Citrus Sinensis ID: 004993

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720

MSAHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY

ccHHHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEEccccHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHccccccHHccccEEEEEcccccccHHHHHHHHHHcccccccccHHccccccEEEEccEEEEcHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccEEEEEEEccccEEEEEcHHHHcccccccEEEEEccccEEcccccccccccccEEEEccccccccccccccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccccccccEEEEcccccccHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEEEEEEEEccccccEEEccccccccEEEEEEEEccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccc

ccHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHccEEEEccccEEHHHHHHHHHHHHHHccccccccccEEEEcHHHHHHHHHccccccEEEEEEEEcccccEEEEcHHHHHcccccEEEEEEccccEccccccccccHHcEEEEccccccccccccccHHHEEEEccccccHHHccccccccccccEEEcccccHccccccccccccccEEEcccccccccccccHHHHHHccEEEccccccHccccccHccHHHHHEEEcccccHHHccHHHHHHHHHccEEEccccccHcccccccccccEEEccccccHcccccccccccHcccccccEEEccccHHHHccccccccHHHHHHHcccccccccccccHccccccccccEEEEccccccHHEcccccccEEEEEccccccccccccEEEEEEEEccccccccccccEEEEcccccccEEEEEEcccccccccccccccEEEEEEEEEEccccccccEEEEEcEEEEEEEccccccccccccccccccccccccccEEEEEEc

MSAHLRQELLSTLlnddgnvkiipniglnfeskrltRKKVLIVFDDVTDRKQIEFLIGEldsfasgsliiiTTRDKQVLINCWADKIYEVKELADADALKLFSrcafrqdhpvACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKletvphmeiQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINyfdasdffpeiglgrlvdksLITISCNKIRMHDLLQDMGRKIDREAainnpgkcrrlwhhkDVNEVLSKNLGTEAIEGILLDMSKVNEihlnsstfkkmprlrflkfhgenkfkishfegeAFTELRYLYwdgypskslppvirldTLISLQLRESKVEQlwdgvpnlvnlkEIDLSYSrqlkklpdlsqaRNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNcskllslpelpcnlfsvgvrrctsLEALSSFSFLFsamsphndqyfnlsdclklDQNELKGIAEDALQKIQQKATSWWMKLkeetdykykpscggiyfpgseipkwfrfssmgssiefkpqsdwinneyLGIAFCAVLRCrirfkipshdwyvrTIDYvesdhlfmgyyffhgdkgdsrQDFEKALFKIYFYnhtgramrccgvkkcgirlltagddflgINLRsqqnfysneeeephplkhvgfvy

MSAHLRQELLSTllnddgnvkiipniglnfeskrltrkKVLIVFDDVTDRKQIEFLIgeldsfasgsLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAitkletvphmeiqDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINnpgkcrrlwhhKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNsstfkkmprLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVeqlwdgvpnlVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFkipshdwyvRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFysneeeephplkhvgfvy

MSAHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTslealssfsflfsamsPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY

********LLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRS**********************

MSAHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL*GIAEDALQKIQQKATSW***********YKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLT***************************KHVGFVY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		720	2.2.26 [Sep-21-2011]
Q40392		1144	TMV resistance protein N	N/A	no	0.665	0.418	0.371	5e-77
O82500		1095	Putative disease resistan	no	no	0.904	0.594	0.300	3e-72
O23530		1301	Protein SUPPRESSOR OF npr	no	no	0.615	0.340	0.384	1e-70
Q9SZ67		1895	Probable WRKY transcripti	no	no	0.652	0.248	0.362	1e-67
Q9FL92		1372	Probable WRKY transcripti	no	no	0.681	0.357	0.323	2e-63
Q9FH83		1288	Probable WRKY transcripti	no	no	0.640	0.357	0.328	4e-60
Q9FKN7		1613	Protein DA1-related 4 OS=	no	no	0.951	0.424	0.261	7e-53
Q9FW44		787	Disease resistance protei	no	no	0.602	0.551	0.238	5e-16
Q9SZA7		816	Probable disease resistan	no	no	0.616	0.544	0.246	5e-15
Q9LVT1		623	Putative disease resistan	no	no	0.648	0.749	0.234	4e-14

>sp\|Q40392\|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	Back alignment and function desciption

 Score =  289 bits (740), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 198/533 (37%), Positives = 293/533 (54%), Gaps = 54/533 (10%)

Query: 5   LRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQ-IEFLIGELDSF 63
           L+  LLS LL +  N     + G +  + RL  KKVLIV DD+ ++   +E+L G+LD F
Sbjct: 262 LQNALLSELLREKANYNNEED-GKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWF 320

Query: 64  ASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKI 123
            +GS IIITTRDK ++     D IYEV  L D ++++LF + AF ++ P   + +L+ ++
Sbjct: 321 GNGSRIIITTRDKHLIEK--NDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEV 378

Query: 124 IKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMF 183
           + YA+G+PLALKV G  L   R  EW+SAI  ++   +  I D LKISYDGL+  +Q MF
Sbjct: 379 VNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMF 438

Query: 184 LDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITIS-CNKIRMHDLLQDMGRKI 242
           LDIAC+  G  KD+++   ++     E GL  L+DKSL+ IS  N+++MHDL+QDMG+ I
Sbjct: 439 LDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYI 498

Query: 243 DREAAIN---NPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKM 299
                +N   +PG+  RLW  K+V EV+S N GT A+E I +  S  + +  ++   K M
Sbjct: 499 -----VNFQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSNQAVKNM 552

Query: 300 PRLRFLKF-HGENKFKISHFEGEAFTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKV 358
            RLR          + I +        LR      YP +S P    L  L+ LQLR + +
Sbjct: 553 KRLRVFNMGRSSTHYAIDYLP----NNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSL 608

Query: 359 EQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKL 418
             LW    +L +L+ IDLS+S++L + PD +   NLE + L  CS+L E H S+   SK+
Sbjct: 609 RHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKV 668

Query: 419 VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE-------------------- 458
           + L +  CK+L R P    E  SL+ L L  C +L ++PE                    
Sbjct: 669 IGLYLNDCKSLKRFPCVNVE--SLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRE 726

Query: 459 ---SII----NLSKLELLHLKNCSKLLSLPELPC---NLFSVGVRRCTSLEAL 501
              SI     +++KL L ++KN   L++LP   C   +L S+ V  C+ LE+L
Sbjct: 727 LPSSIFQYKTHVTKLLLWNMKN---LVALPSSICRLKSLVSLSVSGCSKLESL 776

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp\|O82500\|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1	Back alignment and function description

>sp\|O23530\|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3	Back alignment and function description

>sp\|Q9SZ67\|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1	Back alignment and function description

>sp\|Q9FL92\|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1	Back alignment and function description

>sp\|Q9FH83\|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3	Back alignment and function description

>sp\|Q9FKN7\|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2	Back alignment and function description

>sp\|Q9FW44\|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2	Back alignment and function description

>sp\|Q9SZA7\|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3	Back alignment and function description

>sp\|Q9LVT1\|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		720
255564976		944	TMV resistance protein N, putative [Rici	0.888	0.677	0.394	1e-116
255537139		1137	leucine-rich repeat-containing protein,	0.925	0.585	0.348	1e-111
224127917		1470	tir-nbs-lrr resistance protein [Populus	0.693	0.339	0.451	1e-110
255561510		1018	TMV resistance protein N, putative [Rici	0.861	0.609	0.4	1e-109
255544956		1403	leucine-rich repeat containing protein,	0.655	0.336	0.457	1e-109
225460354		1174	PREDICTED: TMV resistance protein N-like	0.686	0.420	0.44	1e-107
359496026		1250	PREDICTED: TMV resistance protein N-like	0.658	0.379	0.438	1e-107
224145021		1561	tir-nbs-lrr resistance protein [Populus	0.694	0.320	0.434	1e-106
359495289		1133	PREDICTED: TMV resistance protein N-like	0.636	0.404	0.462	1e-105
105922680		1282	TIR-NBS-LRR-TIR type disease resistance	0.9	0.505	0.367	1e-104

>gi\|255564976\|ref\|XP_002523481.1\| TMV resistance protein N, putative [Ricinus communis] gi\|223537309\|gb\|EEF38940.1\| TMV resistance protein N, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 286/725 (39%), Positives = 394/725 (54%), Gaps = 85/725 (11%)

Query: 5   LRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFA 64
           L+++L S LL  D NV     I   F+  RL  +KVLIV DDV + +Q+E L GE + F 
Sbjct: 262 LQRQLFSKLLGQD-NVNYAEGI---FDKSRLKHRKVLIVLDDVNNLRQLENLAGEHNWFG 317

Query: 65  SGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKII 124
            GS II+T+RDK VL N   D IY++++L   +AL+LFS  AFRQ+ P A YM+L+ ++I
Sbjct: 318 PGSRIILTSRDKDVLKN-KTDAIYKIEDLDHHEALQLFSLNAFRQECPKADYMKLSKRVI 376

Query: 125 KYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFL 184
            YA+G PL LKVLG FL  R  +EWESA+ KLE   + EIQ+VLK+SYDGLD  E+ +FL
Sbjct: 377 NYAKGNPLGLKVLGSFLYQRNIKEWESALHKLERSTNKEIQNVLKVSYDGLDDEEKDIFL 436

Query: 185 DIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDR 244
           D+AC+F G ++DFV    +   F  +I +  LV KSL+TIS N + +H+LLQ MG  I R
Sbjct: 437 DVACFFNGEDRDFVTRILNGCGFSADIAISVLVSKSLLTISNNTLAIHNLLQQMGWGIVR 496

Query: 245 EAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRF 304
           + +   PG+  RL   +DV  VLSKN GTEAIEGI LDMSK  +++L+   F++M  LR 
Sbjct: 497 QESTKEPGRRSRLCTSEDVVHVLSKNTGTEAIEGIYLDMSKSRKVYLSPKAFERMHNLRL 556

Query: 305 LKFHGENK-----FKISHFEG-EAFTE-LRYLYWDGYPSKSLPPVIRLDTLISLQLRESK 357
           LKFH          K+   EG E+  + L  L+W+GYP KSLP     + L+ L +  S 
Sbjct: 557 LKFHHSFSPIAMYSKVYLPEGLESLPDKLSCLHWNGYPLKSLPFNFCAEYLVELSMPHSH 616

Query: 358 VEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSK 417
           V+ LW+G   L  L  I+LS S+ L +LPD S+A NLE + L+ C SL +  SSI YL+K
Sbjct: 617 VKFLWEGDQCLKKLNSINLSDSQHLIRLPDFSEALNLEYINLEGCISLAQVPSSIGYLTK 676

Query: 418 LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 477
           L  L+++ CK L  +P SL +L SL++L LSGCSNL    +   N+ +L       C   
Sbjct: 677 LDILNLKDCKELRSIP-SLIDLQSLRKLNLSGCSNLNHCQDFPRNIEEL-------CLDG 728

Query: 478 LSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 537
            ++ ELP            S+E LS  +F            +++ +C +LDQN    IA 
Sbjct: 729 TAIEELP-----------ASIEDLSELTF------------WSMENCKRLDQNSCCLIAA 765

Query: 538 DALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDW 597
           DA + IQ+ AT+  +       +          FPG+EIP W  +   GSSI  K   +W
Sbjct: 766 DAHKTIQRTATAAGIHSLPSVSFG---------FPGTEIPDWLLYKETGSSITVKLHPNW 816

Query: 598 INN--EYLGIAFCAVLR-------------CRIRFKIPSHDWYVRTI------------D 630
             N   +LG A C V++             C   FK    D +V               D
Sbjct: 817 HRNPSRFLGFAVCCVVKFTHFIDINNIYVICECNFKTNHDDHHVVNCFLQGLNNGKDESD 876

Query: 631 YVESDHLFMGYYF------FHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRL 684
            V+S H+++GY F        G        +E+  FK Y     G  +    V KCG+ L
Sbjct: 877 LVKSQHVYIGYDFGIYLRAVKGTYPGRLYHYEEVTFKFYAKKMVGHTVAWRKVDKCGVHL 936

Query: 685 LTAGD 689
           L A D
Sbjct: 937 LYAQD 941

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537139\|ref\|XP_002509636.1\| leucine-rich repeat-containing protein, putative [Ricinus communis] gi\|223549535\|gb\|EEF51023.1\| leucine-rich repeat-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224127917\|ref\|XP_002329209.1\| tir-nbs-lrr resistance protein [Populus trichocarpa] gi\|222870990\|gb\|EEF08121.1\| tir-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255561510\|ref\|XP_002521765.1\| TMV resistance protein N, putative [Ricinus communis] gi\|223538978\|gb\|EEF40575.1\| TMV resistance protein N, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255544956\|ref\|XP_002513539.1\| leucine-rich repeat containing protein, putative [Ricinus communis] gi\|223547447\|gb\|EEF48942.1\| leucine-rich repeat containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225460354\|ref\|XP_002263146.1\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359496026\|ref\|XP_002277166.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224145021\|ref\|XP_002325498.1\| tir-nbs-lrr resistance protein [Populus trichocarpa] gi\|222862373\|gb\|EEE99879.1\| tir-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495289\|ref\|XP_002276927.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|105922680\|gb\|ABF81430.1\| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		720
TAIR\|locus:2175991		1294	AT5G17680 [Arabidopsis thalian	0.645	0.359	0.386	7.5e-84
TAIR\|locus:2195468		1017	AT1G63880 [Arabidopsis thalian	0.630	0.446	0.381	1.5e-77
TAIR\|locus:2024588		997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.654	0.472	0.373	6.6e-77
TAIR\|locus:2195478		1031	AT1G63870 [Arabidopsis thalian	0.627	0.438	0.385	8.5e-77
TAIR\|locus:2162439		1008	AT5G22690 [Arabidopsis thalian	0.638	0.456	0.402	1.9e-76
TAIR\|locus:2170488		1205	AT5G46260 [Arabidopsis thalian	0.659	0.394	0.371	1e-75
TAIR\|locus:2174900		968	AT5G40060 [Arabidopsis thalian	0.658	0.489	0.391	1.7e-75
TAIR\|locus:2146243		900	AT5G18360 [Arabidopsis thalian	0.655	0.524	0.398	1.7e-75
TAIR\|locus:2170408		1139	AT5G46270 [Arabidopsis thalian	0.661	0.417	0.376	9e-75
UNIPROTKB\|Q40392		1144	N "TMV resistance protein N" [	0.648	0.408	0.385	9.5e-75

TAIR\|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 817 (292.7 bits), Expect = 7.5e-84, Sum P(2) = 7.5e-84
 Identities = 183/473 (38%), Positives = 280/473 (59%)

Query:    29 NFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIY 88
             N   +R   K V IV DDV   +Q+  L+ E   F  GS II+TTRD+ +L++   + +Y
Sbjct:   279 NIIKERFRHKMVFIVLDDVDRSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVY 338

Query:    89 EVKELADADALKLFSRCAFRQDHPVAC-YMELTYKIIKYAQGVPLALKVLGLFLSARRKE 147
             +VK L   +AL+LF   AFR++  +   + EL+ + + YA G+PLAL+VLG FL  R + 
Sbjct:   339 KVKCLPKKEALQLFCNYAFREEIILPHGFEELSVQAVNYASGLPLALRVLGSFLYRRSQI 398

Query:   148 EWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLDIACYFVGANKDFVINYFDASDF 207
             EWES + +L+T PH +I +VL++SYDGLD  E+A+FL I+C++     D+V    D   +
Sbjct:   399 EWESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCGY 458

Query:   208 FPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEVL 267
               EIG+  L +KSLI  S   +++HDLL+ MGR++ R+ A+NNP +   LW  +D+  +L
Sbjct:   459 AAEIGITILTEKSLIVESNGCVKIHDLLEQMGRELVRQQAVNNPAQRLLLWDPEDICHLL 518

Query:   268 SKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFH-----GENKFKISHFEGEA 322
             S+N GT+ +EGI L++S+++E+  +   F+ +  L+ L F+     GE +  + +     
Sbjct:   519 SENSGTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFYDLSFDGETRVHLPNGLSYL 578

Query:   323 FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQL 382
               +LRYL WDGYP K++P     + L+ L +  S +E+LWDG+  L NLK++DLS  + L
Sbjct:   579 PRKLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYL 638

Query:   383 KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISL 442
              ++PDLS+A NLE L L  C SLVE   SI+ L  L    +  C  L  +P  +  L SL
Sbjct:   639 VEVPDLSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGII-LKSL 697

Query:   443 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC 495
             + + +SGCS+L+  PE   N  +L L   K      S+  L C L  + +  C
Sbjct:   698 ETVGMSGCSSLKHFPEISWNTRRLYLSSTKIEELPSSISRLSC-LVKLDMSDC 749

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR\|locus:2195468 AT1G63880 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2195478 AT1G63870 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01250003	tir-nbs-lrr resistance protein (1470 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		720
PLN03210		1153	PLN03210, PLN03210, Resistant to P	1e-102
pfam00931		285	pfam00931, NB-ARC, NB-ARC domain	2e-22
PLN03210		1153	PLN03210, PLN03210, Resistant to P	2e-14
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

 Score =  337 bits (866), Expect = e-102
 Identities = 203/495 (41%), Positives = 289/495 (58%), Gaps = 21/495 (4%)

Query: 1   MSAHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGEL 60
           M  HL++  LS +L D  ++KI     L    +RL  +KVLI  DD+ D+  ++ L G+ 
Sbjct: 263 MKLHLQRAFLSEIL-DKKDIKIYH---LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT 318

Query: 61  DSFASGSLIIITTRDKQVLINCWADKIYEVKELADADALKLFSRCAFRQDHPVACYMELT 120
             F SGS II+ T+DK  L     D IYEV   ++  AL++F R AF+++ P   +MEL 
Sbjct: 319 QWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELA 378

Query: 121 YKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGL-DYVE 179
            ++   A  +PL L VLG +L  R KE+W   + +L      +I+  L++SYDGL +  +
Sbjct: 379 SEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKD 438

Query: 180 QAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMG 239
           +A+F  IAC F G   + +      SD    IGL  LVDKSLI +  + + MH LLQ+MG
Sbjct: 439 KAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMG 498

Query: 240 RKIDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKM 299
           ++I R A  N PG+   L   KD+ +VL  N GT+ + GI LD+ +++E+H++ + FK M
Sbjct: 499 KEIVR-AQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557

Query: 300 PRLRFLKFH---GENKFKISHFEGEAF----TELRYLYWDGYPSKSLPPVIRLDTLISLQ 352
             L FLKF+    + K ++     E F     +LR L WD YP + +P   R + L+ LQ
Sbjct: 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQ 617

Query: 353 LRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 412
           ++ SK+E+LWDGV +L  L+ IDL  S+ LK++PDLS A NLE L L  CSSLVE  SSI
Sbjct: 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI 677

Query: 413 QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 472
           QYL+KL  LDM  C+NL  LP+ +  L SL RL LSGCS L+  P+   N+S L+L    
Sbjct: 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE-- 734

Query: 473 NCSKLLSLPELPCNL 487
                 ++ E P NL
Sbjct: 735 -----TAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl\|CDD\|216202 pfam00931, NB-ARC, NB-ARC domain	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		720
PLN03210		1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.96
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.72
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.63
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.58
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.55
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.49
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.4
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.39
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.92
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.84
PLN03150		623	hypothetical protein; Provisional	98.78
PLN03150		623	hypothetical protein; Provisional	98.65
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.57
PRK15386		426	type III secretion protein GogB; Provisional	98.53
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.38
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.33
PRK15386		426	type III secretion protein GogB; Provisional	98.32
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.28
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.22
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.18
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	98.12
PRK04841		903	transcriptional regulator MalT; Provisional	97.97
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.77
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.72
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.71
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.61
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.56
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.44
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.44
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.37
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.29
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.25
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.19
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.14
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.71
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.68
PRK06893		229	DNA replication initiation factor; Validated	96.48
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.42
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.33
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
PF05729		166	NACHT: NACHT domain	96.09
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.02
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.84
PRK00411		394	cdc6 cell division control protein 6; Reviewed	95.82
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.71
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	95.64
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.18
KOG4341		483	consensus F-box protein containing LRR [General fu	95.15
KOG4341		483	consensus F-box protein containing LRR [General fu	95.13
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.08
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	93.83
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	93.67
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	93.42
KOG1947		482	consensus Leucine rich repeat proteins, some prote	93.23
PF13173		128	AAA_14: AAA domain	92.13
PRK07471		365	DNA polymerase III subunit delta'; Validated	91.87
COG3899		849	Predicted ATPase [General function prediction only	91.4
PRK05564		313	DNA polymerase III subunit delta'; Validated	91.13
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.93
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	90.46
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.3
PRK09087		226	hypothetical protein; Validated	90.28
KOG1947		482	consensus Leucine rich repeat proteins, some prote	89.8
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.76
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.6
KOG0473		326	consensus Leucine-rich repeat protein [Function un	89.08
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	88.73
PRK08727		233	hypothetical protein; Validated	87.65
PRK13342		413	recombination factor protein RarA; Reviewed	87.04
KOG0473		326	consensus Leucine-rich repeat protein [Function un	85.86
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	85.35
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	85.31
KOG4308		478	consensus LRR-containing protein [Function unknown	84.14
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	83.64
KOG3864		221	consensus Uncharacterized conserved protein [Funct	83.52
KOG4308		478	consensus LRR-containing protein [Function unknown	83.47
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	83.32
PRK09112		351	DNA polymerase III subunit delta'; Validated	83.08
PRK06620		214	hypothetical protein; Validated	82.8
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	82.7
COG3903		414	Predicted ATPase [General function prediction only	82.44
KOG3864		221	consensus Uncharacterized conserved protein [Funct	82.04
smart00370		26	LRR Leucine-rich repeats, outliers.	81.42
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	81.42
PRK08084		235	DNA replication initiation factor; Provisional	80.41

>PLN03210 Resistant to P	Back alignment and domain information

Probab=100.00  E-value=1.8e-83  Score=780.78  Aligned_cols=672  Identities=35%  Similarity=0.535  Sum_probs=542.1

Q ss_pred             hHHHHHHHHHHhCCCCCCccccccchHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhc
Q 004993            3 AHLRQELLSTLLNDDGNVKIIPNIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINC   82 (720)
Q Consensus         3 ~~lq~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~   82 (720)
                      .++|+++++++++.....+.    ....++++|++||+||||||||+.++|+.+++...|+++|||||||||+++++..+
T Consensus       265 ~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~  340 (1153)
T PLN03210        265 LHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH  340 (1153)
T ss_pred             HHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence            56889999999887643311    23678999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhcCCCc
Q 004993           83 WADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHM  162 (720)
Q Consensus        83 ~~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~  162 (720)
                      +++++|+|+.|+++|||+||+++||++..+++++++++++|+++|+|+||||+++|++|++++.++|+.++++|+..++.
T Consensus       341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~  420 (1153)
T PLN03210        341 GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDG  420 (1153)
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccH
Confidence            88999999999999999999999999888888899999999999999999999999999999999999999999998889


Q ss_pred             hHHHHHHHhhcCCCh-hhhhhhcccccccCCCCHHHHHHHHHhCCCCcccchhhhhcccceEEeCCeEEeeHHHHHHHHH
Q 004993          163 EIQDVLKISYDGLDY-VEQAMFLDIACYFVGANKDFVINYFDASDFFPEIGLGRLVDKSLITISCNKIRMHDLLQDMGRK  241 (720)
Q Consensus       163 ~i~~~l~~syd~L~~-~~k~~fl~~a~f~~~~~~~~l~~~w~~~g~~~~~~~~~L~~~~li~~~~~~~~mHdLl~d~~~~  241 (720)
                      +|.++|++|||+|++ .+|.||+||||||.+++++++..++.++++.++.+++.|++++||+++.++++|||++|+||++
T Consensus       421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~  500 (1153)
T PLN03210        421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKE  500 (1153)
T ss_pred             HHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHH
Confidence            999999999999986 5999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             HhhhhcccCCCcEEECcCcchHHHHHhhccCCcceEEEEeecCCccceecCchhhCCCCCccEEEeeCCCCcc----ccc
Q 004993          242 IDREAAINNPGKCRRLWHHKDVNEVLSKNLGTEAIEGILLDMSKVNEIHLNSSTFKKMPRLRFLKFHGENKFK----ISH  317 (720)
Q Consensus       242 i~~~~~~~~~~~~~rL~~~~~~~~~l~~~~~~~~i~~i~l~ls~~~~~~~~~~~f~~l~~L~~L~L~~~~~~~----~~~  317 (720)
                      ++++++ .+|++++|+|.++++++++..++|+..+++|.+|++......+...+|.+|++|+.|.+..+....    ...
T Consensus       501 i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~  579 (1153)
T PLN03210        501 IVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH  579 (1153)
T ss_pred             HHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence            999987 789999999999999999999999999999999999999999999999999999999997653211    112


Q ss_pred             CC--ccc-ccCceEEEecCCCCCCCCCCCCCCCccEEEccCCCcccccCCCCCCCCccEEecCCCcCCCCCCCCcCCccc
Q 004993          318 FE--GEA-FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQLKKLPDLSQARNL  394 (720)
Q Consensus       318 ~~--~~~-l~~L~~L~l~~~~~~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~L~~L~~L~Ls~n~~~~~~p~l~~l~~L  394 (720)
                      .+  +.. +.+|+.|+|.+++++.+|..+.+.+|+.|+|++|++..+|.++..+++|+.|+|++|..+..+|.++.+++|
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~L  659 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNL  659 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcc
Confidence            22  222 567999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             ceeecccccccccccccccCCcccceeeccccccccccccccCCCCCCcEEeccCC------------------------
Q 004993          395 ENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC------------------------  450 (720)
Q Consensus       395 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n------------------------  450 (720)
                      +.|++++|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|                        
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE  738 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence            999999999999999999999999999999887777777654 4555555555444                        


Q ss_pred             --------------------------------------------------CCCCccchhccCCCCCCEEcccCCcCcCcC
Q 004993          451 --------------------------------------------------SNLRRIPESIINLSKLELLHLKNCSKLLSL  480 (720)
Q Consensus       451 --------------------------------------------------~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l  480 (720)
                                                                        .....+|..++++++|+.|+|++|..++.+
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence                                                              334446666777888888888888888888


Q ss_pred             CCC--CCCccEEeccCCCc----------cccccCcccccccCCCCCccccccccccccch-hhHHHHHHHHHHHHHHhh
Q 004993          481 PEL--PCNLFSVGVRRCTS----------LEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ-NELKGIAEDALQKIQQKA  547 (720)
Q Consensus       481 p~l--p~~L~~L~~~~~~~----------L~~L~l~~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~~  547 (720)
                      |..  +++|+.|.+++|..          |+.|++++|.+. .+|.++..+++|+.|++++ |.+++. |..+..++.+.
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~  896 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLE  896 (1153)
T ss_pred             CCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCC
Confidence            753  56788888888744          556777788775 4566677788888887776 344432 22222222110


Q ss_pred             ---hh-------------------------------------hhhhhhhccccCCCCCeeEEecCCCCCCCCccccCCCc
Q 004993          548 ---TS-------------------------------------WWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGS  587 (720)
Q Consensus       548 ---~~-------------------------------------~~~~l~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~  587 (720)
                         ..                                     .|.++..............+++||.++|+||.|++.|+
T Consensus       897 ~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~  976 (1153)
T PLN03210        897 TVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGA  976 (1153)
T ss_pred             eeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccc
Confidence               00                                     01111110001111223457899999999999999999


Q ss_pred             EEE-EecCCCCCcCCcceeEEEEEEeeeee--------------eeeCCCceEEeecccccCCeEEEEEEecccC-----
Q 004993          588 SIE-FKPQSDWINNEYLGIAFCAVLRCRIR--------------FKIPSHDWYVRTIDYVESDHLFMGYYFFHGD-----  647 (720)
Q Consensus       588 ~i~-~~lp~~~~~~~~~g~a~c~v~~~~~~--------------~~~~~~~~~~~~~~~~~sdh~~~~y~~~~~~-----  647 (720)
                      +++ |.+|+.|+...|.||++|+|++|...              +....+...    ....++|+|+.|......     
T Consensus       977 sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 1052 (1153)
T PLN03210        977 SLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHF----DSPYQPHVFSVTKKGSHLVIFDC 1052 (1153)
T ss_pred             eeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcc----ccCCCceeEeeeccccceEEecc
Confidence            998 99999999989999999999974432              111111111    124677888887764321     


Q ss_pred             -----CCCC---cchhhhheeeEEeeccccccccceEEEEeccEEEeecCC
Q 004993          648 -----KGDS---RQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDD  690 (720)
Q Consensus       648 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vk~cG~~liy~~~~  690 (720)
                           .++.   ....+.+.++|.+++..    ..++||+||||++|+.+.
T Consensus      1053 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210       1053 CFPLNEDNAPLAELNYDHVDIQFRLTNKN----SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred             cccccccccchhccCCceeeEEEEEecCC----CCeEEEeeeEEEeccCCC
Confidence                 0000   01123345666665422    237999999999996654

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG3899 Predicted ATPase [General function prediction only]	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG3903 Predicted ATPase [General function prediction only]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		720
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		7e-08

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Iteration: 1

Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 368 LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 426 LVNL+ + L ++ ++ LP ++ +NL++L ++ S L +I +L KL LD+R C Sbjct: 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGC 239 Query: 427 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP----E 482 L P L+RL L CSNL +P I L++LE L L+ C L LP + Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 Query: 483 LPCN 486 LP N Sbjct: 300 LPAN 303

PyMOL of 4fcg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		720
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-29
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	9e-28
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	9e-09
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-08
2a5y_B		549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-24
1z6t_A		591	APAF-1, apoptotic protease activating factor 1; ca	4e-22
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	4e-21
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	5e-20
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-14
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	7e-14
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	6e-13
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-14
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	9e-13
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-09
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	6e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	3e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A		466	Internalin A; bacterial infection, extracellular r	9e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	6e-10
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-10
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	8e-06
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	4e-08
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	8e-05
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-08
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-08
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-06
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  124 bits (311), Expect = 3e-29
 Identities = 80/464 (17%), Positives = 144/464 (31%), Gaps = 121/464 (26%)

Query: 2   SAHLRQELLSTLL-----NDDGNVKIIPNIGLNFES--KRLTR-------KKVLIVFDDV 47
           S     E+L  LL     N         NI L   S    L R       +  L+V  +V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 48  TDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWADKIYEV------KELADADALKL 101
            + K         ++F     I++TTR KQV     A     +        L   +   L
Sbjct: 254 QNAK-------AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 102 FSRCAF--RQDHP-VACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLET 158
             +      QD P                   P  L ++   +       W+      + 
Sbjct: 307 LLKYLDCRPQDLPREVL------------TTNPRRLSIIAESIR-DGLATWD----NWKH 349

Query: 159 VPHMEIQDVLKISYDGLDYVE-QAMFLDIACYFVGAN---KDFVINYFDASDFFPEIGLG 214
           V   ++  +++ S + L+  E + MF  ++ +   A+       + +FD       + + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 215 RLVDKSLITISCNK--IRMHDLLQDMGRKIDREAAINNPGKCRRLWHHKDVNEV-LSKNL 271
           +L   SL+     +  I +  +  ++  K++ E A+          H   V+   + K  
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----------HRSIVDHYNIPKTF 459

Query: 272 GTEAIEGILLDMSKVNEI--HL----NSSTFKKMPRLRFLKFHGENKF---KISHFEGEA 322
            ++ +    LD    + I  HL    +         + FL F     F   KI H     
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR----FLEQKIRH----- 509

Query: 323 FTELRYLYWDGYPSKSLPPVIRLDTLISLQLRESKVEQLWDGVPNLVNLKEIDLSYSRQL 382
                    D     +   +  L+TL  L+  +  +              + D  Y R +
Sbjct: 510 ---------DSTAWNASGSI--LNTLQQLKFYKPYI-------------CDNDPKYERLV 545

Query: 383 KKLPDLSQARNLENLLLKACSSLV-------------ETHSSIQ 413
             + D       ENL+    + L+             E H  +Q
Sbjct: 546 NAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549	Back alignment and structure

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		720
2a5y_B		549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.94
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.93
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	99.93
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.93
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.91
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1z6t_A		591	APAF-1, apoptotic protease activating factor 1; ca	99.9
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.89
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.89
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.88
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.88
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.87
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.87
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.87
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.86
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.85
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.85
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.84
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.84
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.84
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.83
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.83
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.83
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.81
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.8
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.77
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.77
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.76
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.74
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	99.74
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.73
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.73
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.73
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	99.72
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	99.7
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.69
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.68
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	99.67
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.67
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	99.66
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.65
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.65
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	99.64
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	99.62
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3e6j_A		229	Variable lymphocyte receptor diversity region; var	99.61
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	99.6
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3e6j_A		229	Variable lymphocyte receptor diversity region; var	99.6
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	99.58
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.55
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.51
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	99.5
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	99.49
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.44
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	99.43
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	99.4
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	99.38
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.36
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	99.36
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	99.24
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.2
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	99.15
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	99.11
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	99.1
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	98.88
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	98.8
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	98.79
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	98.73
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
1w5s_A		412	Origin recognition complex subunit 2 ORC2; replica	98.24
2fna_A		357	Conserved hypothetical protein; structural genomic	98.22
2qen_A		350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.18
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.14
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	98.06
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.02
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.76
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.75
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	97.69
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.69
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	97.68
2qby_B		384	CDC6 homolog 3, cell division control protein 6 ho	97.68
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.65
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
1njg_A		250	DNA polymerase III subunit gamma; rossman-like fol	97.23
2v1u_A		387	Cell division control protein 6 homolog; DNA repli	97.17
2qby_A		386	CDC6 homolog 1, cell division control protein 6 ho	97.12
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.02
1fnn_A		389	CDC6P, cell division control protein 6; ORC1, AAA	96.0
2chg_A		226	Replication factor C small subunit; DNA-binding pr	95.92
1sxj_B		323	Activator 1 37 kDa subunit; clamp loader, processi	95.53
3rfe_A		130	Platelet glycoprotein IB beta chain; platelet surf	95.13
3rfe_A		130	Platelet glycoprotein IB beta chain; platelet surf	94.78
1hqc_A		324	RUVB; extended AAA-ATPase domain, complex with nuc	93.82
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.39
1iqp_A		327	RFCS; clamp loader, extended AAA-ATPase domain, co	93.32
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.9
1jr3_A		373	DNA polymerase III subunit gamma; processivity, pr	89.6
2chq_A		319	Replication factor C small subunit; DNA-binding pr	88.35
1d2n_A		272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.26
3bos_A		242	Putative DNA replication factor; P-loop containing	84.68
1a5t_A		334	Delta prime, HOLB; zinc finger, DNA replication; 2	81.4
1sxj_A		516	Activator 1 95 kDa subunit; clamp loader, processi	80.09

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*	Back alignment and structure

Probab=100.00  E-value=1.3e-33  Score=319.99  Aligned_cols=236  Identities=15%  Similarity=0.128  Sum_probs=189.8

Q ss_pred             hHHHHHHHHHHhCCCC-CCcccc-----ccchHHHHHhcCCC-eEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCC
Q 004993            3 AHLRQELLSTLLNDDG-NVKIIP-----NIGLNFESKRLTRK-KVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRD   75 (720)
Q Consensus         3 ~~lq~~ll~~l~~~~~-~~~~~~-----~~~~~~i~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~   75 (720)
                      ..++++|+.++..... ..+.+.     +.+...+++.|++| ||||||||||+.+++ .+..     .+|||||||||+
T Consensus       201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~  274 (549)
T 2a5y_B          201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRD  274 (549)
T ss_dssp             HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESB
T ss_pred             HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCC
Confidence            4688999999987643 111222     33488999999996 999999999999976 2221     289999999999


Q ss_pred             hhHHhhcC-CCcEEEcCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHH
Q 004993           76 KQVLINCW-ADKIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAIT  154 (720)
Q Consensus        76 ~~v~~~~~-~~~~~~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~  154 (720)
                      +.|+..++ +..+|+|++|+.+|||+||.++||.... .+++++++++|+++|+|+||||+++|+.|+.++. +|...+.
T Consensus       275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~  352 (549)
T 2a5y_B          275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLN  352 (549)
T ss_dssp             GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHH
T ss_pred             HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhH
Confidence            99999876 4578999999999999999999997643 4678899999999999999999999999988742 3333333


Q ss_pred             H-HhcCCCchHHHHHHHhhcCCChhhhhhhc-----------ccccccCCCCHHHHHHHHHhC--CCCccc---------
Q 004993          155 K-LETVPHMEIQDVLKISYDGLDYVEQAMFL-----------DIACYFVGANKDFVINYFDAS--DFFPEI---------  211 (720)
Q Consensus       155 ~-L~~~~~~~i~~~l~~syd~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~w~~~--g~~~~~---------  211 (720)
                      . ++..+...+..++++||++||.++|.||+           |||+||++++.+  +++|+++  ||+...         
T Consensus       353 ~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~  430 (549)
T 2a5y_B          353 NKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEV  430 (549)
T ss_dssp             HHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHH
T ss_pred             HHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHH
Confidence            2 33324567888999999999999999999           999999998877  8999999  888533         


Q ss_pred             --chhhhhcccceEEe----CCeEEeeHHHHHHHHHHhhhhcc
Q 004993          212 --GLGRLVDKSLITIS----CNKIRMHDLLQDMGRKIDREAAI  248 (720)
Q Consensus       212 --~~~~L~~~~li~~~----~~~~~mHdLl~d~~~~i~~~~~~  248 (720)
                        ++++|++++|++..    ..+++|||++|++|++++.+++.
T Consensus       431 ~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          431 ADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence              49999999999986    24799999999999999887653

PyMOL of 2a5y

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*	Back alignment and structure

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20	Back alignment and structure

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*	Back alignment and structure

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}	Back alignment and structure

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20	Back alignment and structure

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}	Back alignment and structure

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*	Back alignment and structure

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*	Back alignment and structure

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*	Back alignment and structure

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A	Back alignment and structure

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*	Back alignment and structure

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A	Back alignment and structure

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*	Back alignment and structure

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		720
d2a5yb3		277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	8e-27
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ogqa_		313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1a9na_		162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1xwdc1		242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  108 bits (270), Expect = 8e-27
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 25  NIGLNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWA 84
            +     +  + R   L VFDDV   + I +              ++TTRD ++      
Sbjct: 122 VLKRMICNALIDRPNTLFVFDDVVQEETIRWA------QELRLRCLVTTRDVEISNAASQ 175

Query: 85  D-KIYEVKELADADALKLFSRCAFRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSA 143
             +  EV  L   +                     +  K I+ + G P  L +       
Sbjct: 176 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEED-VLNKTIELSSGNPATLMMFFKSCEP 234

Query: 144 RRKEEWESAITKLETVPHMEIQDVLKISYDGLDY 177
           +  E+      KLE+   + ++ +   SY  L  
Sbjct: 235 KTFEKMAQLNNKLESRGLVGVECITPYSYKSLAM 268

PyMOL of d2a5yb3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		720
d2a5yb3		277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.94
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.78
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.77
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.46
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.92
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.78
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.78
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.74
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.56
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	96.47
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	96.45
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.22
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.76
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.52
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	87.89
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	82.71

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.8e-27  Score=242.51  Aligned_cols=151  Identities=19%  Similarity=0.178  Sum_probs=136.2

Q ss_pred             hHHHHHhcCCCeEEEEEecCCChHHHHHHHccCCCCCCCcEEEEEeCChhHHhhcCCC-cEEEcCCCCHHHHHHHHHHhh
Q 004993           28 LNFESKRLTRKKVLIVFDDVTDRKQIEFLIGELDSFASGSLIIITTRDKQVLINCWAD-KIYEVKELADADALKLFSRCA  106 (720)
Q Consensus        28 ~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~-~~~~l~~L~~~es~~LF~~~a  106 (720)
                      ...+++.|.+||+|+||||||+.++|+.+.      ..|||||||||+++|+..+..+ ++|+|++|+.+|||+||+++|
T Consensus       125 ~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  198 (277)
T d2a5yb3         125 RMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG  198 (277)
T ss_dssp             HHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred             HHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHh
Confidence            446788899999999999999999999875      3589999999999999987665 689999999999999999999


Q ss_pred             cCCCCCChhHHHHHHHHHHHhcCCCchHHHHhhhhcCCCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhhhhhcc
Q 004993          107 FRQDHPVACYMELTYKIIKYAQGVPLALKVLGLFLSARRKEEWESAITKLETVPHMEIQDVLKISYDGLDYVEQAMFLD  185 (720)
Q Consensus       107 f~~~~~~~~~~~l~~~i~~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~~i~~~l~~syd~L~~~~k~~fl~  185 (720)
                      |....+ +..++++++|+++|+|+||||+++|+.|+.++.++|.+..++|+.....++..+++.||++||.++|.||-+
T Consensus       199 ~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         199 MPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV  276 (277)
T ss_dssp             CCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred             CCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            976543 456889999999999999999999999999999999999999988778889999999999999999999965

PyMOL of d2a5yb3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure