+..+|.+  
T Consensus        27 ~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~  103 (530)
T 2ooe_A           27 PIDKARKTYERLVAQFPSS---GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM  103 (530)
T ss_dssp             CHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence            4556667778877644322   45566777777788888888888888888743 344555553 4445677766654  


Q ss_pred             --HHHHHHhc---CCCcHHHHHHHhh-------------cCChhHHHHHHHHHHhcCCCCh--HHHHHHHH---------
Q 004984          437 --KLNSVISS---VTPLGWMYQERSL-------------YCEGDKRWEDLDKATALDPTLS--YPYMYRAS---------  487 (721)
Q Consensus       437 --~~~~aI~~---~~~~~~ay~~rg~-------------~~~~~eAl~d~~kAieLdP~~~--~ay~~rg~---------  487 (721)
                        .|++++..   +|+.+.+|...+.             .++.++|...|++|++ .|...  ..|...+.         
T Consensus       104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~  182 (530)
T 2ooe_A          104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHL  182 (530)
T ss_dssp             HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence              67777653   4555555543221             1233788888888888 57653  12211000         


Q ss_pred             ------------------------------------------------------HHHhc------CC----HHHHHHHHH
Q 004984          488 ------------------------------------------------------SLMTK------QN----VEAALAEIN  503 (721)
Q Consensus       488 ------------------------------------------------------~l~~l------g~----~~eAl~~~~  503 (721)
                                                                            +..+.      ++    .+.|+..|+
T Consensus       183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~  262 (530)
T 2ooe_A          183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE  262 (530)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence                                                                  00000      11    125666777


Q ss_pred             HHHhcCCC-HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984          504 RILGFKLA-LECLELRFCFFLA-------LEDYQ-------AALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDN  567 (721)
Q Consensus       504 kAL~l~P~-~~~~~~R~~~~~~-------lgd~e-------eAl~d~~kal~-L~P~~~~~~~~~~a~~~~~~l~~~~~~  567 (721)
                      +||..+|+ ++.|...+.++..       +|+++       +|+..|++|++ ++|++..      +....+.+.....+
T Consensus       263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------LYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------HHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHhcCC
Confidence            77777774 6667777766654       67766       77777777776 6777632      33333333333334


Q ss_pred             hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004984          568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW  646 (721)
Q Consensus       568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~  646 (721)
                      +++|                  ..+|+++|+++|.++ .+|.+.|.++.++|+.++|...|++|++..|.+...+...|+
T Consensus       337 ~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~  398 (530)
T 2ooe_A          337 YEKV------------------HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  398 (530)
T ss_dssp             HHHH------------------HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred             HHHH------------------HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            4444                  788999999999985 689999999999999999999999999999988888887777


Q ss_pred             HHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc-CCCC
Q 004984          647 ILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPSD  707 (721)
Q Consensus       647 ~Ly-~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  707 (721)
                      +.+ .+|++++|...|++|+++.|+.. +|...|..+...    ..-..+..++|.|+. ||.+
T Consensus       399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~----g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----NEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC----CCHhhHHHHHHHHHhccCCC
Confidence            744 58999999999999999999766 666666555432    234567888888886 4543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=1.7e-18  Score=172.42  Aligned_cols=163  Identities=9%  Similarity=-0.071  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhh----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAG----------------LARLGYIKGHKLWAYEKLNSVISS  444 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~----------------lg~~~~~~G~~~~A~~~~~~aI~~  444 (721)
                      ...+...|..+...|++++|+..|++|++++|  ..+++.                +|.++..+|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999965  456778                999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          445 VTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKLALECLELR  518 (721)
Q Consensus       445 ~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~--~~eAl~~~~kAL~l~P~~~~~~~R  518 (721)
                      +|+++.++.++|..    ++.++|+..|++|++++|+++.+|+++|.+|...|+  ..+|+..|++++..+|....++.+
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  163 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD  163 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            99999999988763    777999999999999999999999999999987764  567788999988544434456788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      |.++..+|++++|+.+|++|++++|+.
T Consensus       164 g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          164 GLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=2.6e-18  Score=180.04  Aligned_cols=207  Identities=10%  Similarity=-0.006  Sum_probs=157.2

Q ss_pred             HHHHHHHHHhcCCCc-HH-HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 004984          434 AYEKLNSVISSVTPL-GW-MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-  510 (721)
Q Consensus       434 A~~~~~~aI~~~~~~-~~-ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-  510 (721)
                      |.+.+.+|-+.-+.. |+ .|+..+.-.+.++|+..|++|              |.++..+|++++|+..|++|+++.+ 
T Consensus         4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~   69 (292)
T 1qqe_A            4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKK   69 (292)
T ss_dssp             HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            445555566655542 22 233210001238888888888              6789999999999999999999853 


Q ss_pred             --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHhhhhcccc
Q 004984          511 --A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSS  583 (721)
Q Consensus       511 --~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~  583 (721)
                        +    ...+.++|.+|..+|++++|+..|++|+++.|+.....+...+...++.+.... .++++|            
T Consensus        70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------  137 (292)
T 1qqe_A           70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------  137 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------
T ss_pred             hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------
Confidence              1    346778999999999999999999999999887532222233444444444442 555555            


Q ss_pred             ccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHh
Q 004984          584 VDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-------RLVYEGWILYD  650 (721)
Q Consensus       584 ~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-------a~~~~G~~Ly~  650 (721)
                            +..|++||++.|..      +.++.++|.++..+|++++|+..|++|+++.|++..       ++.++|.++..
T Consensus       138 ------~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          138 ------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence                  88999999999876      578999999999999999999999999999999875       57899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCHH
Q 004984          651 TSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       651 ~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|++++|+..|+++++++|+|.
T Consensus       212 ~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          212 ATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             TTCHHHHHHHHHGGGCC-----
T ss_pred             cCCHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999986

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=3.3e-19  Score=168.78  Aligned_cols=144  Identities=10%  Similarity=-0.020  Sum_probs=126.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 004984          484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR  562 (721)
Q Consensus       484 ~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~  562 (721)
                      ++|.++...|++++|++.+.+++..+|+ +..++.+|.+|..+|++++|+..|+++++++|++                 
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-----------------   64 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-----------------   64 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence            5789999999999999999999999886 6667889999999999999999888888887776                 


Q ss_pred             HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 004984          563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV  642 (721)
Q Consensus       563 ~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~  642 (721)
                                                               +.+|+++|.++..+|++++|+..|++|++++|+++++++
T Consensus        65 -----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           65 -----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             -----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence                                                     457889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHH-HHHHhcCCCHH-HHHHHHHHhhccC
Q 004984          643 YEGWILYDTSHCEEGLRKA-EESIQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       643 ~~G~~Ly~~G~~deAl~~y-e~Ai~i~~~~~-a~~~~~~~~~~~~  685 (721)
                      ++|.+++.+|++++|...| ++|++++|+.. +|.+|+..+.-.+
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9999999999999988875 99999999988 9999998876544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=1.1e-18  Score=160.74  Aligned_cols=122  Identities=18%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       469 ~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      .++..+||+.+.+|.++|.+++..|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++  
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--   80 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--   80 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence            3567799999999999999999999999999999999999996 8888999999999999999999988888888776  


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 004984          548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL  627 (721)
Q Consensus       548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~  627 (721)
                                                                              +.+|+++|.++..+|++++|+..|
T Consensus        81 --------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~  104 (126)
T 4gco_A           81 --------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAY  104 (126)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                                                    356888999999999999999999


Q ss_pred             HHHHHhCCCChhHHHHHHHHH
Q 004984          628 QLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       628 ~~Al~l~P~~~ea~~~~G~~L  648 (721)
                      ++|++++|++.+++.++|.+|
T Consensus       105 ~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          105 EDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999998774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=7.1e-16  Score=174.40  Aligned_cols=252  Identities=8%  Similarity=-0.042  Sum_probs=189.4

Q ss_pred             ccchHHHHHHHHHHHhccch---hhHhhHHHH-------------HHHhCCHHHHHHHHHH------HHhc-----CCCc
Q 004984          396 RKEYDEAEHLFEAAVNAGHI---YSIAGLARL-------------GYIKGHKLWAYEKLNS------VISS-----VTPL  448 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~~~~---~A~~~lg~~-------------~~~~G~~~~A~~~~~~------aI~~-----~~~~  448 (721)
                      .|++++|...|++||+....   ..+...+..             ....|++..|...+..      +++.     .|..
T Consensus       143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~  222 (530)
T 2ooe_A          143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN  222 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred             HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence            78999999999999986221   112111111             1124566667655544      3332     2221


Q ss_pred             -------HHHHHHH-----hh---cCCh----hHHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCCHH------
Q 004984          449 -------GWMYQER-----SL---YCEG----DKRWEDLDKATALDPTLSYPYMYRASSLMT-------KQNVE------  496 (721)
Q Consensus       449 -------~~ay~~r-----g~---~~~~----~eAl~d~~kAieLdP~~~~ay~~rg~~l~~-------lg~~~------  496 (721)
                             ..+|...     +.   .++.    ++++..|++|+..+|+++.+|+++|..+..       +|+++      
T Consensus       223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~  302 (530)
T 2ooe_A          223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS  302 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence                   1233322     21   1111    377889999999999999999999999986       79987      


Q ss_pred             -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 004984          497 -AALAEINRILG-FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC  573 (721)
Q Consensus       497 -eAl~~~~kAL~-l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~  573 (721)
                       +|+..|++|++ ++|+ ...|...+.++...|++++|...|+++++++|++..     .+....+.+....+++++|  
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~A--  375 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKSG--  375 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-----HHHHHHHHHHHHhcCHHHH--
Confidence             99999999997 8996 788888999999999999999999999999998731     1233333333334445555  


Q ss_pred             HHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                                      ...|++|++..|.....+...+.+ +..+|++++|...|++|++..|++++++.+.|..+..+|
T Consensus       376 ----------------~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          376 ----------------RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             ----------------HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred             ----------------HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence                            778999999999988888777665 346999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 004984          653 HCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       653 ~~deAl~~ye~Ai~i~~~  670 (721)
                      ++++|...|++|+...|.
T Consensus       440 ~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          440 EDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             CHHHHHHHHHHHHHSCCS
T ss_pred             CHhhHHHHHHHHHhccCC
Confidence            999999999999998653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.78  E-value=1.6e-17  Score=185.51  Aligned_cols=278  Identities=15%  Similarity=0.046  Sum_probs=196.3

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHH---HHH
Q 004984          364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-----EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL---WAY  435 (721)
Q Consensus       364 ~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g-----~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~---~A~  435 (721)
                      ....+++++...      ...+++++|.++...+     ++++|+.+|++|++.++..+++.+|.+|...++..   .++
T Consensus        56 ~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~  129 (452)
T 3e4b_A           56 QAEATYRAAADT------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ  129 (452)
T ss_dssp             ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred             HHHHHHHHHHhC------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence            444555554422      4567899999766665     89999999999999999999999999999877644   456


Q ss_pred             HHHHHHHhcCC-----CcHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 004984          436 EKLNSVISSVT-----PLGWMYQERSLYC-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRIL  506 (721)
Q Consensus       436 ~~~~~aI~~~~-----~~~~ay~~rg~~~-~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL  506 (721)
                      .++.++.+...     .+|..|...+.+. ..+++...+.+|...+|+   +++++|.+|...|   ++++|+..|++++
T Consensus       130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            66666665433     2455555554331 114455567777777776   9999999999999   9999999999999


Q ss_pred             hcCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH-H--HhhhhhhHHHHHHhhh
Q 004984          507 GFKLA-LECLELRFCFFLAL----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV-R--EHIDNWTIADCWLQLY  578 (721)
Q Consensus       507 ~l~P~-~~~~~~R~~~~~~l----gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l-~--~~~~~~~~A~~~~~l~  578 (721)
                      +..|. ...+++.|.+|...    +|+++|+..|+++.   |++..      +...++.+ .  ....++++        
T Consensus       207 ~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~------a~~~Lg~~~~~~~~~~d~~~--------  269 (452)
T 3e4b_A          207 SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA------SWVSLAQLLYDFPELGDVEQ--------  269 (452)
T ss_dssp             HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH------HHHHHHHHHHHSGGGCCHHH--------
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH------HHHHHHHHHHhCCCCCCHHH--------
Confidence            99885 66667888888666    79999999999998   77743      33333322 1  11233333        


Q ss_pred             hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh---
Q 004984          579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-----CPEAAMRSLQLARQHAASDHERLVYEGWILYD---  650 (721)
Q Consensus       579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-----~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~---  650 (721)
                                |+..|+++++  ++++.+++++|.++. .|     ++++|+..|++|.   |.++++++++|.++..   
T Consensus       270 ----------A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g  333 (452)
T 3e4b_A          270 ----------MMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL  333 (452)
T ss_dssp             ----------HHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT
T ss_pred             ----------HHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC
Confidence                      4778888875  458888899998887 55     8888999999888   8888999999977766   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Q 004984          651 -TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS  684 (721)
Q Consensus       651 -~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~  684 (721)
                       ..++++|+..|++|.+.. +..|.++.|+.+...
T Consensus       334 ~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G  367 (452)
T 3e4b_A          334 GKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQG  367 (452)
T ss_dssp             SSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhC
Confidence             338899999999888753 334777778777653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=3.3e-18  Score=174.70  Aligned_cols=69  Identities=4%  Similarity=-0.154  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCCC---ChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCC
Q 004984          590 LSVIYQMLESDAP---KGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSH  653 (721)
Q Consensus       590 l~~~~qaL~l~P~---~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~Ly~~G~  653 (721)
                      +..++++++..|.   .+.+++++|.++..+          |++++|+..|+++++..|+++   ++...++.++..+|+
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence            4444444444444   345778888888877          999999999999999999995   556666777766666


Q ss_pred             HHHHH
Q 004984          654 CEEGL  658 (721)
Q Consensus       654 ~deAl  658 (721)
                      ++++.
T Consensus       248 ~~~~~  252 (261)
T 3qky_A          248 LEGDA  252 (261)
T ss_dssp             HHTCT
T ss_pred             hhhhh
Confidence            65543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.78  E-value=1e-17  Score=158.11  Aligned_cols=170  Identities=11%  Similarity=0.087  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      +..|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|++++|+..++++++++|++..      +...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~   81 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------VATV   81 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHH
Confidence            455666777777777777777777777777664 555666677777777777777777777777776632      2333


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                      .+.+.....++++|                  +..+++++..+|.++.+++.+|.++..+|++++|+..++++++..|++
T Consensus        82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            33333334444444                  566777777777778889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +.++.++|.+++.+|++++|+..+++++++.|++.
T Consensus       144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.77  E-value=9.8e-18  Score=180.93  Aligned_cols=236  Identities=9%  Similarity=-0.072  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------  447 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~----~----~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~-------  447 (721)
                      ...++.+|..+...|++++|+..|++|+++    +    ...++..+|.++..+|+++.|+..+.+|+++.+.       
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            345577999999999999999999999986    1    3457889999999999999999999999998443       


Q ss_pred             cHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CC
Q 004984          448 LGWMYQERSL----YCEGDKRWEDLDKATALDPTLS------YPYMYRASSLMTKQNVEAALAEINRILGF-----K-LA  511 (721)
Q Consensus       448 ~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~-P~  511 (721)
                      .+.++.+.|.    .++.++|+..|++|+++.|+..      .+|.++|.++..+|++++|+..|++|+++     + |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            2345555553    2566999999999999977664      59999999999999999999999999994     5 65


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-h
Q 004984          512 -LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-S  589 (721)
Q Consensus       512 -~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-a  589 (721)
                       +..+.++|.++..+|++++|+..|++++++.+......... ....++.+.....+.                +.+. |
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----------------~~~~~a  325 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS-EFEFLKSLYLSGPDE----------------EAIQGF  325 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHTSSCCH----------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcH----------------HHHHHH
Confidence             56778899999999999999999999999965421100001 122233222222221                0011 3


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                      +..++++ ...|....++.++|.++..+|++++|+..+++|+++...
T Consensus       326 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          326 FDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4455554 455666778999999999999999999999999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=2.7e-18  Score=165.77  Aligned_cols=168  Identities=13%  Similarity=0.008  Sum_probs=140.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA  553 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~  553 (721)
                      ||.....+..+|.++...|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++++++| +..+.    
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~----   76 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK----   76 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence            5667788999999999999999999999999999996 78889999999999999999999999999999 64321    


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984          554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH  633 (721)
Q Consensus       554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l  633 (721)
                        ...+.+... ++   .             +..+++..++++++++|+++.+++++|.++..+|++++|+..|++++++
T Consensus        77 --~~~~~~~~~-~~---~-------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           77 --SLIAKLELH-QQ---A-------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             --HHHHHHHHH-HH---H-------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHH-hh---c-------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence              111111000 00   0             1223578999999999999999999999999999999999999999999


Q ss_pred             CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       634 ~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +|+.  +.++.++|.++..+|+.++|+..|++++.
T Consensus       138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9986  55999999999999999999999999986

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.76  E-value=7.9e-19  Score=160.65  Aligned_cols=91  Identities=15%  Similarity=0.228  Sum_probs=83.9

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|+|+|++|+|||.|||++|+||++||.++     ..+|.++  ++++++|+.+++|+|||++..++.++
T Consensus        25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~   97 (116)
T 3fkc_A           25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDL   97 (116)
T ss_dssp             HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred             HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence            3467889999999999999999999999999999999986     5689998  59999999999999999993399999


Q ss_pred             HHHHHHHhhhcChhhHHH
Q 004984          255 LLEILIFANKFCCERLKD  272 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~  272 (721)
                      +.+++.+|++|+++.|++
T Consensus        98 ~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           98 LDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHHHHHHhCccccCc
Confidence            999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=3.2e-18  Score=172.69  Aligned_cols=202  Identities=10%  Similarity=-0.028  Sum_probs=125.6

Q ss_pred             HhhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------CCC
Q 004984          418 IAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DPT  477 (721)
Q Consensus       418 ~~~lg~~~~~~G~~~~A~~~~~~aI~~~--------~~~~~ay~~rg~----~~~~~eAl~d~~kAieL--------dP~  477 (721)
                      +..+|.++..+|++++|+..+.++++..        |..+.++.+.|.    .++.++|+..|++|+++        +|.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  125 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD  125 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            4444555555555555555555544431        223333433332    13335555566666665        577


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 004984          478 LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       478 ~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~  548 (721)
                      ...+|.++|.++..+|++++|+..|++++++        .|. ...+.++|.++..+|++++|+..|++++++.|.....
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  205 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG  205 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            8899999999999999999999999999998        554 5667789999999999999999999999985542100


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA  622 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee  622 (721)
                                                                       ...|....++...+......      ..+.+
T Consensus       206 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T 3edt_B          206 -------------------------------------------------SVNGDNKPIWMHAEEREESKDKRRDSAPYGE  236 (283)
T ss_dssp             -------------------------------------------------SCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred             -------------------------------------------------CcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence                                                             00111122222222222221      22333


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      +...++.+....|+.+.++.++|.++..+|++++|+..|++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            4444444444567777888888888888888888888888888764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.76  E-value=1.9e-17  Score=173.51  Aligned_cols=168  Identities=15%  Similarity=-0.002  Sum_probs=146.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA  553 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~  553 (721)
                      -|+...++..+|..+.+.|++++|+..|+++++++|+ ++.++.+|.++..+|++++|+..|+++++++|++....    
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~----  188 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG----  188 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence            4999999999999999999999999999999999996 78889999999999999999999999999999753211    


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 004984          554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH  633 (721)
Q Consensus       554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l  633 (721)
                        ...+.........+.                  |+..++++++.+|+++++++++|.++..+|++++|++.|+++++.
T Consensus       189 --~~~~~~l~~~~~~~~------------------a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          189 --LVAQIELLXQAADTP------------------EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             --HHHHHHHHHHHTSCH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhhcccCc------------------cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence              111111111112222                  478899999999999999999999999999999999999999999


Q ss_pred             CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       634 ~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +|++  +.++.++|.++..+|+.++|+..|+++++
T Consensus       249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999  89999999999999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=9.2e-17  Score=173.42  Aligned_cols=235  Identities=11%  Similarity=-0.028  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------  447 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------  447 (721)
                      ....++.+|..+...|++++|+..|++|+++.        ...++..+|.++..+|+++.|+..+.+|++..+.      
T Consensus       100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  179 (378)
T 3q15_A          100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI  179 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence            34566789999999999999999999999871        2456888999999999999999999999987432      


Q ss_pred             -cHHHHHHHhh----cCChhHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 004984          448 -LGWMYQERSL----YCEGDKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILG-----FKLA  511 (721)
Q Consensus       448 -~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~------~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~-----l~P~  511 (721)
                       .+.++.+.|.    .++.++|+..|++|+++.+.      .+.++.++|.++..+|++++|+..|++|++     -+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence             2334444442    24457788888887776432      245777788888888888888888888877     5554


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984          512 -LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL  590 (721)
Q Consensus       512 -~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al  590 (721)
                       +..+.++|.++..+|++++|+..+++++++.+...                                            
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------------  295 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS--------------------------------------------  295 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC--------------------------------------------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------------------------------------------
Confidence             45566677778888888888888888877765531                                            


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                               +|.....+...+.++...|.   .++|+..+++ ....|+..+.+..+|.+++.+|++++|+..|++|+++
T Consensus       296 ---------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          296 ---------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             ---------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                     11111122334445555565   6777777766 3445566778889999999999999999999999987


Q ss_pred             CCC
Q 004984          668 KRS  670 (721)
Q Consensus       668 ~~~  670 (721)
                      ...
T Consensus       366 ~~~  368 (378)
T 3q15_A          366 QED  368 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.74  E-value=2.9e-17  Score=187.57  Aligned_cols=161  Identities=12%  Similarity=-0.018  Sum_probs=123.0

Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      +.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++
T Consensus         4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   83 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA   83 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3489999999999999999999999999999999999999999999999996 788889999999999999999998888


Q ss_pred             HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004984          539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN  618 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg  618 (721)
                      ++++|++                                                          +.+++++|.++..+|
T Consensus        84 l~~~p~~----------------------------------------------------------~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           84 SDAAPEH----------------------------------------------------------PGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred             HhcCCCC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence            8888876                                                          234667777888888


Q ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~---G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      ++++|+..|++|++++|++.+++.++|.++..+   |++++|++.|+++++++|+.. +|++.+
T Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            888888888888888888888888888888888   888888888888888887765 665554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.74  E-value=5.9e-18  Score=178.56  Aligned_cols=207  Identities=12%  Similarity=0.024  Sum_probs=164.1

Q ss_pred             hccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhc
Q 004984          395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL  474 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieL  474 (721)
                      ..|++++|.+.+++|.+..... ++.      ..|++++|...|+++       +.+|...|++   ++|+..|.+|+++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~-~~~------~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~   65 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS-FMK------WKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA   65 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC-SSS------CSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc-ccC------CCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence            4678999999999998763321 111      158999999999887       4567777666   9999999999999


Q ss_pred             CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          475 DPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       475 dP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      .|..      +.+|.++|.+|..+|++++|+..|++|+++.+.       ...+.+.|.+|.. |++++|+..|++|+++
T Consensus        66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            8755      668999999999999999999999999998431       2456678888988 9999999999999998


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE  621 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e  621 (721)
                      .|......                                                    ..+.+++++|.++..+|+++
T Consensus       145 ~~~~~~~~----------------------------------------------------~~~~~~~~lg~~~~~~g~~~  172 (307)
T 2ifu_A          145 FENEERLR----------------------------------------------------QAAELIGKASRLLVRQQKFD  172 (307)
T ss_dssp             HHHTTCHH----------------------------------------------------HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCChh----------------------------------------------------HHHHHHHHHHHHHHHcCCHH
Confidence            77531000                                                    01345778888888899999


Q ss_pred             HHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          622 AAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       622 eAl~~~~~Al~l~P~~~------ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|+..|++|+++.|++.      .++.++|.+++.+|++++|+..|++++ ++|+|.
T Consensus       173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            99999999998877654      477888888888899999999999999 888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.73  E-value=2e-16  Score=158.87  Aligned_cols=169  Identities=8%  Similarity=-0.008  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHH-----------
Q 004984          462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFL-----------  523 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~---~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~-----------  523 (721)
                      ++|+..|+++++.+|+++   .+++++|.++..+|++++|+..|+++++++|+ +   .+++.+|.++.           
T Consensus        21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~  100 (225)
T 2yhc_A           21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF  100 (225)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            444444555555555442   45666666666666666666666666666664 2   24455555544           


Q ss_pred             -------hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          524 -------ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       524 -------~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                             .+|++++|+..|+++++..|+...+.      .....+                             ..+...
T Consensus       101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~------~a~~~l-----------------------------~~~~~~  145 (225)
T 2yhc_A          101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT------DATKRL-----------------------------VFLKDR  145 (225)
T ss_dssp             -------CCHHHHHHHHHHHHHHTTCTTCTTHH------HHHHHH-----------------------------HHHHHH
T ss_pred             ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH------HHHHHH-----------------------------HHHHHH
Confidence                   47899999999999999999985321      110000                             001111


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                            .....+.+|.++.+.|++++|+..|+++++..|+++   ++++.+|.+++.+|++++|++.++++....|+.
T Consensus       146 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          146 ------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             ------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                  122446789999999999999999999999999986   789999999999999999999999999888763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.73  E-value=2.7e-16  Score=170.10  Aligned_cols=177  Identities=12%  Similarity=0.034  Sum_probs=147.9

Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLAL-E-DYQAALCDVQ  536 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg-~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-g-d~eeAl~d~~  536 (721)
                      .++|+..++++|.+||++..+|++|+.++..+| .+++++..++++|..+|+ +..|+.|++++..+ + ++++++..++
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            378999999999999999999999999999999 499999999999999996 88899999998888 8 9999999999


Q ss_pred             HHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          537 AILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL  615 (721)
Q Consensus       537 kal~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~  615 (721)
                      ++++++|++.. +.-|.-+...       ...++.+.  ..        .-.+++..++++|+.+|+|..+|++|+.++.
T Consensus       150 k~L~~dpkNy~AW~~R~wvl~~-------l~~~~~~~--~~--------~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          150 GSLLPDPKNYHTWAYLHWLYSH-------FSTLGRIS--EA--------QWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHTSSCTTCHHHHHHHHHHHHH-------HHHTTCCC--HH--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH-------hccccccc--hh--------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999843 2223333332       22233100  00        0012488999999999999999999999999


Q ss_pred             HcCC-------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 004984          616 RLNC-------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC  654 (721)
Q Consensus       616 ~lg~-------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~  654 (721)
                      ++++       .+++++.+++++.++|+|..+++++.+++...|+-
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            9998       78999999999999999999999999999998874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.73  E-value=1.3e-16  Score=150.41  Aligned_cols=166  Identities=14%  Similarity=0.032  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc-
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-  458 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~-  458 (721)
                      ....++.+|..+...|++++|+..|+++++..  ...++..+|.++...|++++|+..+.++++..|+.+.++...|.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35667889999999999999999999999884  456778899999999999999999999999999988888877653 


Q ss_pred             ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       459 ---~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                         ++.++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++.+|+ +..+..+|.++..+|++++|+..
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence               66799999999999999999999999999999999999999999999999996 78888999999999999999999


Q ss_pred             HHHHHhhCCCchh
Q 004984          535 VQAILTLSPDYRM  547 (721)
Q Consensus       535 ~~kal~L~P~~~~  547 (721)
                      |+++++++|++..
T Consensus       167 ~~~~~~~~~~~~~  179 (186)
T 3as5_A          167 FKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHCCCG
T ss_pred             HHHHHHcCCCchh
Confidence            9999999999843

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.73  E-value=6.3e-17  Score=162.53  Aligned_cols=192  Identities=13%  Similarity=0.030  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQE  454 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~---ay~~  454 (721)
                      ..+++++|..+...|+|++|+..|+++++..|.     .+++.+|.+++.+|++++|+..|+++++.+|+...   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            456789999999999999999999999987432     47889999999999999999999999999997653   7777


Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-----------------
Q 004984          455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE-----------------  516 (721)
Q Consensus       455 rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~-----------------  516 (721)
                      +|...            ..+++.....|..++.++.++|++++|+..|+++|+..|+ +....                 
T Consensus        84 ~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~  151 (225)
T 2yhc_A           84 RGLTN------------MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY  151 (225)
T ss_dssp             HHHHH------------HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH------------HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            76541            1122444556777888888889999999999999999886 33321                 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                      .+|.++...|++++|+..|+++++..|+..                                                  
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--------------------------------------------------  181 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQ--------------------------------------------------  181 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSH--------------------------------------------------
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCC--------------------------------------------------
Confidence            233444444555555554444444444431                                                  


Q ss_pred             HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                           ..+++++++|.++.++|++++|+..++++....|++.+-+
T Consensus       182 -----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~  221 (225)
T 2yhc_A          182 -----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH  221 (225)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred             -----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence                 0126789999999999999999999999999999987654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=5.1e-17  Score=149.59  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=105.9

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 004984          503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW  581 (721)
Q Consensus       503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~  581 (721)
                      .|+..+||+ .+.+.++|..+.+.|+|++|+..|+++++++|++                                    
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------   46 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------   46 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Confidence            355668897 6778889999999999999999888888877775                                    


Q ss_pred             ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       582 ~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                                            +.+|+++|.++.++|++++|+..+++|++++|+++++++++|.+++.+|++++|+..|
T Consensus        47 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~  104 (126)
T 4gco_A           47 ----------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAY  104 (126)
T ss_dssp             ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                  4578899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHH-HHHHHHHHh
Q 004984          662 EESIQMKRSFE-AFFLKAYAL  681 (721)
Q Consensus       662 e~Ai~i~~~~~-a~~~~~~~~  681 (721)
                      ++|++++|++. |....+.+|
T Consensus       105 ~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          105 EDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCcCCHHHHHHHHHhc
Confidence            99999999988 777666543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=7.5e-19  Score=188.78  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLAL  525 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~l  525 (721)
                      ++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++||+++|+.                ..+.++|.++..+
T Consensus       130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~  209 (336)
T 1p5q_A          130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL  209 (336)
T ss_dssp             ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            788888999999999999999999999999999999999999999999963                6778899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                      |++++|+.+|+++++++|++                                                          +.
T Consensus       210 g~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~  231 (336)
T 1p5q_A          210 QAFSAAIESCNKALELDSNN----------------------------------------------------------EK  231 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC----------------------------------------------------------HH
T ss_pred             CCHHHHHHHHHHHHHhCCCc----------------------------------------------------------HH
Confidence            99999998888888887775                                                          45


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQ  666 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~  666 (721)
                      +|+++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|++++| -..|++.+.
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999 456777664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.72  E-value=4.5e-17  Score=176.13  Aligned_cols=191  Identities=11%  Similarity=0.027  Sum_probs=164.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchh-
Q 004984          471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRM-  547 (721)
Q Consensus       471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P~~~~-  547 (721)
                      .|...|++..++.++..++...+..++|+..++++|.++|+ ...|+.|+.++..+| ++++++..+++++..+|++.. 
T Consensus        46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a  125 (349)
T 3q7a_A           46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV  125 (349)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred             eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence            45567777889999999999999999999999999999996 888999999999999 599999999999999999843 


Q ss_pred             hhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH-----
Q 004984          548 FEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE-----  621 (721)
Q Consensus       548 ~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e-----  621 (721)
                      ++.|.-+....      .. .+++                  ++..++++|+.+|+|..+|+.|+.++.++|+++     
T Consensus       126 W~hR~wlL~~l------~~~~~~~------------------EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~  181 (349)
T 3q7a_A          126 WHHRLLLLDRI------SPQDPVS------------------EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA  181 (349)
T ss_dssp             HHHHHHHHHHH------CCSCCHH------------------HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHh------cCCChHH------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence            33333222221      01 2222                  488999999999999999999999999999988     


Q ss_pred             ---HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984          622 ---AAMRSLQLARQHAASDHERLVYEGWILYDTSH-------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       622 ---eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~-------~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~  685 (721)
                         ++++.++++++.+|.|..|+.++|+++..+|+       ++++++.++++|.++|+++ ||+.+...+...+
T Consensus       182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence               99999999999999999999999999999998       7999999999999999999 9977666665443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.71  E-value=2.7e-15  Score=160.55  Aligned_cols=302  Identities=14%  Similarity=0.062  Sum_probs=221.7

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhH
Q 004984          349 CLLSEVAMNLDPRSDKTVCFLERLLESAE-T-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSI  418 (721)
Q Consensus       349 ~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~-~-~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~A~  418 (721)
                      .+..++..... +.+....++++++...+ . .+....++..+|.++...|++++|+..|++|+++.+        ..++
T Consensus        18 ~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           18 ALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            44555555433 55667778887665432 2 233456788999999999999999999999998721        2236


Q ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCC-----hHH
Q 004984          419 AGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----SYP  481 (721)
Q Consensus       419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--------~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~-----~~a  481 (721)
                      .++|.++..+|++++|+..+.++++..        |..+.++.++|.    .|+.++|...|++++++.|..     ..+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            789999999999999999999999874        333445554543    255699999999999998864     467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLA---LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA  553 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~-----~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~  553 (721)
                      |.++|.++...|++++|+..+++++++.+.   +..+.     .++.++...|++++|+..++++++..|....+.  ..
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~  254 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--QG  254 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--HH
Confidence            999999999999999999999999987432   11221     244568899999999999999999887642111  11


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHH
Q 004984          554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSL  627 (721)
Q Consensus       554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~  627 (721)
                      .....+.+.....++++|                  +..++++++..+..      ..++..+|.++..+|++++|.+.+
T Consensus       255 ~~~~la~~~~~~g~~~~A------------------~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            223334444444555555                  67788887775542      358889999999999999999999


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004984          628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA  678 (721)
Q Consensus       628 ~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~  678 (721)
                      ++|+++.+..+..     ..+.+.|  +.....+++.+...|..+++--++
T Consensus       317 ~~al~~~~~~g~~-----~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~~  360 (373)
T 1hz4_A          317 LDALKLANRTGFI-----SHFVIEG--EAMAQQLRQLIQLNTLPELEQHRA  360 (373)
T ss_dssp             HHHHHHHHHHCCC-----HHHHTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHhccccHH-----HHHHHcc--HHHHHHHHHHHhCCCCchHHHHHH
Confidence            9999998764322     2244455  677788888899998877766555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.70  E-value=2.1e-17  Score=173.67  Aligned_cols=200  Identities=12%  Similarity=0.064  Sum_probs=146.5

Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-------------
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYR-------ASSLMTKQNVEAALAEINRILGFKLA-LECLEL-------------  517 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~r-------g~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~-------------  517 (721)
                      ++.++|...|.+|++++|+.+++|.+|       +.++..++++.+++..+++++++.|+ ...++.             
T Consensus        20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~   99 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT   99 (282)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred             CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence            344667777777777777777777777       77777777777777777777777664 222222             


Q ss_pred             --------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 004984          518 --------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS  589 (721)
Q Consensus       518 --------R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~a  589 (721)
                              .+.++..+|+|++|.+.|+.++..+|++      . +.+.++.+....++|++|                  
T Consensus       100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------~-~~~~~a~l~~~~~r~~dA------------------  154 (282)
T 4f3v_A          100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------L-VAWMKAVVYGAAERWTDV------------------  154 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------H-HHHHHHHHHHHTTCHHHH------------------
T ss_pred             CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------H-HHHHHHHHHHHcCCHHHH------------------
Confidence                    4456777777777777777777777765      3 445555666666777777                  


Q ss_pred             HHHHHHHHHhC-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          590 LSVIYQMLESD-AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--AS-DHERLVYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       590 l~~~~qaL~l~-P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--P~-~~ea~~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      +..+++++... |. ...+++++|.++..+|++++|++.|++|+.-.  |. ..++++++|++|..+|+.+||...|+++
T Consensus       155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444444332 11 14589999999999999999999999999655  65 7789999999999999999999999999


Q ss_pred             HhcCCCHH-HHHHHHHHhhccCCCC
Q 004984          665 IQMKRSFE-AFFLKAYALADSSQDS  688 (721)
Q Consensus       665 i~i~~~~~-a~~~~~~~~~~~~~~~  688 (721)
                      ++++|+ + ++    -+|.|.+.=|
T Consensus       235 ~a~~P~-~~~~----~aL~~~~~~~  254 (282)
T 4f3v_A          235 QTTHPE-PKVA----AALKDPSYRL  254 (282)
T ss_dssp             HHHSCC-HHHH----HHHHCTTCCC
T ss_pred             HhcCCc-HHHH----HHHhCCCCCC
Confidence            999999 5 33    3456665533

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.69  E-value=2e-16  Score=152.56  Aligned_cols=155  Identities=14%  Similarity=-0.044  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----  458 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----  458 (721)
                      ....+|..+...|++++|+..|++|++.  ++..++.++|.++...|++++|+..++++++..| .+..+...+.+    
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            3567899999999999999999999988  4566889999999999999999999999999999 66554443321    


Q ss_pred             -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       459 -~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                       +...+|+..|++|++++|+++.+++++|.++..+|++++|+..|+++++++|+   +..+.+++.++..+|+.++|+..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence             12256899999999999999999999999999999999999999999999996   34778899999999999999999


Q ss_pred             HHHHHh
Q 004984          535 VQAILT  540 (721)
Q Consensus       535 ~~kal~  540 (721)
                      |++++.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=6.5e-17  Score=154.56  Aligned_cols=69  Identities=10%  Similarity=-0.112  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|+++.|+.+
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            345666666666666666666666666666666666666777776666777777777777766666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=6.8e-16  Score=177.84  Aligned_cols=175  Identities=15%  Similarity=0.149  Sum_probs=151.6

Q ss_pred             HHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          488 SLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALED----------YQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       488 ~l~~lg~-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd----------~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      .++..|. .++|+..++++|+++|+ +.+|+.|+.++..+|+          +++|+..++++++.+|++..      +.
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------aW  110 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------TW  110 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------HH
Confidence            3444554 56889999999999997 8899999999999999          99999999999999999843      33


Q ss_pred             HHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 004984          556 QLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQ  632 (721)
Q Consensus       556 ~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~  632 (721)
                      +.++-+.....  +|++                  ++.+++++|++||.+..+|++||.++.++| .+++|++.+.++++
T Consensus       111 ~hR~w~l~~l~~~~~~~------------------el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~  172 (567)
T 1dce_A          111 HHRCWLLSRLPEPNWAR------------------ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  172 (567)
T ss_dssp             HHHHHHHHTCSSCCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHcccccHHH------------------HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            33333333333  3344                  489999999999999999999999999999 99999999999999


Q ss_pred             hCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 004984          633 HAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ  686 (721)
Q Consensus       633 l~P~~~ea~~~~G~~Ly~~--------------G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~  686 (721)
                      .+|+|..|++++|.++..+              +.+++|++.+++||.++|+.+ ||+.+++++....-
T Consensus       173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            9999999999999999986              668999999999999999999 99999999987553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=4.8e-18  Score=182.48  Aligned_cols=177  Identities=15%  Similarity=0.094  Sum_probs=153.5

Q ss_pred             hHHHHHHHH----HHhcCCCChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984          462 DKRWEDLDK----ATALDPTLSYPYMYRASSLM------------TKQNVEAALAEINRILGFKLA-LECLELRFCFFLA  524 (721)
Q Consensus       462 ~eAl~d~~k----AieLdP~~~~ay~~rg~~l~------------~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~  524 (721)
                      ++|+..+++    ++.++|++  +|.++|....            .++++++|+..|+++++.+|+ ...+..+|.++..
T Consensus        82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~  159 (336)
T 1p5q_A           82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK  159 (336)
T ss_dssp             HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            666666777    77777776  6667776553            788999999999999999996 7888899999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG  604 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~  604 (721)
                      +|++++|+..|++|++++|++....                                           .++..+++|..+
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~-------------------------------------------~~~~~~~~~~~~  196 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFS-------------------------------------------NEEAQKAQALRL  196 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCC-------------------------------------------SHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCC-------------------------------------------hHHHHHHHHHHH
Confidence            9999999999999999999973210                                           123455566678


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. ++++.|.++..
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999988 99998887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=1.5e-16  Score=152.09  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=102.2

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+ +..|+++|.++..+|++++|+..|+++++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            468899999999999999999999999999999999999999995 8888899999999999999999888888877776


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                                                                                +.+|+++|.++.++|++++|+.
T Consensus       104 ----------------------------------------------------------~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A          104 ----------------------------------------------------------YTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence                                                                      4578899999999999999999


Q ss_pred             HHHHHHHhCCCCh
Q 004984          626 SLQLARQHAASDH  638 (721)
Q Consensus       626 ~~~~Al~l~P~~~  638 (721)
                      .|++|+++.|+..
T Consensus       126 ~~~~al~l~~~~~  138 (151)
T 3gyz_A          126 CFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCCHH
Confidence            9999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=6.8e-16  Score=161.28  Aligned_cols=219  Identities=14%  Similarity=0.086  Sum_probs=162.2

Q ss_pred             hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      +++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +..++++|.++..+|++++|+..|++++
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            377788889999999999999999999999999999999999999999996 7888999999999999999999999999


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      +++|++....+... ....  .......|.                        .......|.++.+...++.++  .|+
T Consensus       100 ~l~p~~~~~~~~~~-~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~i~~~l~~l~--~~~  150 (281)
T 2c2l_A          100 SLAKEQRLNFGDDI-PSAL--RIAKKKRWN------------------------SIEERRIHQESELHSYLTRLI--AAE  150 (281)
T ss_dssp             HHHHHTTCCCCSHH-HHHH--HHHHHHHHH------------------------HHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred             HhCccchhhHHHHH-HHHH--HHHHHHHHH------------------------HHHHHHHhhhHHHHHHHHHHH--HHH
Confidence            99998743332211 1111  011111111                        222345677777777777665  799


Q ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCC-------
Q 004984          620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSS-------  689 (721)
Q Consensus       620 ~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~-G~~deAl~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~-------  689 (721)
                      +++|++.+++|++++|++......++-++... +++++|...|+++.+-.+..+  .+|.=.+. .+---||-       
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~-~~~~~dPv~~~~gh~  229 (281)
T 2c2l_A          151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS-FELMREPCITPSGIT  229 (281)
T ss_dssp             HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTT-CSBCSSEEECSSCCE
T ss_pred             HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCc-CCHhcCCeECCCCCE
Confidence            99999999999999999998888888888777 889999999999988644433  33322221 11222333       


Q ss_pred             -chhhHHHHHHHhhc-CCCCcc
Q 004984          690 -CSSTVVSLLEDALK-CPSDRL  709 (721)
Q Consensus       690 -~~~~~~~~~~~~~~-~~~~~~  709 (721)
                       |.+.+...|++--. ||..+-
T Consensus       230 f~~~~i~~~~~~~~~~cP~~~~  251 (281)
T 2c2l_A          230 YDRKDIEEHLQRVGHFNPVTRS  251 (281)
T ss_dssp             EETTHHHHHHHHTCSSCTTTCC
T ss_pred             ECHHHHHHHHHHCCCCCcCCCC
Confidence             24566667766433 998763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=5.4e-15  Score=144.95  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM  559 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~  559 (721)
                      ..++++|.++...|++++|+..|++++  +|++..+.++|.++..+|++++|+..|+++++++|++              
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------   70 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--------------   70 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence            457889999999999999999999996  7788888889999999999999998888888777765              


Q ss_pred             HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 004984          560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-  638 (721)
Q Consensus       560 ~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-  638 (721)
                                                                  +.+|+++|.++..+|++++|+..|++|+++.|++. 
T Consensus        71 --------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  106 (213)
T 1hh8_A           71 --------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL  106 (213)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred             --------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence                                                        34577888899999999999999999999888777 


Q ss_pred             ---------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984          639 ---------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA  682 (721)
Q Consensus       639 ---------------ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~  682 (721)
                                     ++++++|.+++.+|++++|+..|++|+++.|+.. +...+++...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence                           9999999999999999999999999999999875 5555555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=9.4e-15  Score=145.92  Aligned_cols=186  Identities=10%  Similarity=-0.077  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCCh
Q 004984          400 DEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS  479 (721)
Q Consensus       400 ~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~  479 (721)
                      .+|+.+|++|.+.++..+++.+|.++...|++++|+.+|.+++                              +  ++++
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~------------------------------~--~g~~   50 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAA------------------------------A--QGDG   50 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------------H--TTCH
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH------------------------------H--cCCH
Confidence            3688899999999999999999999988887777777665443                              3  3466


Q ss_pred             HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984          480 YPYMYRASSLMTKQ----NVEAALAEINRILGFKL-ALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEG  550 (721)
Q Consensus       480 ~ay~~rg~~l~~lg----~~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~  550 (721)
                      .+++++|.+|.. +    ++++|+..|++|++  + ++.+++++|.+|..    .+|+++|+..|+++++.+|..     
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-----  122 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-----  122 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----
Confidence            777888888887 6    78888888888874  4 36777788888776    788888888888888777641     


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHH
Q 004984          551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRS  626 (721)
Q Consensus       551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~  626 (721)
                                                                         +++.+++++|.++..    .+++++|+..
T Consensus       123 ---------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A          123 ---------------------------------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             ---------------------------------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence                                                               123456777778877    7888999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          627 LQLARQHAASDHERLVYEGWILYDT-S-----HCEEGLRKAEESIQMKRSFEAFFLK  677 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~Ly~~-G-----~~deAl~~ye~Ai~i~~~~~a~~~~  677 (721)
                      |++|+++ |.++++++++|.++... |     ++++|+..|++|++.........+.
T Consensus       152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~  207 (212)
T 3rjv_A          152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD  207 (212)
T ss_dssp             HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999988 77888999999988764 3     8999999999999886655544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.64  E-value=4.1e-15  Score=169.77  Aligned_cols=159  Identities=9%  Similarity=-0.067  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR  504 (721)
Q Consensus       429 G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~k  504 (721)
                      |++++|++.|+++++.+|+.+.+|.++|..    ++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344444444444444444444444433321    3346777778899999999999999999999999999999999999


Q ss_pred             HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984          505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS  583 (721)
Q Consensus       505 AL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~  583 (721)
                      +++++|+ +..+.++|.++..+|++++|+..|+++++++|++                                      
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------------  124 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE--------------------------------------  124 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------
Confidence            9999996 7888899999999999999999888888888876                                      


Q ss_pred             ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984          584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEG  645 (721)
Q Consensus       584 ~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~eeAl~~~~~Al~l~P~~~ea~~~~G  645 (721)
                                          +.+++++|.++..+   |+.++|++.++++++.+|++.+.+..++
T Consensus       125 --------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          125 --------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             --------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             --------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence                                23566778888888   8888888888888888888888877776

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=3.8e-17  Score=182.98  Aligned_cols=188  Identities=12%  Similarity=0.059  Sum_probs=147.2

Q ss_pred             cchHHHHHHHHH----HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984          397 KEYDEAEHLFEA----AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT  472 (721)
Q Consensus       397 g~y~eA~~~f~~----AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi  472 (721)
                      ..+++|+..+++    +|.++|.++|...|...                ..+.|+....|..  .....++|+..|++++
T Consensus       200 ~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~----------------~~ip~~~~l~y~~--~l~~~~~A~~~~~~~~  261 (457)
T 1kt0_A          200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPK----------------FGIEPNAELIYEV--TLKSFEKAKESWEMDT  261 (457)
T ss_dssp             HHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG----------------GTBCTTCCEEEEE--EEEEEECCCCGGGSCH
T ss_pred             hHHHHHHHhCCCCCEEEEEECcccccCCCCCcc----------------cCCCCCCEEEEEh--hhhhcccCcchhhcCH
Confidence            367888887777    77777776554433211                1122211111100  1123378888999999


Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      +++|+.+.+|+++|.++..+|++++|+..|++||+++|+.                .++.++|.++..+|++++|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999999999999963                677889999999999999988888


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                      +|++++|++                                                          +.+|+++|.++..
T Consensus       342 ~al~~~p~~----------------------------------------------------------~~a~~~~g~a~~~  363 (457)
T 1kt0_A          342 KALGLDSAN----------------------------------------------------------EKGLYRRGEAQLL  363 (457)
T ss_dssp             HHHHHSTTC----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHhcCCcc----------------------------------------------------------HHHHHHHHHHHHH
Confidence            888877775                                                          4568899999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                      +|++++|+..|++|++++|++.+++.++|.++..+|++++|...
T Consensus       364 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=3e-15  Score=141.45  Aligned_cols=122  Identities=12%  Similarity=-0.035  Sum_probs=100.9

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .|++|++++|+++.+++++|.++...|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            478899999999999999999999999999999999999999885 7778888888888888888888887777777765


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                                                                                +.+++++|.++..+|++++|+.
T Consensus        89 ----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           89 ----------------------------------------------------------PRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             ----------------------------------------------------------THHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------------------------------------------chHHHHHHHHHHHcCCHHHHHH
Confidence                                                                      3457788888888888888888


Q ss_pred             HHHHHHHhCCCChhHHHHHHH
Q 004984          626 SLQLARQHAASDHERLVYEGW  646 (721)
Q Consensus       626 ~~~~Al~l~P~~~ea~~~~G~  646 (721)
                      .|++|++++|++++....+..
T Consensus       111 ~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A          111 GLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHCcCCCcchHHHHH
Confidence            888888888888776444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.63  E-value=8.2e-15  Score=153.37  Aligned_cols=142  Identities=16%  Similarity=0.074  Sum_probs=74.4

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~-R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      |++|++++|+++.++.++|.++.++|++++|+..++++++.+|++..... .+..+...|+.++|+..|+++++++|++ 
T Consensus       140 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~-  218 (287)
T 3qou_A          140 LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED-  218 (287)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence            34444444444444444444444444444444444444444444222221 2233444444444444444444444444 


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCChHHHH
Q 004984          547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLLLRLNCPEAAM  624 (721)
Q Consensus       547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~--~~~~~~~g~~L~~lg~~eeAl  624 (721)
                           ..+...++.+.....++++|                  +..++++++.+|++  +.++.++|.++..+|+.++|.
T Consensus       219 -----~~~~~~la~~l~~~g~~~~A------------------~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          219 -----AALATQLALQLHQVGRNEEA------------------LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             -----HHHHHHHHHHHHHcccHHHH------------------HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence                 12223333333333333333                  44444445555544  678889999999999999999


Q ss_pred             HHHHHHHHh
Q 004984          625 RSLQLARQH  633 (721)
Q Consensus       625 ~~~~~Al~l  633 (721)
                      ..|++++..
T Consensus       276 ~~~r~al~~  284 (287)
T 3qou_A          276 SXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.62  E-value=1e-15  Score=147.54  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      ++.+.++|+.+..+|+|++|+..|++||+++|+             ..+|.++|.++..+|+|++|+.+|++||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----   86 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----   86 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            467889999999999999999999999999997             127889999999999999999999999876    


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----HHHHHHHHHcCChH
Q 004984          546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLLRLNCPE  621 (721)
Q Consensus       546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~----~~~g~~L~~lg~~e  621 (721)
                                                                     |+++++++|.++.+|    +|+|.+|..+|+++
T Consensus        87 -----------------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e  119 (159)
T 2hr2_A           87 -----------------------------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGA  119 (159)
T ss_dssp             -----------------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----------------------------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence                                                           355677788888888    99999999999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHH
Q 004984          622 AAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       622 eAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                      ||+.+|++|++++|+++.+.--+
T Consensus       120 EAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A          120 EAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999988764433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.62  E-value=4.6e-15  Score=156.37  Aligned_cols=207  Identities=12%  Similarity=0.019  Sum_probs=140.3

Q ss_pred             cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHHHHHhh----cCChhHHHH
Q 004984          397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWMYQERSL----YCEGDKRWE  466 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------~~ay~~rg~----~~~~~eAl~  466 (721)
                      +++++|+..|++|            |.++..+|++++|+..|.+++++++..      +.+|.+.|.    .+++++|+.
T Consensus        30 ~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   97 (307)
T 2ifu_A           30 PDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ   97 (307)
T ss_dssp             CCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred             CCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            5566666655554            334555566666666666665554321      233333332    134477777


Q ss_pred             HHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 004984          467 DLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALC  533 (721)
Q Consensus       467 d~~kAieLdP~~------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~eeAl~  533 (721)
                      .|++|+++.++.      +.+|.++|.+|.. |++++|+..|++|+++.|.       ...+.+.|.++..+|++++|+.
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            777777774432      5789999999999 9999999999999998763       3456778999999999999999


Q ss_pred             HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 004984          534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL  613 (721)
Q Consensus       534 d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~  613 (721)
                      .|++++++.|++...                                                    +..+.+++++|.+
T Consensus       177 ~~~~al~~~~~~~~~----------------------------------------------------~~~~~~~~~~g~~  204 (307)
T 2ifu_A          177 SLQKEKSMYKEMENY----------------------------------------------------PTCYKKCIAQVLV  204 (307)
T ss_dssp             HHHHHHHHHHHTTCH----------------------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCh----------------------------------------------------hHHHHHHHHHHHH
Confidence            999999998775210                                                    0112457889999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHhcCCHHHHHH--HHHHHHhcCCC
Q 004984          614 LLRLNCPEAAMRSLQLARQHAASDHER-----LVYEGWILYDTSHCEEGLR--KAEESIQMKRS  670 (721)
Q Consensus       614 L~~lg~~eeAl~~~~~Al~l~P~~~ea-----~~~~G~~Ly~~G~~deAl~--~ye~Ai~i~~~  670 (721)
                      +..+|++++|+..|++++ ++|+....     +..++.. +..|+.++.-.  .|.....++|.
T Consensus       205 ~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~~~~~~~~~ld~~  266 (307)
T 2ifu_A          205 QLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDND  266 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHHHTTSHHHHTSCHH
T ss_pred             HHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHHHhCchhhhhhHH
Confidence            999999999999999999 99987654     2333332 46676543322  24444444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=2.4e-14  Score=154.49  Aligned_cols=226  Identities=12%  Similarity=0.010  Sum_probs=143.0

Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE  496 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~  496 (721)
                      .++.+|..+..+|++++|+..|.+|+++.+..+.                        +|..+.+|+++|.++..+|+++
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------~~~~a~~~~~lg~~y~~~~~~~  158 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------------------------DIEKAEFHFKVAEAYYHMKQTH  158 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------------------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------------------------hHHHHHHHHHHHHHHHHcCCcH
Confidence            4556788888888888888888877766321100                        1122345566666666666666


Q ss_pred             HHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhh
Q 004984          497 AALAEINRILGFKLA--------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW  568 (721)
Q Consensus       497 eAl~~~~kAL~l~P~--------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~  568 (721)
                      +|+..+++|+++.+.        ..++.+.|.++..+|++++|+..|++|+++.+....-.....+...++.+.....++
T Consensus       159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~  238 (378)
T 3q15_A          159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD  238 (378)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence            666666666655321        123345556666666666666666666665432211112233344444444444444


Q ss_pred             hHHHHHHhhhhccccccccchHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCh
Q 004984          569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-----ASDH  638 (721)
Q Consensus       569 ~~A~~~~~l~~~~~~~dd~~al~~~~qaL~-----l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-----P~~~  638 (721)
                      ++|                  +..++++++     .+|..+.+++++|.++.++|++++|+..+++|+++.     |...
T Consensus       239 ~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  300 (378)
T 3q15_A          239 QMA------------------VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK  300 (378)
T ss_dssp             HHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred             HHH------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            444                  455555555     677788899999999999999999999999999994     4455


Q ss_pred             hHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 004984          639 ERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS  685 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~---~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~  685 (721)
                      ..+..++.++...|+   +++|+..+++. ...|... .+...|..+...+
T Consensus       301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g  350 (378)
T 3q15_A          301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC  350 (378)
T ss_dssp             HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence            567788888888899   99999888873 2333333 6667777766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.61  E-value=3.4e-13  Score=164.54  Aligned_cols=241  Identities=13%  Similarity=-0.012  Sum_probs=149.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHH-HHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984          421 LARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQ-ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA  498 (721)
Q Consensus       421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~-~~ay~-~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA  498 (721)
                      .|.++...|.+++|+..|.++-  .+.. ...++ ..+.+   ++|++.+++     .+.+.+|.++|.++...|+++||
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nl---drAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNL---DRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhH---HHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHH
Confidence            5666677777777777777653  1111 12222 22222   444444333     35567777777777777777777


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH---HHHHHHHhhhhhhHHHHHH
Q 004984          499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ---LHMLVREHIDNWTIADCWL  575 (721)
Q Consensus       499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~---~~~~l~~~~~~~~~A~~~~  575 (721)
                      +..|.||    -+++.+...+.++.++|++++|++.|..|++.+|+......-+-++.   ....+...+.....+ .|.
T Consensus      1125 IdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~ 1199 (1630)
T 1xi4_A         1125 IDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQ 1199 (1630)
T ss_pred             HHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHH
Confidence            7777665    34555666667777777777777777777766654210000000111   111122222222222 344


Q ss_pred             hhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------
Q 004984          576 QLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-------------------  635 (721)
Q Consensus       576 ~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-------------------  635 (721)
                      +++++..+.++++ |...|.+|        ..|.++|.+|.++|++++|++.+++|...++                   
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence            5666666666666 56666664        4788888888888888888888888855554                   


Q ss_pred             ------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 004984          636 ------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS  684 (721)
Q Consensus       636 ------~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~  684 (721)
                            .+++-+..++..+...|+|+||+..+|+++.++|.-. .|-..|.+++-.
T Consensus      1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                  2556667788889999999999999999999998887 565667766554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=3.2e-15  Score=139.13  Aligned_cols=127  Identities=12%  Similarity=-0.073  Sum_probs=101.4

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       466 ~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      ..|.++++++|+++.+++++|.++...|++++|+..|++++.++|+ +..++.+|.++..+|++++|+..|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3578888999999999999999999999999999999999998885 777888888888888888888888777777776


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM  624 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl  624 (721)
                      +                                                          +.+++++|.++..+|++++|+
T Consensus        85 ~----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~  106 (142)
T 2xcb_A           85 E----------------------------------------------------------PRFPFHAAECHLQLGDLDGAE  106 (142)
T ss_dssp             C----------------------------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence            5                                                          345777888888888888888


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984          625 RSLQLARQHAASDHERLVYEGWILYD  650 (721)
Q Consensus       625 ~~~~~Al~l~P~~~ea~~~~G~~Ly~  650 (721)
                      ..|+++++++|++++....+..+.-.
T Consensus       107 ~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A          107 SGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            88888888888888776655554433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=4.6e-17  Score=182.29  Aligned_cols=150  Identities=12%  Similarity=0.024  Sum_probs=128.4

Q ss_pred             hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 004984          491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT  569 (721)
Q Consensus       491 ~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~  569 (721)
                      .++++++|+..|+++++.+|+ ...+..+|.++..+|+|++|+..|++|++++|++..+..                   
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-------------------  306 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-------------------  306 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-------------------
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-------------------
Confidence            678899999999999999996 778889999999999999999999999999999843110                   


Q ss_pred             HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004984          570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY  649 (721)
Q Consensus       570 ~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly  649 (721)
                                              +...+++|....+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++
T Consensus       307 ------------------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~  362 (457)
T 1kt0_A          307 ------------------------KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  362 (457)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence                                    01123344456889999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          650 DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       650 ~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .+|++++|+..|++|++++|++. ++.+.|.++..
T Consensus       363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998 99998887653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.60  E-value=1.1e-15  Score=147.14  Aligned_cols=114  Identities=11%  Similarity=-0.006  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      ...+.++|..+..+|+|++|+..|++||+++|++...                     +                     
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------------~---------------------   48 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------------E---------------------   48 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------------S---------------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------------h---------------------
Confidence            3456778999999999999999999999999997421                     0                     


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCChhHH----HHHHHHHHhcCCHHHHHHH
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASDHERL----VYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~~ea~----~~~G~~Ly~~G~~deAl~~  660 (721)
                          ++...|.++.+|.|+|.++.++|++++|+.+|++|+++       +|+++.++    +++|.+|..+|+++||+..
T Consensus        49 ----a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~  124 (159)
T 2hr2_A           49 ----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  124 (159)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ----hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence                12223445669999999999999999999999999999       99999999    9999999999999999999


Q ss_pred             HHHHHhcCCCH
Q 004984          661 AEESIQMKRSF  671 (721)
Q Consensus       661 ye~Ai~i~~~~  671 (721)
                      |++|++++|+.
T Consensus       125 y~kAlel~p~d  135 (159)
T 2hr2_A          125 FKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHhcCCCc
Confidence            99999999864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=6.4e-15  Score=139.17  Aligned_cols=115  Identities=11%  Similarity=-0.033  Sum_probs=102.6

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      ..|+++++++|+ ...++.+|.++...|++++|+..|+++++++|++                                 
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------   54 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------------------------   54 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------------------------
Confidence            467888888885 6777888889999999998888877777777665                                 


Q ss_pred             hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984          579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL  658 (721)
Q Consensus       579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl  658 (721)
                                               +.+|+++|.++..+|++++|+..|++|++++|+++++++++|.+++.+|++++|+
T Consensus        55 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~  109 (148)
T 2vgx_A           55 -------------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE  109 (148)
T ss_dssp             -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence                                     4678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q 004984          659 RKAEESIQMKRSFE  672 (721)
Q Consensus       659 ~~ye~Ai~i~~~~~  672 (721)
                      ..|++|+++.|+..
T Consensus       110 ~~~~~al~~~p~~~  123 (148)
T 2vgx_A          110 SGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHCcCCC
Confidence            99999999988743

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.59  E-value=3.7e-14  Score=142.76  Aligned_cols=182  Identities=16%  Similarity=0.066  Sum_probs=151.6

Q ss_pred             CchhHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc----------chhhHhhHHHHH
Q 004984          361 RSDKTVCFLERLLESAE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG----------HIYSIAGLARLG  425 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~-----~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~----------~~~A~~~lg~~~  425 (721)
                      ..+.+..+++++++...     +......+++.+|.++...|++++|+..|++|+++.          ...++..+|.++
T Consensus        16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~   95 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY   95 (283)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            34466667777665432     223456788999999999999999999999999772          234678899999


Q ss_pred             HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhh----cCChhHHHHHHHHHHhc--------CCCChHHHHHH
Q 004984          426 YIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DPTLSYPYMYR  485 (721)
Q Consensus       426 ~~~G~~~~A~~~~~~aI~~--------~~~~~~ay~~rg~----~~~~~eAl~d~~kAieL--------dP~~~~ay~~r  485 (721)
                      ..+|++++|+..+.++++.        +|..+.++.++|.    .++.++|+..|++|+++        +|..+.++.++
T Consensus        96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  175 (283)
T 3edt_B           96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL  175 (283)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999998        4666777777765    36669999999999999        88899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC-------------------------------------------------CC-HHHH
Q 004984          486 ASSLMTKQNVEAALAEINRILGFK-------------------------------------------------LA-LECL  515 (721)
Q Consensus       486 g~~l~~lg~~~eAl~~~~kAL~l~-------------------------------------------------P~-~~~~  515 (721)
                      |.++..+|++++|+..|++++++.                                                 |. ...+
T Consensus       176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (283)
T 3edt_B          176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL  255 (283)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            999999999999999999999862                                                 22 3456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          516 ELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       516 ~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      ..+|.++..+|++++|+..|++++++.
T Consensus       256 ~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          256 RSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            778899999999999999999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=7.6e-14  Score=123.83  Aligned_cols=133  Identities=13%  Similarity=0.135  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH  558 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~  558 (721)
                      .+|+.+|.++...|++++|+..|+++++.+|+ ...+...+.++...|++++|+..|+++++++|++             
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------   68 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------------   68 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence            57888899999999999999999999888885 6667778888888888888888777777766654             


Q ss_pred             HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       559 ~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                                                                   +.+++++|.++...|++++|+..++++++..|++.
T Consensus        69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence                                                         34567788889999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      .++..+|.+++.+|++++|+..+++++.++|+
T Consensus       104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=2.6e-14  Score=140.02  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG  461 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~  461 (721)
                      ..+.++++|..+...|++++|+..|++|+.. ...++.++|.++..+|++++|+.                         
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~-------------------------   58 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEK-------------------------   58 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence            4567788899999999999999999988744 45567777777777777665554                         


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----------------HHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----------------ECLELRFCFFLA  524 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~----------------~~~~~R~~~~~~  524 (721)
                           .|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ .                ..++++|.++..
T Consensus        59 -----~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           59 -----AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             -----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence                 556677777777778888888888888888888888888886663 3                566777888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCch
Q 004984          525 LEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      +|++++|+..|+++++++|++.
T Consensus       134 ~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          134 KEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccCHHHHHHHHHHHHHcCcccc
Confidence            8888888888888888888763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=1.2e-14  Score=152.64  Aligned_cols=204  Identities=10%  Similarity=0.006  Sum_probs=123.0

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhH-------HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGL-------ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL  457 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~l-------g~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~  457 (721)
                      +..|+-+ .-+++.+|.+.|.+|++++|  .++|.++       +.++...++..+++..+.                  
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~------------------   71 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS------------------   71 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH------------------
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH------------------
Confidence            4444444 46677777777777766643  4455555       445554444444444444                  


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHH---------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMY---------------------RASSLMTKQNVEAALAEINRILGFKLALECLE  516 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~---------------------rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~  516 (721)
                                  +++++.|+...++++                     .|.+|.+.|+|++|.+.|+.++...|+....+
T Consensus        72 ------------~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~  139 (282)
T 4f3v_A           72 ------------GSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAW  139 (282)
T ss_dssp             ------------HTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHH
T ss_pred             ------------HHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHH
Confidence                        444444444444333                     45566666666666666666666556422555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 004984          517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM  596 (721)
Q Consensus       517 ~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qa  596 (721)
                      .++.++.+.|||++|+..|+++.+..+++.    ...+...++.+...+.++++|                  +..++++
T Consensus       140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~----~~~a~~~LG~al~~LG~~~eA------------------l~~l~~a  197 (282)
T 4f3v_A          140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFL----AGAAGVAHGVAAANLALFTEA------------------ERRLTEA  197 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----HHHHHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhhccCCccc----HHHHHHHHHHHHHHCCCHHHH------------------HHHHHHH
Confidence            566666666666666666665554422210    012344444444455555555                  5556666


Q ss_pred             HHhC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 004984          597 LESD--AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       597 L~l~--P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                      +...  |. .+++++++|.+|.++|+.++|...|+++++.+|+ +.+...+
T Consensus       198 ~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          198 NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            5433  44 5678999999999999999999999999999999 7765443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.56  E-value=1.8e-12  Score=158.24  Aligned_cols=254  Identities=9%  Similarity=0.001  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHh
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERS  456 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~~ay~~rg  456 (721)
                      ...|+++|.++...|++++|+..|.+|   +..+++..+|.++.+.|++++|++.|..|++..++      .|.+|.+.+
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence            567899999999999999999999886   77888999999999999999999999999977644      677787775


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004984          457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       457 ~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      ++   + ++++|-     +..+...|.+.|..+.++|+|++|+..|++|       ..|...+.++.++|++++|+..++
T Consensus      1182 rl---e-ele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1182 RL---A-ELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             CH---H-HHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence            54   5 466662     3445567889999999999999999999997       356667889999999999999999


Q ss_pred             HHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 004984          537 AILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL  612 (721)
Q Consensus       537 kal~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~  612 (721)
                      +|...++=...   ....+.....+..........+..+-....|+   +.+.++ ++..++++|.++|.+...+..+|.
T Consensus      1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe---~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A         1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ---DRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred             HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence            99554331100   00000000000000111122222222223343   345555 688999999999999999988888


Q ss_pred             HHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHH
Q 004984          613 LLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGL  658 (721)
Q Consensus       613 ~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~Ly~~G~~deAl  658 (721)
                      ++.+  -++..|+++.|...+++.|     .+++.+.....++..-|+++.|+
T Consensus      1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            8776  6778899999999999988     88888888888888899999999

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=1.5e-14  Score=134.57  Aligned_cols=115  Identities=10%  Similarity=-0.044  Sum_probs=100.0

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 004984          500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY  578 (721)
Q Consensus       500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~  578 (721)
                      ..|+++++++|+ ...++.+|..+...|++++|+..|+++++++|++                                 
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------   51 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------------------------   51 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence            567888888885 6777888888999999999888887777777765                                 


Q ss_pred             hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 004984          579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL  658 (721)
Q Consensus       579 ~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl  658 (721)
                                               +.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus        52 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  106 (142)
T 2xcb_A           52 -------------------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE  106 (142)
T ss_dssp             -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence                                     4568889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q 004984          659 RKAEESIQMKRSFE  672 (721)
Q Consensus       659 ~~ye~Ai~i~~~~~  672 (721)
                      ..|++++++.|+..
T Consensus       107 ~~~~~al~~~p~~~  120 (142)
T 2xcb_A          107 SGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHHTCG
T ss_pred             HHHHHHHHhCCCCc
Confidence            99999999998655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=1.2e-13  Score=128.76  Aligned_cols=132  Identities=16%  Similarity=0.141  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      +..|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++            
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------   80 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------   80 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence            467889999999999999999999999999995 7888889999999999999988888888777765            


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                                                                    +.+++++|.++..+|++++|+..++++++++|++
T Consensus        81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence                                                          3467889999999999999999999999999999


Q ss_pred             hhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcC
Q 004984          638 HERLVYEGWI--LYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       638 ~ea~~~~G~~--Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      .+++.+++.+  +..+|++++|+..++++..+-
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            9999666555  888999999999999887653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.9e-14  Score=126.34  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=81.1

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |..+..|.++|..+...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++         
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------   71 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------   71 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence            445667777777777777777777777777777774 6666777777777777777777666666666654         


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984          555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA  634 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~  634 (721)
                                                                       +.+|+++|.++..+|++++|+..|+++++++
T Consensus        72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence                                                             2346667777777777777777777777777


Q ss_pred             ------CCChhHHHHHHHHHH
Q 004984          635 ------ASDHERLVYEGWILY  649 (721)
Q Consensus       635 ------P~~~ea~~~~G~~Ly  649 (721)
                            |++.+++..++.+..
T Consensus       103 p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A          103 AEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHTTTTHHHHHHHHHHHHH
T ss_pred             cccCCchhHHHHHHHHHHHHH
Confidence                  777766666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=7.6e-14  Score=132.40  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=97.8

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV  552 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~  552 (721)
                      -+|..+.+|+.+|.+++..|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++       
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------   78 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-------   78 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Confidence            35667788888888888889999999999999888885 7778888888888888888888887777777765       


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                                                                         +.+|+++|.++..+|++++|+..|+++++
T Consensus        79 ---------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           79 ---------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                                                               34577888888888888888888888888


Q ss_pred             hCCCChhHHHHHHHHHHh
Q 004984          633 HAASDHERLVYEGWILYD  650 (721)
Q Consensus       633 l~P~~~ea~~~~G~~Ly~  650 (721)
                      ++|++.++++++|+....
T Consensus       108 ~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A          108 AEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHSSSCCHHHHHHHHHHH
T ss_pred             hCCCchHHHHHHHHHHHH
Confidence            888888888888876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.53  E-value=1.1e-14  Score=142.59  Aligned_cols=168  Identities=10%  Similarity=0.079  Sum_probs=114.4

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H--------------
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L--------------  512 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~--------------  512 (721)
                      .++.....|.+   ++|.+.++...+-.|..+..+..+|.++...|++++|+..|++++++.|+ +              
T Consensus        10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A           10 HSSGRENLYFQ---GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhhc---cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            34444444444   55555556566666667788889999999999999999999999998885 4              


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984          513 --ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL  590 (721)
Q Consensus       513 --~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al  590 (721)
                        ..+.++|.++..+|++++|+.+|+++++++|++                                             
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------------------  121 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------------------------------------  121 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------------------------------------
Confidence              566778888888888888888777777776665                                             


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                                   +.+++++|.++..+|++++|+..|++|++++|++.+++..+|.++..+|+.+++...         .
T Consensus       122 -------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~---------~  179 (198)
T 2fbn_A          122 -------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL---------T  179 (198)
T ss_dssp             -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             -------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence                         456788999999999999999999999999999999999999999998887776622         3


Q ss_pred             HHHHHHHHHHhhccC
Q 004984          671 FEAFFLKAYALADSS  685 (721)
Q Consensus       671 ~~a~~~~~~~~~~~~  685 (721)
                      |..+|.+|-.+.|-.
T Consensus       180 ~~~~f~~~~~~~~~~  194 (198)
T 2fbn_A          180 FGGMFDKGPLYEEKK  194 (198)
T ss_dssp             ---------------
T ss_pred             HHHHhcccchhhccc
Confidence            445666666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.52  E-value=7.7e-14  Score=145.64  Aligned_cols=168  Identities=11%  Similarity=0.065  Sum_probs=140.7

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |+.+.+++.+|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++.      .+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~   74 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV------KA   74 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH------HH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HH
Confidence            778999999999999999999999999999999995 88889999999999999999999999999999984      35


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984          555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA  634 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~  634 (721)
                      ...++.+.....++++|                  +..+.++++++|+++..+........   +...+...........
T Consensus        75 ~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  133 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEA------------------IANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRI  133 (281)
T ss_dssp             HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            55556666666677777                  78999999999988655544333333   3344556666777789


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       635 P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      |.+++....+|-.+  .|++++|+..|++|++++|+..
T Consensus       134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A          134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred             hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence            99999999998876  7999999999999999999854

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.50  E-value=7e-13  Score=117.52  Aligned_cols=125  Identities=18%  Similarity=0.121  Sum_probs=90.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV  495 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~  495 (721)
                      .+|.++...|++++|+..+.++++..|+...++...+.    .++.++|+..|+++++++|+++.++.++|.++...|++
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   85 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY   85 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence            33344444444444444444444444433333333221    13336666777788888888889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      ++|+..++++++..|+ ...+..++.++...|++++|+..|+++++++|+
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999985 777788899999999999999999999999986

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=5.1e-13  Score=133.28  Aligned_cols=161  Identities=13%  Similarity=-0.089  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhC----CHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKG----HKLWAYEKLNSVISSVTPLGWMYQERSL  457 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G----~~~~A~~~~~~aI~~~~~~~~ay~~rg~  457 (721)
                      +..+++++|..+...+++++|+.+|++|++.++..+++.+|.++.. |    ++++|+.+|.++++.  ..+.++++.|.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~~Lg~   93 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEIVLAR   93 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999988 7    999999999999764  56777777764


Q ss_pred             c--------CChhHHHHHHHHHHhcCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004984          458 Y--------CEGDKRWEDLDKATALDP--TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFL  523 (721)
Q Consensus       458 ~--------~~~~eAl~d~~kAieLdP--~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~  523 (721)
                      +        .+.++|+..|++|++.+|  +++.+++++|.+|..    .+++++|+..|++|+++.+++.+.+++|.+|.
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            2        355999999999999999  569999999999999    99999999999999998446778889998887


Q ss_pred             hc-C-----CHHHHHHHHHHHHhhCCCc
Q 004984          524 AL-E-----DYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       524 ~l-g-----d~eeAl~d~~kal~L~P~~  545 (721)
                      .. |     |+++|+..|++|++..+..
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            54 3     9999999999999997654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=3.5e-14  Score=130.39  Aligned_cols=113  Identities=6%  Similarity=0.031  Sum_probs=95.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      +.+.++.++|+++...|++++|+..|++||+++|+ +..+.++|.+|..+|++++|+.+|+++++++|++...+      
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------   79 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY------   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh------
Confidence            44678999999999999999999999999999996 88889999999999999999999999999999873211      


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                      .                                             .-+.+|+++|.++..+|++++|+..|++|++..|
T Consensus        80 ~---------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           80 K---------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             H---------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             H---------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            0                                             0124577888888888999999999999888888


Q ss_pred             CChhHH
Q 004984          636 SDHERL  641 (721)
Q Consensus       636 ~~~ea~  641 (721)
                      + ++..
T Consensus       115 ~-~~~~  119 (127)
T 4gcn_A          115 D-PELV  119 (127)
T ss_dssp             C-HHHH
T ss_pred             C-HHHH
Confidence            5 4443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=4.3e-14  Score=129.77  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=84.0

Q ss_pred             CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-------HHHHHH
Q 004984          447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------ECLELR  518 (721)
Q Consensus       447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~-------~~~~~R  518 (721)
                      ++|..++.+|++   ++|+..|++||+++|+++.+|.++|.+|..+|++++|+.+|++||+++|+ .       ..+..+
T Consensus        13 ~lG~~~~~~~~~---~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           13 DLGNAAYKQKDF---EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            355666666555   78888889999999999999999999999999999999999999999884 2       356678


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      |.++..+|++++|+..|+++++++|+.
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            999999999999999999999999984

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.49  E-value=8.2e-13  Score=137.61  Aligned_cols=179  Identities=9%  Similarity=-0.015  Sum_probs=132.4

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      +|+....+...+..+...|++++|+..++++++..|. ..      .++..|.++...|++++|+..|++++++.+....
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            4455556677777888888888888888888877664 21      1234566777778888888888888877665433


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH---HhCCCCh----hHHHHHHHHHHHcCCh
Q 004984          548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAPKG----VLYFRQSLLLLRLNCP  620 (721)
Q Consensus       548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL---~l~P~~~----~~~~~~g~~L~~lg~~  620 (721)
                      ..+...+....+.+.....++++|                  +..+++|+   +..|.+.    .+++++|.++..+|++
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y  212 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY  212 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence            333344555555555555555555                  66777777   5556543    6899999999999999


Q ss_pred             HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCH
Q 004984          621 EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSF  671 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~------~~ea~~~~G~~Ly~~G~~deA-l~~ye~Ai~i~~~~  671 (721)
                      ++|+..+++|+++.++      -+.+++++|.++..+|++++| ...|++|+.+...+
T Consensus       213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999764      278999999999999999999 77799999875433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=3.9e-13  Score=120.28  Aligned_cols=122  Identities=17%  Similarity=0.147  Sum_probs=106.8

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV  552 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~  552 (721)
                      -.|..+.+|+.+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++       
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------   83 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------   83 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------
Confidence            35777889999999999999999999999999999995 7888889999999999999988888887777765       


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004984          553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ  632 (721)
Q Consensus       553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~  632 (721)
                                                                         +.+++++|.++..+|++++|+..++++++
T Consensus        84 ---------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           84 ---------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                                                               34677888999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHhcCC
Q 004984          633 HAASDHERLVYEGWILYDTSH  653 (721)
Q Consensus       633 l~P~~~ea~~~~G~~Ly~~G~  653 (721)
                      ++|++.+++..+|.++..+|+
T Consensus       113 ~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          113 LDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HCGGGTHHHHHHHHHHHHHTC
T ss_pred             hCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999988775

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=2.7e-13  Score=120.31  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=109.5

Q ss_pred             HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 004984          472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG  550 (721)
Q Consensus       472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~  550 (721)
                      .+.+|+.+.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----   79 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-----   79 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence            4567778889999999999999999999999999999995 7778889999999999999988888887777765     


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984          551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA  630 (721)
Q Consensus       551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A  630 (721)
                                                                           +.+++++|.++..+|++++|+..++++
T Consensus        80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA  106 (131)
T ss_dssp             -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                                                                 345778899999999999999999999


Q ss_pred             HHhCCCChhHHHHHHHHHHhcCCHH
Q 004984          631 RQHAASDHERLVYEGWILYDTSHCE  655 (721)
Q Consensus       631 l~l~P~~~ea~~~~G~~Ly~~G~~d  655 (721)
                      ++++|++..++..+|.++..+|+++
T Consensus       107 ~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          107 LELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999998863

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=1.4e-13  Score=131.63  Aligned_cols=82  Identities=10%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDY--QAALCDVQA  537 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~--eeAl~d~~k  537 (721)
                      ++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++  ++|+..|++
T Consensus        27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~  106 (177)
T 2e2e_A           27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK  106 (177)
T ss_dssp             CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            66666677777777777777777777777666666666666666666663 4555555555 4455554  544444444


Q ss_pred             HHhhCC
Q 004984          538 ILTLSP  543 (721)
Q Consensus       538 al~L~P  543 (721)
                      +++++|
T Consensus       107 al~~~p  112 (177)
T 2e2e_A          107 ALALDS  112 (177)
T ss_dssp             HHHHCT
T ss_pred             HHHhCC
Confidence            443333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=3.8e-13  Score=128.63  Aligned_cols=126  Identities=13%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984          489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN  567 (721)
Q Consensus       489 l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~  567 (721)
                      +...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++.                     
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------------   78 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------------   78 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence            45678899999999999999995 78888899999999999999999999999999872                     


Q ss_pred             hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCChhHHHHH
Q 004984          568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYE  644 (721)
Q Consensus       568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~--eeAl~~~~~Al~l~P~~~ea~~~~  644 (721)
                                                           .+++++|.+ +...|++  ++|+..++++++++|++..+++++
T Consensus        79 -------------------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  121 (177)
T 2e2e_A           79 -------------------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL  121 (177)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence                                                 234455555 4566666  667777777777777777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          645 GWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       645 G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      |.+++.+|++++|+..|+++++++|+..
T Consensus       122 a~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          122 ASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            7777777777777777777777766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.48  E-value=1.6e-13  Score=130.13  Aligned_cols=110  Identities=9%  Similarity=0.017  Sum_probs=97.4

Q ss_pred             HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      |..++..+...+++. |+..|+++++++|.++.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   93 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA   93 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            333333333334444 4889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          653 HCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       653 ~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      ++++|+..|+++++++|++. +++.+|++.+-
T Consensus        94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999998 99999988653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=1.1e-14  Score=164.00  Aligned_cols=138  Identities=17%  Similarity=0.176  Sum_probs=119.7

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      +.+.+|.++|.++..+|++++|+..|++||+++|+ ...+.++|.++..+|++++|+.+|++|++++|++          
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----------   73 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----------   73 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence            34567788899999999999999999999999996 7888899999999999999999888888887776          


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                                                                      +.+|+++|.++..+|++++|+..|++|++++|
T Consensus        74 ------------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           74 ------------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             ------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                                                            34678899999999999999999999999999


Q ss_pred             CChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCHH
Q 004984          636 SDHERLVYEGWI--LYDTSHCEEGLRKAE-----------ESIQMKRSFE  672 (721)
Q Consensus       636 ~~~ea~~~~G~~--Ly~~G~~deAl~~ye-----------~Ai~i~~~~~  672 (721)
                      ++.+++.++|.+  +..+|++++|++.|+           ++++++|++.
T Consensus       106 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          106 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            999999999999  999999999999999           8999888865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=4.7e-13  Score=120.84  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+.+|+++++
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            77788889999999999999999999999999999999999999999996 78889999999999999999999999999


Q ss_pred             hC
Q 004984          541 LS  542 (721)
Q Consensus       541 L~  542 (721)
                      ++
T Consensus       101 ~~  102 (126)
T 3upv_A          101 KD  102 (126)
T ss_dssp             HH
T ss_pred             hC
Confidence            99

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.46  E-value=2e-12  Score=134.73  Aligned_cols=167  Identities=9%  Similarity=-0.015  Sum_probs=112.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH-----H-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          485 RASSLMTKQNVEAALAEINRILGFKLA-LEC-----L-ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       485 rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~-----~-~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      .+..+...|++++|+..+++++...+. ++.     + ...|.++...|++++|+..|++|+++.+......+...+...
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            455566666666666666666665543 221     1 124555556666666666666666655443222223333444


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH-------hCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-------SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA  630 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~-------l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A  630 (721)
                      .+.+.....++++|                  +..++++|+       ..|..+.+++++|.++.++|++++|+..+++|
T Consensus       161 lg~~y~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          161 IANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44444444444444                  455555552       23444568999999999999999999999999


Q ss_pred             HHhCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004984          631 RQHAASD------HERLVYEGWILYDTS-HCEEGLRKAEESIQMKR  669 (721)
Q Consensus       631 l~l~P~~------~ea~~~~G~~Ly~~G-~~deAl~~ye~Ai~i~~  669 (721)
                      +++.+..      +.+++++|.+++.+| ++++|+..|++|+.+-.
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9998766      889999999999999 57999999999998743

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.45  E-value=1.3e-13  Score=132.64  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC----
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV----------EAALAEINRILGFKLA-LECLELRFCFFLALE----  526 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~----------~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg----  526 (721)
                      ++|+..|++|++++|+++.+|+++|.++.+++++          ++|+..|++||+++|+ .++++++|.+|..+|    
T Consensus        19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P   98 (158)
T 1zu2_A           19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP   98 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence            9999999999999999999999999999999886          5999999999999997 889999999998875    


Q ss_pred             -------CHHHHHHHHHHHHhhCCCc
Q 004984          527 -------DYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       527 -------d~eeAl~d~~kal~L~P~~  545 (721)
                             ++++|+..|++|++++|++
T Consensus        99 ~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           99 DETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             chhhhhccHHHHHHHHHHHHHhCCCC
Confidence                   8999999999999999998

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.45  E-value=4.1e-13  Score=127.06  Aligned_cols=67  Identities=10%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGF------------------KLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l------------------~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      +..+..+|..++..|++++|+..|++||.+                  +|. ...+.++|.++..+|++++|+.+|++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467788888888888888888888888887                  343 3445555566666666665555555555


Q ss_pred             hhCCCc
Q 004984          540 TLSPDY  545 (721)
Q Consensus       540 ~L~P~~  545 (721)
                      +++|++
T Consensus        91 ~~~p~~   96 (162)
T 3rkv_A           91 KREETN   96 (162)
T ss_dssp             HHSTTC
T ss_pred             hcCCcc
Confidence            555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.44  E-value=4.1e-13  Score=127.07  Aligned_cols=139  Identities=13%  Similarity=0.056  Sum_probs=104.2

Q ss_pred             hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984          415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN  494 (721)
Q Consensus       415 ~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~  494 (721)
                      ..++...|..++..|++++|+..|+++|...+....    ....  .++      ...+++|.++.+|.++|.++..+|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~--~~~------~~~~~~~~~~~~~~nla~~~~~~~~   78 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKP--GEP------EWVELDRKNIPLYANMSQCYLNIGD   78 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCT--TSH------HHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCC--CHH------HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            455677888888888888888888888876321100    0000  000      0134578889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984          495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI  570 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~  570 (721)
                      +++|+.++++||+++|+ +..++.+|.++..+|++++|+.+|+++++++|++..     .+...+..+....+...+
T Consensus        79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-----~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS-----VVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence            99999999999999996 888999999999999999999999999999999842     234444444444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=5.5e-13  Score=121.40  Aligned_cols=79  Identities=10%  Similarity=0.015  Sum_probs=65.7

Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++.
T Consensus        41 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           41 EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            3333444444678899999999999999999999999999999999999999999999999999999999999999874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.44  E-value=1.1e-12  Score=119.08  Aligned_cols=121  Identities=15%  Similarity=0.058  Sum_probs=95.3

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                      ..+|..+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++      
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------   76 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   76 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence            467888888999999999999999999999999988886 7778888888888888888888777777777665      


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                                                                          +.+|+++|.++..+|++++|+..+++|+
T Consensus        77 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           77 ----------------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                                                                3457788888888888888888888888


Q ss_pred             HhCCC-----ChhHHHHHHHHHHhc
Q 004984          632 QHAAS-----DHERLVYEGWILYDT  651 (721)
Q Consensus       632 ~l~P~-----~~ea~~~~G~~Ly~~  651 (721)
                      +++|+     +.++...++.+....
T Consensus       105 ~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B          105 SLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHChhHHHHHHHHHHHHHHHHHHHH
Confidence            88888     666665555554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.43  E-value=6.4e-14  Score=155.27  Aligned_cols=256  Identities=11%  Similarity=0.013  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHhh
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSL  457 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~------~~~~~~ay~~rg~  457 (721)
                      ..|.++|.++...|++++|++.|.++   +...++...+..+...|++++|+..+..+++.      .+.++.+|...|+
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~  109 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR  109 (449)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCC
Confidence            46667777777777777777777654   33446666777777777777777777666643      3334444444433


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                      +   .++...|+     .|+. .+|.++|..+.+.|++++|+..|+++       ..+..++.++..+|++++|+..|++
T Consensus       110 l---~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~K  173 (449)
T 1b89_A          110 L---AELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARK  173 (449)
T ss_dssp             H---HHHTTTTT-----CC-----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             H---HHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence            3   44333332     1322 35666666666666666666666554       2234445555666666666666665


Q ss_pred             HHhhCCCchhhhhhHHHHHHHHHHH-------HhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 004984          538 ILTLSPDYRMFEGRVAASQLHMLVR-------EHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR  609 (721)
Q Consensus       538 al~L~P~~~~~~~~~~a~~~~~~l~-------~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~  609 (721)
                      +.  +|.-  +..-..+....+..+       ......+...-...+|.+   .+.+. ++..++++|.++|.+...+..
T Consensus       174 A~--~~~~--Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek---~G~~eEai~lLe~aL~le~ah~~~fte  246 (449)
T 1b89_A          174 AN--STRT--WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD---RGYFEELITMLEAALGLERAHMGMFTE  246 (449)
T ss_dssp             HT--CHHH--HHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             cC--Cchh--HHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH---CCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            51  2210  000000000000000       000111111111223322   23333 488999999999999999999


Q ss_pred             HHHHHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          610 QSLLLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       610 ~g~~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      +|.++.+  .++..|+++.|...+++.|     .++..+-.+..+++.-|+||.|+...-+..
T Consensus       247 l~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          247 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            9999887  7788899999999999999     999999999999999999999987655544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.43  E-value=2.1e-12  Score=120.37  Aligned_cols=134  Identities=14%  Similarity=0.112  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY  458 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~  458 (721)
                      .....++.+|..+...|++++|+..|++|++..+  ..++.++|.++...|++                           
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~---------------------------   63 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------------   63 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------------
Confidence            3455666677777777777777777777766643  33444455555554444                           


Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDV  535 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~eeAl~d~  535 (721)
                         ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+..  ++..+...|++++|+..+
T Consensus        64 ---~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~  140 (166)
T 1a17_A           64 ---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  140 (166)
T ss_dssp             ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence               56666778888889999999999999999999999999999999999996 555533  455688899999999999


Q ss_pred             HHHHhhCCC
Q 004984          536 QAILTLSPD  544 (721)
Q Consensus       536 ~kal~L~P~  544 (721)
                      +++.++-+.
T Consensus       141 ~~~~~~~~~  149 (166)
T 1a17_A          141 EHKRSVVDS  149 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             cchHHHhcc
Confidence            998776443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.43  E-value=4.4e-14  Score=151.79  Aligned_cols=140  Identities=12%  Similarity=0.056  Sum_probs=72.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHH
Q 004984          475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE------------------CLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~------------------~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      .|+.+..|+++|.++...|++++|+..|++||++.|+..                  ++.++|.++..+|++++|+.   
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~---  251 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG---  251 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence            344456778888888888888888888888888887532                  33444444444444444444   


Q ss_pred             HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004984          537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR  616 (721)
Q Consensus       537 kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~  616 (721)
                                                                             .++++|+++|.++.+|+++|.++..
T Consensus       252 -------------------------------------------------------~~~~al~~~p~~~~a~~~lg~a~~~  276 (338)
T 2if4_A          252 -------------------------------------------------------HCNIVLTEEEKNPKALFRRGKAKAE  276 (338)
T ss_dssp             -------------------------------------------------------HHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             -------------------------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                                                   4555555555556778999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          617 LNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|++++|+..|++|++++|++.+++.+++.+ ....++.+++...|.+++.+.|+..
T Consensus       277 ~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             TTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            9999999999999999999999999999998 5556888899999999999998764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.42  E-value=1.1e-12  Score=126.61  Aligned_cols=157  Identities=11%  Similarity=-0.052  Sum_probs=124.9

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                      ++|...++......+..+.++.++|.++...|++++|+..|++++++      .|. ...+.++|.++..+|++++|+..
T Consensus         9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   88 (203)
T 3gw4_A            9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC   88 (203)
T ss_dssp             HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            67766444444433377899999999999999999999999999984      332 45567789999999999999999


Q ss_pred             HHHHHhh---CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 004984          535 VQAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS  611 (721)
Q Consensus       535 ~~kal~L---~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g  611 (721)
                      |++++++   .|++..                                                      ..+.+++++|
T Consensus        89 ~~~al~~~~~~~~~~~------------------------------------------------------~~~~~~~~lg  114 (203)
T 3gw4_A           89 FLEERELLASLPEDPL------------------------------------------------------AASANAYEVA  114 (203)
T ss_dssp             HHHHHHHHHHSCCCHH------------------------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHH------------------------------------------------------HHHHHHHHHH
Confidence            9999998   332200                                                      1134678899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      .++..+|++++|++.+++|+++.+..      +.++.++|.++..+|++++|+..+++|+++-+...
T Consensus       115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999876543      23458999999999999999999999999855443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.41  E-value=6e-12  Score=110.49  Aligned_cols=121  Identities=14%  Similarity=0.117  Sum_probs=95.2

Q ss_pred             cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          474 LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       474 LdP~~-~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                      ++|.. +.+|+.+|.++...|++++|+..|++++..+|+ +..+..++.++...|++++|+..|+++++++|++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------   76 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------   76 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence            46666 778888888888888888888888888888885 6777778888888888888888777777766664      


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                                                                          +.+++++|.++..+|++++|+..+++++
T Consensus        77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                                                                3345677888888888888888888888


Q ss_pred             HhCCCChhHHHHHHHHHHhcC
Q 004984          632 QHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       632 ~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      +++|++..++.++|.++..+|
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          105 ELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhCCCcHHHHHHHHHHHHhcc
Confidence            888888888888888877655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.41  E-value=4.1e-12  Score=135.08  Aligned_cols=242  Identities=10%  Similarity=0.020  Sum_probs=185.9

Q ss_pred             HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984          394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT  472 (721)
Q Consensus       394 ~~~g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi  472 (721)
                      +-.|.|..++....+ +.. ++.....+..|.+..+|++...       .. .+++..+......|.. .+|+..|++.+
T Consensus        24 fy~G~yq~~i~e~~~-~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~-~~a~~~l~~l~   93 (310)
T 3mv2_B           24 YYTGNFVQCLQEIEK-FSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD-TKNIEELENLL   93 (310)
T ss_dssp             HTTTCHHHHTHHHHT-SSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT-TTCCHHHHHTT
T ss_pred             HHhhHHHHHHHHHHh-cCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence            456888888874332 222 3444667788999999998742       12 2234333333333332 33889999999


Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQAILTLSPD-----  544 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~-----  544 (721)
                      +..+....++..+|.++...|++++|+..+.++|+.+|  + .++....+.++..+|+.+.|.+.+++..+.+|+     
T Consensus        94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~  173 (310)
T 3mv2_B           94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD  173 (310)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence            98877788889999999999999999999999999987  4 565566778999999999999999999999994     


Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChH
Q 004984          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPE  621 (721)
Q Consensus       545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~e  621 (721)
                      +.      ...+             .+++|+.+...-   +++. |..+|+++.+..|.  .+..+++   ++.++|+++
T Consensus       174 d~------~l~~-------------Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~  228 (310)
T 3mv2_B          174 NE------MILN-------------LAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIA  228 (310)
T ss_dssp             HH------HHHH-------------HHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHH
T ss_pred             hH------HHHH-------------HHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHH
Confidence            31      1122             255677766542   2333 68899999888886  4556655   899999999


Q ss_pred             HHHHHHHHHHHh----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          622 AAMRSLQLARQH----------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       622 eAl~~~~~Al~l----------~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|.+.+++++++          +|++++++.|...+.+.+|+  +|-+.++|+..++|+-.
T Consensus       229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999999988887          59999999999999999998  99999999999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.41  E-value=5.8e-12  Score=131.15  Aligned_cols=162  Identities=10%  Similarity=-0.074  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch--------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------  448 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------  448 (721)
                      ...+...+..+...|+|++|+..|.++++..+.        ..+.++|.++..+|++++|+..+.++++..+..      
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345567788899999999999999999987321        235668889999999999999999999864432      


Q ss_pred             HHHHHHHhh----cCChhHHHHHHHHHH---hcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 004984          449 GWMYQERSL----YCEGDKRWEDLDKAT---ALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGFKLA------  511 (721)
Q Consensus       449 ~~ay~~rg~----~~~~~eAl~d~~kAi---eLdP~~~----~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~------  511 (721)
                      +.+|.+.|.    .+++++|+..|++|+   +..|+..    .+|+++|.+|..+|++++|+..|++|+++.++      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            445555553    255599999999999   5567643    69999999999999999999999999998653      


Q ss_pred             -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCCC
Q 004984          512 -LECLELRFCFFLALEDYQAA-LCDVQAILTLSPD  544 (721)
Q Consensus       512 -~~~~~~R~~~~~~lgd~eeA-l~d~~kal~L~P~  544 (721)
                       ...+++.|.++..+|++++| ...|++|+.+...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~  269 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence             56678899999999999999 7779999987543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.41  E-value=6.3e-13  Score=121.03  Aligned_cols=95  Identities=12%  Similarity=0.073  Sum_probs=79.4

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |..+...|++   ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..+..+|.++..+|+
T Consensus        24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3444444444   77888889999999999999999999999999999999999999999996 7888899999999999


Q ss_pred             HHHHHHHHHHHHhhCCCch
Q 004984          528 YQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~  546 (721)
                      +++|+..|+++++++|++.
T Consensus       101 ~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999873

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.41  E-value=4.4e-13  Score=131.11  Aligned_cols=164  Identities=8%  Similarity=-0.110  Sum_probs=120.0

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      ..+....+-+.....+|++++|.+.++...+-.+. ...+..+|..+...|++++|+..|++++++.|++..+....   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---   78 (198)
T 2fbn_A            2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI---   78 (198)
T ss_dssp             --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---
T ss_pred             CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---
Confidence            33445566777888899999999988887766664 66678899999999999999999999999999875322110   


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                                                        +......+     ...+++++|.++..+|++++|+..+++|++++|
T Consensus        79 ----------------------------------~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           79 ----------------------------------LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence                                              00011111     157899999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984          636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA  682 (721)
Q Consensus       636 ~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~  682 (721)
                      +++.+++++|.+++.+|++++|+..|++|++++|+.. ++.+.+.++.
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887 7777776553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=4.6e-13  Score=128.75  Aligned_cols=92  Identities=12%  Similarity=0.055  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-------
Q 004984          590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQHAASDHERLVYEGWILYDTS-------  652 (721)
Q Consensus       590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----------eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G-------  652 (721)
                      +..++++++++|+++++|++.|.+|..++++          ++|+..|++|++++|+++++++++|.+|+.+|       
T Consensus        22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~  101 (158)
T 1zu2_A           22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET  101 (158)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence            7899999999999999999999999999886          59999999999999999999999999999985       


Q ss_pred             ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 004984          653 ----HCEEGLRKAEESIQMKRSFEAFFLKAYALA  682 (721)
Q Consensus       653 ----~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~  682 (721)
                          ++++|+..|++|++|+|+++.| .+++.++
T Consensus       102 ~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~  134 (158)
T 1zu2_A          102 EAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMT  134 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence                8999999999999999998855 3444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.4e-12  Score=115.18  Aligned_cols=120  Identities=18%  Similarity=0.096  Sum_probs=85.8

Q ss_pred             HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      ++..+|+.+..++.+|..+...|++++|+..|+++++++|+    ...+.++|.++..+|++++|+..|+++++++|++ 
T Consensus        20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-   98 (148)
T 2dba_A           20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-   98 (148)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-
T ss_pred             CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-
Confidence            34567778888888888888888888888888888888886    3455666777777777777777666666665554 


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984          547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS  626 (721)
Q Consensus       547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~  626 (721)
                                                                               +.+++++|.++..+|++++|+..
T Consensus        99 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~  121 (148)
T 2dba_A           99 ---------------------------------------------------------VKALYRRSQALEKLGRLDQAVLD  121 (148)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence                                                                     23456667777777777777777


Q ss_pred             HHHHHHhCCCChhHHHHHHHHH
Q 004984          627 LQLARQHAASDHERLVYEGWIL  648 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~L  648 (721)
                      ++++++++|++.+++..++.+.
T Consensus       122 ~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          122 LQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHH
Confidence            7777777777777666666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.38  E-value=2.4e-13  Score=153.17  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=106.8

Q ss_pred             CCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 004984          446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA  524 (721)
Q Consensus       446 ~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~  524 (721)
                      .+.|..|..+|++   ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +..++++|.++..
T Consensus        10 ~~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1           10 KTQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445555556555   89999999999999999999999999999999999999999999999996 7888899999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHH--------
Q 004984          525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY--------  594 (721)
Q Consensus       525 lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~--------  594 (721)
                      +|++++|+..|+++++++|++..+      ...++.+  .....++++|                  +..++        
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~  142 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDA------KMKYQECNKIVKQKAFERA------------------IAGDEHKRSVVDS  142 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTH------HHHHHHHHHHHHHHHHCCC------------------------CCSTTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHH------------------hccccccchhHhh
Confidence            999999999999999999998542      2222222  2223444444                  44444        


Q ss_pred             ---HHHHhCCCChhHHHHHH
Q 004984          595 ---QMLESDAPKGVLYFRQS  611 (721)
Q Consensus       595 ---qaL~l~P~~~~~~~~~g  611 (721)
                         ++++++|.....++..+
T Consensus       143 ~~~~al~~~~~~~~~~~~~~  162 (477)
T 1wao_1          143 LDIESMTIEDEYSGPKLEDG  162 (477)
T ss_dssp             CTTSSCCCCTTCCSCCCGGG
T ss_pred             hhhhhccccccccccccccc
Confidence               77888888877776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=9.1e-13  Score=141.49  Aligned_cols=154  Identities=8%  Similarity=-0.062  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG  461 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~  461 (721)
                      ....++++|..+...|+|++|+..|++||+..+.+..      +...|++.++...+..  ..+-+.|.+|..+|++   
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~~--~~~~nla~~~~~~g~~---  246 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVKN--PCHLNIAACLIKLKRY---  246 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHHT--HHHHHHHHHHHTTTCC---
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHHH--HHHHHHHHHHHHcCCH---
Confidence            4567889999999999999999999999999766542      2234445555444321  2334566777777666   


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDYQAALCDVQAIL  539 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~eeAl~d~~kal  539 (721)
                      ++|+.+|++|++++|+++.+|+++|.+|..+|++++|+.+|++|++++|+ ...+..++.+ ....+..++|...|++++
T Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999996 6666667665 566788899999999999


Q ss_pred             hhCCCch
Q 004984          540 TLSPDYR  546 (721)
Q Consensus       540 ~L~P~~~  546 (721)
                      .++|++.
T Consensus       327 ~~~p~~~  333 (338)
T 2if4_A          327 KGKDEGG  333 (338)
T ss_dssp             -------
T ss_pred             CCCCCCC
Confidence            9999873

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.33  E-value=8.4e-12  Score=107.84  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=44.8

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      ++|+++.+|..+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|+
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            46677777777777777777777777777777766664 455555555555555555555555555555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=2.9e-11  Score=105.18  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~  544 (721)
                      .+|..+|.++...|++++|+..|++++.++|+ +..+..+|.++..+|++++|+..++++++++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            34555555555555555555555555555553 444444455555555555544444444444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.32  E-value=1.7e-11  Score=111.11  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=79.6

Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++.+|.++..+|++++|+..|+++
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3377777888999999999999999999999999999999999999999996 788899999999999999999999999


Q ss_pred             HhhCCCc
Q 004984          539 LTLSPDY  545 (721)
Q Consensus       539 l~L~P~~  545 (721)
                      ++++|+.
T Consensus       104 ~~~~p~~  110 (137)
T 3q49_B          104 YSLAKEQ  110 (137)
T ss_dssp             HHHHHHT
T ss_pred             HHHChhH
Confidence            9999984

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.32  E-value=1.3e-12  Score=144.84  Aligned_cols=237  Identities=13%  Similarity=-0.053  Sum_probs=95.9

Q ss_pred             HHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHH
Q 004984          391 CVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWE  466 (721)
Q Consensus       391 ~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~  466 (721)
                      +.....|++++|.+.+++.   ++..+|..+|.++..+|++.+|++.|.++-     +...|+..+.    .|+.++|+.
T Consensus        11 ~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~-----D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-----CHHHHHHHHHHHHhCCCHHHHHH
Confidence            3445678899999999986   667899999999999999999999997752     2234433322    344499999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       467 d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      .|.++++..|+ +.....++.+|..+|++.++...++     .|+...+...|..+...|+|++|+..|.++    +++ 
T Consensus        83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~-  151 (449)
T 1b89_A           83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF-  151 (449)
T ss_dssp             ---------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----TCH-
T ss_pred             HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhH-
Confidence            99999986555 7888899999999999999887775     477778888999999999999999999987    332 


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984          547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS  626 (721)
Q Consensus       547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~  626 (721)
                               ..++.+.-.+++++.                  |+..+.+|     +++..|-..+.+...+|+++.|...
T Consensus       152 ---------~~LA~~L~~Lg~yq~------------------AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          152 ---------GRLASTLVHLGEYQA------------------AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             ---------HHHHHHHHTTTCHHH------------------HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             ---------HHHHHHHHHhccHHH------------------HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHH
Confidence                     111111222222333                  47788888     5889999999999999999999887


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 004984          627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA  682 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~  682 (721)
                      ... +...|++   +.....++.+.|+++||+..+|+++.++|.-. +|.--|.+++
T Consensus       200 ~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          200 GLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             TTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            774 4466555   44577788999999999999999999999887 8888776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=1.7e-11  Score=109.46  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++
T Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44444445555555555555555555555555555555555555555553 44445555555555555555555555555


Q ss_pred             hCCCc
Q 004984          541 LSPDY  545 (721)
Q Consensus       541 L~P~~  545 (721)
                      ++|++
T Consensus       113 ~~p~~  117 (133)
T 2lni_A          113 LDSSC  117 (133)
T ss_dssp             HCGGG
T ss_pred             hCCCc
Confidence            55554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.32  E-value=2e-11  Score=127.11  Aligned_cols=158  Identities=10%  Similarity=-0.059  Sum_probs=126.5

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccc---h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHH
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH---I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWM  451 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~-----~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~------~~a  451 (721)
                      +......+...|+|++|+..|+++++..+   .     ..+.++|.++...|++++|+..+.+++...+..      +.+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            34456778889999999999999998632   1     123358888998999999999999999864321      235


Q ss_pred             HHHHhhc----CChhHHHHHHHHHHh-------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HH
Q 004984          452 YQERSLY----CEGDKRWEDLDKATA-------LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LE  513 (721)
Q Consensus       452 y~~rg~~----~~~~eAl~d~~kAie-------LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-------~~  513 (721)
                      |.+.|.+    +++++|+..|++|++       ..|..+.+|+++|.+|..+|++++|+..+++||++.+.       ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            5555532    466999999999994       34455679999999999999999999999999998642       46


Q ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 004984          514 CLELRFCFFLALE-DYQAALCDVQAILTLSP  543 (721)
Q Consensus       514 ~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P  543 (721)
                      .++++|.++..+| ++++|+..|++|+++..
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            6788999999999 57999999999998753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.31  E-value=1e-11  Score=135.28  Aligned_cols=124  Identities=17%  Similarity=0.154  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILG----------------FKLA-LECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~----------------l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      +..|.++|.++...|++++|+..|++||+                ++|. ...+.++|.++..+|++++|+.+|++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999998                6664 566778888888888888888888877777


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE  621 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e  621 (721)
                      +|++                                                          +.+|+++|.++..+|+++
T Consensus       303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~  324 (370)
T 1ihg_A          303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD  324 (370)
T ss_dssp             CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred             Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence            7765                                                          456888999999999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       622 eAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                      +|+..|++|++++|++.+++..++.++..+|+++++...
T Consensus       325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.31  E-value=3.9e-12  Score=114.04  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHh---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          589 SLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       589 al~~~~qaL~l---~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      |+..++++|++   +|.++.+++++|.++..+|++++|+..+++|++++|+++++++++|.+++.+|++++|+..+++++
T Consensus         9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A            9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            68999999999   799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHH--HHHHHHHHhhccCCCC
Q 004984          666 QMKRSFE--AFFLKAYALADSSQDS  688 (721)
Q Consensus       666 ~i~~~~~--a~~~~~~~~~~~~~~~  688 (721)
                      ++.|+..  ..+.++.......+|.
T Consensus        89 ~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           89 AETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999876  5566777666666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.30  E-value=2.2e-11  Score=107.71  Aligned_cols=67  Identities=18%  Similarity=0.104  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY  528 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~  528 (721)
                      ++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+...+.++..+|++
T Consensus        63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            44444455555556666666666666666666666666666666666663 45555555565555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.30  E-value=3.7e-11  Score=107.71  Aligned_cols=119  Identities=11%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      .+++++|.++...|++++|+..|+++++.+|+ +   ..++.+|.++..+|++++|+..|+++++++|++.         
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---------   73 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---------   73 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence            34566677777777777777777777776664 3   4556666666677777776666666666666641         


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA  635 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P  635 (721)
                                                                    ..+.+++++|.++..+|++++|+..++++++..|
T Consensus        74 ----------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           74 ----------------------------------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             ----------------------------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             ----------------------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence                                                          0123456666666667777777777777777777


Q ss_pred             CChhHHHHHHHHHHhcCC
Q 004984          636 SDHERLVYEGWILYDTSH  653 (721)
Q Consensus       636 ~~~ea~~~~G~~Ly~~G~  653 (721)
                      ++..+...+..+-.-.++
T Consensus       108 ~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A          108 GSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             TSHHHHHHHHHHHHHC--
T ss_pred             CChHHHHHHHHHHHHHhh
Confidence            666666555555444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=5.2e-12  Score=115.62  Aligned_cols=140  Identities=11%  Similarity=0.020  Sum_probs=118.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                      +.++.++|.++...|++++|+..+++++++.+..       ..+...|.++..+|++++|+..|++++++.|+...    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----   84 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----   84 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence            5688999999999999999999999999986531       25667889999999999999999999988665310    


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                                                                      .+..+.+++++|.++..+|++++|+..+++|+
T Consensus        85 ------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           85 ------------------------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             ------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------------------------------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                                                            00113567889999999999999999999999


Q ss_pred             HhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          632 QHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       632 ~l~P~------~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      ++.+.      .+.++.++|.+++.+|++++|+..+++|+++.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            98543      3678999999999999999999999999988654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=2.6e-11  Score=105.50  Aligned_cols=92  Identities=14%  Similarity=-0.020  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      |+..+++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++++
T Consensus        23 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHH
Q 004984          669 RSFE-AFFLKAYA  680 (721)
Q Consensus       669 ~~~~-a~~~~~~~  680 (721)
                      |+.. +++..|.+
T Consensus       103 ~~~~~~~~~l~~~  115 (118)
T 1elw_A          103 ANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHh
Confidence            9887 76666544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.29  E-value=4.1e-11  Score=107.47  Aligned_cols=107  Identities=11%  Similarity=-0.058  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984          515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY  594 (721)
Q Consensus       515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~  594 (721)
                      ++.+|..+...|++++|+..|+++++.+|++.                                                
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------------------------------------------   36 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV------------------------------------------------   36 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------------------------------------------------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------------------------------------------------
Confidence            56778888889999999998888888888762                                                


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                             ..+.+++++|.++..+|++++|+..|+++++.+|++   +++++++|.+++.+|++++|+..|++++++.|+.
T Consensus        37 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           37 -------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             -------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             -------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence                   112578889999999999999999999999999999   8999999999999999999999999999999987


Q ss_pred             H-HHHH
Q 004984          672 E-AFFL  676 (721)
Q Consensus       672 ~-a~~~  676 (721)
                      . +...
T Consensus       110 ~~~~~a  115 (129)
T 2xev_A          110 DAARVA  115 (129)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            7 4433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=8.9e-11  Score=102.90  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      ...++..|.++...|++++|+..|+++++.+|++                                              
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------------   42 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----------------------------------------------   42 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence            4556667777777888777777777776666554                                              


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                                  +.+++++|.++...|++++|+..++++++.+|+++.+++++|.+++.+|++++|+..|++++.+.|+.
T Consensus        43 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           43 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence                        45677889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             H-HHHHHHHHhh
Q 004984          672 E-AFFLKAYALA  682 (721)
Q Consensus       672 ~-a~~~~~~~~~  682 (721)
                      . +++..|.++.
T Consensus       111 ~~~~~~l~~~~~  122 (125)
T 1na0_A          111 AEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            7 8888887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.28  E-value=5e-12  Score=113.31  Aligned_cols=88  Identities=15%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             CChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          459 CEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       459 ~~~~eAl~d~~kAieL---dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                      ++.++|+..|++|+++   +|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4449999999999999   7999999999999999999999999999999999996 78888999999999999999999


Q ss_pred             HHHHHhhCCCch
Q 004984          535 VQAILTLSPDYR  546 (721)
Q Consensus       535 ~~kal~L~P~~~  546 (721)
                      |+++++++|++.
T Consensus        84 ~~~al~~~p~~~   95 (117)
T 3k9i_A           84 LLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHCCCH
T ss_pred             HHHHHHhCCCcH
Confidence            999999999984

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.27  E-value=2.7e-11  Score=104.59  Aligned_cols=72  Identities=10%  Similarity=0.012  Sum_probs=64.0

Q ss_pred             CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCH
Q 004984          600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~Ly~~-G~~deAl~~ye~Ai~i~~~~  671 (721)
                      +|.++.+++++|.++..+|++++|+..++++++++|+  +.++++++|.++..+ |++++|++.+++++...|+.
T Consensus        36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            3334456788999999999999999999999999999  999999999999999 99999999999999998874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-11  Score=110.66  Aligned_cols=118  Identities=14%  Similarity=0.054  Sum_probs=103.6

Q ss_pred             cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 004984          508 FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD  586 (721)
Q Consensus       508 l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd  586 (721)
                      .+|. ...+..+|..+...|++++|+..|+++++++|++..                                       
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------------------   63 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---------------------------------------   63 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------------------------------
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------------------------------
Confidence            3453 677888999999999999999999999999998510                                       


Q ss_pred             cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                                      .+.+++++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++
T Consensus        64 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           64 ----------------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                            1356888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHH-HHHHHHHH
Q 004984          667 MKRSFE-AFFLKAYA  680 (721)
Q Consensus       667 i~~~~~-a~~~~~~~  680 (721)
                      ++|+.. ++...+-+
T Consensus       128 ~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          128 LEPKNKVFQEALRNI  142 (148)
T ss_dssp             HCSSCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHH
Confidence            999876 66555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.27  E-value=2e-11  Score=133.08  Aligned_cols=138  Identities=12%  Similarity=0.115  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG  461 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~  461 (721)
                      ....+..+|..+...|+|++|+..|++||++.+...                                            
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------------------------------------  257 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------------------------------------  257 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------
Confidence            456677888888888888888888888877532210                                            


Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                        +..+.+++.+++|.++.+|.++|.++..+|++++|+..+++||+++|+ +..++.+|.++..+|++++|+.+|++|++
T Consensus       258 --~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          258 --AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             --HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              011245677788889999999999999999999999999999999996 78888899999999999999999999999


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      ++|++.      .+...+..+.....+.+++
T Consensus       336 l~P~~~------~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          336 IAPEDK------AIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCH------HHHHHHHHHHHHHHHHHHH
Confidence            999983      3455555555555555555

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=2.6e-11  Score=116.96  Aligned_cols=151  Identities=11%  Similarity=-0.078  Sum_probs=95.4

Q ss_pred             hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHhh----cCChh
Q 004984          395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS------SVTPLGWMYQERSL----YCEGD  462 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~------~~~~~~~ay~~rg~----~~~~~  462 (721)
                      ..|+|++|++.++.....  ....++..+|.++..+|++++|+..+.++++      ..+..+.++.+.|.    .++.+
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            345555555533322221  1233445555555555555555555555555      22223333333332    13346


Q ss_pred             HHHHHHHHHHhc---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHhcCCH
Q 004984          463 KRWEDLDKATAL---DP----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---AL----ECLELRFCFFLALEDY  528 (721)
Q Consensus       463 eAl~d~~kAieL---dP----~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P---~~----~~~~~R~~~~~~lgd~  528 (721)
                      +|+..|++|+++   .|    ..+.++.++|.++..+|++++|+..+++++++.+   ++    ..+.++|.++..+|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            666666666666   23    3457899999999999999999999999998632   22    2346788999999999


Q ss_pred             HHHHHHHHHHHhhCCCc
Q 004984          529 QAALCDVQAILTLSPDY  545 (721)
Q Consensus       529 eeAl~d~~kal~L~P~~  545 (721)
                      ++|+..+++++++....
T Consensus       164 ~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          164 LEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999986554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.25  E-value=4e-11  Score=106.32  Aligned_cols=125  Identities=8%  Similarity=-0.009  Sum_probs=104.8

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |+.+..|+.+|.++...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++....     
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----   75 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY-----   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-----
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-----
Confidence            345678999999999999999999999999999996 78888899999999999999999999999988651100     


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 004984          555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA  634 (721)
Q Consensus       555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~  634 (721)
                                                                    +..+.+++++|.++..+|++++|+..+++++++.
T Consensus        76 ----------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           76 ----------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence                                                          0113567889999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcC
Q 004984          635 ASDHERLVYEGWILYDTS  652 (721)
Q Consensus       635 P~~~ea~~~~G~~Ly~~G  652 (721)
                      | +.+....++.+.-.++
T Consensus       110 ~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A          110 R-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             C-CHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHH
Confidence            9 5888888887765544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.24  E-value=5.9e-11  Score=128.74  Aligned_cols=218  Identities=13%  Similarity=0.021  Sum_probs=159.9

Q ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 004984          419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA  498 (721)
Q Consensus       419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eA  498 (721)
                      ...|+.+...|++.+|++.|.++++..++.+.++..++..   .......++|          +.++|.+|..+|++++|
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~a----------l~~l~~~y~~~~~~~~a   74 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQETS----------ILELGQLYVTMGAKDKL   74 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHHHH----------HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHHHH----------HHHHHHHHHHCCCHHHH
Confidence            4456667777888888888888888777666655555443   4445555544          47888999999999999


Q ss_pred             HHHHHHHHhcCCC-HHH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 004984          499 LAEINRILGFKLA-LEC------LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA  571 (721)
Q Consensus       499 l~~~~kAL~l~P~-~~~------~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A  571 (721)
                      +..|.+++.+.+. ...      ..+.+.++...|++++|+..+++++...+....-.++..+...++.+.....++++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence            9999988887553 111      233566777888899999999888887665433334455566666666666666666


Q ss_pred             HHHHhhhhccccccccchHHHHHHHHHh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Q 004984          572 DCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------H  638 (721)
Q Consensus       572 ~~~~~l~~~~~~~dd~~al~~~~qaL~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~  638 (721)
                                        +..+.+++..      .|..++++.++|.++..+|++++|...|++|+...|..       +
T Consensus       155 ------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          155 ------------------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             ------------------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             ------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence                              5556666655      45667899999999999999999999999999886543       3


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQM  667 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i  667 (721)
                      ..+.+.|.++...|+|++|...|.++++.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45677788888899999999999999874

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.21  E-value=2.9e-11  Score=106.99  Aligned_cols=81  Identities=25%  Similarity=0.399  Sum_probs=65.5

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhc-----c---CCCC--CC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV  250 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Y-----t---g~l~--~i  250 (721)
                      |+|+- +|++|.+||.| |++|+||++||.+  ++.|+....|.|+  +|++.+|+.+++|+|     +   +.++  ++
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i   80 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI   80 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence            56665 78999999999 9999999999987  7888888999999  599999999999999     5   5554  37


Q ss_pred             CHHHHHHHHHHhhhcCh
Q 004984          251 TPNLLLEILIFANKFCC  267 (721)
Q Consensus       251 ~~~~v~~LL~aAd~~~v  267 (721)
                      +++++++|+.||++|++
T Consensus        81 ~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           81 APEIALELLMAANFLDC   97 (97)
T ss_dssp             CGGGHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhhhCC
Confidence            78999999999999975

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.19  E-value=9.5e-11  Score=104.10  Aligned_cols=84  Identities=13%  Similarity=0.011  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999996 78889999999999999999999999999


Q ss_pred             hCCCc
Q 004984          541 LSPDY  545 (721)
Q Consensus       541 L~P~~  545 (721)
                      ++|+.
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            99975

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.19  E-value=1.2e-10  Score=103.20  Aligned_cols=107  Identities=10%  Similarity=0.010  Sum_probs=92.2

Q ss_pred             HHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHH
Q 004984          574 WLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEG  645 (721)
Q Consensus       574 ~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G  645 (721)
                      |..++......+++. |+..+.+++..+|.++.+++++|.++..+|++++|+..+++++++.|++       +.+++++|
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            333433333344444 5889999999999999999999999999999999999999999999988       99999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004984          646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA  680 (721)
Q Consensus       646 ~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~  680 (721)
                      .+++.+|++++|+..|++++++.|+.......+.+
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~  121 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999987766655544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.17  E-value=2.7e-10  Score=104.03  Aligned_cols=140  Identities=15%  Similarity=0.019  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--h------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--I------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY  452 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay  452 (721)
                      ....++..+|.++...|++++|+..|++|+++.+  .      .++..+|.++..+|++++|+..+.++++..+..+.  
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--   84 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence            3467788999999999999999999999998722  1      36777888888888888888888777765432110  


Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHhc
Q 004984          453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLAL  525 (721)
Q Consensus       453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P---~----~~~~~~R~~~~~~l  525 (721)
                                            .+..+.++.++|.++..+|++++|+..+++++++.+   +    ...+..++.++..+
T Consensus        85 ----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  142 (164)
T 3ro3_A           85 ----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  142 (164)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence                                  011256788999999999999999999999998732   1    23456788999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q 004984          526 EDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~  544 (721)
                      |++++|+..+++++++...
T Consensus       143 g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          143 GNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.14  E-value=1.6e-10  Score=102.70  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK  668 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~  668 (721)
                      ++..++++++.+|.++.+++++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++++++.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHH
Q 004984          669 RSFE  672 (721)
Q Consensus       669 ~~~~  672 (721)
                      |+..
T Consensus        84 ~~~~   87 (115)
T 2kat_A           84 QSRG   87 (115)
T ss_dssp             HHHT
T ss_pred             cccc
Confidence            8653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.12  E-value=1.7e-09  Score=117.12  Aligned_cols=157  Identities=11%  Similarity=0.059  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          515 LELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       515 ~~~R~~~~~~lgd---~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      ++.||.-+...++   +.+|+..|++|++++|+|..++...+..+..   ......+.... ...+..         ++.
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~---~~~~~~~~~~~-~~~l~~---------a~~  265 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV---RHSQHPLDEKQ-LAALNT---------EID  265 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHSCCCHHH-HHHHHH---------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhccCCCchhh-HHHHHH---------HHH
Confidence            3556665554433   4778888888888888885433222211110   00000000000 000000         011


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                       --.++..+|.++.+|.-.|..+...|++++|++.+++|++++|+ +.++..+|+++...|++++|++.|++|+.++|+.
T Consensus       266 -a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          266 -NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             -HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             -HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             11345788999999999999999999999999999999999975 7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCC
Q 004984          672 EAFFLKAYALADSSQ  686 (721)
Q Consensus       672 ~a~~~~~~~~~~~~~  686 (721)
                      +.|++-.-..=.|+|
T Consensus       344 ~t~~~~~~l~F~sn~  358 (372)
T 3ly7_A          344 NTLYWIENGIFQTSV  358 (372)
T ss_dssp             HHHHHHHHSSSCCCH
T ss_pred             ChHHHHhCceeecch
Confidence            987775554445554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.06  E-value=2.9e-10  Score=99.47  Aligned_cols=73  Identities=8%  Similarity=0.058  Sum_probs=68.0

Q ss_pred             hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 004984          599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF  671 (721)
Q Consensus       599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~  671 (721)
                      .+|+++.+|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|+++.|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999997654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.05  E-value=8.1e-10  Score=119.75  Aligned_cols=172  Identities=8%  Similarity=-0.060  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL------------------ECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~------------------~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      .+....|..+...|+|++|+..|.+++...|+.                  .++..+|.+|..+|++++|+..|++++++
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344556666777777777777777777766641                  13567889999999999999999999998


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC------CCChhHHHHHHHHHH
Q 004984          542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------APKGVLYFRQSLLLL  615 (721)
Q Consensus       542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~------P~~~~~~~~~g~~L~  615 (721)
                      .+..........+....+.+......+++|                  +..+.+++...      +..+.++.++|.++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  146 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLHY  146 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            887644433344555555555455555555                  55666666653      344678999999999


Q ss_pred             HcCChHHHHHHHHHHHHh------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          616 RLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       616 ~lg~~eeAl~~~~~Al~l------~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      .+|++++|+..+++++..      .|..++++.++|.++..+|++++|...|++|+.+.+
T Consensus       147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            999999999999999987      555678999999999999999999999999998753

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.05  E-value=4.9e-10  Score=105.88  Aligned_cols=100  Identities=20%  Similarity=0.285  Sum_probs=85.9

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC----------------
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS----------------  246 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~----------------  246 (721)
                      |+|+. +|+.|.+||.+ |..|++|++||.+.-    ...|.|+  +|+..+|+.+++|+|+..                
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~   76 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT   76 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence            67777 88999999998 899999999998631    4579999  599999999999999876                


Q ss_pred             ----------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcCCHhhHHHHH
Q 004984          247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELM  292 (721)
Q Consensus       247 ----------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~~~l~  292 (721)
                                +. ++.+++.+|+.||+++++..|.+.|+++++..+.. .+.-++.
T Consensus        77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR  130 (141)
T 1fs1_B           77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIR  130 (141)
T ss_dssp             ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCHHHHH
T ss_pred             hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHH
Confidence                      65 88999999999999999999999999999999863 3343333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.05  E-value=8.1e-10  Score=95.97  Aligned_cols=83  Identities=6%  Similarity=-0.007  Sum_probs=75.8

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFF  675 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~------~-a~~  675 (721)
                      ++..++++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|+.      . +++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999996      4 888


Q ss_pred             HHHHHhhccC
Q 004984          676 LKAYALADSS  685 (721)
Q Consensus       676 ~~~~~~~~~~  685 (721)
                      .+|.++...+
T Consensus        83 ~~~~~~~~~~   92 (111)
T 2l6j_A           83 RLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888765443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.4e-10  Score=100.86  Aligned_cols=59  Identities=12%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      .+|+++|.++..+|++++|+..+++|++++|++      +.+++.+|.++..+|++++|+..+++
T Consensus        39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            445566666666666666666666666666666      66666667666666666666555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.02  E-value=1e-09  Score=92.02  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=77.2

Q ss_pred             CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984          601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY  679 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~  679 (721)
                      |.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++++|+.. ++++.|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999999877 9998888


Q ss_pred             Hhh
Q 004984          680 ALA  682 (721)
Q Consensus       680 ~~~  682 (721)
                      ++.
T Consensus        86 ~~~   88 (91)
T 1na3_A           86 AKQ   88 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.99  E-value=7.7e-10  Score=96.71  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=66.3

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .+|+++.+|+++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|+.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            48999999999999999999999999999999999996 7888999999999999999999999999998875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.97  E-value=4.6e-09  Score=111.65  Aligned_cols=203  Identities=12%  Similarity=-0.095  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHhh----cCChhHHHHHHHHHHh
Q 004984          402 AEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT--PLGWMYQERSL----YCEGDKRWEDLDKATA  473 (721)
Q Consensus       402 A~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~--~~~~ay~~rg~----~~~~~eAl~d~~kAie  473 (721)
                      |+..|++.++.+  ...++..+|.++...|++++|++++.+.|...|  +...++.....    .++.+.|.+.+++..+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            566666666542  233445666677766666666666555544443  22222211111    1222444444444444


Q ss_pred             cCCC----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          474 LDPT----LSYPYMYRASS--LMTKQ--NVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       474 LdP~----~~~ay~~rg~~--l~~lg--~~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      .+|+    .-....+++.+  .+..|  ++++|+..|+++..-.|+   +..+.+   ++..+|++++|.+++++++++.
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            4442    11122222222  33223  555555555555554444   122222   5555555555555555555554


Q ss_pred             CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 004984          543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA  622 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee  622 (721)
                      |+..                                                +.-..+|+++++..|+..+-..+|+  +
T Consensus       242 p~~~------------------------------------------------~k~~~~p~~~~~LaN~i~l~~~lgk--~  271 (310)
T 3mv2_B          242 YSVE------------------------------------------------QKENAVLYKPTFLANQITLALMQGL--D  271 (310)
T ss_dssp             HHTT------------------------------------------------TCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred             cccc------------------------------------------------ccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence            4320                                                0011258889999999888888997  7


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                      |.+.++++..++|+++....+..    ....||++..+|
T Consensus       272 a~~l~~qL~~~~P~hp~i~d~~~----k~~~Fd~~~~ky  306 (310)
T 3mv2_B          272 TEDLTNQLVKLDHEHAFIKHHQE----IDAKFDELVRKY  306 (310)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHh
Confidence            99999999999999998765532    233455555444

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.95  E-value=2.7e-10  Score=109.99  Aligned_cols=107  Identities=16%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC----------------
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS----------------  246 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~----------------  246 (721)
                      |+|+. +|+.|.+||.+ |..|++|++||.++.   ....|.|+  +|+..+|+.|++|+|+..                
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~   79 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS   79 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC---------------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence            66765 79999999998 899999999998763   23478888  599999999999999986                


Q ss_pred             -----------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC--CHhhHHHHHHHhcc
Q 004984          247 -----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYAIE  297 (721)
Q Consensus       247 -----------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~~~l~~~A~~  297 (721)
                                 +. ++.+++.+|+.||++|++..|.+.|+++++.++.  +++....++.....
T Consensus        80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd  142 (160)
T 2p1m_A           80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKND  142 (160)
T ss_dssp             ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCC
T ss_pred             cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC
Confidence                       34 7788999999999999999999999999999985  46666555544433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.87  E-value=1.6e-09  Score=93.10  Aligned_cols=87  Identities=7%  Similarity=-0.050  Sum_probs=73.1

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~-ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      |..+...|++   ++|+..|+++++++|+++. +|+++|.++..+|++++|+..|+++++++|+ +..+.+        +
T Consensus         7 a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            7 IKELINQGDI---ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHTCH---HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHcCCH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            4556666555   8888889999999999999 9999999999999999999999999999997 444322        6


Q ss_pred             CHHHHHHHHHHHHhhCCCch
Q 004984          527 DYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~  546 (721)
                      .+.+|+..|++++.++|++.
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            68899999999999998863

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.86  E-value=5.5e-08  Score=101.72  Aligned_cols=82  Identities=5%  Similarity=-0.001  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHhCCC--ChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-CCHHHHHH
Q 004984          589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT-SHCEEGLR  659 (721)
Q Consensus       589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~l-----g~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~Ly~~-G~~deAl~  659 (721)
                      +.+.++|||++||+  ++.+|..+|.++.++     |+++.|.+.|++|++++|+. .+.++..|..|... |++++|.+
T Consensus       182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~  261 (301)
T 3u64_A          182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE  261 (301)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence            35589999999999  788999999999997     99999999999999999975 99999999999885 99999999


Q ss_pred             HHHHHHhcCCC
Q 004984          660 KAEESIQMKRS  670 (721)
Q Consensus       660 ~ye~Ai~i~~~  670 (721)
                      .+++|+++.|.
T Consensus       262 ~L~kAL~a~p~  272 (301)
T 3u64_A          262 ALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCGG
T ss_pred             HHHHHHcCCCC
Confidence            99999999877

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.85  E-value=2.5e-08  Score=83.32  Aligned_cols=48  Identities=10%  Similarity=0.000  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      .+++++|.++..+|++++|+..++++++++|+++.++.++|.++..+|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            345667777777777777777777777777777777777777776654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.85  E-value=4e-08  Score=106.40  Aligned_cols=144  Identities=16%  Similarity=0.087  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhc---cchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q 004984          383 LLAFHQLGCVRLLR---KEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL  457 (721)
Q Consensus       383 ~la~~~lG~~~~~~---g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~  457 (721)
                      +..++.+|..+..+   ..+.+|+.+|++||+++|.+  ++..++.++...       .      ...+..+......  
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------~------~~~~~~~~~~~~l--  260 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------H------SQHPLDEKQLAAL--  260 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------H------HHSCCCHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------h------ccCCCchhhHHHH--
Confidence            44556777776654   45789999999999997665  555566655511       0      0001111111111  


Q ss_pred             cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA  537 (721)
Q Consensus       458 ~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~k  537 (721)
                          ..|+.. ..++.++|..+.+|.-+|.++...|++++|+..++||++++|+...+..+|.++...|++++|+..|++
T Consensus       261 ----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~  335 (372)
T 3ly7_A          261 ----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT  335 (372)
T ss_dssp             ----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                233332 246789999999999999999999999999999999999999987788899999999999999999999


Q ss_pred             HHhhCCCch
Q 004984          538 ILTLSPDYR  546 (721)
Q Consensus       538 al~L~P~~~  546 (721)
                      |+.++|...
T Consensus       336 AlrL~P~~~  344 (372)
T 3ly7_A          336 AFNLRPGAN  344 (372)
T ss_dssp             HHHHSCSHH
T ss_pred             HHhcCCCcC
Confidence            999999973

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.79  E-value=1.3e-08  Score=87.28  Aligned_cols=69  Identities=12%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984          607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF  675 (721)
Q Consensus       607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~  675 (721)
                      .+++|.++...|++++|+..++++++++|+++. +++++|.+++.+|++++|+..|+++++++|++. +++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            467888889999999999999999999999998 999999999999999999999999999999887 553

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.76  E-value=4.8e-07  Score=106.09  Aligned_cols=225  Identities=8%  Similarity=-0.066  Sum_probs=157.0

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhhc----CChhHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 004984          435 YEKLNSVISSVTPLGWMYQERSLY----CEGDKRW-EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-  508 (721)
Q Consensus       435 ~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl-~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-  508 (721)
                      ...|++++...|..+..|+.-+.+    +..++|. ..|++|+...|.....|...+......|++++|-..|++++.. 
T Consensus       329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            345666666666666666555432    3346786 8899999999999888899999999999999999999999874 


Q ss_pred             ----------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984          509 ----------KLA------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID  566 (721)
Q Consensus       509 ----------~P~------------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~  566 (721)
                                .|.            ...|...+.+..+.|+.+.|...|.+|++..|...     ..+......++... 
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~-  482 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHI-  482 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTT-
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHh-
Confidence                      242            12233344556677889999999999998722210     00111111111111 


Q ss_pred             hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHH
Q 004984          567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLV  642 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~  642 (721)
                                       .++.+ |..+|+++|+..|.++.+|...+..+...|+.+.|...|++|+...|+   ....+.
T Consensus       483 -----------------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~  545 (679)
T 4e6h_A          483 -----------------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ  545 (679)
T ss_dssp             -----------------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred             -----------------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                             12222 577999999999999999999999999999999999999999999984   333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhh
Q 004984          643 YEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALA  682 (721)
Q Consensus       643 ~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~--a~~~~~~~~~  682 (721)
                      .....-...|+.+.+.+.++|+....|+..  ..|..=|.+.
T Consensus       546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~  587 (679)
T 4e6h_A          546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVL  587 (679)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence            333334466999999999999999988854  4454444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.73  E-value=6.6e-07  Score=104.97  Aligned_cols=228  Identities=9%  Similarity=-0.030  Sum_probs=169.8

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004984          464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL-AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL  541 (721)
Q Consensus       464 Al~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl-~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L  541 (721)
                      ....|++|+...|.++..|+.-|..+...|+.++|+ ..|.+|+...|. ...+...+.+....|++++|...|++++..
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999998 999999999996 455556778899999999999999999985


Q ss_pred             C-----------CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHh-CCCChhHHH
Q 004984          542 S-----------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLES-DAPKGVLYF  608 (721)
Q Consensus       542 ~-----------P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l-~P~~~~~~~  608 (721)
                      -           |.+..            .+...  ..+.+..|+.......+.++.+ |..++.+|+.. .+.....|.
T Consensus       408 l~~~~~~~~~~~p~~~~------------~~~~~--~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNES------------AINQL--KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHSTTCHH------------HHHHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHhhhhhhccCcchh------------hhhhh--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence            2           43200            00000  0011122333333222223333 57799999998 556678888


Q ss_pred             HHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHhhcc
Q 004984          609 RQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS---FEAFFLKAYALADS  684 (721)
Q Consensus       609 ~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~---~~a~~~~~~~~~~~  684 (721)
                      ..|.+..+.|. ++.|...|+++++..|+++..+...+..+...|+.+.|-+.|++|+...|+   ....+.+-+.+.-.
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            88877777765 899999999999999999998878888888899999999999999999884   44666666666666


Q ss_pred             CCCCCchhhHHHHHHHhhcCCCC
Q 004984          685 SQDSSCSSTVVSLLEDALKCPSD  707 (721)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~  707 (721)
                      -=|.+....|.+-+-+  .||.+
T Consensus       554 ~G~~~~~~~v~~R~~~--~~P~~  574 (679)
T 4e6h_A          554 VGSLNSVRTLEKRFFE--KFPEV  574 (679)
T ss_dssp             TCCSHHHHHHHHHHHH--HSTTC
T ss_pred             cCCHHHHHHHHHHHHH--hCCCC
Confidence            6566554444444433  46765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.67  E-value=2.8e-07  Score=85.63  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCC
Q 004984          397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP  476 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP  476 (721)
                      +++++|+.+|++|.+.++..+.  +|.+|...+...+|+                              ..|++|.+.  
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~------------------------------~~~~~Aa~~--   54 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLF------------------------------QYLSKACEL--   54 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHH------------------------------HHHHHHHHT--
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHH------------------------------HHHHHHHcC--
Confidence            5788999999999999888877  887777666555544                              445555554  


Q ss_pred             CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 004984          477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPD  544 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~  544 (721)
                      .++.+++++|.+|..    .+++++|+..|++|.+. -++.+.+++|.+|..    .+|+++|+..|++|.+....
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            567888888888888    78888888888888865 347777888888888    88888888888888887543

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.4e-08  Score=90.90  Aligned_cols=85  Identities=16%  Similarity=0.127  Sum_probs=73.1

Q ss_pred             hhcCCHhhHHHHHHHhcccCChhHHHHHHHHHHhhccc--------CCChHHHHHHhccccccchhhhcccchhhHHHHH
Q 004984          280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLL  351 (721)
Q Consensus       280 ~~l~~~~n~~~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l  351 (721)
                      +.+ +++||+.++.+|..|+++.|.+.|.+|+.+||.+        .|+.+++.++++++        +..|..++.+++
T Consensus         6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av~   76 (105)
T 2eqx_A            6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAIE   76 (105)
T ss_dssp             CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHHH
T ss_pred             ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHHH
Confidence            345 4799999999999999999999999999988865        67888888999885        567888999999


Q ss_pred             HHhhhcCCCCchhHHHHHHHHH
Q 004984          352 SEVAMNLDPRSDKTVCFLERLL  373 (721)
Q Consensus       352 ~wV~~d~~~rs~~~~~LLe~Lv  373 (721)
                      +||.+++..|..++.+||+..+
T Consensus        77 ~Wv~~d~~~R~~~~~~Ll~~VR   98 (105)
T 2eqx_A           77 AWINFNKEEREAFAESLRTSLK   98 (105)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCHHHHHHHHHHHHHHHH
Confidence            9999998888889999998743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.60  E-value=1.7e-07  Score=81.76  Aligned_cols=72  Identities=13%  Similarity=0.007  Sum_probs=68.4

Q ss_pred             hCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004984          599 SDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS  670 (721)
Q Consensus       599 l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~  670 (721)
                      .+|.++++++.+|.++...+.   .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            379999999999999988777   689999999999999999999999999999999999999999999999987

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.60  E-value=2.7e-07  Score=104.28  Aligned_cols=128  Identities=9%  Similarity=-0.029  Sum_probs=101.6

Q ss_pred             HHHhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCCh
Q 004984          392 VRLLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG  461 (721)
Q Consensus       392 ~~~~~g~y~eA~~~f~~AL~~-------~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~  461 (721)
                      .+..+|+|++|+..|++|+++       +|.   .++.++|.+|..+|++++|...+.+++++.                
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~----------------  381 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY----------------  381 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------------
Confidence            455789999999999999987       233   357789999999999999999887666553                


Q ss_pred             hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-HH---HHHHHHHHHHhcCCHHHH
Q 004984          462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-LE---CLELRFCFFLALEDYQAA  531 (721)
Q Consensus       462 ~eAl~d~~kAie-LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~~---~~~~R~~~~~~lgd~eeA  531 (721)
                             .+.+- -.|+-+..|+|+|.+|..+|++++|+..|++|+++     -|+ |.   ...+++.++.++|++++|
T Consensus       382 -------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a  454 (490)
T 3n71_A          382 -------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN  454 (490)
T ss_dssp             -------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence                   22222 13445678999999999999999999999999986     354 43   335577899999999999


Q ss_pred             HHHHHHHHhhC
Q 004984          532 LCDVQAILTLS  542 (721)
Q Consensus       532 l~d~~kal~L~  542 (721)
                      ...|+++.+-.
T Consensus       455 e~~~~~~~~~~  465 (490)
T 3n71_A          455 EFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997743

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.55  E-value=7e-07  Score=82.86  Aligned_cols=82  Identities=10%  Similarity=0.002  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRK  660 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~  660 (721)
                      |+..+.++.+.  +++.+++++|.++..    .+++++|+..|++|.+.  .++++++++|.++..    .+++++|+..
T Consensus        44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~  119 (138)
T 1klx_A           44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT  119 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence            47778888776  788999999999999    89999999999999987  689999999999999    9999999999


Q ss_pred             HHHHHhcCCCHHHH
Q 004984          661 AEESIQMKRSFEAF  674 (721)
Q Consensus       661 ye~Ai~i~~~~~a~  674 (721)
                      |++|.+.......+
T Consensus       120 ~~~Aa~~g~~~A~~  133 (138)
T 1klx_A          120 FEKACRLGSEDACG  133 (138)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHH
Confidence            99999986544333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.44  E-value=6.4e-07  Score=101.18  Aligned_cols=131  Identities=10%  Similarity=-0.021  Sum_probs=103.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 004984          485 RASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS  555 (721)
Q Consensus       485 rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~  555 (721)
                      .+..+..+|+|++|+..++++|++     -|+ +   ..+.++|.+|..+|+|++|+..|++++++--..          
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----------  384 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL----------  384 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------
Confidence            344677899999999999999986     233 3   446778999999999999999999999852110          


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--
Q 004984          556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--  633 (721)
Q Consensus       556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--  633 (721)
                                           +       +            ...|.-+..++|+|.++..+|++++|+..|++|+++  
T Consensus       385 ---------------------l-------G------------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          385 ---------------------Y-------H------------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             ---------------------S-------C------------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------c-------C------------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                                 0       0            012334556899999999999999999999999975  


Q ss_pred             ---CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          634 ---AASD---HERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       634 ---~P~~---~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                         -|++   ++.+.+++.++..+|.+++|...|.+|.
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4555   5566789999999999999999999985

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.44  E-value=5.3e-07  Score=85.83  Aligned_cols=89  Identities=12%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~-P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      ..|+..++.+|.+.++.|+.|.+|.+.+   ..++|+..++..++.+ | ++.+.+|++|..+|++|+|++|....++++
T Consensus        19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3678888999999999999999999999   5569999999999999 7 679999999999999999999999999999


Q ss_pred             hcCCCHH-HHHHHHH
Q 004984          666 QMKRSFE-AFFLKAY  679 (721)
Q Consensus       666 ~i~~~~~-a~~~~~~  679 (721)
                      +++|++. |-.||-.
T Consensus        99 ~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           99 QTEPQNNQAKELERL  113 (152)
T ss_dssp             HHCTTCHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHH
Confidence            9999987 8777654

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.41  E-value=6.6e-07  Score=79.20  Aligned_cols=80  Identities=20%  Similarity=0.311  Sum_probs=69.8

Q ss_pred             cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC--------------C
Q 004984          183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L  247 (721)
Q Consensus       183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~--------------l  247 (721)
                      -|+|+- +|+.|.++|.+ |..|.+++.||.+++ |+....|.|+  +|+..+|+.+++|+|...              .
T Consensus         5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w   80 (99)
T 1hv2_A            5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF   80 (99)
T ss_dssp             EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred             EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence            377777 89999999997 899999999999887 7666789999  599999999999999743              2


Q ss_pred             CCCCHHHHHHHHHHhhhcCh
Q 004984          248 NGVTPNLLLEILIFANKFCC  267 (721)
Q Consensus       248 ~~i~~~~v~~LL~aAd~~~v  267 (721)
                      . ++.+.+.+|+.||+++++
T Consensus        81 ~-vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           81 E-IPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             C-CCHHHHHHHHHHHHHHCC
T ss_pred             c-CCHHHHHHHHHHHHHhCc
Confidence            3 778999999999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.41  E-value=1.2e-06  Score=77.36  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=70.3

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF  674 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~  674 (721)
                      ++.-++.+|..+...|+++.|+.+|+.|++..       +..++.+.++|.+++.+|++++|+..+++|++++|+.. +.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            46678999999999999999999999999974       45688999999999999999999999999999999998 76


Q ss_pred             HHHHHH
Q 004984          675 FLKAYA  680 (721)
Q Consensus       675 ~~~~~~  680 (721)
                      +++++.
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            777643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.40  E-value=7.6e-06  Score=85.64  Aligned_cols=84  Identities=12%  Similarity=0.035  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh-cCCHHHH
Q 004984          462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTK-----QNVEAALAEINRILGFKLA--LECLELRFCFFLA-LEDYQAA  531 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~--~~~ay~~rg~~l~~l-----g~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~-lgd~eeA  531 (721)
                      .+|...++||++|||+  +..+|..+|.+|...     |+.+.|...|+|||+++|+  .+..+..|..+.. +||+++|
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            7888999999999999  566999999999995     9999999999999999994  6777778877766 5999999


Q ss_pred             HHHHHHHHhhCCCc
Q 004984          532 LCDVQAILTLSPDY  545 (721)
Q Consensus       532 l~d~~kal~L~P~~  545 (721)
                      .+.+++|+..+|..
T Consensus       260 ~~~L~kAL~a~p~~  273 (301)
T 3u64_A          260 DEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCGGG
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999884

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.37  E-value=0.00017  Score=81.25  Aligned_cols=344  Identities=5%  Similarity=-0.105  Sum_probs=192.4

Q ss_pred             cccchhhHHHHHHHhhhcCCCCchhHHHHHHHHHH-hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c
Q 004984          340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE-SAE-TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H  414 (721)
Q Consensus       340 v~~~~~~~~~~l~wV~~d~~~rs~~~~~LLe~Lv~-~a~-~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~  414 (721)
                      +.+..-++..++.|.-.   ...+.+..++++++. +|. +-|.....+...     .....+.....|+.|+.. |  +
T Consensus        11 i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-----~~~~~~~i~~~fe~al~~vg~d~   82 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-----VSQKKFKLYEVYEFTLGQFENYW   82 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-----HC----CTHHHHHHHHHHSTTCT
T ss_pred             hHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHcCCCc
Confidence            56788889999998843   346677889999886 442 223323332221     111335567789999875 3  2


Q ss_pred             hhhHhhHHHHHH------HhCCHHHHHHHHHHHHhcCCCc--HHHHHHHhh----c-------------CChhHHHHHHH
Q 004984          415 IYSIAGLARLGY------IKGHKLWAYEKLNSVISSVTPL--GWMYQERSL----Y-------------CEGDKRWEDLD  469 (721)
Q Consensus       415 ~~A~~~lg~~~~------~~G~~~~A~~~~~~aI~~~~~~--~~ay~~rg~----~-------------~~~~eAl~d~~  469 (721)
                      ...-....-+.+      .+|+.+.+.+.|.+||.. |..  ...|..-..    +             ..+..|...|.
T Consensus        83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~  161 (493)
T 2uy1_A           83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ  161 (493)
T ss_dssp             TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence            221222222222      346788899999999994 431  111110000    0             01123344445


Q ss_pred             HHHhcCCC-ChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          470 KATALDPT-LSYPYMYRASSLMTKQN---------VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       470 kAieLdP~-~~~ay~~rg~~l~~lg~---------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      .+...-|. ....|..  .+-.+.++         .+.....|+++|...|. +..|..-+..+...|+.++|..-|++|
T Consensus       162 ~~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA  239 (493)
T 2uy1_A          162 QIQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG  239 (493)
T ss_dssp             HHHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44443332 2223433  22223332         33467788999988885 677777777778889999999999999


Q ss_pred             HhhCCCchhhhhhHHHH----HHHHHHHHhhh-----------hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC
Q 004984          539 LTLSPDYRMFEGRVAAS----QLHMLVREHID-----------NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP  602 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~----~~~~~l~~~~~-----------~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~  602 (721)
                      +.. |........-+..    ...+.+.....           .......|.+......+.++.. |-.++.+| ...+.
T Consensus       240 i~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~  317 (493)
T 2uy1_A          240 IEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV  317 (493)
T ss_dssp             HHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred             HhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence            999 8864311100000    00001111100           0001122333332222223333 56688999 33333


Q ss_pred             ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 004984          603 KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL  681 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~  681 (721)
                      ....|...|.+....| .++.|...|+++++.-|++++.+...+..+...|+.+.|-..|+++..    ...++.+-..+
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~f  393 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEY  393 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            5567777777777777 599999999999999999998777777777888999999999999832    23444444444


Q ss_pred             hccCCCCCchhhHHHHHHHhhc
Q 004984          682 ADSSQDSSCSSTVVSLLEDALK  703 (721)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~  703 (721)
                      .-+.=|   -.++-.++|.+++
T Consensus       394 E~~~G~---~~~~r~v~~~~~~  412 (493)
T 2uy1_A          394 EFMVGS---MELFRELVDQKMD  412 (493)
T ss_dssp             HHHHSC---HHHHHHHHHHHHH
T ss_pred             HHHCCC---HHHHHHHHHHHHH
Confidence            433223   2344455566654

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.33  E-value=2.8e-06  Score=82.49  Aligned_cols=97  Identities=24%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------
Q 004984          183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS-----------  246 (721)
Q Consensus       183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-----------  246 (721)
                      -|+|+- +|+.|.+++.+ |..|..++.|+.+.-.    +.....|.|+  +|+..+|+.|++|++...           
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~~   84 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDDD   84 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence            467766 78999999998 7889999999975332    2334789998  599999999999998743           


Q ss_pred             --------------CCCCCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          247 --------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       247 --------------l~~i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                                    +. ++.+.+.+|+.||++|++..|.+.|++.++..+.
T Consensus        85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik  134 (169)
T 3v7d_A           85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR  134 (169)
T ss_dssp             ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence                          23 6678899999999999999999999999998875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.31  E-value=4.8e-06  Score=79.23  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg---~~~eAl~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                      ..+...|+++++.+|...++.++.|.++...+   +.++||..++.+++.+ | + .+++|++|..+.++|+|++|++.+
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            55667789999999999999999999999999   6779999999999998 7 3 789999999999999999999999


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREHI  565 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~~  565 (721)
                      +++++++|++.      .+..+...++...
T Consensus        95 ~~lL~ieP~n~------QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           95 RGLLQTEPQNN------QAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHCTTCH------HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCH------HHHHHHHHHHHHH
Confidence            99999999993      3555555444443

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.30  E-value=7.1e-07  Score=78.53  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=63.9

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------CCC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG  249 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-----------l~~  249 (721)
                      |+|+- +|+.|.++|.+ |..|.+++.||.+  .+.|+....|.|+  +|+..+|+.+++|+|...           .. 
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~-   78 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP-   78 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence            56666 89999999997 8999999999985  3467777899999  599999999999998743           23 


Q ss_pred             CCHHHHHHHHHHhhhcCh
Q 004984          250 VTPNLLLEILIFANKFCC  267 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v  267 (721)
                      ++.+.+.+|+.||+++++
T Consensus        79 vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           79 IAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCTTTHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHhCc
Confidence            778899999999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=2.8e-06  Score=73.97  Aligned_cols=71  Identities=11%  Similarity=0.035  Sum_probs=61.9

Q ss_pred             CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          475 DPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      +|+++..+..+|.+++..++   .++|...+++||+++|+ +.....+|..+...|+|++|+..++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68889999999999976665   68999999999999996 7888888999999999999999999999999883

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.12  E-value=1.1e-05  Score=72.34  Aligned_cols=94  Identities=11%  Similarity=0.046  Sum_probs=77.2

Q ss_pred             cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHH
Q 004984          183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL  256 (721)
Q Consensus       183 DV~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~  256 (721)
                      -|+|.|||+.|...+..|.... .+|.+||.++..    .....++-|.   -+|..|+.+|+|+.||++. ++.+ ...
T Consensus         7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l~-~p~~~~~~   82 (107)
T 3drz_A            7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEE   82 (107)
T ss_dssp             EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred             EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence            3789999999999999998775 478999987531    1234567775   8999999999999999997 6543 357


Q ss_pred             HHHHHhhhcChhhHHHHHHHHHHh
Q 004984          257 EILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       257 ~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      .++.-|++|+++.|++.|.+.+..
T Consensus        83 ~l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           83 GVLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhc
Confidence            899999999999999999988753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.10  E-value=0.00015  Score=81.70  Aligned_cols=78  Identities=15%  Similarity=0.031  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-HHHHHHHHHHHHhc---CCCcHHHHHHHhhcC--------ChhH
Q 004984          397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-KLWAYEKLNSVISS---VTPLGWMYQERSLYC--------EGDK  463 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~-~~~~A~~~lg~~~~~~G~-~~~A~~~~~~aI~~---~~~~~~ay~~rg~~~--------~~~e  463 (721)
                      |+++.|...|++|+.. .....|.....-....|+ .+.....|..|+..   +++.+..|..--.+.        ..+.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            7777777778877775 333334333332222332 22334455555543   444455444433221        1144


Q ss_pred             HHHHHHHHHhc
Q 004984          464 RWEDLDKATAL  474 (721)
Q Consensus       464 Al~d~~kAieL  474 (721)
                      +...|++||..
T Consensus       108 vR~iy~rAL~~  118 (493)
T 2uy1_A          108 IRNGYMRALQT  118 (493)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHhC
Confidence            55566666664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.97  E-value=1.4e-05  Score=88.72  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=70.7

Q ss_pred             cCChhHHHHHHHHHHh-----cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHH
Q 004984          458 YCEGDKRWEDLDKATA-----LDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFC  520 (721)
Q Consensus       458 ~~~~~eAl~d~~kAie-----LdP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~  520 (721)
                      ++++++|+..|++|++     |.|++   +..+.++|.+|..+|+|++|+..++++|++     -|+ |   ..++++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3445777777777766     34554   577899999999999999999999999986     233 3   34678999


Q ss_pred             HHHhcCCHHHHHHHHHHHHh-----hCCCc
Q 004984          521 FFLALEDYQAALCDVQAILT-----LSPDY  545 (721)
Q Consensus       521 ~~~~lgd~eeAl~d~~kal~-----L~P~~  545 (721)
                      +|..+|++++|+..|++|++     +.|++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H  420 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDH  420 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999998     45666

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.95  E-value=1.6e-05  Score=88.32  Aligned_cols=79  Identities=11%  Similarity=0.060  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHh-----CCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcC
Q 004984          589 SLSVIYQMLES-----DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTS  652 (721)
Q Consensus       589 al~~~~qaL~l-----~P~~---~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--------~P~~~ea~~~~G~~Ly~~G  652 (721)
                      |+..++++|++     .|.+   +..+.|+|.++..+|++++|+..+++|+++        .|+-+..++|+|.++..+|
T Consensus       317 A~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg  396 (433)
T 3qww_A          317 LLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLE  396 (433)
T ss_dssp             HHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcc
Confidence            68899999985     4555   456899999999999999999999999976        4556677999999999999


Q ss_pred             CHHHHHHHHHHHHhc
Q 004984          653 HCEEGLRKAEESIQM  667 (721)
Q Consensus       653 ~~deAl~~ye~Ai~i  667 (721)
                      +++||+..|+||++|
T Consensus       397 ~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          397 NKAAGEKALKKAIAI  411 (433)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999999987

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.88  E-value=8.1e-05  Score=65.39  Aligned_cols=74  Identities=15%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004984          384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE  454 (721)
Q Consensus       384 la~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~  454 (721)
                      ...+.+|..+...|+|..|+.+|++|++..         ....+..+|.+++++|+++.|+..+++++++.|+...+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            345789999999999999999999999861         34457788888888888888888888888777777777666


Q ss_pred             Hhh
Q 004984          455 RSL  457 (721)
Q Consensus       455 rg~  457 (721)
                      ++.
T Consensus        86 ~~~   88 (104)
T 2v5f_A           86 LKY   88 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.83  E-value=7.6e-05  Score=82.77  Aligned_cols=92  Identities=8%  Similarity=-0.038  Sum_probs=72.7

Q ss_pred             HhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhH
Q 004984          394 LLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK  463 (721)
Q Consensus       394 ~~~g~y~eA~~~f~~AL~~-------~~~---~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~e  463 (721)
                      ..+|+|++|+..|++++++       +|.   .++.++|.+|..+|++++|+..+.++++++                  
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~------------------  359 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY------------------  359 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH------------------
Confidence            3568999999999999976       232   357789999999999999998887666543                  


Q ss_pred             HHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004984          464 RWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF  508 (721)
Q Consensus       464 Al~d~~kAi-eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l  508 (721)
                           .+.+ .-.|+-+..|+|+|.+|..+|++++|+..|+||+++
T Consensus       360 -----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          360 -----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             -----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence                 3332 224455678899999999999999999999999975

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.80  E-value=3.2e-05  Score=69.82  Aligned_cols=81  Identities=23%  Similarity=0.371  Sum_probs=63.5

Q ss_pred             cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhccCC-----------CC
Q 004984          183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN  248 (721)
Q Consensus       183 DV~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~-----------l~  248 (721)
                      -|+|+- +|..|.+++. .|..|..++.|+.+  .+.|+....|.|+  +|+..+|+.|++|++...           ..
T Consensus        18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~   94 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP   94 (112)
T ss_dssp             EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred             EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence            467764 8999999999 47899999999985  3456666789999  599999999999998643           23


Q ss_pred             CCCHHHHHHHHHHhhhcCh
Q 004984          249 GVTPNLLLEILIFANKFCC  267 (721)
Q Consensus       249 ~i~~~~v~~LL~aAd~~~v  267 (721)
                       ++.+.+.+|+.||++|++
T Consensus        95 -vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           95 -IAPEIALELLMAANFLDC  112 (112)
T ss_dssp             -CCHHHHHHHHHHHHHHTC
T ss_pred             -cCHHHHHHHHHHHHHhCc
Confidence             788999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.73  E-value=9.6e-05  Score=81.95  Aligned_cols=85  Identities=7%  Similarity=-0.129  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATAL-----DPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLA  524 (721)
Q Consensus       462 ~eAl~d~~kAieL-----dP~~---~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~  524 (721)
                      ++|+..|++++++     .|++   +..+.++|.+|..+|++++|+..+.++|++     -|+ |   ..++++|.+|..
T Consensus       304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~  383 (429)
T 3qwp_A          304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH  383 (429)
T ss_dssp             HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            4444555555442     3444   567899999999999999999999999986     233 4   345779999999


Q ss_pred             cCCHHHHHHHHHHHHh-----hCCCch
Q 004984          525 LEDYQAALCDVQAILT-----LSPDYR  546 (721)
Q Consensus       525 lgd~eeAl~d~~kal~-----L~P~~~  546 (721)
                      +|++++|+..|++|++     +.|+++
T Consensus       384 ~g~~~eA~~~~~~Al~i~~~~lG~~Hp  410 (429)
T 3qwp_A          384 QGMFPQAMKNLRLAFDIMRVTHGREHS  410 (429)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999998     567763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.69  E-value=0.00011  Score=67.58  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=81.4

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee---Al~~~~~Al~l~-P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      -|+.++..++.+.++.|+.|.+|.+-+.+.+   ++..++..++-+ | ..-+.+|++|...|++|+|++|....+..++
T Consensus        23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5777888899999999999999999998888   999999999988 5 6889999999999999999999999999999


Q ss_pred             cCCCHH-HHHHHHHH
Q 004984          667 MKRSFE-AFFLKAYA  680 (721)
Q Consensus       667 i~~~~~-a~~~~~~~  680 (721)
                      ++|++. |.-||...
T Consensus       103 ~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A          103 TEPQNNQAKELERLI  117 (126)
T ss_dssp             HCTTCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHH
Confidence            999987 88888654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.42  E-value=0.0015  Score=60.10  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA---ALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV  535 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~e---Al~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~eeAl~d~  535 (721)
                      ..+-..|.+++..++....+-++.|.++...++..+   +|..+...+.-+ | . -++++.++..+.++|+|++|++.+
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            455667888999899999999999999999998877   999999999877 6 2 578899999999999999999999


Q ss_pred             HHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 004984          536 QAILTLSPDYRMFEGRVAASQLHMLVREH  564 (721)
Q Consensus       536 ~kal~L~P~~~~~~~~~~a~~~~~~l~~~  564 (721)
                      +.+|+.+|++.      .|..+...++..
T Consensus        98 ~~lL~~eP~n~------QA~~Lk~~i~~~  120 (126)
T 1nzn_A           98 RGLLQTEPQNN------QAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred             HHHHHhCCCCH------HHHHHHHHHHHH
Confidence            99999999993      355555544443

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=97.11  E-value=0.001  Score=65.84  Aligned_cols=93  Identities=11%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC--C--cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF--M--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE  257 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~--~--Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~  257 (721)
                      |+|.|||..|...+..|.... .+|..||.+..  .  .....++-|.   -+|..|+.||+|+.+|++. ++.+ ....
T Consensus        14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L~-lP~~~~~~~   89 (202)
T 3drx_A           14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEEG   89 (202)
T ss_dssp             EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred             EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence            789999999999999998654 38899998642  1  1124567775   7899999999999999998 6554 3478


Q ss_pred             HHHHhhhcChhhHHHHHHHHHHh
Q 004984          258 ILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       258 LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      ++.-|++|+++.|++.|.+.+..
T Consensus        90 l~eEA~FygL~~Lv~~l~~~i~e  112 (202)
T 3drx_A           90 VLEEAEFYNITSLIKLVKDKIRE  112 (202)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHHHHH
Confidence            99999999999999999998864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.62  E-value=0.021  Score=53.37  Aligned_cols=80  Identities=15%  Similarity=0.064  Sum_probs=71.8

Q ss_pred             CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984          601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF  675 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~  675 (721)
                      +-++...|+.|.+|.+-+..+   +++..++..++-.| +.-+-+|+++...|++|+|++|...-+..++++|++. |--
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            678899999999999977665   79999999999998 5789999999999999999999999999999999987 777


Q ss_pred             HHHHH
Q 004984          676 LKAYA  680 (721)
Q Consensus       676 ~~~~~  680 (721)
                      ||...
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.53  E-value=0.12  Score=58.07  Aligned_cols=153  Identities=10%  Similarity=0.050  Sum_probs=110.7

Q ss_pred             HHHHhccchHHHHHHHHHHHhcc--c-hhhHhhHHHHHHHh---------CCHHHHHHHHHHHHhc--CCCcHHHHHHH-
Q 004984          391 CVRLLRKEYDEAEHLFEAAVNAG--H-IYSIAGLARLGYIK---------GHKLWAYEKLNSVISS--VTPLGWMYQER-  455 (721)
Q Consensus       391 ~~~~~~g~y~eA~~~f~~AL~~~--~-~~A~~~lg~~~~~~---------G~~~~A~~~~~~aI~~--~~~~~~ay~~r-  455 (721)
                      ..+.+.|++++|.+.|++..+.+  | ...|.-+-.++...         |+.+.|.+.|.+..+.  .|+ ...|... 
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI  112 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EATFTNGA  112 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence            34567899999999999987764  2 22333333333332         3367888888877665  333 2222221 


Q ss_pred             ---hhcCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCH
Q 004984          456 ---SLYCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDY  528 (721)
Q Consensus       456 ---g~~~~~~eAl~d~~kAieL--dP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~  528 (721)
                         +..++.++|+..|++..+.  .| +...|+.+-..+...|+.++|...|++..+  +.|+...+...-.++.+.|+.
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence               2335559999999887764  45 567899999999999999999999999887  467877777788889999999


Q ss_pred             HHHHHHHHHHHh--hCCCc
Q 004984          529 QAALCDVQAILT--LSPDY  545 (721)
Q Consensus       529 eeAl~d~~kal~--L~P~~  545 (721)
                      ++|.+.+++..+  ..|+-
T Consensus       192 d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          192 DKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHHHHHHHhCCCcCH
Confidence            999999998876  55764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.53  E-value=0.25  Score=55.53  Aligned_cols=84  Identities=13%  Similarity=0.043  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          590 LSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ  666 (721)
Q Consensus       590 l~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~  666 (721)
                      +.++++|.+.. +-+...|+..=..+.+.|+.++|++.++...+.  .|+ ...+..+=.++.+.|+.++|...+++--+
T Consensus       125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          125 FDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            45555555542 224556666667788899999999999987764  444 55777777788899999999999998765


Q ss_pred             --cCCCHHHH
Q 004984          667 --MKRSFEAF  674 (721)
Q Consensus       667 --i~~~~~a~  674 (721)
                        ++|+-..|
T Consensus       204 ~g~~ps~~T~  213 (501)
T 4g26_A          204 LVRQVSKSTF  213 (501)
T ss_dssp             HTSSBCHHHH
T ss_pred             hCCCcCHHHH
Confidence              57877654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.27  E-value=0.019  Score=53.01  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 004984          601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF  675 (721)
Q Consensus       601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~  675 (721)
                      .-++...|+.|.+|.+-+..+   .++..+...++.+| ..-|-+|+++...|++|+|++|...-++.++++|++. |--
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            346789999999999977663   69999999999999 4689999999999999999999999999999999998 777


Q ss_pred             HHHH
Q 004984          676 LKAY  679 (721)
Q Consensus       676 ~~~~  679 (721)
                      ||..
T Consensus       117 Lk~~  120 (134)
T 3o48_A          117 LKSM  120 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.87  E-value=3.3  Score=47.69  Aligned_cols=282  Identities=9%  Similarity=-0.040  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHH
Q 004984          385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR  464 (721)
Q Consensus       385 a~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eA  464 (721)
                      ..+.-+...+..|++..+...-. .+.-.+...+.....+...++..  ....+...|..+|+.+.+-.-|..+   .++
T Consensus         8 ~~~~~a~~a~~~~~~~~~~~l~~-~l~~~pL~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~---l~~   81 (618)
T 1qsa_A            8 SRYAQIKQAWDNRQMDVVEQMMP-GLKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRF---VNE   81 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSG-GGTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH-hhcCCCcHHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHH---HHH
Confidence            34455556666777766644322 12223333333222223323321  2336667788899887776666544   222


Q ss_pred             H------HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHHH
Q 004984          465 W------EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELRF  519 (721)
Q Consensus       465 l------~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~~----------------~~~~~R~  519 (721)
                      +      ..|-.--.-.|+....-.+.+.++...|+-.+|.....++.---   |+.                +.+..|.
T Consensus        82 l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~  161 (618)
T 1qsa_A           82 LARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERI  161 (618)
T ss_dssp             HHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            2      23322222247788888888999999999988988888877542   221                1122233


Q ss_pred             HHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhhh------H-HHHHHHHHHHHhhhhhhHHHH------
Q 004984          520 CFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEGR------V-AASQLHMLVREHIDNWTIADC------  573 (721)
Q Consensus       520 ~~~~~lgd~eeAl~d~~k-------------al~L~P~~~~~~~~------~-~a~~~~~~l~~~~~~~~~A~~------  573 (721)
                      ......|+...|......             ++.-+|........      . ......+..+....+.+.|..      
T Consensus       162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~  241 (618)
T 1qsa_A          162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLA  241 (618)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            445556666555443322             33344543221100      0 000001111111112222211      


Q ss_pred             -------------HHhhhhcccccc-ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 004984          574 -------------WLQLYDRWSSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE  639 (721)
Q Consensus       574 -------------~~~l~~~~~~~d-d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e  639 (721)
                                   |..+.-.....+ +.++...++++....+.+....+..+.++ +.|+++.|...+++.-.-.++...
T Consensus       242 ~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r  320 (618)
T 1qsa_A          242 QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDE  320 (618)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHh
Confidence                         111111112223 44466677777765555544445555554 679999999999876665556788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984          640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF  674 (721)
Q Consensus       640 a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~  674 (721)
                      +.|.+|-++..+|+-++|-..|+++.. .++|=.+
T Consensus       321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~~fYg~  354 (618)
T 1qsa_A          321 WRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPM  354 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhc-CCChHHH
Confidence            899999999999999999999999987 5777443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.82  E-value=0.19  Score=46.97  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=69.9

Q ss_pred             CCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 004984          475 DPTLSYPYMYRASSLMTKQNVE---AALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE  549 (721)
Q Consensus       475 dP~~~~ay~~rg~~l~~lg~~~---eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~  549 (721)
                      ++-.+.+-++.|-++....+.+   ++|..+...+.-.|.  -++++.++..+.++|+|++|.+..+..|+.+|+|    
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n----  110 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN----  110 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC----
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----
Confidence            4667889999999999888754   799999999988884  5889999999999999999999999999999999    


Q ss_pred             hhHHHHHHHHHHHHh
Q 004984          550 GRVAASQLHMLVREH  564 (721)
Q Consensus       550 ~~~~a~~~~~~l~~~  564 (721)
                        ..+..+...++..
T Consensus       111 --~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A          111 --KQVGALKSMVEDK  123 (144)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHH
Confidence              3455555544443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.72  E-value=0.083  Score=48.73  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             ChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 004984          478 LSYPYMYRASSLMTKQNV---EAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV  552 (721)
Q Consensus       478 ~~~ay~~rg~~l~~lg~~---~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~  552 (721)
                      .+.+-++.|-++...++.   .++|..+...+.-.|.  -++++.++..+.++|+|++|.+..+++++.+|+|      .
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N------~  112 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN------K  112 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC------H
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC------H
Confidence            467888888888887765   4789999999988884  6889999999999999999999999999999999      4


Q ss_pred             HHHHHHHHHHHhhh
Q 004984          553 AASQLHMLVREHID  566 (721)
Q Consensus       553 ~a~~~~~~l~~~~~  566 (721)
                      .|..+...++..+.
T Consensus       113 QA~~Lk~~Ie~ki~  126 (134)
T 3o48_A          113 QVGALKSMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            45566555555444

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=95.60  E-value=0.013  Score=53.57  Aligned_cols=86  Identities=12%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984          183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE  257 (721)
Q Consensus       183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~  257 (721)
                      =|+|.|||..|...+..|....   .+||...-    ......++-|.   =++..|+.||+|+.||++. ++.+ .+..
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~   86 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA   86 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred             EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence            4889999999999999996542   23454311    11234567775   6999999999999999998 6654 4789


Q ss_pred             HHHHhhhcChhhHH-HHHH
Q 004984          258 ILIFANKFCCERLK-DACD  275 (721)
Q Consensus       258 LL~aAd~~~v~~L~-~~C~  275 (721)
                      ++.-|++|+++.+. ..|+
T Consensus        87 l~~Ea~fy~i~~l~l~~cC  105 (124)
T 1s1g_A           87 YDDELAFYGILPEIIGDCC  105 (124)
T ss_dssp             HHHHHHHTTCCGGGBCHHH
T ss_pred             HHHHHHHcCCChHHHHHHH
Confidence            99999999999873 5544

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=95.53  E-value=0.01  Score=53.60  Aligned_cols=84  Identities=10%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI  260 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~-~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~LL~  260 (721)
                      |+|.|||..|...+..|.... ..+.+||.+.. ......++-|.   -+|..|+.||+|+.||++. ++.+ .+..++.
T Consensus         7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~   82 (115)
T 3kvt_A            7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE   82 (115)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred             EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence            889999999999999997653 35666776432 12344677776   7899999999999999997 6543 5788999


Q ss_pred             HhhhcChhhHH
Q 004984          261 FANKFCCERLK  271 (721)
Q Consensus       261 aAd~~~v~~L~  271 (721)
                      -|++|+++...
T Consensus        83 Ea~fy~i~~~~   93 (115)
T 3kvt_A           83 ELEFWGLDSNQ   93 (115)
T ss_dssp             HHHHHTCCGGG
T ss_pred             HHHHhCCChHH
Confidence            99999999754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.15  E-value=0.87  Score=49.25  Aligned_cols=66  Identities=6%  Similarity=-0.094  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCHHH
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-------QMKRSFEA  673 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai-------~i~~~~~a  673 (721)
                      ..++.++..+|++++|+..++++++.+|-+-.++..+=.+|+..|+..+|++.|++.-       .+.|+-+-
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3466778899999999999999999999999999999999999999999999998864       46888883

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=95.08  E-value=0.0088  Score=53.12  Aligned_cols=86  Identities=14%  Similarity=0.120  Sum_probs=64.3

Q ss_pred             EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI  258 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~L  258 (721)
                      |+|.|||..|...+..|....   .+||...-    ......++-|.   =+|..|+.||+|+.||++. ++++ .+..+
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~-~p~~~~~~~l   74 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAY   74 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence            789999999999999997543   23454411    11233567776   6899999999999999997 6544 47889


Q ss_pred             HHHhhhcChhhHH-HHHHH
Q 004984          259 LIFANKFCCERLK-DACDR  276 (721)
Q Consensus       259 L~aAd~~~v~~L~-~~C~~  276 (721)
                      +.-|++|+++.+. ..|+.
T Consensus        75 ~~Ea~fy~i~~l~~~~cc~   93 (105)
T 1nn7_A           75 DEELAFFGLIPEIIGDCCY   93 (105)
T ss_dssp             HHHHHHHTCCSCCBCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHH
Confidence            9999999999863 55543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.85  E-value=0.36  Score=45.52  Aligned_cols=105  Identities=10%  Similarity=-0.042  Sum_probs=63.1

Q ss_pred             HHhccchhhHhhHHHHHHHhCCH------HHHHHHHHHHHhcCCCcH--------HHHHHH---hhcCChhHHHHHHHHH
Q 004984          409 AVNAGHIYSIAGLARLGYIKGHK------LWAYEKLNSVISSVTPLG--------WMYQER---SLYCEGDKRWEDLDKA  471 (721)
Q Consensus       409 AL~~~~~~A~~~lg~~~~~~G~~------~~A~~~~~~aI~~~~~~~--------~ay~~r---g~~~~~~eAl~d~~kA  471 (721)
                      .+..++.+.+..........|++      +.-.+.|++||+.-|+..        ..|.+-   -...+.++|...|+.|
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34445555666555555666777      666677777777665421        111110   0113336777777777


Q ss_pred             HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE  513 (721)
Q Consensus       472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~  513 (721)
                      +.+..+++..|...|.--.++|+...|...+.+||++.|.+.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            777777777777777777777777777777777777777543

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=94.77  E-value=0.019  Score=53.68  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHH
Q 004984          183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE  257 (721)
Q Consensus       183 DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~  257 (721)
                      =|+|.|||..|...+..|....   .+||...-+    .....++-|.   =++..|+.||+|+.||++. ++.+ .+..
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~  108 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA  108 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred             EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence            4889999999999999997532   345544111    1234567776   6999999999999999997 6554 4889


Q ss_pred             HHHHhhhcChhhH-HHHHH
Q 004984          258 ILIFANKFCCERL-KDACD  275 (721)
Q Consensus       258 LL~aAd~~~v~~L-~~~C~  275 (721)
                      ++.-|++|+|+.+ +..|+
T Consensus       109 l~eEa~fy~i~~l~l~~CC  127 (140)
T 2nz0_B          109 YDDELAFYGILPEIIGDCC  127 (140)
T ss_dssp             HHHHHHHHTCCGGGBCTTT
T ss_pred             HHHHHHHcCCChHHHHHHH
Confidence            9999999999987 34443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.77  E-value=0.087  Score=50.45  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC---------------
Q 004984          462 DKRWEDLDKATALDPTLS---------YPYMYRASSLMTKQNVEAALAEINRILGFK------LA---------------  511 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~---------~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~------P~---------------  511 (721)
                      +.|+.-.+.++.+..++.         ..+..+|.++...|+|..|...|++||.+.      |+               
T Consensus        37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~  116 (167)
T 3ffl_A           37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ  116 (167)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc
Confidence            666665555555543333         478899999999999999999999998762      11               


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          512 -----LECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       512 -----~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                           .+.-+..+.||.++|++++|+...+.+
T Consensus       117 ~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          117 CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                 133345567999999999999987764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.61  E-value=0.16  Score=48.55  Aligned_cols=111  Identities=9%  Similarity=-0.093  Sum_probs=70.9

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc--cchh---------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHH
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIY---------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMY  452 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~---------A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~---~~~ay  452 (721)
                      ..-.......|.|+.|+-..+.++..  ++.+         ++.++|.+++..|+|..|...|.+|+.....   ....+
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~  103 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR  103 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            44455566778888888888887666  2233         5677888899999999998888888775321   11110


Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI  505 (721)
Q Consensus       453 ~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA  505 (721)
                      -..|-.       ..+-..+.+ +...+..+..|.+++++|++++||..+..+
T Consensus       104 ~~~~~~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          104 PSTGNS-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             --------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccccc-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            000000       001111223 556688899999999999999999997753

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=94.32  E-value=0.027  Score=49.49  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=61.6

Q ss_pred             EEEEEcCeEEEeehhhhhcCC-HHHHHhhcC-CCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-CCCCCCCHH-HHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS-APFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL  259 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~-~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-g~l~~i~~~-~v~~LL  259 (721)
                      |+|.|||..|...+..|...- ..+.+||.. ........++-|.   -+|..|+.||+|+.| |++. ++++ .+..++
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~   78 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS   78 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence            789999999999999996431 123334432 1111234677775   789999999999999 8987 5543 578899


Q ss_pred             HHhhhcChhhHH
Q 004984          260 IFANKFCCERLK  271 (721)
Q Consensus       260 ~aAd~~~v~~L~  271 (721)
                      .-|++|+++.+.
T Consensus        79 ~Ea~fy~i~~~~   90 (100)
T 1t1d_A           79 EEIKFYELGENA   90 (100)
T ss_dssp             HHHHHTTCCHHH
T ss_pred             HHHHHcCCCHHH
Confidence            999999998744

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.94  E-value=0.62  Score=50.41  Aligned_cols=60  Identities=12%  Similarity=0.004  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      +...++.++..+|++++|+..+.++++.+|- -..+..+-.++...|+..+|++.|++.-+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455777888899999999999999999995 45555566688899999999998887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.86  E-value=0.61  Score=43.98  Aligned_cols=53  Identities=13%  Similarity=-0.025  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL  641 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~  641 (721)
                      +-.+|+.|+.++...+..|...|..-.+.|....|...+.+|+.+.|...+.+
T Consensus        79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            47789999999999999999999999999999999999999999999877653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.62  E-value=3.2  Score=47.91  Aligned_cols=47  Identities=9%  Similarity=-0.131  Sum_probs=29.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       488 ~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ...++|++++|+...+.    -.+...|...|..+.+.|+++.|+++|.++
T Consensus       661 ~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44556677777665321    123566666777777777777777777765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.23  Score=58.57  Aligned_cols=59  Identities=17%  Similarity=0.013  Sum_probs=54.0

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                      ...+..-++.-|...|+++-|+...++|....|++=..++.++.+|..+|+||.||-..
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            34577788998999999999999999999999999999999999999999999999543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.35  E-value=1.1  Score=46.22  Aligned_cols=129  Identities=13%  Similarity=0.052  Sum_probs=87.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 004984          487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI  565 (721)
Q Consensus       487 ~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~  565 (721)
                      ..+.+.|+.++|++.....|+-+|. .+.=....-++.-.|+++.|..-++.+.+++|++..     .+...+.+++..+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-----~a~~yr~lI~aE~   79 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-----GASQLRHLVKAAQ   79 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----HHHHHHHHHHHHH
Confidence            3567789999999999999999995 554455667888999999999999999999999842     2222244444333


Q ss_pred             hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       566 ~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                      .+-+-.       .....-.-++           +|..-....-.++.....|+.++|.+.-.+|++..|..+
T Consensus        80 ~R~~vf-------aG~~~P~~~g-----------~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           80 ARKDFA-------QGAATAKVLG-----------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHT-------TSCCCEECCC-----------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHH-------cCCCCCCCCC-----------CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            332222       1111111111           122223334466777888999999999999999998754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.17  E-value=3.1  Score=47.94  Aligned_cols=237  Identities=11%  Similarity=-0.025  Sum_probs=141.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---h--hc-CC-hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 004984          422 ARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER---S--LY-CE-GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ  493 (721)
Q Consensus       422 g~~~~~~G~~~~A~~~~~~aI~~~~-~~~~ay~~r---g--~~-~~-~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg  493 (721)
                      +.....+.+.+.|...+.+.....+ +.......+   +  .. .. ..++...+.+++...++....-...+.++ ..|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC
Confidence            4445566688888888776544322 212211111   1  11 11 35677777776655444433333333444 569


Q ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 004984          494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD  572 (721)
Q Consensus       494 ~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~  572 (721)
                      +++.|...|++.-.-.++ +...|-+|.++.++|+.++|...|+++..  +.  .|+|..++..+...       ...  
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~~Lg~~-------~~~--  366 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQRIGEE-------YEL--  366 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHHHTTCC-------CCC--
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHHHcCCC-------CCC--
Confidence            999999999876543223 56667788899999999999999999986  33  25665544443210       000  


Q ss_pred             HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       573 ~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                             .........     ...+..+|     -+.++..|..+|...+|..-.+.+++..  +.+-...++.+....|
T Consensus       367 -------~~~~~~~~~-----~~~~~~~~-----~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~  427 (618)
T 1qsa_A          367 -------KIDKAPQNV-----DSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQ  427 (618)
T ss_dssp             -------CCCCCCSCC-----CCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT
T ss_pred             -------CCCCCChhH-----HhhhccCh-----HHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Confidence                   000000000     01122222     3577888999999999999888877643  2444557788888899


Q ss_pred             CHHHHHHHHHHHHhcC------C--------------CHHHHHHHHHHhhccCCCCCch
Q 004984          653 HCEEGLRKAEESIQMK------R--------------SFEAFFLKAYALADSSQDSSCS  691 (721)
Q Consensus       653 ~~deAl~~ye~Ai~i~------~--------------~~~a~~~~~~~~~~~~~~~~~~  691 (721)
                      .++.++....++-..+      |              .....++.|++.-.|+.||..-
T Consensus       428 ~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~  486 (618)
T 1qsa_A          428 WWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK  486 (618)
T ss_dssp             CHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred             ChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence            9998886655432221      1              1223467778888888888643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.53  E-value=8.3  Score=41.84  Aligned_cols=89  Identities=15%  Similarity=-0.006  Sum_probs=61.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHH
Q 004984          483 MYRASSLMTKQNVEAALAEINRILGF----KLAL---ECLELRFCFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAA  554 (721)
Q Consensus       483 ~~rg~~l~~lg~~~eAl~~~~kAL~l----~P~~---~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~-~~~~~~~~~a  554 (721)
                      .++|..|.+.|+|.+|+..+++.+.-    +...   +.+-....+|..+|++..+.+.|.+|.+.... +..-..++..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37999999999999999999998873    2122   22333456899999999999999999876411 1111223444


Q ss_pred             HHHHHHHHH-hhhhhhHH
Q 004984          555 SQLHMLVRE-HIDNWTIA  571 (721)
Q Consensus       555 ~~~~~~l~~-~~~~~~~A  571 (721)
                      ....|.... ..++|.+|
T Consensus       183 ~~~~Gi~~l~~~rdyk~A  200 (394)
T 3txn_A          183 DLQSGILHAADERDFKTA  200 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHH
T ss_pred             HHHhhHHHHHhccCHHHH
Confidence            555555555 57777777

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.49  E-value=2.8  Score=40.34  Aligned_cols=114  Identities=18%  Similarity=0.089  Sum_probs=84.1

Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCchhh
Q 004984          474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT----LSPDYRMF  548 (721)
Q Consensus       474 LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~----L~P~~~~~  548 (721)
                      |-|..++.-+-++.++.-.|.|..|+-.+.     +.+ .-..+.-..++.+++||..|+...+.+++    .||+-.  
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d--  100 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD--  100 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC--
T ss_pred             HccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--
Confidence            456667777889999999999888876543     333 45567788999999999999999999994    345421  


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH-HHHHHHHHHcCChHHHHHHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-FRQSLLLLRLNCPEAAMRSL  627 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~-~~~g~~L~~lg~~eeAl~~~  627 (721)
                                            ++                     -+..-+||.+-+.+ ...|.++...|..+||++.+
T Consensus       101 ----------------------~~---------------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~  137 (242)
T 3kae_A          101 ----------------------AR---------------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY  137 (242)
T ss_dssp             ----------------------HH---------------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------cc---------------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence                                  11                     12233568887764 55799999999999999999


Q ss_pred             HHHHHhCCCC
Q 004984          628 QLARQHAASD  637 (721)
Q Consensus       628 ~~Al~l~P~~  637 (721)
                      .+...+.|--
T Consensus       138 ~~Sf~~~~lf  147 (242)
T 3kae_A          138 VRSFGKSFLF  147 (242)
T ss_dssp             HHHHHHCCCH
T ss_pred             hhhcCCcccc
Confidence            9999998853

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.16  E-value=0.77  Score=51.56  Aligned_cols=63  Identities=14%  Similarity=-0.043  Sum_probs=34.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +|.+-........|...|++|+.++|+++..++.+|.+....|+.-+|+=.|-||+.-...|+
T Consensus       158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~  220 (497)
T 1ya0_A          158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence            444444444445555556666666666665555566555555555555555555555444444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.95  E-value=1.6  Score=51.51  Aligned_cols=47  Identities=19%  Similarity=0.114  Sum_probs=42.0

Q ss_pred             CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI  505 (721)
Q Consensus       459 ~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kA  505 (721)
                      ++++-|+..-.+|+.+-|..-.+|+.++.+|..+|+|+.|+-.+|-.
T Consensus       351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34488999999999999999999999999999999999999887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.88  E-value=11  Score=43.27  Aligned_cols=110  Identities=9%  Similarity=-0.049  Sum_probs=58.9

Q ss_pred             HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHH
Q 004984          393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT  472 (721)
Q Consensus       393 ~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAi  472 (721)
                      ..+.|++++|.+..   -.++....|..+|..+.+.|+++.|.+.|.++              +++   +.+...|.   
T Consensus       662 ~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~--------------~d~---~~l~~l~~---  718 (814)
T 3mkq_A          662 ALKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA--------------HDL---ESLFLLHS---  718 (814)
T ss_dssp             HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------TCH---HHHHHHHH---
T ss_pred             hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------------cCh---hhhHHHHH---
Confidence            34566666665542   23455666777888888888888887776532              111   22222211   


Q ss_pred             hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004984          473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       473 eLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                        ...+..-...+|......|+++.|...|-+.   . ++   .....+|.+++++++|+.-
T Consensus       719 --~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g-~~---~~a~~~~~~~~~~~~A~~l  771 (814)
T 3mkq_A          719 --SFNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G-DI---QGAKDLLIKSQRFSEAAFL  771 (814)
T ss_dssp             --HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T-CH---HHHHHHHHHTTCHHHHHHH
T ss_pred             --HcCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C-CH---HHHHHHHHHcCChHHHHHH
Confidence              1334455556666666666666665554331   0 11   1122345666666666653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.61  E-value=2.1  Score=43.99  Aligned_cols=60  Identities=15%  Similarity=-0.023  Sum_probs=54.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      -+++-|..++|+......++-+|.|++....+-.+|.-.|+++.|.+..+-+..++|++.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            457788999999999999999999999999999999999999999999999999999988

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.48  E-value=20  Score=44.17  Aligned_cols=134  Identities=13%  Similarity=0.038  Sum_probs=84.6

Q ss_pred             HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHhhcCChhHHHHHHHHH
Q 004984          393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQERSLYCEGDKRWEDLDKA  471 (721)
Q Consensus       393 ~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~-~~~~~ay~~rg~~~~~~eAl~d~~kA  471 (721)
                      ....++++-|.+ +..=+..++. ..+-+|+++...|++++|+..|.+|..-- ....       .. .....+......
T Consensus       822 l~~~~~~~~~~~-l~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-------l~-~~~~~~~~~~~~  891 (1139)
T 4fhn_B          822 LFLFKQYNACMQ-LIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-------QF-AVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHSCTTHHHH-HHHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-------SC-SSHHHHHHHHHT
T ss_pred             HHHhhhHHHHHH-HhhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-------hh-hhhccccccccc
Confidence            444555554433 2222222333 34668999999999999999999875421 1100       00 001122222333


Q ss_pred             HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHH-----HHHHHHHHHHhcCCHHHHHHHHH
Q 004984          472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE-----CLELRFCFFLALEDYQAALCDVQ  536 (721)
Q Consensus       472 ieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P-~~~-----~~~~R~~~~~~lgd~eeAl~d~~  536 (721)
                      .......+..|.....++-+.|.++.++.-...||+..+ +.+     .|.+....+.++|+|++|-....
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            334455567788888899999999999999999999754 322     34555678999999999976554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=81.29  E-value=3.9  Score=45.80  Aligned_cols=60  Identities=15%  Similarity=-0.029  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCF  521 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~-P~~~~~~~R~~~  521 (721)
                      ..|...|.+|+.++|++..+|+.+|.+....|+.-+|+-.|-|++.-. |-+.+..+...+
T Consensus       169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            566777777777777777777777777777777777777777777653 334444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	721
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	5e-04

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
             +L +VV  +  E+    +    A S  F ++       +L          I+P G  I
Sbjct: 22  RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD--PEINPEGFNI 79

Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
           + DF  T  LN +    ++ ++  A     E + D C + + +
Sbjct: 80  LLDFMYTSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 6/144 (4%)

Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGY 426
           +   L +        +    L CV   +   D A   +  A+        +   LA    
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282

Query: 427 IKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED----LDKATALDPTLSYPY 482
            KG    A +  N+ +             +         E+      KA  + P  +  +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 483 MYRASSLMTKQNVEAALAEINRIL 506
              AS L  +  ++ AL      +
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAI 366

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 36/333 (10%), Positives = 82/333 (24%), Gaps = 18/333 (5%)

Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARL-- 424
               ++    +         L  +    +  D + H    A+  N     + + L  +  
Sbjct: 19  ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

Query: 425 ---GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYP 481
                 +  + + +            +       +           +             
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541
                      +  EA    +  I              C F A  +   A+   +  +TL
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198

Query: 542 SPDY---RMFEGRVAASQ------LHMLVREHIDNWTIADCWLQLYDRWSSVDDI-GSLS 591
            P++    +  G V          +   +R    +   A     L   +     I  ++ 
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651
              + +E        Y   +  L        A      A +   +  + L     I  + 
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 652 SHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 683
            + EE +R   +++++   F  A    A  L  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
              L +VV  +  ++    R   A  S  F  + + +      + +        P   + 
Sbjct: 25  AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS-------PKTFQQ 77

Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
           I +++ T +L       L ++L  A     E L++ C + L ++
Sbjct: 78  ILEYAYTATLQ-AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	721
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.89
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.52
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.32
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.16
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.96
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.71
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.64
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.33
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.87
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.83
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	96.23
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.81
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.29
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	89.19
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	87.49
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	87.11
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	86.41

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-30  Score=272.89  Aligned_cols=296  Identities=14%  Similarity=0.070  Sum_probs=251.5

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 004984          361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL  438 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~  438 (721)
                      +.+.+...++++++..++   +..+++.+|.++...|++++|+..|++||+++|  ..++..+|.++..+|++++|+..+
T Consensus        14 ~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~   90 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence            345666777776654442   356788999999999999999999999999854  557888999999999999999888


Q ss_pred             HHHHhcCC--------------------------------------------------------------------CcHH
Q 004984          439 NSVISSVT--------------------------------------------------------------------PLGW  450 (721)
Q Consensus       439 ~~aI~~~~--------------------------------------------------------------------~~~~  450 (721)
                      .+++...|                                                                    +.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (388)
T d1w3ba_          91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV  170 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhH
Confidence            76666444                                                                    3444


Q ss_pred             HHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 004984          451 MYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL  525 (721)
Q Consensus       451 ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l  525 (721)
                      ++..+|.    .+..++|+..+++|++++|+++.+|..+|.++...|++++|+..|++++.++|. +..+..+|.++...
T Consensus       171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  250 (388)
T d1w3ba_         171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC
Confidence            5555443    255589999999999999999999999999999999999999999999999986 77778899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 004984          526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV  605 (721)
Q Consensus       526 gd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~  605 (721)
                      |++++|+..|+++++++|++..      +...++.+.....++++|                  +..+++++...|.++.
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~  306 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPD------AYCNLANALKEKGSVAEA------------------EDCYNTALRLCPTHAD  306 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHH------HHHHHHHHHHHHSCHHHH------------------HHHHHHHHHHCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHhhhccCCccch
Confidence            9999999999999999999843      344444444455555555                  8889999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD  683 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~  683 (721)
                      .++.+|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|++++|++. +|++.|.+|.+
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988 99999998753

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-28  Score=253.29  Aligned_cols=293  Identities=12%  Similarity=0.062  Sum_probs=249.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CC
Q 004984          387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE  460 (721)
Q Consensus       387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~  460 (721)
                      ..+|..+.+.|+|++|++.|+++++..  +..++..+|.++..+|++++|+..|+++++.+|+++.+|..+|..    ++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            357889999999999999999999985  466788999999999999999999999999999998888887653    56


Q ss_pred             hhHHHHHHHHHHhcCC----------------------------------------------------------------
Q 004984          461 GDKRWEDLDKATALDP----------------------------------------------------------------  476 (721)
Q Consensus       461 ~~eAl~d~~kAieLdP----------------------------------------------------------------  476 (721)
                      .++|+..|.++++.+|                                                                
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            6888887776666555                                                                


Q ss_pred             ----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          477 ----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       477 ----~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                          +++.++..+|..+...|++++|+..++++++++|+ ++.+..+|.++...|++++|+..|++++.++|....    
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----  238 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV----  238 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH----
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH----
Confidence                55678888888999999999999999999999986 777888888899999999999999999999888743    


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                        ....++.+.....++++|                  +..++++++++|.++.+++++|.++..+|++++|+..+++++
T Consensus       239 --~~~~l~~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  298 (388)
T d1w3ba_         239 --VHGNLACVYYEQGLIDLA------------------IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             --HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence              333334344444555555                  889999999999999999999999999999999999999999


Q ss_pred             HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc-CCCC
Q 004984          632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPSD  707 (721)
Q Consensus       632 ~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  707 (721)
                      ...|+++..+..+|+++..+|++++|+..|++|++++|++. ++++.|.++...+--    ..-+..+++|++ -|.+
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL----QEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC----HHHHHHHHHHHTTCTTC
T ss_pred             ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999988 999999999877532    234667778876 4544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=238.95  Aligned_cols=237  Identities=13%  Similarity=-0.028  Sum_probs=190.6

Q ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 004984          419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN  494 (721)
Q Consensus       419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~  494 (721)
                      +..|..++..|++++|+..|+++|+.+|+++.+|..+|.    .++.++|+..|++|++++|+++.+|.++|.++..+|+
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            456666777777777777777777777776666666654    2555788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHH----------H------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 004984          495 VEAALAEINRILGFKLALECLE----------L------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH  558 (721)
Q Consensus       495 ~~eAl~~~~kAL~l~P~~~~~~----------~------R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~  558 (721)
                      +++|+..+++++.++|+.....          .      ....+...+.+.+|+..|+++++++|++..    ..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~----~~~~~~l  178 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----PDVQCGL  178 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc----cccchhh
Confidence            9999999999999998622110          0      012355678899999999999999999743    2234444


Q ss_pred             HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       559 ~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                      +.+.....++++|                  +..+++++..+|.++.+|+++|.++..+|++++|+..|++|++++|+++
T Consensus       179 ~~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         179 GVLFNLSGEYDKA------------------VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhhh------------------hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            5455555556665                  8899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK  677 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~  677 (721)
                      ++++++|.+++.+|++++|+..|++||+++|+.. +++..
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  280 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  280 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence            9999999999999999999999999999999877 44443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.3e-25  Score=227.10  Aligned_cols=255  Identities=13%  Similarity=-0.015  Sum_probs=212.1

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cC
Q 004984          386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC  459 (721)
Q Consensus       386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~  459 (721)
                      .+++|..+...|++++|+..|++||+.+|  ..++.++|.++..+|++++|+..|.++++++|+....|.++|.    .+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            35789999999999999999999999954  6679999999999999999999999999999999998888874    36


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHH---------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYM---------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCF  521 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~---------------~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~~~~~~R~~~  521 (721)
                      +.++|+..|++++.++|+....+.               .....+...+.+.+|+..|.++++++|+   +..+..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            779999999999999999765432               2223445567899999999999999995   4567788999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC
Q 004984          522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA  601 (721)
Q Consensus       522 ~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P  601 (721)
                      +..+|++++|+..|++++.++|++.      .+...++.+....+++++|                  +..++++++++|
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p  237 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRALELQP  237 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCT
T ss_pred             HHHHHHHhhhhcccccccccccccc------cchhhhhhcccccccchhH------------------HHHHHHHHHHhh
Confidence            9999999999999999999999984      3445555555556666666                  889999999999


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH-----------HHHHHHHHhcCCHHHHHHHHHHH
Q 004984          602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL-----------VYEGWILYDTSHCEEGLRKAEES  664 (721)
Q Consensus       602 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~-----------~~~G~~Ly~~G~~deAl~~ye~A  664 (721)
                      +++.+|+++|.++.++|++++|+..|++|++++|++..+.           .++|.++..+|+.|.+...-.+.
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~  311 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  311 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999988754           44666777777776665444333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-24  Score=228.51  Aligned_cols=186  Identities=15%  Similarity=0.130  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL  539 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal  539 (721)
                      ++|+..|++||+++|++..+|++||.++..+|+ +++|+..++++|+++|+ +..|++||+++..+|++++|+.+|++++
T Consensus        60 ~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal  139 (315)
T d2h6fa1          60 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL  139 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhh
Confidence            666666667777777777777777777766654 67777777777777774 6666667777777777777777777777


Q ss_pred             hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004984          540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC  619 (721)
Q Consensus       540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~  619 (721)
                      +++|++..      +...++.+....+++++|                  +.+++++|+++|.+..+|+++|.++.++|+
T Consensus       140 ~~dp~n~~------a~~~~~~~~~~~~~~~~A------------------l~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         140 NQDAKNYH------AWQHRQWVIQEFKLWDNE------------------LQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHCTTCHH------HHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhcchH------HHHHHHHHHHHHHhhHHH------------------HHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            77777632      333333333333333333                  667777777777777777788877777776


Q ss_pred             ------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          620 ------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       620 ------~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                            +++|+..+.+|++++|++..+++++|+++...| .+++...++++++++|+..
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence                  467888888888888888888888887755444 5777777888877777643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.5e-24  Score=222.77  Aligned_cols=192  Identities=14%  Similarity=0.149  Sum_probs=173.9

Q ss_pred             HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhh
Q 004984          471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMF  548 (721)
Q Consensus       471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~eeAl~d~~kal~L~P~~~~~  548 (721)
                      +|.++|++.++|.++|.++...+++++|+..+++||+++|+ ..+|++||.++..+| ++++|+..|+++++++|++.. 
T Consensus        35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~-  113 (315)
T d2h6fa1          35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ-  113 (315)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh-
Confidence            68889999999999999999999999999999999999996 889999999999987 599999999999999999943 


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004984          549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ  628 (721)
Q Consensus       549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~  628 (721)
                           +...++.+.....++++|                  +.+++++|+++|.+..+|+++|.++..+|++++|+..++
T Consensus       114 -----a~~~~~~~~~~l~~~~eA------------------l~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         114 -----VWHHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             -----HHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             -----HHHHHhHHHHhhccHHHH------------------HHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                 444444444444555555                  899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 004984          629 LARQHAASDHERLVYEGWILYDTSH------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ  686 (721)
Q Consensus       629 ~Al~l~P~~~ea~~~~G~~Ly~~G~------~deAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~  686 (721)
                      +|++++|++..+++++|.++..+|+      +++|+..+++||+++|+++ +|+..|.++.+.++
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~  235 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL  235 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred             HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh
Confidence            9999999999999999999998887      6899999999999999998 99999999987654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.5e-23  Score=218.97  Aligned_cols=252  Identities=10%  Similarity=-0.112  Sum_probs=214.3

Q ss_pred             hccchHHHHHHHHHHHhccchh--hHhhHHHHHH----------HhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----
Q 004984          395 LRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGY----------IKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----  458 (721)
Q Consensus       395 ~~g~y~eA~~~f~~AL~~~~~~--A~~~lg~~~~----------~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----  458 (721)
                      ..+..++|+..|+++|+++|..  +|..++.+..          ..|++.+|+..+.++++.+|++..+|..+|..    
T Consensus        41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence            3444589999999999997654  5555555444          44558899999999999999999999988742    


Q ss_pred             C--ChhHHHHHHHHHHhcCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004984          459 C--EGDKRWEDLDKATALDPTLSYPYM-YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD  534 (721)
Q Consensus       459 ~--~~~eAl~d~~kAieLdP~~~~ay~-~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d  534 (721)
                      +  ..++|+..+++|++++|.+..++. .+|.++...|++++|+..++++|+++|+ +..|+++|.++..+|++++|+..
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            2  358999999999999999999875 6789999999999999999999999996 88899999999999999999999


Q ss_pred             HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 004984          535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL  614 (721)
Q Consensus       535 ~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L  614 (721)
                      +++++.+.|++...      ...                +..+.      ....+...+.+++..+|.+..++.++|.++
T Consensus       201 ~~~~~~~~~~~~~~------~~~----------------~~~l~------~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~  252 (334)
T d1dcea1         201 GRLPENVLLKELEL------VQN----------------AFFTD------PNDQSAWFYHRWLLGRAEPLFRCELSVEKS  252 (334)
T ss_dssp             CSSCHHHHHHHHHH------HHH----------------HHHHC------SSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred             HHHhHHhHHHHHHH------HHH----------------HHHhc------chhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            99999998876321      000                00111      111257899999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 004984          615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF  674 (721)
Q Consensus       615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~  674 (721)
                      ..+|++++|+..+.+++..+|++.+++.++|+++..+|++++|+..|++|++++|....|
T Consensus       253 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence            999999999999999999999999999999999999999999999999999999987743

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-22  Score=184.39  Aligned_cols=103  Identities=20%  Similarity=0.353  Sum_probs=96.5

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|.|+|++|+|||.||+++|+||++||.+++.|+....+.++  ++++++|+.+++|+|||++. ++.++
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~~~Ytg~~~-i~~~~   95 (122)
T d1r29a_          19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGN   95 (122)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred             HHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec--ccCHHHHHHHHhhhcCCeec-Cchhh
Confidence            3467889999999999999999999999999999999999999887777666  59999999999999999998 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984          255 LLEILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      +.+++.+|++|+++.|++.|.+||.+
T Consensus        96 v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          96 IMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            99999999999999999999999975

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8.1e-21  Score=190.35  Aligned_cols=189  Identities=13%  Similarity=0.038  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004984          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (721)
Q Consensus       462 ~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~  540 (721)
                      ++|+.+|++||+++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus        54 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_          54 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            66777788888888999999999999999999999999999999999996 77788888888999999999999999999


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH---HHHc
Q 004984          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL---LLRL  617 (721)
Q Consensus       541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~---L~~l  617 (721)
                      ++|++....      .............+.+                  ..........++.... +......   ....
T Consensus       134 ~~p~~~~~~------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  188 (259)
T d1xnfa_         134 DDPNDPFRS------LWLYLAEQKLDEKQAK------------------EVLKQHFEKSDKEQWG-WNIVEFYLGNISEQ  188 (259)
T ss_dssp             HCTTCHHHH------HHHHHHHHHHCHHHHH------------------HHHHHHHHHSCCCSTH-HHHHHHHTTSSCHH
T ss_pred             hccccHHHH------HHHHHHHHHhhhHHHH------------------HHHHHHhhccchhhhh-hhHHHHHHHHHHHH
Confidence            999874321      1111111122222222                  1122223333333221 1111111   1123


Q ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 004984          618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-FEAFF  675 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~-~~a~~  675 (721)
                      +..+.+...+..+..+.|+.+++++++|.++..+|++++|+..|++||+++|+ |..|.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            34667778888888899999999999999999999999999999999999985 44543

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=179.08  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=91.6

Q ss_pred             ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHHH
Q 004984          175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL  254 (721)
Q Consensus       175 ~~~~~~~~DV~l~v~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~~  254 (721)
                      +..++.+|||+|.|+|++|+|||.|||++|+||++||.+++     .+|++++  +++++|+.+++|+|||++. ++.++
T Consensus        22 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~~--v~~~~f~~ll~~~Ytg~i~-l~~~~   93 (121)
T d1buoa_          22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLDF--LSPKTFQQILEYAYTATLQ-AKAED   93 (121)
T ss_dssp             HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEECS--SCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred             HHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc-----ceeecCC--CCHHHHHHHHHheEccccC-CcHHH
Confidence            34678899999999999999999999999999999998764     5799984  9999999999999999998 99999


Q ss_pred             HHHHHHHhhhcChhhHHHHHHHHHHh
Q 004984          255 LLEILIFANKFCCERLKDACDRKLAS  280 (721)
Q Consensus       255 v~~LL~aAd~~~v~~L~~~C~~~L~~  280 (721)
                      +.+++.+|++|+++.|++.|++||.+
T Consensus        94 v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          94 LDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999999999975

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.7e-20  Score=186.49  Aligned_cols=222  Identities=11%  Similarity=-0.017  Sum_probs=162.5

Q ss_pred             chHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhh----cCChhHHHHH
Q 004984          398 EYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWED  467 (721)
Q Consensus       398 ~y~eA~~~f~~AL~~------~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~----~~~~~eAl~d  467 (721)
                      +++.|+..+++++..      ..+.+++.+|.+|..+|++++|+..|+++|+++|+++.+|+++|.    .++.++|+.+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            455555666666543      123456667777777777777777777777777777777777764    2566888889


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      |++|++++|+++.+|.++|.++..+|++++|+..|+++|+++|+ .......+..+..++..+.+..........++...
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW  173 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence            99999999999999999999999999999999999999999996 55555677788888887777777777777777653


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 004984          547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS  626 (721)
Q Consensus       547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~  626 (721)
                      ..   .......+.. ......+.                  +...+..++...|..+++|+++|.++..+|++++|+..
T Consensus       174 ~~---~~~~~~~~~~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  231 (259)
T d1xnfa_         174 GW---NIVEFYLGNI-SEQTLMER------------------LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL  231 (259)
T ss_dssp             HH---HHHHHHTTSS-CHHHHHHH------------------HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hh---hHHHHHHHHH-HHHHHHHH------------------HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            11   0011110000 00011111                  23455667788889999999999999999999999999


Q ss_pred             HHHHHHhCCCChhHH
Q 004984          627 LQLARQHAASDHERL  641 (721)
Q Consensus       627 ~~~Al~l~P~~~ea~  641 (721)
                      |++|+..+|++-..|
T Consensus       232 ~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         232 FKLAVANNVHNFVEH  246 (259)
T ss_dssp             HHHHHTTCCTTCHHH
T ss_pred             HHHHHHcCCCCHHHH
Confidence            999999999986444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=8e-21  Score=199.53  Aligned_cols=266  Identities=6%  Similarity=-0.122  Sum_probs=211.7

Q ss_pred             CchhHHHHHHHHHHhhhHHHH------H-HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCC-
Q 004984          361 RSDKTVCFLERLLESAETDRQ------R-LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGH-  430 (721)
Q Consensus       361 rs~~~~~LLe~Lv~~a~~~lq------~-~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~-  430 (721)
                      .++.+..+.++++..-|+...      . ...+...|......|++++|+.+|+++|+.+|  ..+++.+|.++...|+ 
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            456667777777654444321      1 13334556667778889999999999999964  5567888888877664 


Q ss_pred             -HHHHHHHHHHHHhcCCCcHHHHH-HHhh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          431 -KLWAYEKLNSVISSVTPLGWMYQ-ERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR  504 (721)
Q Consensus       431 -~~~A~~~~~~aI~~~~~~~~ay~-~rg~----~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~k  504 (721)
                       .++|+..+.++++.+|++..++. ..|.    .+..++|+..++++|+++|++..+|.+||.++..+|++++|+..+++
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             89999999999999999877754 4443    35669999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 004984          505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS  583 (721)
Q Consensus       505 AL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~  583 (721)
                      ++.+.|. ...+    ..+..++..++|+..|.+++..+|.+.......      +.+....+++.+|            
T Consensus       204 ~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l------~~~~~~~~~~~~a------------  261 (334)
T d1dcea1         204 PENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS------VEKSTVLQSELES------------  261 (334)
T ss_dssp             CHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCC------HHHHHHHHHHHHH------------
T ss_pred             hHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHH------HHHHHHHhhHHHH------------
Confidence            9998885 3322    234567888999999999999999985432211      1122223444444            


Q ss_pred             ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 004984          584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC  654 (721)
Q Consensus       584 ~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~  654 (721)
                            +..+.+++..+|++..+|+.+|.++..+|++++|+..|++|++++|+++..+.++++.+.-..++
T Consensus       262 ------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~  326 (334)
T d1dcea1         262 ------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV  326 (334)
T ss_dssp             ------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence                  77899999999999999999999999999999999999999999999999999999998864433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.4e-18  Score=175.47  Aligned_cols=270  Identities=14%  Similarity=0.079  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cH
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LG  449 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~------~~  449 (721)
                      ......++.+....|++++|+..|++||+..+.       .++..+|.++..+|++++|+..|.++++..+.      ..
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            455667899999999999999999999998432       36778999999999999999999999986432      23


Q ss_pred             HHHHHHhh----cCChhHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 004984          450 WMYQERSL----YCEGDKRWEDLDKATALDPTL--------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA------  511 (721)
Q Consensus       450 ~ay~~rg~----~~~~~eAl~d~~kAieLdP~~--------~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~------  511 (721)
                      .++.+++.    .++..+|+..+.+++++.+..        +..+..+|.++...|++++|+..+++++...+.      
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            33444432    255699999999999865432        357788999999999999999999999998663      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh-hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL  590 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al  590 (721)
                      ...+...+..+...|++.+|...+.++..+.+..... .....+....+.+.....+++.|                  .
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------------------~  233 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA------------------A  233 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH------------------H
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH------------------H
Confidence            2334556788999999999999999999987664221 11233444455555555555555                  5


Q ss_pred             HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHH------HhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004984          591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLAR------QHAASDHERLVYEGWILYDTSHCEEGLRK  660 (721)
Q Consensus       591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al------~l~P~~~ea~~~~G~~Ly~~G~~deAl~~  660 (721)
                      ..+.+++...|.+.    ..+.++|.++..+|++++|+..+++++      ...|+.+.++..+|++++.+|++++|+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (366)
T d1hz4a_         234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV  313 (366)
T ss_dssp             HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            66777777777664    446778999999999999999999998      45677889999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 004984          661 AEESIQMKRS  670 (721)
Q Consensus       661 ye~Ai~i~~~  670 (721)
                      +++|+++.+.
T Consensus       314 l~~Al~l~~~  323 (366)
T d1hz4a_         314 LLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999998654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-17  Score=186.84  Aligned_cols=221  Identities=7%  Similarity=-0.167  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc--CChhHHHHHHHHHHhcC
Q 004984          400 DEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--CEGDKRWEDLDKATALD  475 (721)
Q Consensus       400 ~eA~~~f~~AL~~--~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~--~~~~eAl~d~~kAieLd  475 (721)
                      -+|+++|++|+++  +.++++.++|.++..+|++.+|   |.++|..+|+.+.++...+..  ..+..+++.+.+.+...
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~   79 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR   79 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3788899998877  4566778888888888888776   556777776655544222111  00145556666655543


Q ss_pred             CC--ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          476 PT--LSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       476 P~--~~~-ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                      +.  ... ....++.+....+.|+.|+..+.+++.++|+ ...+.++|..+...|++++|+..+++++.++|..      
T Consensus        80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------  153 (497)
T d1ya0a1          80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------  153 (497)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHH------
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH------
Confidence            22  211 1122455555566666666666666666664 4555566666666666666666666666655432      


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR  631 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al  631 (721)
                        +...+|.+....+++++|                  +..|.+|++++|+++.+|+++|.++...|+..+|+..|.+|+
T Consensus       154 --~~~~LG~l~~~~~~~~~A------------------~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         154 --CLVHLGDIARYRNQTSQA------------------ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             --HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcccHHHH------------------HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              122233333333333333                  445555555555555555555555555555555555555555


Q ss_pred             HhCCCChhHHHHHHHHHH
Q 004984          632 QHAASDHERLVYEGWILY  649 (721)
Q Consensus       632 ~l~P~~~ea~~~~G~~Ly  649 (721)
                      .++|..+.|+.|++.++-
T Consensus       214 ~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         214 AVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             SSSBCCHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHH
Confidence            555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.3e-17  Score=161.27  Aligned_cols=161  Identities=11%  Similarity=0.091  Sum_probs=123.7

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |..+..+|++   ++|+..|++   +.|.++.+|+|+|.++..+|++++|+..|++||+++|+ +.++++||.++.++|+
T Consensus        12 g~~~~~~~d~---~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDW---KGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCH---HHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCH---HHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            4444455444   667777765   45667889999999999999999999999999999997 8889999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984          528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY  607 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~  607 (721)
                      +++|+.+|++|++..|.+....                        +.++.                  +...+...+.+
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~------------------------~~~~~------------------~~~~~~~~e~~  123 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLID------------------------YKILG------------------LQFKLFACEVL  123 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEE------------------------CGGGT------------------BCCEEEHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCchHH------------------------HHHhh------------------hhcccchHHHH
Confidence            9999999999999988773200                        00000                  01112234567


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004984          608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR  669 (721)
Q Consensus       608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~  669 (721)
                      +++|.++.++|++++|++.+++|+++.|+.            ..+.++.|+..+.++..++|
T Consensus       124 ~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~~~~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         124 YNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------GGGHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------chHHHHHHHHHHHhhhhCCc
Confidence            899999999999999999999999999875            34455677777777766665

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.4e-14  Score=147.08  Aligned_cols=294  Identities=13%  Similarity=0.076  Sum_probs=222.9

Q ss_pred             HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hh
Q 004984          347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET--DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IY  416 (721)
Q Consensus       347 ~~~~l~wV~~d~~~rs~~~~~LLe~Lv~~a~~--~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~  416 (721)
                      +.++...+.+... +.+.+..++++++...+.  ......++..+|.++...|++++|+..|++|+++.+        ..
T Consensus        14 ~~~lrA~~~~~~g-~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          14 FNALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3455566666654 677888899887764332  333467889999999999999999999999998721        23


Q ss_pred             hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHhh----cCChhHHHHHHHHHHhcCCCC-----h
Q 004984          417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----S  479 (721)
Q Consensus       417 A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~--------~~~~ay~~rg~----~~~~~eAl~d~~kAieLdP~~-----~  479 (721)
                      ++..++.++...|++..|...+.+++...+        ..+.++..+|.    .++.++|...|.+++...+..     .
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            466789999999999999999999987532        12344444443    255699999999999987765     4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 004984          480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----L----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR  551 (721)
Q Consensus       480 ~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----~----~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~  551 (721)
                      .++...|..+...+++.+|...+.+++.+.+.    +    ..+..++.++...|++++|...+++++++.|.+....  
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--  250 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--  250 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH--
Confidence            67888999999999999999999999987442    1    2245577899999999999999999999998864322  


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH------HhCCCChhHHHHHHHHHHHcCChHHHHH
Q 004984          552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML------ESDAPKGVLYFRQSLLLLRLNCPEAAMR  625 (721)
Q Consensus       552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL------~l~P~~~~~~~~~g~~L~~lg~~eeAl~  625 (721)
                      ......++.+.....++++|                  ...+++++      ...|..+.++..+|.++.++|++++|++
T Consensus       251 ~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR  312 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            22334445555555666666                  44555555      5668888999999999999999999999


Q ss_pred             HHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHH
Q 004984          626 SLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKA  661 (721)
Q Consensus       626 ~~~~Al~l~P~---------~~ea~~~~G~~Ly~~G~~deAl~~y  661 (721)
                      .+++|+++.+.         .++.+..+...+...|+.+|+....
T Consensus       313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~  357 (366)
T d1hz4a_         313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR  357 (366)
T ss_dssp             HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            99999998764         3345555666677888888887653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-15  Score=149.36  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV  561 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l  561 (721)
                      ..++|..+.+.|++++|+..|+++.  +|++..++++|.++..+|++++|+.+|++|+++||++                
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----------------   69 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----------------   69 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----------------
Confidence            3478999999999999999999864  5678889999999999999999999999998888887                


Q ss_pred             HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 004984          562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----  637 (721)
Q Consensus       562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----  637 (721)
                                                                +.+|+++|.++.++|++++|+.+|++|+...|.+    
T Consensus        70 ------------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~  107 (192)
T d1hh8a_          70 ------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID  107 (192)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred             ------------------------------------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH
Confidence                                                      4578899999999999999999999999886654    


Q ss_pred             ------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 004984          638 ------------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY  679 (721)
Q Consensus       638 ------------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~~  679 (721)
                                  +++++++|+++..+|++++|++.+++|+.+.|... ....+|.
T Consensus       108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al  162 (192)
T d1hh8a_         108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM  162 (192)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence                        47899999999999999999999999999999864 4444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=176.36  Aligned_cols=263  Identities=7%  Similarity=-0.054  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 004984          365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS  444 (721)
Q Consensus       365 ~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~  444 (721)
                      +.+.++++..+-++.   +.+++++|.++..+|++++|   |+++|..+|.++....+....-+..+..+++.+++.++.
T Consensus         5 A~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           5 SAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCCC---HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence            456677766665544   55778999999999999987   999999988766443222222233466778888887765


Q ss_pred             CCC--c--------HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 004984          445 VTP--L--------GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC  514 (721)
Q Consensus       445 ~~~--~--------~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~  514 (721)
                      ..+  .        +..+...+.|   ++|+..|.+++.++|++..++.++|.++...|++++|+..+++++.++| ..+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y---~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~  154 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFY---TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHC  154 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHH---HHHHHHHTC-------------------------------CCHHHHHHH-HHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHH
Confidence            432  1        1222233445   8889999999999999999999999999999999999999999997665 356


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984          515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY  594 (721)
Q Consensus       515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~  594 (721)
                      +.++|.++..+|++++|+..|++|++++|++      +.+++.+|.+.....++.+|                  +..|.
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------~~~~~~Lg~~~~~~~~~~~A------------------~~~y~  210 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN------GQPYNQLAILASSKGDHLTT------------------IFYYC  210 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------SHHHHHHHHHHHHTTCHHHH------------------HHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHcCCHHHH------------------HHHHH
Confidence            7789999999999999999999999999999      44566666666666666666                  88999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                      |||.++|..+.++.|++.++.+.....++...    ....+.....+...--++|..+.+++.-...++.+
T Consensus       211 ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~  277 (497)
T d1ya0a1         211 RSIAVKFPFPAASTNLQKALSKALESRDEVKT----KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE  277 (497)
T ss_dssp             HHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCS----SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHhhhhhhhhcc----ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence            99999999999999999998876544322110    00011122344555556666666666554444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.2e-15  Score=138.52  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 004984          481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM  559 (721)
Q Consensus       481 ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~  559 (721)
                      .+..+|+.+++.|+|++|+..|++||+++|+ +..|.++|.++..+|++++|+.+|+++++++|++              
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--------------   77 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--------------   77 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--------------
Confidence            4677899999999999999999999999996 7888899999999999999999888888888876              


Q ss_pred             HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 004984          560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE  639 (721)
Q Consensus       560 ~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e  639 (721)
                                                                  +.+|+++|.++..+|++++|+..+++|++++|++.+
T Consensus        78 --------------------------------------------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          78 --------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             --------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                                                        356888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hcCCHHHHHHH
Q 004984          640 RLVYEGWILY--DTSHCEEGLRK  660 (721)
Q Consensus       640 a~~~~G~~Ly--~~G~~deAl~~  660 (721)
                      ++..++.+..  ..+.+++|+..
T Consensus       114 ~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         114 AKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            9988887753  33444555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=4.5e-15  Score=152.97  Aligned_cols=228  Identities=11%  Similarity=0.036  Sum_probs=120.4

Q ss_pred             ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcC
Q 004984          396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALD  475 (721)
Q Consensus       396 ~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLd  475 (721)
                      .++|++|...|.+|            |.++..+|++++|+..|.+|++++...+                        -.
T Consensus        30 ~~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~------------------------~~   73 (290)
T d1qqea_          30 SYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAG------------------------NE   73 (290)
T ss_dssp             HHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT------------------------CH
T ss_pred             cccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcC------------------------CC
Confidence            34567777766665            5566777777777777777666531000                        01


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H----HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L----ECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       476 P~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~---~----~~~~~R~~~~-~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      |+.+.+|.++|.+|..+|++++|+..|++++++.++   +    ..+...|.++ ..+|++++|+..|++|+++.+....
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            112334555555555555555555555555554321   1    1122233333 2345555555555555554332210


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-------hHHHHHHHHHHHcCCh
Q 004984          548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-------VLYFRQSLLLLRLNCP  620 (721)
Q Consensus       548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~-------~~~~~~g~~L~~lg~~  620 (721)
                      ......+....+.+.....++++|                  +..|++++...|.++       ..+++.|.++...|++
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  215 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHH------------------HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence            000011222222222222233333                  445555555555544       3467888999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhH-----HHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          621 EAAMRSLQLARQHAASDHER-----LVYEGWILYD--TSHCEEGLRKAEESIQMKRSFEAFFLK  677 (721)
Q Consensus       621 eeAl~~~~~Al~l~P~~~ea-----~~~~G~~Ly~--~G~~deAl~~ye~Ai~i~~~~~a~~~~  677 (721)
                      +.|...++++++++|..++.     +..++.++..  .+.+++|+..|+++..++|-...+++|
T Consensus       216 ~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~  279 (290)
T d1qqea_         216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK  279 (290)
T ss_dssp             HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            99999999999999976553     3334444332  456999999999999888754444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.9e-15  Score=130.69  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       484 ~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      .+|..++..|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch
Confidence            4455555555555555555555555553 4444555555555555555555444444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9e-15  Score=130.99  Aligned_cols=97  Identities=14%  Similarity=0.083  Sum_probs=89.6

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      .|..+++.|++   ++|+..|++||+++|+++.+|.++|.++..+|++++|+..|+++|+++|+ +..++++|.++..+|
T Consensus         9 ~g~~~~~~g~~---~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNI---DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCH---HHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46677777666   89999999999999999999999999999999999999999999999996 888999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh
Q 004984          527 DYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~  547 (721)
                      ++++|+.+|+++++++|++..
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999854

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.3e-15  Score=143.45  Aligned_cols=121  Identities=15%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      +..+...|+.++..|+|++|+..|++||+++|+ +..|.++|.+|..+|++++|+.+|++|++++|++            
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------------   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------------
Confidence            344555666666666666666666666666664 5555566666666666666666666655555554            


Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 004984          558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD  637 (721)
Q Consensus       558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~  637 (721)
                                                                    +.+|+++|.++.++|++++|+..|++|++++|++
T Consensus        72 ----------------------------------------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          72 ----------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence                                                          2335556666666666666666666666666655


Q ss_pred             hhHHHHHHHHHHhcCCHHHH
Q 004984          638 HERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       638 ~ea~~~~G~~Ly~~G~~deA  657 (721)
                      ...+...++..+..+....+
T Consensus       106 ~~~~~~~~~~~l~~~~~~~~  125 (201)
T d2c2la1         106 RLNFGDDIPSALRIAKKKRW  125 (201)
T ss_dssp             TCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            55554455554444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-14  Score=132.63  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      .|..|++.|+|   ++|+..|++|++++|+++.+|.++|.+++.+|++++|+..|++||+++|+ ...++.+|.++..+|
T Consensus        16 ~gn~~~~~~~y---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCH---HHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            35566666555   88888889999999999999999999999999999999999999999996 788889999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh
Q 004984          527 DYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~  547 (721)
                      ++++|+.+|+++++++|++..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999854

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.2e-13  Score=140.01  Aligned_cols=173  Identities=8%  Similarity=-0.000  Sum_probs=131.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 004984          482 YMYRASSLMTKQNVEAALAEINRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA  554 (721)
Q Consensus       482 y~~rg~~l~~lg~~~eAl~~~~kAL~l~P------~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a  554 (721)
                      |...|++|..+|++++|+..|.+|+++.+      + ...+.+.|.+|..+|++++|+..|++++++.++......-..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            34448899999999999999999999732      2 3456778999999999999999999999998775322222222


Q ss_pred             HHHHHHH-HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCChHHHHHHH
Q 004984          555 SQLHMLV-REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP------KGVLYFRQSLLLLRLNCPEAAMRSL  627 (721)
Q Consensus       555 ~~~~~~l-~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~------~~~~~~~~g~~L~~lg~~eeAl~~~  627 (721)
                      ....+.+ .....++++|                  +..+.+|+++.+.      ...++.++|.++..+|++++|+..|
T Consensus       120 ~~~l~~~~~~~~~~~~~A------------------~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         120 KFELGEILENDLHDYAKA------------------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhHhhHHHHHHHH------------------HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence            2222222 2223444444                  7888888887543      3556899999999999999999999


Q ss_pred             HHHHHhCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 004984          628 QLARQHAASDHE-------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE  672 (721)
Q Consensus       628 ~~Al~l~P~~~e-------a~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~  672 (721)
                      +++++..|.+..       .+.+.|.+++..|++++|...+++++.++|+|.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (290)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence            999999998763       467889999999999999999999999999886

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.8e-14  Score=136.87  Aligned_cols=97  Identities=22%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             cHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 004984          448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE  526 (721)
Q Consensus       448 ~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg  526 (721)
                      .|..|+..|++   ++|+..|++||+++|+++.+|.++|.+|..+|++++|+..|++||+++|+ +.+|+++|.++..+|
T Consensus        10 ~Gn~~~~~g~~---~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1          10 QGNRLFVGRKY---PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHTTCH---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            35666666555   88888899999999999999999999999999999999999999999996 888999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCchh
Q 004984          527 DYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       527 d~eeAl~d~~kal~L~P~~~~  547 (721)
                      ++++|+.+|++|++++|++..
T Consensus        87 ~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          87 SYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCcccHH
Confidence            999999999999999997643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=3.6e-13  Score=127.59  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      ..+.+.++|..+.+|.+||.++..+|++++||..|++||+++|+ +.+++.+|.++..+|++++|+.+|+++++++|++.
T Consensus        66 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1          66 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            35667788999999999999999999999999999999999996 88899999999999999999999999999999984


Q ss_pred             h
Q 004984          547 M  547 (721)
Q Consensus       547 ~  547 (721)
                      .
T Consensus       146 ~  146 (169)
T d1ihga1         146 A  146 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=2.3e-13  Score=129.06  Aligned_cols=83  Identities=8%  Similarity=-0.083  Sum_probs=72.8

Q ss_pred             HHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 004984          596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF  674 (721)
Q Consensus       596 aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~  674 (721)
                      ...++|..+.++.++|.++.++|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. +.
T Consensus        69 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~  148 (169)
T d1ihga1          69 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ  148 (169)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34556777888999999999999999999999999999999999999999999999999999999999999999877 54


Q ss_pred             HHHH
Q 004984          675 FLKA  678 (721)
Q Consensus       675 ~~~~  678 (721)
                      ...+
T Consensus       149 ~~l~  152 (169)
T d1ihga1         149 AELL  152 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-12  Score=123.93  Aligned_cols=121  Identities=15%  Similarity=0.015  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---------------ECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~---------------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      +..+..+|+.++..|+|++|+..|++||.+.|. .               ..+.++|.+|..+|++++|+.+++++|+++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            345667777777777777777777777776552 1               122344555555555555555555544444


Q ss_pred             CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 004984          543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA  622 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee  622 (721)
                      |++                                                          +.+++++|.++..+|++++
T Consensus        93 p~~----------------------------------------------------------~~a~~~~g~~~~~~g~~~~  114 (170)
T d1p5qa1          93 SNN----------------------------------------------------------EKGLSRRGEAHLAVNDFEL  114 (170)
T ss_dssp             TTC----------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred             ccc----------------------------------------------------------hhhhHHHHHHHHHhhhHHH
Confidence            443                                                          4567777777778888888


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      |+..|++|++++|+++.+...++.+....+...+.
T Consensus       115 A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1         115 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887777777777777666655544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-12  Score=122.72  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=94.5

Q ss_pred             hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 004984          416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV  495 (721)
Q Consensus       416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~  495 (721)
                      ..+...|..++.+|++++|+..|+++|...|.........      .....         +-...+|.|+|.+|+.+|++
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~------~~~~~---------~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE------AQKAQ---------ALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH------HHHHH---------HHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH------Hhhhc---------hhHHHHHHHHHHHHHhhhhc
Confidence            3455689999999999999999999999876432211110      01111         11234789999999999999


Q ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      ++|+..+++||.++|+ +.+++.+|.++..+|++++|+.+|+++++++|++..
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999995 899999999999999999999999999999999854

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.38  E-value=1.6e-12  Score=121.55  Aligned_cols=72  Identities=7%  Similarity=-0.142  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 004984          606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK  677 (721)
Q Consensus       606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~  677 (721)
                      ++.|+|.++.++|++++|+.++++|++++|++..+++++|.+++.+|++++|+..|++|++++|+.. +..+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4566777777777777777777777777777777777777777777777777777777777777665 44433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.38  E-value=6.5e-11  Score=118.55  Aligned_cols=234  Identities=12%  Similarity=0.041  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHH----
Q 004984          383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQE----  454 (721)
Q Consensus       383 ~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~----~G~~~~A~~~~~~aI~~~~~~~~ay~~----  454 (721)
                      ..+++++|..+...|++.+|+++|++|.+.++..|.+.+|.+|..    ..++..|..++..+.......+.....    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~   81 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY   81 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence            457899999999999999999999999999999999999999886    456677777666655544322211110    


Q ss_pred             Hhh--cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q 004984          455 RSL--YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLALEDY  528 (721)
Q Consensus       455 rg~--~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~  528 (721)
                      .|.  ....+.|+..|++|++..+  ..+...+|..+..    ......|+..+.+..... ++..++.+|.++..... 
T Consensus        82 ~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~L~~~~~~~~~-  157 (265)
T d1ouva_          82 SGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRG-  157 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSS-
T ss_pred             cccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc-ccchhhhhhhhhccCCC-
Confidence            010  1122445555555554433  2333333433332    233444444444444211 23333333333221000 


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHH
Q 004984          529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF  608 (721)
Q Consensus       529 eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~  608 (721)
                                                                           ...+...+...+..+.  +++++.+.+
T Consensus       158 -----------------------------------------------------~~~~~~~~~~~~~~a~--~~g~~~A~~  182 (265)
T d1ouva_         158 -----------------------------------------------------TPKDLKKALASYDKAC--DLKDSPGCF  182 (265)
T ss_dssp             -----------------------------------------------------SCCCHHHHHHHHHHHH--HTTCHHHHH
T ss_pred             -----------------------------------------------------cccccccchhhhhccc--ccccccccc
Confidence                                                                 0001111233445444  467899999


Q ss_pred             HHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004984          609 RQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK  677 (721)
Q Consensus       609 ~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~  677 (721)
                      ++|.++..    ..++++|+..|++|.+..  ++.+.+++|.+++.    ..++++|+..|++|+.....-+...|+
T Consensus       183 ~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~  257 (265)
T d1ouva_         183 NAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  257 (265)
T ss_dssp             HHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            99999887    678999999999999884  78999999999986    448999999999999988776655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.1e-11  Score=123.67  Aligned_cols=207  Identities=11%  Similarity=0.029  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004984          462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAI  538 (721)
Q Consensus       462 ~eAl~d~~kAie-LdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~eeAl~d~~ka  538 (721)
                      ++|...|++|++ ..|.....|...+..+..+|++++|...|+++|+..|. .. .|...+.+....|++++|...|+++
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            788899999997 58999999999999999999999999999999999995 43 4566778888999999999999999


Q ss_pred             HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004984          539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRL  617 (721)
Q Consensus       539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~l  617 (721)
                      ++..|.....+      .....+..                  ...++.. |..++++++..+|.++.+|...+..+...
T Consensus       161 l~~~~~~~~~~------~~~a~~e~------------------~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         161 REDARTRHHVY------VTAALMEY------------------YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HTSTTCCTHHH------HHHHHHHH------------------HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHhCCCcHHHH------HHHHHHHH------------------HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            99999874321      11111111                  1112222 47799999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCChh--HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHH-----HHHHHHHHhhccCCCC
Q 004984          618 NCPEAAMRSLQLARQHAASDHE--RLVYEGWILY--DTSHCEEGLRKAEESIQMKRSFE-----AFFLKAYALADSSQDS  688 (721)
Q Consensus       618 g~~eeAl~~~~~Al~l~P~~~e--a~~~~G~~Ly--~~G~~deAl~~ye~Ai~i~~~~~-----a~~~~~~~~~~~~~~~  688 (721)
                      |+.+.|...|++|++..|.+++  ......|+.+  ..|+.+.+...++|+.++-|+..     +=++-=|...  .++|
T Consensus       217 g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ry~~~--d~~~  294 (308)
T d2onda1         217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFM--DLYP  294 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBT--TBCS
T ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHHHHHhc--ccCc
Confidence            9999999999999999887655  2344455555  45999999999999999887652     1122222222  3778


Q ss_pred             CchhhH
Q 004984          689 SCSSTV  694 (721)
Q Consensus       689 ~~~~~~  694 (721)
                      .++..+
T Consensus       295 ~~~~~l  300 (308)
T d2onda1         295 CSASEL  300 (308)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            666544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.37  E-value=6.9e-13  Score=123.30  Aligned_cols=94  Identities=13%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 004984          451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----------QNVEAALAEINRILGFKLA-LECLELRF  519 (721)
Q Consensus       451 ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l----------g~~~eAl~~~~kAL~l~P~-~~~~~~R~  519 (721)
                      .|...+.+   ++|+..|++|++++|+++.+|+++|.++..+          +++++|+..|++||+++|+ +.+++++|
T Consensus         6 ~~~r~~~f---e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           6 EFDRILLF---EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             SHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHccH---HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            34445555   8999999999999999999999999998854          4457899999999999996 78888899


Q ss_pred             HHHHhcCC-----------HHHHHHHHHHHHhhCCCchh
Q 004984          520 CFFLALED-----------YQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       520 ~~~~~lgd-----------~eeAl~d~~kal~L~P~~~~  547 (721)
                      .+|..+|+           +++|+..|++|++++|++..
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~  121 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  121 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence            88877764           79999999999999999854

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=3.4e-12  Score=120.97  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----------------LECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~----------------~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      +..+..+|+.+...|+|++|+..|++||.+-|.                ...+.++|.+|..+|++++|+.+++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            455778999999999999999999999976432                1124457777777887777777777776666


Q ss_pred             CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 004984          543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA  622 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee  622 (721)
                      |++                                                          +.+|+++|.++..+|++++
T Consensus        95 p~~----------------------------------------------------------~~a~~~~~~~~~~l~~~~~  116 (168)
T d1kt1a1          95 SAN----------------------------------------------------------EKGLYRRGEAQLLMNEFES  116 (168)
T ss_dssp             TTC----------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred             cch----------------------------------------------------------HHHHHHHHHHHHHcCCHHH
Confidence            665                                                          4568889999999999999


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 004984          623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       623 Al~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      |+.+|++|+.++|+++++...++.+....+.+.+.
T Consensus       117 A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1         117 AKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999988777766553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.36  E-value=2.7e-12  Score=121.67  Aligned_cols=86  Identities=15%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 004984          479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL  557 (721)
Q Consensus       479 ~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~  557 (721)
                      ...|.|+|.+|..+|++++|+.+++++|.++|+ ..+++.+|.++..+|++++|+.+|+++++++|++..      +...
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~------~~~~  137 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA------ARLQ  137 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------HHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHH
Confidence            457889999999999999999999999999996 788889999999999999999999999999999843      4444


Q ss_pred             HHHHHHhhhhhhH
Q 004984          558 HMLVREHIDNWTI  570 (721)
Q Consensus       558 ~~~l~~~~~~~~~  570 (721)
                      ++.+...+....+
T Consensus       138 l~~~~~~~~~~~e  150 (168)
T d1kt1a1         138 IFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHH
Confidence            4444444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=8.1e-12  Score=116.64  Aligned_cols=68  Identities=10%  Similarity=0.039  Sum_probs=62.3

Q ss_pred             cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 004984          585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS  652 (721)
Q Consensus       585 dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G  652 (721)
                      +++. |+..++++|+++|.++.+|+++|.++..+|++++|+..|++|++++|++.++...++++...+.
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            3334 5899999999999999999999999999999999999999999999999999999999876553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.8e-12  Score=115.01  Aligned_cols=107  Identities=14%  Similarity=0.058  Sum_probs=89.4

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLAL---ECLELRFCFF  522 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~~---~~~~~R~~~~  522 (721)
                      ...+...+.+   ++|.+.|++|+.++|+++.+++|+|.+++..++   +++|+..|+++++.+|++   ++++++|.+|
T Consensus         6 ~n~~~~~~~l---~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           6 LNELVSVEDL---LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3455556666   999999999999999999999999999987554   567999999999999864   4788999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 004984          523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH  564 (721)
Q Consensus       523 ~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~  564 (721)
                      ..+|++++|+..|+++++++|++.      .+..+++.+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~------~A~~l~~~I~~~  118 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN------QAKELERLIDKA  118 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHH
Confidence            999999999999999999999994      355555544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=115.23  Aligned_cols=96  Identities=18%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             CcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-------HHHHH
Q 004984          447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-------CLELR  518 (721)
Q Consensus       447 ~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~-------~~~~R  518 (721)
                      +.|..|+..|+|   ++|+.+|++||+++|+++.+|.+||.+|..+|++++|+.++++||+++|+ +.       .+...
T Consensus         9 ~~G~~~~~~~~y---~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           9 ELGNDAYKKKDF---DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCH---HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            457777777666   89999999999999999999999999999999999999999999999884 32       34556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 004984          519 FCFFLALEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~kal~L~P~~  545 (721)
                      |.++..+|++++|+..|++++..+|+.
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            788999999999999999999998874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.32  E-value=2.5e-12  Score=113.91  Aligned_cols=88  Identities=10%  Similarity=0.027  Sum_probs=74.3

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 004984          449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED  527 (721)
Q Consensus       449 ~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd  527 (721)
                      |..+++.|++   ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++||+++|+ ++.+..+|.+|..+|+
T Consensus        23 g~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhh---HHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            4445555444   77777888899999999999999999999999999999999999999996 7888889999999999


Q ss_pred             HHHHHHHHHHHH
Q 004984          528 YQAALCDVQAIL  539 (721)
Q Consensus       528 ~eeAl~d~~kal  539 (721)
                      +++|+..+++.|
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-12  Score=117.59  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004984          589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEE  663 (721)
Q Consensus       589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~---eeAl~~~~~Al~l~P~~--~ea~~~~G~~Ly~~G~~deAl~~ye~  663 (721)
                      |...|+++|.++|.++.++||.|.+|.+.+++   ++|+..++++++.+|++  .++++++|++++.+|++++|+..|++
T Consensus        18 Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~   97 (122)
T d1nzna_          18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   97 (122)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36789999999999999999999999986655   46999999999999866  56999999999999999999999999


Q ss_pred             HHhcCCCHH-HHHHHHHHh
Q 004984          664 SIQMKRSFE-AFFLKAYAL  681 (721)
Q Consensus       664 Ai~i~~~~~-a~~~~~~~~  681 (721)
                      +++++|++. |..+++...
T Consensus        98 aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          98 LLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhCcCCHHHHHHHHHHH
Confidence            999999988 888887653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=1.6e-12  Score=120.72  Aligned_cols=122  Identities=11%  Similarity=-0.039  Sum_probs=87.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 004984          488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID  566 (721)
Q Consensus       488 ~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~  566 (721)
                      .+.+++++++|+..|++||+++|+ ++.++++|.++..++++.++...                              .+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------------~~   55 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------------KQ   55 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------------HH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------------HH
Confidence            345566677777777777777774 66667777766655554443331                              11


Q ss_pred             hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCC
Q 004984          567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAA  635 (721)
Q Consensus       567 ~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P  635 (721)
                      .+++|                  +..+++||+++|.++.+|+++|.++..+|+           +++|++.|++|++++|
T Consensus        56 ~~~~A------------------i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          56 MIQEA------------------ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHH------------------HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            22233                  777888888888888889999998887764           6899999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHH
Q 004984          636 SDHERLVYEGWILYDTSHCEEG  657 (721)
Q Consensus       636 ~~~ea~~~~G~~Ly~~G~~deA  657 (721)
                      ++..++.++|.+.-..+.++|+
T Consensus       118 ~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         118 DNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             TCHHHHHHHHHHHTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998886555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.30  E-value=6.6e-12  Score=111.11  Aligned_cols=93  Identities=13%  Similarity=-0.001  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 004984          515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY  594 (721)
Q Consensus       515 ~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~  594 (721)
                      ++..|..+...|++++|+..|+++++++|++                                                 
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------------------   49 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------------------------------------------   49 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc-------------------------------------------------
Confidence            4567777788888888877777777666665                                                 


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004984          595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI  665 (721)
Q Consensus       595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai  665 (721)
                               +.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|++.++|.|
T Consensus        50 ---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 ---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                     56788999999999999999999999999999999999999999999999999999999976

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.5e-12  Score=112.63  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcC
Q 004984          382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC  459 (721)
Q Consensus       382 ~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~  459 (721)
                      ++..+.++|..++..|+|++|+.+|++||+++|  ..++.++|.++..+|++++|+.+++++|+++|+.+..|...+   
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a---   79 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA---   79 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH---
Confidence            467778899999999999999999999999854  446778899999999988888888888877776665555543   


Q ss_pred             ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH
Q 004984          460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE  516 (721)
Q Consensus       460 ~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~  516 (721)
                                          .+|.++|.++..++++++|+..|++++..+|+++...
T Consensus        80 --------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~  116 (128)
T d1elra_          80 --------------------KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK  116 (128)
T ss_dssp             --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             --------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHH
Confidence                                3578999999999999999999999999999876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3e-10  Score=117.06  Aligned_cols=218  Identities=8%  Similarity=-0.032  Sum_probs=161.3

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHH--------------hcCCHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHhcCC
Q 004984          464 RWEDLDKATALDPTLSYPYMYRASSLM--------------TKQNVEAALAEINRILGF-KLA-LECLELRFCFFLALED  527 (721)
Q Consensus       464 Al~d~~kAieLdP~~~~ay~~rg~~l~--------------~lg~~~eAl~~~~kAL~l-~P~-~~~~~~R~~~~~~lgd  527 (721)
                      +...|++|+...|.++..|.+-+.-+.              ..+..++|...|+||++. .|. ...|...+.+...+|+
T Consensus        35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence            455688888888888888877655443              334568999999999974 675 6667778889999999


Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 004984          528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY  607 (721)
Q Consensus       528 ~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~  607 (721)
                      +++|...|+++++..|.+..     .+......+....+..+.                  |..++.+++...|.+...|
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~-----~~w~~~~~~~~~~~~~~~------------------ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKS------------------GRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTH-----HHHHHHHHHHHHHHCHHH------------------HHHHHHHHHTSTTCCTHHH
T ss_pred             HHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHcCChHH------------------HHHHHHHHHHhCCCcHHHH
Confidence            99999999999999998632     111222222222333333                  3778999999999999999


Q ss_pred             HHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHhh
Q 004984          608 FRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS----FEAFFLKAYALA  682 (721)
Q Consensus       608 ~~~g~~L~~-lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~----~~a~~~~~~~~~  682 (721)
                      ...|..... .|+.+.|...|++++...|++++.+...+..+...|++++|-..|++|+...|.    ...++.+-.-+.
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE  251 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE  251 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999987655 589999999999999999999999999999999999999999999999997663    233444444443


Q ss_pred             ccCCCCCchhhHHHHHHHhhc-CCCC
Q 004984          683 DSSQDSSCSSTVVSLLEDALK-CPSD  707 (721)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~-~~~~  707 (721)
                      -.-=|.++   +..+.+.+.. +|.+
T Consensus       252 ~~~G~~~~---~~~~~~r~~~~~~~~  274 (308)
T d2onda1         252 SNIGDLAS---ILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHSCHHH---HHHHHHHHHHHTTTT
T ss_pred             HHcCCHHH---HHHHHHHHHHHCccc
Confidence            33334443   3344444433 5655

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.16  E-value=4.6e-12  Score=118.43  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=91.5

Q ss_pred             hHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCC-H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004984          479 SYPYMY--RASSLMTKQNVEAALAEINRILGFKLA-L------------ECLELRFCFFLALEDYQAALCDVQAILTLSP  543 (721)
Q Consensus       479 ~~ay~~--rg~~l~~lg~~~eAl~~~~kAL~l~P~-~------------~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P  543 (721)
                      +.+|.+  +|..++..|+|++|+..|++||+++|+ +            .++.++|.+|..+|++++|+.+|++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            445555  488899999999999999999999875 2            3567899999999999999999999999887


Q ss_pred             CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 004984          544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA  623 (721)
Q Consensus       544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA  623 (721)
                      +......                  +                             ..|....+++++|.++..+|++++|
T Consensus        87 ~~~~~~~------------------~-----------------------------~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          87 RRGELNQ------------------D-----------------------------EGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             HHCCTTS------------------T-----------------------------HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccccc------------------c-----------------------------ccchhHHHHhhhHHHHHHHHHHHHH
Confidence            6421000                  0                             0011234789999999999999999


Q ss_pred             HHHHHHHHHhCCCChhHH
Q 004984          624 MRSLQLARQHAASDHERL  641 (721)
Q Consensus       624 l~~~~~Al~l~P~~~ea~  641 (721)
                      +.+|++|+++.|......
T Consensus       120 ~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1         120 MPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             HHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHhhHHhhchH
Confidence            999999999988776554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.12  E-value=5.5e-11  Score=110.91  Aligned_cols=109  Identities=10%  Similarity=-0.006  Sum_probs=80.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 004984          420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL  499 (721)
Q Consensus       420 ~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl  499 (721)
                      +.|..++..|++++|+..|+++|++.|+++..+...                  ..+..+.+|.++|.+|..+|++++|+
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~------------------~~~~~a~~~~nlg~~~~~lg~~~~A~   75 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD------------------HAGFDAFCHAGLAEALAGLRSFDEAL   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC------------------HHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc------------------cchhHHHHHHHHHHHHHHcCccchhh
Confidence            346667777777777777777776666543211000                  00112468999999999999999999


Q ss_pred             HHHHHHHhcCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 004984          500 AEINRILGFKL-------A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR  546 (721)
Q Consensus       500 ~~~~kAL~l~P-------~-----~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~  546 (721)
                      .+++++|++.|       +     ...++++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        76 ~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          76 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999998744       2     12467789999999999999999999999988764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=5.9e-10  Score=107.00  Aligned_cols=135  Identities=10%  Similarity=-0.101  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 004984          512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS  591 (721)
Q Consensus       512 ~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~  591 (721)
                      ++.+..+|......|++++|+..|++|+++.|+.....                  +                .+  ..-
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------------~----------------~~--~~w   54 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------------L----------------RD--FQF   54 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------------G----------------TT--STT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc------------------C----------------cc--hHH
Confidence            45566778888889999999999999999988763210                  0                00  011


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 004984          592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES-------  664 (721)
Q Consensus       592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~G~~deAl~~ye~A-------  664 (721)
                      ...+...+.+....++.+++.++..+|++++|+..++++++++|.+..++.+++.+++.+|++++|++.|+++       
T Consensus        55 ~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          55 VEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            2334455666677889999999999999999999999999999999999999999999999999999999998       


Q ss_pred             HhcCCCHHHHHHHHHHhh
Q 004984          665 IQMKRSFEAFFLKAYALA  682 (721)
Q Consensus       665 i~i~~~~~a~~~~~~~~~  682 (721)
                      +.+.|+.+.--+..-.+.
T Consensus       135 LG~~P~~~l~~l~~~il~  152 (179)
T d2ff4a2         135 LGIDPGPTLRALNERILR  152 (179)
T ss_dssp             HSCCCCHHHHHHHHHHHT
T ss_pred             hCCCcCHHHHHHHHHHHh
Confidence            668888874444333333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=99.69  Aligned_cols=78  Identities=10%  Similarity=0.027  Sum_probs=72.1

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 004984          603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF  674 (721)
Q Consensus       603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~  674 (721)
                      +++-+|++|.++.+.|++++|+.+|++|+++.|.+       ++++.++|++++.+|++++|+..|++|++++|+++ |+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678999999999999999999999999997765       67899999999999999999999999999999999 99


Q ss_pred             HHHHHH
Q 004984          675 FLKAYA  680 (721)
Q Consensus       675 ~~~~~~  680 (721)
                      ++.++.
T Consensus        84 ~Nl~~~   89 (95)
T d1tjca_          84 GNLKYF   89 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998774

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.04  E-value=8.3e-08  Score=95.33  Aligned_cols=208  Identities=13%  Similarity=0.010  Sum_probs=141.9

Q ss_pred             hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----
Q 004984          416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----  491 (721)
Q Consensus       416 ~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----  491 (721)
                      .+++++|..++.+|++.+|+++                              |++|.++  +++.+++++|.+|..    
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~------------------------------~~kAa~~--g~~~A~~~Lg~~y~~G~~~   50 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKY------------------------------FEKACDL--KENSGCFNLGVLYYQGQGV   50 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH------------------------------HHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHH------------------------------HHHHHHC--CCHHHHHHHHHHHHcCCCc
Confidence            4566666666666666655555                              4555443  466778888888876    


Q ss_pred             cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 004984          492 KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN  567 (721)
Q Consensus       492 lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~  567 (721)
                      .+++..|+..+.++.... .+......|.++..    .++.+.|+..|+++.+..+....        ..++.....   
T Consensus        51 ~~d~~~a~~~~~~a~~~~-~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~--------~~l~~~~~~---  118 (265)
T d1ouva_          51 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC--------ASLGGIYHD---  118 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHH---
T ss_pred             chhHHHHHHhhccccccc-ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH--------HhhcccccC---
Confidence            668888888888888543 34445555555443    56888888888888887765422        111100000   


Q ss_pred             hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHH
Q 004984          568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVY  643 (721)
Q Consensus       568 ~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~  643 (721)
                                 ..........++..+.  ...++.+..+++++|..+..    ...++.+...++.|.+  +.+++|+++
T Consensus       119 -----------~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~  183 (265)
T d1ouva_         119 -----------GKVVTRDFKKAVEYFT--KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFN  183 (265)
T ss_dssp             -----------CSSSCCCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             -----------CCcccchhHHHHHHhh--hhhcccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccc
Confidence                       0000001111222333  34557888999999999997    6778889999999886  568999999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 004984          644 EGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD  683 (721)
Q Consensus       644 ~G~~Ly~----~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~  683 (721)
                      +|.+++.    ..++++|+..|++|.+.. +..|+|+-|+.+..
T Consensus       184 lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~LG~~y~~  226 (265)
T d1ouva_         184 AGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred             hhhhcccCcccccchhhhhhhHhhhhccc-CHHHHHHHHHHHHc
Confidence            9999988    679999999999999885 35699999999886

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.5e-10  Score=94.79  Aligned_cols=90  Identities=10%  Similarity=-0.126  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 004984          511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL  590 (721)
Q Consensus       511 ~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al  590 (721)
                      +++..+..|.++...|+|++|+..|++|+++.|++..                                           
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-------------------------------------------   40 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------------------------------   40 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------------------------------
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------------------------------
Confidence            4566788999999999999999999999999887621                                           


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 004984          591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT  651 (721)
Q Consensus       591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~~  651 (721)
                              ..+..+++++++|.++.++|++++|+..|++|++++|++++++.|++.+...+
T Consensus        41 --------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          41 --------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             --------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence                    12445678899999999999999999999999999999999999998765443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=4.3e-09  Score=100.80  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=56.6

Q ss_pred             HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhC
Q 004984          471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI-------LTLS  542 (721)
Q Consensus       471 AieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~ka-------l~L~  542 (721)
                      +..+.+....++.++|.++..+|++++|+..++++|+++|. ...|..++.++..+|++++|++.|+++       +-++
T Consensus        59 r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          59 ATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34455556677788888888888888888888888888885 666777788888888888888888887       4466


Q ss_pred             CCc
Q 004984          543 PDY  545 (721)
Q Consensus       543 P~~  545 (721)
                      |..
T Consensus       139 P~~  141 (179)
T d2ff4a2         139 PGP  141 (179)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.71  E-value=1e-08  Score=104.18  Aligned_cols=133  Identities=7%  Similarity=-0.083  Sum_probs=74.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhh
Q 004984          490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW  568 (721)
Q Consensus       490 ~~lg~~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~  568 (721)
                      +..|++++|++.|+++|+.+|+ ...+.+++.++...|++++|+..|+++++++|++..      +....+.+.......
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~------~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP------GASQLRHLVKAAQAR   80 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH------HHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHhcccc
Confidence            3455555555555555555553 455555555555555555555555555555555522      111111111112222


Q ss_pred             hHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 004984          569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG  645 (721)
Q Consensus       569 ~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G  645 (721)
                      +++.      ..   ..        ...+..+|.....+..++.++.+.|++++|.+.+++|.++.|+.+..+...+
T Consensus        81 ~~a~------~~---~~--------~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~  140 (264)
T d1zbpa1          81 KDFA------QG---AA--------TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS  140 (264)
T ss_dssp             HHHT------TS---CC--------CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             HHHH------HH---hh--------hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccC
Confidence            2221      00   00        0012234556667778888888999999999999999999998887655443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.64  E-value=1.7e-08  Score=102.63  Aligned_cols=121  Identities=13%  Similarity=-0.024  Sum_probs=89.0

Q ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004984          427 IKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI  502 (721)
Q Consensus       427 ~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~----~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~  502 (721)
                      ..|++++|++.+.++|+.+|+++.++.+++.+    |+.++|+..|+++++++|++..++..++.++...++.+++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence            34555555555555555555555555444432    44467777788899999999999999999999888888888877


Q ss_pred             HHHHhcC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 004984          503 NRILGFK-LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM  547 (721)
Q Consensus       503 ~kAL~l~-P~-~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~  547 (721)
                      .++..+. |+ ...+..++.++...|++++|+..++++.++.|+...
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            7766554 33 444566788899999999999999999999999743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=8.1e-06  Score=72.64  Aligned_cols=76  Identities=17%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             hhHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 004984          604 GVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAASDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA  678 (721)
Q Consensus       604 ~~~~~~~g~~L~~lg~~---eeAl~~~~~Al~l~P~~~-ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~-a~~~~~  678 (721)
                      +...|+.|.+|.+-...   ++|+..++.+++.+|.+. +.+|++|.++|++|+|++|...++++++++|++. |-.||-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            67899999999986554   589999999999999875 9999999999999999999999999999999998 766664


Q ss_pred             H
Q 004984          679 Y  679 (721)
Q Consensus       679 ~  679 (721)
                      .
T Consensus       115 ~  115 (124)
T d2pqrb1         115 M  115 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=7.2e-05  Score=66.56  Aligned_cols=114  Identities=13%  Similarity=0.117  Sum_probs=80.3

Q ss_pred             cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCC
Q 004984          397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP  476 (721)
Q Consensus       397 g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP  476 (721)
                      +++++|+.+|++|.+.++..+.+++|..  ...+                              .++|+..|++|.+.  
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~--~~~~------------------------------~~~a~~~~~~aa~~--   52 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFGCLSLVSN--SQIN------------------------------KQKLFQYLSKACEL--   52 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTC--TTSC------------------------------HHHHHHHHHHHHHT--
T ss_pred             cCHHHHHHHHHHHHHCCChhhhhhhccc--cccC------------------------------HHHHHHHHhhhhcc--
Confidence            4788999999999988888877766531  1122                              25666666776654  


Q ss_pred             CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCc
Q 004984          477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDY  545 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~eeAl~d~~kal~L~P~~  545 (721)
                      +++.+++++|.+|..    ..++++|+..|+++.+.. ++.+.+.+|.+|..    ..|+++|+..|++|.++....
T Consensus        53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_          53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence            577777888877775    456788888888888643 35556667776665    467888888888888776554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.89  E-value=5.6e-05  Score=67.27  Aligned_cols=112  Identities=11%  Similarity=-0.008  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 004984          364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS  443 (721)
Q Consensus       364 ~~~~LLe~Lv~~a~~~lq~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~  443 (721)
                      ....+++++.+.-     +..+.+.+|.  ...+++++|+.+|++|.+.++..+.+.+|.+|.. |..            
T Consensus        11 ~A~~~~~kaa~~g-----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~-g~~------------   70 (133)
T d1klxa_          11 KAIQYYVKACELN-----EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYEN-GKY------------   70 (133)
T ss_dssp             HHHHHHHHHHHTT-----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-CSS------------
T ss_pred             HHHHHHHHHHHCC-----Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhh-ccc------------
Confidence            4556666654332     2345566664  4557899999999999999999999999987653 210            


Q ss_pred             cCCCcHHHHHHHhhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 004984          444 SVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL  510 (721)
Q Consensus       444 ~~~~~~~ay~~rg~~~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~----lg~~~eAl~~~~kAL~l~P  510 (721)
                                   .-.+.++|+..|.+|.+.  .++.+.+++|.+|..    .+++++|+..|++|.++..
T Consensus        71 -------------~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          71 -------------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             -------------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             -------------cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence                         001225666667777664  467888889998887    5689999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=8.4e-05  Score=65.91  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=69.6

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 004984          468 LDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLS  542 (721)
Q Consensus       468 ~~kAieLdP~~~~ay~~rg~~l~~lg~---~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~  542 (721)
                      |.+...-.|+ +.+.++.|-++....+   .++||..++.++..+|.  -++++++|..|.++|+|++|.+.++++|+++
T Consensus        25 ~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          25 VVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            3444333344 6788888888886544   56899999999998884  4889999999999999999999999999999


Q ss_pred             CCchhhhhhHHHHHHHHHHHHh
Q 004984          543 PDYRMFEGRVAASQLHMLVREH  564 (721)
Q Consensus       543 P~~~~~~~~~~a~~~~~~l~~~  564 (721)
                      |++      ..+..+...++..
T Consensus       104 P~n------~qA~~L~~~Ie~~  119 (124)
T d2pqrb1         104 RNN------KQVGALKSMVEDK  119 (124)
T ss_dssp             TTC------HHHHHHHHHHHHH
T ss_pred             CCc------HHHHHHHHHHHHH
Confidence            999      3455555555443

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.2e-05  Score=64.42  Aligned_cols=80  Identities=24%  Similarity=0.396  Sum_probs=58.7

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-----C------CCCC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVT-----G------SLNG  249 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-----g------~l~~  249 (721)
                      |+|+- +|..|.+.+.+ |..|+.++.||.+  ++.|+....|.|+  +|+..+|+.+++|++-     +      ..+ 
T Consensus         3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~--nV~s~iL~kViey~~~h~~~~~~~~~~~~fd-   78 (96)
T d2c9wc1           3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP-   78 (96)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECT--TCCHHHHHHHHHHHHHHHHTC----CCCCCC-
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECC--CCCHHHHHHHHHHHHhhccCcCCcCCCCCCc-
Confidence            45555 78889999998 8899999999964  4566777889999  5999999999999952     2      223 


Q ss_pred             CCHHHHHHHHHHhhhcCh
Q 004984          250 VTPNLLLEILIFANKFCC  267 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v  267 (721)
                      ++++.+.+|+.||++++|
T Consensus        79 i~~~~l~eLi~AAnyLd~   96 (96)
T d2c9wc1          79 IAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHhhhcC
Confidence            678899999999999875

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.00045  Score=58.74  Aligned_cols=79  Identities=23%  Similarity=0.363  Sum_probs=65.4

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc-----------C---CCC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-----------G---SLN  248 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt-----------g---~l~  248 (721)
                      |+|+- +|..|.+.+.+ |..|+.++.|+.+.+.|+. ..|.++  +|+..+|+.+++|++.           +   ..+
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~-~~Ipl~--~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efd   81 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE   81 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCc-CccccC--CCChHHHHHHHHHHHHhhhCcCcccccccCCCCC
Confidence            66766 77899999998 7799999999998776654 579999  5999999999999962           1   233


Q ss_pred             CCCHHHHHHHHHHhhhcCh
Q 004984          249 GVTPNLLLEILIFANKFCC  267 (721)
Q Consensus       249 ~i~~~~v~~LL~aAd~~~v  267 (721)
                       ++.+.+.+|+.||+++++
T Consensus        82 -vd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          82 -IPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             -CCHHHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHHhhhCC
Confidence             678889999999999875

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.00026  Score=60.97  Aligned_cols=91  Identities=13%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILIF  261 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~LL~a  261 (721)
                      |+|.|||+.|...+..|.... .+|..|+...+..+...++-|.   =+|..|+.||+|+.+|++. ++++ .+..++.=
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiD---Rdp~~F~~IL~ylR~G~l~-~p~~~~~~~l~~E   77 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAYDEE   77 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEe---CCHHHHHHHHHHHhcCccc-cCCCccHHHHHHH
Confidence            789999999999999997553 3555555555444556778777   6899999999999999988 5544 46788888


Q ss_pred             hhhcChhhH-H-HHHHHHH
Q 004984          262 ANKFCCERL-K-DACDRKL  278 (721)
Q Consensus       262 Ad~~~v~~L-~-~~C~~~L  278 (721)
                      |++|+|+.+ . .-|.+.+
T Consensus        78 a~fygi~~~~l~~cc~~~~   96 (105)
T d1nn7a_          78 LAFFGLIPEIIGDCCYEEY   96 (105)
T ss_dssp             HHHHTCCSCCBCHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHH
Confidence            999999763 2 3444444

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.83  E-value=0.00023  Score=61.14  Aligned_cols=88  Identities=10%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC-cCCcceEEeCCCCCCHHHHHHHhhhhccCCCCCCCHH-HHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM-ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI  260 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~S-~yF~amF~~~~~-Es~~~~I~l~~~~is~~~~~~lL~f~Ytg~l~~i~~~-~v~~LL~  260 (721)
                      |+|.|||+.|...+..|.... .+|..|+.+... .+...++-|.   =+|..|+.||+|+.+|++. ++++ .+..++.
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylR~g~l~-~p~~~~~~~l~~   79 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE   79 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEec---CCHHHHHHHHHHHccCCcc-cccccCHHHHHH
Confidence            789999999999999997654 366666655332 2334577776   7999999999999999998 6544 4677888


Q ss_pred             HhhhcChh-hHHHHHH
Q 004984          261 FANKFCCE-RLKDACD  275 (721)
Q Consensus       261 aAd~~~v~-~L~~~C~  275 (721)
                      -|++|+|+ .+++.|+
T Consensus        80 Ea~yygi~~~~l~~Cc   95 (103)
T d3kvta_          80 ELEFWGLDSNQVEPCC   95 (103)
T ss_dssp             HHHHHTCCGGGBCGGG
T ss_pred             HHHHcCCCHHHHHHHh
Confidence            89999997 4566664

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.23  E-value=0.0017  Score=55.12  Aligned_cols=82  Identities=11%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             EEEEEcCeEEEeehhhhhcC-CHHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHhhhhccC-CCCCCCH-HHHHHHH
Q 004984          184 VVFRIHEEKIECDRQKFAAL-SAPFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTG-SLNGVTP-NLLLEIL  259 (721)
Q Consensus       184 V~l~v~~~~~~aHr~vLAa~-S~yF~amF~~~~-~Es~~~~I~l~~~~is~~~~~~lL~f~Ytg-~l~~i~~-~~v~~LL  259 (721)
                      |+|.|||+.|...+..|... +.+|..|+..+. ..+...++-|.   =+|..|+.||+|+.|| .+. .+. ..+..++
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~IL~flR~~~~l~-~~~~~~~~~l~   78 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS   78 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEe---cCHHHHHHHHHHHhcCCCcC-CCCcccHHHHH
Confidence            78999999999999999864 557777776432 23445678886   6899999999999985 554 433 3478889


Q ss_pred             HHhhhcChhh
Q 004984          260 IFANKFCCER  269 (721)
Q Consensus       260 ~aAd~~~v~~  269 (721)
                      .-|++|+++.
T Consensus        79 ~Ea~y~gi~~   88 (100)
T d1t1da_          79 EEIKFYELGE   88 (100)
T ss_dssp             HHHHHTTCCH
T ss_pred             HHHHHcCCCH
Confidence            9999999986

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.68  Score=48.05  Aligned_cols=210  Identities=11%  Similarity=-0.016  Sum_probs=130.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH-H-----hhc--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 004984          421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE-R-----SLY--CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK  492 (721)
Q Consensus       421 lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~-r-----g~~--~~~~eAl~d~~kAieLdP~~~~ay~~rg~~l~~l  492 (721)
                      .|.......+...|...+.+.....+-....... +     ...  +..+.|...+.....-..+.....-..+.+ ...
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~~  298 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGT  298 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HHc
Confidence            4445555678888888777766554433322221 1     111  233566666655554444443333334444 446


Q ss_pred             CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 004984          493 QNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI  570 (721)
Q Consensus       493 g~~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~  570 (721)
                      ++...+...++.. .-.|.  +...|-.|..+.++|+.++|...|.++.. .++   |||..++..+....       . 
T Consensus       299 ~~~~~~~~~~~~l-~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LAa~~Lg~~~-------~-  365 (450)
T d1qsaa1         299 GDRRGLNTWLARL-PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVAAQRIGEEY-------E-  365 (450)
T ss_dssp             TCHHHHHHHHHHS-CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHHHHHTTCCC-------C-
T ss_pred             CChHHHHHHHHhc-CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCC---hHHHHHHHHcCCCC-------C-
Confidence            7888888777653 22332  45557788899999999999999999986 454   67777666543210       0 


Q ss_pred             HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 004984          571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD  650 (721)
Q Consensus       571 A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~Ly~  650 (721)
                            +  ........     ....+...|     -+.++..|..+|...+|.+-++.+++-.  +..-+...+.+-.+
T Consensus       366 ------~--~~~~~~~~-----~~~~~~~~~-----~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~  425 (450)
T d1qsaa1         366 ------L--KIDKAPQN-----VDSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFN  425 (450)
T ss_dssp             ------C--CCCCCCSC-----CCCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred             ------C--CcCCCCcc-----HHHhhhcCh-----HHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence                  0  00000000     011233333     2457888999999999999998887643  45667788999999


Q ss_pred             cCCHHHHHHHHHHH
Q 004984          651 TSHCEEGLRKAEES  664 (721)
Q Consensus       651 ~G~~deAl~~ye~A  664 (721)
                      .|.++.||....++
T Consensus       426 ~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         426 NQWWDLSVQATIAG  439 (450)
T ss_dssp             TTCHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHH
Confidence            99999999887776

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=6.5  Score=40.14  Aligned_cols=290  Identities=9%  Similarity=-0.018  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHhhcCC
Q 004984          381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE  460 (721)
Q Consensus       381 q~~la~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~A~~~lg~~~~~~G~~~~A~~~~~~aI~~~~~~~~ay~~rg~~~~  460 (721)
                      .+....|..+...+..|++.++.+.-.+ |+--|-+.|...-.+....++.  ....+..-|..+|+.+.+-.-|.....
T Consensus         4 ~~~r~~y~~a~~a~~~~~~~~~~~~~~~-L~dypL~pYl~~~~l~~~~~~~--~~~~i~~Fl~~~p~~P~~~~lr~~~l~   80 (450)
T d1qsaa1           4 DEQRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN   80 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHhh-hcCCCCHHHHHHHHHHhccccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            4455667788888888888887665444 3212333333222222222221  234566778889988766544422200


Q ss_pred             h---hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC----------------HHHHHHH
Q 004984          461 G---DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LA----------------LECLELR  518 (721)
Q Consensus       461 ~---~eAl~d~~kAieLdP~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~---P~----------------~~~~~~R  518 (721)
                      .   .+....|-+-..-.|.....-...+.++...|+-++|...+..+.--.   |+                ++.+..|
T Consensus        81 ~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R  160 (450)
T d1qsaa1          81 ELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER  160 (450)
T ss_dssp             HHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHhccCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHH
Confidence            0   011122222223457778888889999999999999999888777542   22                2222335


Q ss_pred             HHHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhh-------hHHHHHHHHHHHHhhhhhhHHHHHH-hh
Q 004984          519 FCFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEG-------RVAASQLHMLVREHIDNWTIADCWL-QL  577 (721)
Q Consensus       519 ~~~~~~lgd~eeAl~d~~k-------------al~L~P~~~~~~~-------~~~a~~~~~~l~~~~~~~~~A~~~~-~l  577 (721)
                      .......|++..|..-...             ++.-+|.......       ........+..+....+.+.|.... ++
T Consensus       161 ~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~  240 (450)
T d1qsaa1         161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL  240 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhh
Confidence            5556667777666554432             2223444321100       0000111111121222222222111 11


Q ss_pred             ------------------hhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 004984          578 ------------------YDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH  638 (721)
Q Consensus       578 ------------------~~~~~~~dd~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~  638 (721)
                                        .......+... +....+.............-..+.++ +.++.+++...++..-.-....+
T Consensus       241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al-~~~~~~~~~~~~~~l~~~~~~~~  319 (450)
T d1qsaa1         241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKD  319 (450)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSH
T ss_pred             hhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHH-HcCChHHHHHHHHhcCcccccHH
Confidence                              11111112222 33455555555444444444455544 55788888887766543333457


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH
Q 004984          639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF  675 (721)
Q Consensus       639 ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~  675 (721)
                      ...|..|-.+..+|+-++|-..|+++-. +|+|=.|.
T Consensus       320 r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~fYG~L  355 (450)
T d1qsaa1         320 EWRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPMV  355 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHHH
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHhc-CCChHHHH
Confidence            8889999999999999999999999875 78886553

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.29  E-value=9.6  Score=37.79  Aligned_cols=196  Identities=12%  Similarity=0.101  Sum_probs=94.5

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 004984          477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ  556 (721)
Q Consensus       477 ~~~~ay~~rg~~l~~lg~~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~eeAl~d~~kal~L~P~~~~~~~~~~a~~  556 (721)
                      +.+..|.....++++.....-|...   ++..-.+++...-....+...|.+++.+..++.++.+++..+..+.      
T Consensus        67 ~~~~~~k~~~~~l~~~~e~~la~i~---~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~------  137 (336)
T d1b89a_          67 NSTRTWKEVCFACVDGKEFRLAQMC---GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT------  137 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHT---TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCcHHHHHHHH---HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHH------
Confidence            4555666666666766665543221   1111123443333445667778888888888877777666532221      


Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 004984          557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS  636 (721)
Q Consensus       557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~dd~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~  636 (721)
                      .+..+-..-......+   -+-..|..++       ..+++...- ...+|--...++.+.|.+++|+..   .+++-|+
T Consensus       138 ~L~~lyak~~~~kl~e---~l~~~s~~y~-------~~k~~~~c~-~~~l~~elv~Ly~~~~~~~~A~~~---~i~~~~~  203 (336)
T d1b89a_         138 ELAILYSKFKPQKMRE---HLELFWSRVN-------IPKVLRAAE-QAHLWAELVFLYDKYEEYDNAIIT---MMNHPTD  203 (336)
T ss_dssp             HHHHHHHTTCHHHHHH---HHHHHSTTSC-------HHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTT
T ss_pred             HHHHHHHHhChHHHHH---HHHhccccCC-------HHHHHHHHH-HcCChHHHHHHHHhcCCHHHHHHH---HHHcchh
Confidence            1111111111111110   1111122223       233332221 223455566777888888877654   4444444


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 004984          637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDAL  702 (721)
Q Consensus       637 ~~ea~~~~G~~Ly~~G~~deAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (721)
                      ..+...... +..+.++-+..++.-.--+.-+|.+-   .....-..+.+||   +.||+.+|...
T Consensus       204 ~~~~~~f~e-~~~k~~N~e~~~~~i~~yL~~~p~~i---~~lL~~v~~~~d~---~r~V~~~~k~~  262 (336)
T d1b89a_         204 AWKEGQFKD-IITKVANVELYYRAIQFYLEFKPLLL---NDLLMVLSPRLDH---TRAVNYFSKVK  262 (336)
T ss_dssp             TCCHHHHHH-HHHHCSSTHHHHHHHHHHHHHCGGGH---HHHHHHHGGGCCH---HHHHHHHHHTT
T ss_pred             hhhHHHHHH-HHHccCChHHHHHHHHHHHHcCHHHH---HHHHHHhccCCCH---HHHHHHHHhcC
Confidence            333222222 24455555554444444455566654   3344455667777   45677666543

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.25  Score=36.63  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                      +..+.+.+|+.||++++++.|.+.|++.++..+.
T Consensus        10 ~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ik   43 (55)
T d1fs1b1          10 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK   43 (55)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence            6688999999999999999999999999999885

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.5  Score=35.59  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHhhhhcc
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT  244 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~Es~~~~I~l~~~~is~~~~~~lL~f~Yt  244 (721)
                      |+|+- +|..|.+.+. .|..|...+.|+.+.-    ...|.|+  +|+..+|+.+++|++.
T Consensus         3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~~----~~~Ipl~--~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTH   57 (61)
T ss_dssp             EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHH-HHHHhHHHHHHHhcCC----CCCcccC--CcCHHHHHHHHHHHHH
Confidence            55555 7788999888 5688999999997532    3468998  5999999999999874

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.11  E-value=0.45  Score=36.97  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHhhhcChhhHHHHHHHHHHhhcC
Q 004984          250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA  283 (721)
Q Consensus       250 i~~~~v~~LL~aAd~~~v~~L~~~C~~~L~~~l~  283 (721)
                      +..+.+.+|+.||++++++.|.+.|++.++..+.
T Consensus        11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ik   44 (70)
T d1nexa1          11 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR   44 (70)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence            5688999999999999999999999999999885

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.41  E-value=0.56  Score=36.46  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHhhhhccC
Q 004984          184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTG  245 (721)
Q Consensus       184 V~l~v-~~~~~~aHr~vLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~is~~~~~~lL~f~Ytg  245 (721)
                      |+|+- +|..|.+.+. .|..|..-+.|+.....    +.....|.|+  +|+..+|+.+++|++.-
T Consensus         3 I~L~SsDg~~F~v~~~-~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~--~V~s~iL~kVieyc~~H   66 (72)
T d1nexa2           3 VVLVSGEGERFTVDKK-IAERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHH   66 (72)
T ss_dssp             EEEECTTSCEEEEEHH-HHTTSHHHHHTC-------------CEEECT--TCCHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCCEEEecHH-HHHHHHHHHHHHHhcCccccccCCCCcccCC--CcCHHHHHHHHHHHHHc
Confidence            66666 7789999888 56889999999964322    2333579998  59999999999999753