Citrus Sinensis ID: 005005

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720

MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTSDGDSESESSLIDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

ccccccccccccccEEEcccccccccccEEEccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHcccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHcccccccEEEEEEEccEEEEEEEEEEEEccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHcccccccccccEEEEcccccccccccHHHHHHcccccccccccccccccccccccccccc

ccccccHHEcccccEEEEEEccccccEEEEEEEEcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccHHHHHHHHcccccHHcccccccHHHHHHHHccHHHHHHHHHHHHccccccccHcccccccccccccccEEEEEEEEcccHHcccccHHHHHccHHHHHHcccEEEEEEcccccccHHHHHHHHHccEEEEEEEccccEEEEEEEEEEccEEEEEEcccccHHHcccccEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEEEEEcHHcccccHHHHHHccccHHHcccccHcccccccccEEEEEc

maskistsfispfvihfncknsnnknkhlnvpllfssrrllpaSCKMRQrsfgsqqkrqhvkkgspdqqrpndadlvptsdgdsesesslidrepidvehteeqnlgsvfvpelkeslvlncdggeelstsQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELThrgvsehseldvfanqnepanedlvlnnsEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESkkravhepvddmpWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTsssissglHVIHIAAEMapvakvggLGDVVAGLGKALqkkghlveivlpkydcmqydriddLRALDVVVESyfdgrlfknKVWVStieglpvyfiephhpdkffwrgqfygehddfrrFSFFSRAALELLLQagkqpdiihchdwqtafvaplywdlyvpkglnsarvcftchnfeyqgtapakelascgldvqqlnrpdrmqdnsahdrinplkv

maskistsfispfVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQrsfgsqqkrqhvkkgspdqqrpndadlvptsdgdsesesslidrepidveHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAelnsvkdaderVVMLEMERSSLESSLKELESklsisqedvaKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKeeskkravhepvddmpWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYfdgrlfknkVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLnrpdrmqdnsahdrinplkv

MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTSDGDSESESSLIDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVmlemersslesslkelesklsISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPvakvgglgdvvaglgkalQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDfrrfsffsrAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

*******SFISPFVIHFNCKNSNNKNKHLNVPLLFSSR********************************************************************GSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQ*********************************************************************************************************KLSTLKVECKDLYEKVENLQGLLAKA*******************************************************************SYVQLYQ*************************VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGL*************************

*****ST*FISPFVIHFNCKNSNNKNKHLNVPLLFSSRRL********************************************************************************************LDNLISMIRNAEKNILLLNEARVQALEDLHKILQE*EA**GEINALE*******************************************************************************************************VVML*****************************TLKVECKDLYEKVENL**************************************************************************************************************PWEFWSRLLLIIDGWL****************VWK*NGR********************************HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASC*********************************************IDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEME***************SISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

****ISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCK***********************************************************LGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR*******************EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR********MPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTSDGDSESESSLIDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTHRGVSEHSELDVFANQNEPANEDLVLNNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADQxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		720	2.2.26 [Sep-21-2011]
Q0WVX5		1040	Probable starch synthase	yes	no	0.963	0.667	0.609	0.0
Q6MAS9		500	Glycogen synthase OS=Prot	yes	no	0.288	0.416	0.519	1e-56
Q604D9		487	Glycogen synthase 2 OS=Me	yes	no	0.283	0.418	0.502	2e-52
P72623		491	Probable glycogen synthas	N/A	no	0.283	0.415	0.450	2e-47
Q3M9U1		492	Glycogen synthase 1 OS=An	yes	no	0.284	0.416	0.435	6e-47
Q8Z0Q9		492	Probable glycogen synthas	yes	no	0.284	0.416	0.430	1e-46
Q2JNM6		491	Glycogen synthase 1 OS=Sy	yes	no	0.286	0.419	0.464	4e-46
Q2JSZ9		491	Glycogen synthase 1 OS=Sy	yes	no	0.286	0.419	0.459	2e-45
Q3JEW3		487	Glycogen synthase 1 OS=Ni	yes	no	0.286	0.422	0.427	2e-44
Q43846		1230	Soluble starch synthase 3	N/A	no	0.273	0.160	0.441	1e-43

>sp\|Q0WVX5\|SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1	Back alignment and function desciption

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/774 (60%), Positives = 578/774 (74%), Gaps = 80/774 (10%)

Query: 1   MASKIST-SFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQ 59
           M +K+S+  F++  +   +C+  +  ++         SRRL+  SCKMRQ+      KRQ
Sbjct: 1   MTTKLSSFCFLTHGLAGISCEREHGSSRRF---FYLPSRRLVSTSCKMRQQRGFDSSKRQ 57

Query: 60  HVKKGSPDQ--------QRPND---------ADLVPTSDGDSESESSL---ID------- 92
            VKKGSP          Q  ND         AD VP+   D+E  SS+   ID       
Sbjct: 58  EVKKGSPKPILSINSGLQSNNDEESDLENGSADSVPSLKSDAEKGSSIHGSIDMNHADEN 117

Query: 93  ---------------------------REPIDVEHTEEQNLGSVFVPELKESLVLNCDGG 125
                                         ID+ H + +NL ++ VPE+ ++L LN   G
Sbjct: 118 LEKKDDIQTTEVTRRKSKTAKKKGESIHATIDIGHDDGKNLDNITVPEVAKALSLNKSEG 177

Query: 126 EELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185
           E++S  Q   L++MIR+AEKNIL L+EAR  AL+DL+KIL +KEALQGEIN LEM+L+ET
Sbjct: 178 EQISDGQFGELMTMIRSAEKNILRLDEARATALDDLNKILSDKEALQGEINVLEMKLSET 237

Query: 186 DARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245
           D RI+ AAQEK HVELLE+QL+KL+HE+                   P   D       +
Sbjct: 238 DERIKTAAQEKAHVELLEEQLEKLRHEMI-----------------SPIESD-----GYV 275

Query: 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305
            + SKEL++LK ENLSL+NDI++LK+EL+SVKD  ERVV+LE E S LESS+K+LESKLS
Sbjct: 276 LALSKELETLKLENLSLRNDIEMLKSELDSVKDTGERVVVLEKECSGLESSVKDLESKLS 335

Query: 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365
           +SQEDV++LSTLK+EC DL+ KVE LQ LL +ATKQA+QA+ VLQQNQ+LR KVDK+EES
Sbjct: 336 VSQEDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEES 395

Query: 366 LDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSL 425
           L EAN+YK SSEK+QQYNELMQ K+ LLEERL++SD EI SYVQLYQES+KEFQ+TL SL
Sbjct: 396 LKEANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQETLESL 455

Query: 426 KEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAY 485
           KEESKK++  EPVDDMPW++WSRLLL +DGWLLEKK+++++A LLR+MVWK++ RI D Y
Sbjct: 456 KEESKKKSRDEPVDDMPWDYWSRLLLTVDGWLLEKKIASNDADLLRDMVWKKDRRIHDTY 515

Query: 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG 545
           ++ K+KNE +AIS FLKL SS  SSGL+V+HIAAEMAPVAKVGGLGDVVAGLGKALQ+KG
Sbjct: 516 IDVKDKNERDAISAFLKLVSSPTSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKG 575

Query: 546 HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605
           HLVEI+LPKYDCMQYDR+ DLRALD VVESYFDG+L+KNK+W+ T+EGLPV+FIEP HP 
Sbjct: 576 HLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPS 635

Query: 606 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPK 665
           KFFWRGQFYGE DDFRRFS+FSRAALELLLQ+GK+PDIIHCHDWQTAFVAPLYWDLY PK
Sbjct: 636 KFFWRGQFYGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPK 695

Query: 666 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719
           GL+SAR+CFTCHNFEYQGTA A EL SCGLDV QLNRPDRMQD+S+ DR+NP+K
Sbjct: 696 GLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGDRVNPVK 749

Probably involved in the priming of starch granule formation. May play a regulatory role in the control of starch accumulation in plastids. Is necessary and sufficient to establish the correct number of starch granules observed in chloroplasts.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1

>sp\|Q6MAS9\|GLGA_PARUW Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1	Back alignment and function description

>sp\|Q604D9\|GLGA2_METCA Glycogen synthase 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=glgA2 PE=3 SV=2	Back alignment and function description

>sp\|P72623\|GLGA2_SYNY3 Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=glgA2 PE=1 SV=1	Back alignment and function description

>sp\|Q3M9U1\|GLGA1_ANAVT Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1	Back alignment and function description

>sp\|Q8Z0Q9\|GLGA2_NOSS1 Probable glycogen synthase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=glgA2 PE=3 SV=1	Back alignment and function description

>sp\|Q2JNM6\|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=glgA1 PE=3 SV=1	Back alignment and function description

>sp\|Q2JSZ9\|GLGA1_SYNJA Glycogen synthase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1	Back alignment and function description

>sp\|Q3JEW3\|GLGA1_NITOC Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1 PE=3 SV=1	Back alignment and function description

>sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		720
225463426		1011	PREDICTED: uncharacterized protein LOC10	0.976	0.695	0.690	0.0
356512165		989	PREDICTED: uncharacterized protein LOC10	0.963	0.701	0.661	0.0
224055495		887	predicted protein [Populus trichocarpa]	0.829	0.673	0.747	0.0
255557389		998	starch synthase, putative [Ricinus commu	0.926	0.668	0.636	0.0
42566924		1040	starch synthase 4 [Arabidopsis thaliana]	0.963	0.667	0.609	0.0
350538831		1001	starch synthase IV [Solanum lycopersicum	0.931	0.670	0.671	0.0
2832698		1071	starch synthase-like protein [Arabidopsi	0.963	0.647	0.598	0.0
356524929		873	PREDICTED: glycogen synthase-like [Glyci	0.805	0.664	0.736	0.0
4582783		874	starch synthase, isoform V [Vigna unguic	0.806	0.664	0.724	0.0
357132826		921	PREDICTED: glycogen synthase-like [Brach	0.761	0.595	0.529	0.0

>gi\|225463426\|ref\|XP_002274716.1\| PREDICTED: uncharacterized protein LOC100257130 [Vitis vinifera] gi\|297740652\|emb\|CBI30834.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/737 (69%), Positives = 596/737 (80%), Gaps = 34/737 (4%)

Query: 1   MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQH 60
           MA+K+ST F+S      +CK SN +        L  S RLLPASCKMR R+F SQ KRQ 
Sbjct: 1   MAAKLSTCFLSHGWGSLDCKRSNGR-------FLAPSHRLLPASCKMRHRNFSSQHKRQQ 53

Query: 61  VKKGSPDQQRPNDADLVPTSDGDSESESSLID--------REP----------IDVEHTE 102
            KK SPD+ RP ++      D D+E E++L D          P          I +EH  
Sbjct: 54  TKKVSPDR-RPTNSHFQSNGDEDTEPENALADGVSSLNQGTTPDDEDADVDSHIAIEHIN 112

Query: 103 EQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLH 162
           +  L  + V E    L +N   GE+LS+ QL++L+ M++NAEKNILLLN+ARV+AL+DL 
Sbjct: 113 DNPLKHLTVSEEMTPLGINVKSGEQLSSFQLEDLVGMLKNAEKNILLLNQARVRALQDLE 172

Query: 163 KILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHS 222
           KIL EK+ALQGEIN LEMRLAET+ARI+VAAQEKIHVE+LE+QL  L++EL+HRGV+E S
Sbjct: 173 KILTEKDALQGEINILEMRLAETNARIKVAAQEKIHVEILEEQLVNLRNELSHRGVTEGS 232

Query: 223 ELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER 282
             D+  N N+  +         +HS  KEL  L+TEN+SLK+DI  LK EL+ V+  D+R
Sbjct: 233 GADMHENWNKAFDG--------VHSLGKELSLLRTENVSLKDDILALKEELSHVQKTDKR 284

Query: 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA 342
           VVMLE ERS LES+LKELE KL  SQEDV+KLSTLK ECK+L+++VENLQ LL +AT QA
Sbjct: 285 VVMLEKERSFLESALKELEFKLVASQEDVSKLSTLKFECKNLWDRVENLQVLLDRATDQA 344

Query: 343 DQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402
           D+AI VL+QNQELRKKVD LEESL+EAN+YKLSSEKMQQYN+LMQ+K+KLLEERL RSDE
Sbjct: 345 DKAILVLEQNQELRKKVDMLEESLEEANVYKLSSEKMQQYNDLMQKKIKLLEERLDRSDE 404

Query: 403 EIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKL 462
           EI SYV+LYQES+KEFQDTL++LKEESK+RA++EPVDDMPW+FWSRLLLIIDGWLLEKK+
Sbjct: 405 EILSYVKLYQESIKEFQDTLNNLKEESKRRALNEPVDDMPWDFWSRLLLIIDGWLLEKKI 464

Query: 463 STSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA 522
           S ++AKLLREMVWKR+GRIRDAY+ CK+ NEHEA++ FLKLTSS   S LHVIHIAAEMA
Sbjct: 465 SANDAKLLREMVWKRDGRIRDAYLVCKDTNEHEAVAIFLKLTSSPKRSRLHVIHIAAEMA 524

Query: 523 PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582
           PVAKVGGLGDVV+GL +ALQKKGHLVEIVLPKYDCMQYDRI DLR LD+ +ESYFDGRLF
Sbjct: 525 PVAKVGGLGDVVSGLSRALQKKGHLVEIVLPKYDCMQYDRIRDLRVLDMELESYFDGRLF 584

Query: 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPD 642
           +NKVWV T+EGLPVYFIEPHHP KFFWRG  YGEHDDFRRFS+FSRAALELLLQAGK+PD
Sbjct: 585 RNKVWVGTVEGLPVYFIEPHHPSKFFWRGTVYGEHDDFRRFSYFSRAALELLLQAGKKPD 644

Query: 643 IIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNR 702
           IIHCHDWQTAFVAPLYWDLY PKGLNSAR+CFTCHNFEYQGTAPA E+ASCGLDV  LNR
Sbjct: 645 IIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASEMASCGLDVHHLNR 704

Query: 703 PDRMQDNSAHDRINPLK 719
           PDRMQDNSAHDR+NP+K
Sbjct: 705 PDRMQDNSAHDRVNPVK 721

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356512165\|ref\|XP_003524791.1\| PREDICTED: uncharacterized protein LOC100788308 [Glycine max]	Back alignment and taxonomy information

>gi\|224055495\|ref\|XP_002298514.1\| predicted protein [Populus trichocarpa] gi\|222845772\|gb\|EEE83319.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255557389\|ref\|XP_002519725.1\| starch synthase, putative [Ricinus communis] gi\|223541142\|gb\|EEF42698.1\| starch synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|42566924\|ref\|NP_193558.3\| starch synthase 4 [Arabidopsis thaliana] gi\|122230204\|sp\|Q0WVX5.1\|SSY4_ARATH RecName: Full=Probable starch synthase 4, chloroplastic/amyloplastic; Short=AtSS4; AltName: Full=Soluble starch synthase IV; Flags: Precursor gi\|110741548\|dbj\|BAE98723.1\| starch synthase-like protein [Arabidopsis thaliana] gi\|332658615\|gb\|AEE84015.1\| starch synthase 4 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|350538831\|ref\|NP_001234617.1\| starch synthase IV [Solanum lycopersicum] gi\|247643234\|gb\|ACT09058.1\| starch synthase IV precursor [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|2832698\|emb\|CAA16796.1\| starch synthase-like protein [Arabidopsis thaliana] gi\|7268617\|emb\|CAB78826.1\| starch synthase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356524929\|ref\|XP_003531080.1\| PREDICTED: glycogen synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|4582783\|emb\|CAB40375.1\| starch synthase, isoform V [Vigna unguiculata]	Back alignment and taxonomy information

>gi\|357132826\|ref\|XP_003568029.1\| PREDICTED: glycogen synthase-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		720
TAIR\|locus:2141936		1040	SS4 "starch synthase 4" [Arabi	0.890	0.616	0.539	2.7e-191
TAIR\|locus:505006717		460	AT5G65685 [Arabidopsis thalian	0.493	0.771	0.312	9.2e-52
TIGR_CMR\|GSU_3257		484	GSU_3257 "glycogen synthase" [	0.248	0.369	0.282	2.6e-12
SGD\|S000002216		1790	USO1 "Protein involved in the	0.602	0.242	0.202	2e-09
UNIPROTKB\|E1C1F2		1980	TRIP11 "Uncharacterized protei	0.431	0.157	0.243	2.9e-09
DICTYBASE\|DDB_G0274893		915	DDB_G0274893 "unknown" [Dictyo	0.555	0.437	0.207	2.2e-08
MGI\|MGI:1925177		1873	Ccdc88a "coiled coil domain co	0.412	0.158	0.210	3.3e-08
UNIPROTKB\|O15320		804	CTAGE5 "Cutaneous T-cell lymph	0.470	0.421	0.230	1.1e-07
DICTYBASE\|DDB_G0292068		1096	frpA "fimbrin-related protein"	0.470	0.309	0.209	1.6e-07
ZFIN\|ZDB-GENE-030131-731		904	hmmr "hyaluronan-mediated moti	0.406	0.324	0.216	1.6e-07

TAIR\|locus:2141936 SS4 "starch synthase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1758 (623.9 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
 Identities = 359/666 (53%), Positives = 460/666 (69%)

Query:    74 ADLVPTSDGDSESESSL---IDR----EPI----DVEHTEEQNLGSVFVPELKESLVLNC 122
             AD VP+   D+E  SS+   ID     E +    D++ TE     S    +  ES+    
Sbjct:    89 ADSVPSLKSDAEKGSSIHGSIDMNHADENLEKKDDIQTTEVTRRKSKTAKKKGESIHATI 148

Query:   123 DGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALED--LHKILQEKEALQGEINAL-E 179
             D G +     LDN+   +    K  L LN++  + + D    +++    + +  I  L E
Sbjct:   149 DIGHD-DGKNLDNIT--VPEVAK-ALSLNKSEGEQISDGQFGELMTMIRSAEKNILRLDE 204

Query:   180 MRLAETDARIRVAAQEKI---HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236
              R    D   ++ + ++     + +LE +L +    +      E + +++   Q E    
Sbjct:   205 ARATALDDLNKILSDKEALQGEINVLEMKLSETDERIK-TAAQEKAHVELLEEQLEKLRH 263

Query:   237 DLVL---NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVXXXXXXXXX 293
             +++    ++  + + SKEL++LK ENLSL+NDI++LK+EL+SVKD  ERVV         
Sbjct:   264 EMISPIESDGYVLALSKELETLKLENLSLRNDIEMLKSELDSVKDTGERVVVLEKECSGL 323

Query:   294 XXXXXXXXXXXXISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 353
                         +SQEDV++LSTLK+EC DL+ KVE LQ LL +ATKQA+QA+ VLQQNQ
Sbjct:   324 ESSVKDLESKLSVSQEDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQ 383

Query:   354 ELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE 413
             +LR KVDK+EESL EAN+YK SSEK+QQYNELMQ K+ LLEERL++SD EI SYVQLYQE
Sbjct:   384 DLRNKVDKIEESLKEANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQE 443

Query:   414 SVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREM 473
             S+KEFQ+TL SLKEESKK++  EPVDDMPW++WSRLLL +DGWLLEKK+++++A LLR+M
Sbjct:   444 SIKEFQETLESLKEESKKKSRDEPVDDMPWDYWSRLLLTVDGWLLEKKIASNDADLLRDM 503

Query:   474 VWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPXXXXXXXXXX 533
             VWK++ RI D Y++ K+KNE +AIS FLKL SS  SSGL+V+HIAAEMAP          
Sbjct:   504 VWKKDRRIHDTYIDVKDKNERDAISAFLKLVSSPTSSGLYVVHIAAEMAPVAKVGGLGDV 563

Query:   534 XXXXXXXXQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593
                     Q+KGHLVEI+LPKYDCMQYDR+ DLRALD VVESYFDG+L+KNK+W+ T+EG
Sbjct:   564 VAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEG 623

Query:   594 LPVYFIEPHHPDKFFWRGQFYGEHDDXXXXXXXXXAALELLLQAGKQPDIIHCHDWQTAF 653
             LPV+FIEP HP KFFWRGQFYGE DD         AALELLLQ+GK+PDIIHCHDWQTAF
Sbjct:   624 LPVHFIEPQHPSKFFWRGQFYGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAF 683

Query:   654 VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD 713
             VAPLYWDLY PKGL+SAR+CFTCHNFEYQGTA A EL SCGLDV QLNRPDRMQD+S+ D
Sbjct:   684 VAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGD 743

Query:   714 RINPLK 719
             R+NP+K
Sbjct:   744 RVNPVK 749

GO:0009011 "starch synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009250 "glucan biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005982 "starch metabolic process" evidence=RCA;IMP

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR\|locus:505006717 AT5G65685 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

SGD\|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1F2 TRIP11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274893 DDB_G0274893 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1925177 Ccdc88a "coiled coil domain containing 88A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O15320 CTAGE5 "Cutaneous T-cell lymphoma-associated antigen 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292068 frpA "fimbrin-related protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-731 hmmr "hyaluronan-mediated motility receptor (RHAMM)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WVX5	SSY4_ARATH	2, ., 4, ., 1, ., 2, 1	0.6098	0.9638	0.6673	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.2314.1	hypothetical protein (887 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_V001651	SubName- Full=Starch branching enzyme I; (701 aa)	•			•	•	0.563
	eugene3.00280310	SubName- Full=Starch branching enzyme II; (730 aa)	•				•	0.557
	estExt_fgenesh4_pg.C_LG_IX1158	hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)	•	•	•		•	0.540
	fgenesh4_pm.C_LG_XIV000240	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (445 aa)	•	•			•	0.538
	gw1.V.1420.1	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (475 aa)		•			•	0.533
	estExt_Genewise1_v1.C_LG_IV2986	hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa)	•	•	•		•	0.525
	eugene3.00141188	RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (523 aa)		•			•	0.518
	estExt_fgenesh4_pm.C_LG_II0158	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)		•			•	0.516
	estExt_Genewise1_v1.C_LG_IX1717	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (527 aa)		•			•	0.512
	estExt_Genewise1_v1.C_LG_VIII1252	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)		•			•	0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		720
PLN02939		977	PLN02939, PLN02939, transferase, transferring glyc	0.0
TIGR02095		473	TIGR02095, glgA, glycogen/starch synthase, ADP-glu	4e-67
cd03791		476	cd03791, GT1_Glycogen_synthase_DULL1_like, This fa	1e-66
pfam08323		234	pfam08323, Glyco_transf_5, Starch synthase catalyt	9e-63
PRK00654		466	PRK00654, glgA, glycogen synthase; Provisional	8e-59
PLN02316		1036	PLN02316, PLN02316, synthase/transferase	2e-55
COG0297		487	COG0297, GlgA, Glycogen synthase [Carbohydrate tra	5e-35
PRK14098		489	PRK14098, PRK14098, glycogen synthase; Provisional	2e-13
PRK14099		485	PRK14099, PRK14099, glycogen synthase; Provisional	2e-12
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-11
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-08
pfam13579		158	pfam13579, Glyco_trans_4_4, Glycosyl transferase 4	8e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
pfam12718		143	pfam12718, Tropomyosin_1, Tropomyosin like	5e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-06
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-06
cd03801		374	cd03801, GT1_YqgM_like, This family is most closel	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG5185		622	COG5185, HEC1, Protein involved in chromosome segr	2e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG5185		622	COG5185, HEC1, Protein involved in chromosome segr	3e-05
COG1579		239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	6e-05
TIGR03346		852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	6e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	8e-05
pfam12718		143	pfam12718, Tropomyosin_1, Tropomyosin like	2e-04
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-04
COG1579		239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	7e-04
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	7e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.001
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
TIGR00606		1311	TIGR00606, rad50, rad50	0.002
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	0.002
pfam07888		546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.002
pfam07111		739	pfam07111, HCR, Alpha helical coiled-coil rod prot	0.002
COG3096		1480	COG3096, MukB, Uncharacterized protein involved in	0.003
pfam10186		307	pfam10186, Atg14, UV radiation resistance protein	0.003
TIGR04320		356	TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exc	0.003
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl\|CDD\|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups	Back alignment and domain information

 Score = 1016 bits (2628), Expect = 0.0
 Identities = 443/698 (63%), Positives = 531/698 (76%), Gaps = 37/698 (5%)

Query: 30  NVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTSDGDSESESS 89
             P    SRR L  SC+ R+R F SQQK++   K    +QR +++ L   +D + + E++
Sbjct: 20  RAPFYLPSRRRLAVSCRARRRGFSSQQKKK-RGKNIAPKQRSSNSKLQSNTDENGQLENT 78

Query: 90  LID--------REPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIR 141
            +             D +H          +  +      N   GE+LS  QL++L+ MI+
Sbjct: 79  SLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQ 138

Query: 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVEL 201
           NAEKNILLLN+AR+QALEDL KIL EKEALQG+IN LEMRL+ETDARI++AAQEKIHVE+
Sbjct: 139 NAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI 198

Query: 202 LEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLS 261
           LE+QL+KL++EL  RG +E                        +HS SKELD LK EN+ 
Sbjct: 199 LEEQLEKLRNELLIRGATE---------------------GLCVHSLSKELDVLKEENML 237

Query: 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVEC 321
           LK+DI+ LKAEL  V + +ERV  LE ERS L++SL+ELESK  ++QEDV+KLS L+ +C
Sbjct: 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC 297

Query: 322 KDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQ 381
              +EKVENLQ LL +AT Q ++A  VL QNQ+LR KVDKLE SL EAN+ K SS K+  
Sbjct: 298 --WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV-- 353

Query: 382 YNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDM 441
             EL+QQK+KLLEERLQ SD EIHSY+QLYQES+KEFQDTL  LKEESKKR++  P DDM
Sbjct: 354 --ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDM 411

Query: 442 PWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFL 501
           P EFWSR+LL+IDGWLLEKK+S ++AKLLREMVWKR+GRIR+AY+ CK KNE EA+  FL
Sbjct: 412 PSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVENFL 471

Query: 502 KLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYD 561
           KLT S  SSGLH++HIAAEMAPVAKVGGL DVV+GLGKALQKKGHLVEIVLPKYDCMQYD
Sbjct: 472 KLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYD 531

Query: 562 RIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFR 621
           +I +L+ LDVVVESYFDG LFKNK+W  T+EGLPVYFIEP HP KFFWR Q+YGEHDDF+
Sbjct: 532 QIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFK 591

Query: 622 RFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEY 681
           RFS+FSRAALELL Q+GK+PDIIHCHDWQTAFVAPLYWDLY PKG NSAR+CFTCHNFEY
Sbjct: 592 RFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEY 651

Query: 682 QGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719
           QGTAPA +LASCGLDV QL+RPDRMQDN+ H RIN +K
Sbjct: 652 QGTAPASDLASCGLDVHQLDRPDRMQDNA-HGRINVVK 688

Length = 977

>gnl\|CDD\|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type	Back alignment and domain information

>gnl\|CDD\|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain	Back alignment and domain information

>gnl\|CDD\|234809 PRK00654, glgA, glycogen synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|215180 PLN02316, PLN02316, synthase/transferase	Back alignment and domain information

>gnl\|CDD\|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|172588 PRK14098, PRK14098, glycogen synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237610 PRK14099, PRK14099, glycogen synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|205039 pfam12718, Tropomyosin_1, Tropomyosin like	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|205039 pfam12718, Tropomyosin_1, Tropomyosin like	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|129694 TIGR00606, rad50, rad50	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like	Back alignment and domain information

>gnl\|CDD\|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR)	Back alignment and domain information

>gnl\|CDD\|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14	Back alignment and domain information

>gnl\|CDD\|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		720
PLN02939		977	transferase, transferring glycosyl groups	100.0
PF08323		245	Glyco_transf_5: Starch synthase catalytic domain;	100.0
PRK14099		485	glycogen synthase; Provisional	100.0
PRK14098		489	glycogen synthase; Provisional	100.0
TIGR02095		473	glgA glycogen/starch synthases, ADP-glucose type.	100.0
PLN02316		1036	synthase/transferase	100.0
PRK00654		466	glgA glycogen synthase; Provisional	100.0
COG0297		487	GlgA Glycogen synthase [Carbohydrate transport and	100.0
cd03791		476	GT1_Glycogen_synthase_DULL1_like This family is mo	100.0
TIGR02094		601	more_P_ylases alpha-glucan phosphorylases. This fa	99.92
cd04299		778	GT1_Glycogen_Phosphorylase_like This family is mos	99.9
TIGR02472		439	sucr_P_syn_N sucrose-phosphate synthase, putative,	99.05
TIGR03449		405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	98.93
PF13579		160	Glyco_trans_4_4: Glycosyl transferase 4-like domai	98.92
TIGR02468		1050	sucrsPsyn_pln sucrose phosphate synthase/possible	98.86
PRK10307		412	putative glycosyl transferase; Provisional	98.79
TIGR02470		784	sucr_synth sucrose synthase. This model represents	98.7
cd03800		398	GT1_Sucrose_synthase This family is most closely r	98.69
cd03796		398	GT1_PIG-A_like This family is most closely related	98.66
cd03802		335	GT1_AviGT4_like This family is most closely relate	98.6
TIGR02149		388	glgA_Coryne glycogen synthase, Corynebacterium fam	98.49
PLN02871		465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	98.49
cd04962		371	GT1_like_5 This family is most closely related to	98.47
cd03794		394	GT1_wbuB_like This family is most closely related	98.44
cd03793		590	GT1_Glycogen_synthase_GSY2_like Glycogen synthase,	98.41
cd03805		392	GT1_ALG2_like This family is most closely related	98.39
PLN00142		815	sucrose synthase	98.34
PF13439		177	Glyco_transf_4: Glycosyltransferase Family 4; PDB:	98.31
PRK10125		405	putative glycosyl transferase; Provisional	98.26
cd04951		360	GT1_WbdM_like This family is most closely related	98.24
PF13477		139	Glyco_trans_4_2: Glycosyl transferase 4-like	98.21
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	98.17
cd04955		363	GT1_like_6 This family is most closely related to	98.15
cd03823		359	GT1_ExpE7_like This family is most closely related	98.09
cd03801		374	GT1_YqgM_like This family is most closely related	98.07
cd03825		365	GT1_wcfI_like This family is most closely related	98.03
cd03807		365	GT1_WbnK_like This family is most closely related	98.03
cd03817		374	GT1_UGDG_like This family is most closely related	97.96
cd03819		355	GT1_WavL_like This family is most closely related	97.93
cd03821		375	GT1_Bme6_like This family is most closely related	97.92
cd01635		229	Glycosyltransferase_GTB_type Glycosyltransferases	97.86
TIGR01133		348	murG undecaprenyldiphospho-muramoylpentapeptide be	97.82
cd03792		372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	97.82
PLN02846		462	digalactosyldiacylglycerol synthase	97.81
cd03808		359	GT1_cap1E_like This family is most closely related	97.75
cd03818		396	GT1_ExpC_like This family is most closely related	97.74
cd03822		366	GT1_ecORF704_like This family is most closely rela	97.69
COG0058		750	GlgP Glucan phosphorylase [Carbohydrate transport	97.66
cd03809		365	GT1_mtfB_like This family is most closely related	97.64
cd03785		350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	97.6
cd03795		357	GT1_like_4 This family is most closely related to	97.6
cd03812		358	GT1_CapH_like This family is most closely related	97.57
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.57
cd03814		364	GT1_like_2 This family is most closely related to	97.55
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.47
PRK02224		880	chromosome segregation protein; Provisional	97.47
cd03820		348	GT1_amsD_like This family is most closely related	97.47
PRK02224		880	chromosome segregation protein; Provisional	97.47
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.44
cd03798		377	GT1_wlbH_like This family is most closely related	97.43
PHA02562		562	46 endonuclease subunit; Provisional	97.42
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.41
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.4
PF05693		633	Glycogen_syn: Glycogen synthase; InterPro: IPR0086	97.34
cd03811		353	GT1_WabH_like This family is most closely related	97.32
PRK09922		359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	97.31
cd03799		355	GT1_amsK_like This is a family of GT1 glycosyltran	97.28
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.27
PRK15484		380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	97.24
PRK03918		880	chromosome segregation protein; Provisional	97.22
PF09314		185	DUF1972: Domain of unknown function (DUF1972); Int	97.22
cd03816		415	GT1_ALG1_like This family is most closely related	97.09
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.02
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.0
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.97
cd04300		797	GT1_Glycogen_Phosphorylase This is a family of oli	96.89
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.85
cd05844		367	GT1_like_7 Glycosyltransferases catalyze the trans	96.84
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.8
PRK03918		880	chromosome segregation protein; Provisional	96.76
PRK14985		798	maltodextrin phosphorylase; Provisional	96.75
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.73
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.73
PRK15427		406	colanic acid biosynthesis glycosyltransferase WcaL	96.58
PRK14986		815	glycogen phosphorylase; Provisional	96.57
TIGR02093		794	P_ylase glycogen/starch/alpha-glucan phosphorylase	96.51
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	96.46
PRK11637		428	AmiB activator; Provisional	96.46
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.45
PHA02562		562	46 endonuclease subunit; Provisional	96.39
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	96.36
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	96.32
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.26
KOG0971		1243	consensus Microtubule-associated protein dynactin	96.22
KOG0996		1293	consensus Structural maintenance of chromosome pro	96.15
PRK01156		895	chromosome segregation protein; Provisional	96.1
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.08
TIGR03088		374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	96.02
PRK04778		569	septation ring formation regulator EzrA; Provision	95.84
KOG1111		426	consensus N-acetylglucosaminyltransferase complex,	95.8
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	95.72
PLN02275		371	transferase, transferring glycosyl groups	95.71
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.63
PRK13609		380	diacylglycerol glucosyltransferase; Provisional	95.63
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.56
PRK01156		895	chromosome segregation protein; Provisional	95.52
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.51
KOG0996		1293	consensus Structural maintenance of chromosome pro	95.45
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	95.43
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.38
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.33
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	95.25
KOG4673		961	consensus Transcription factor TMF, TATA element m	95.03
PRK04778		569	septation ring formation regulator EzrA; Provision	95.02
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	94.98
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	94.9
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.8
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.74
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	94.73
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	94.67
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	94.67
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	94.67
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.55
PRK04863		1486	mukB cell division protein MukB; Provisional	94.53
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	94.36
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.34
PF15294		278	Leu_zip: Leucine zipper	94.33
PRK09039		343	hypothetical protein; Validated	94.32
PRK11637		428	AmiB activator; Provisional	94.28
KOG0964		1200	consensus Structural maintenance of chromosome pro	94.19
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.17
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	93.93
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.9
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	93.75
cd03784		401	GT1_Gtf_like This family includes the Gtfs, a grou	93.69
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	93.67
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.57
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	93.52
PRK04863		1486	mukB cell division protein MukB; Provisional	93.34
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	93.27
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	93.21
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	93.17
KOG0249		916	consensus LAR-interacting protein and related prot	93.12
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	92.87
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	92.75
PRK00025		380	lpxB lipid-A-disaccharide synthase; Reviewed	92.72
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	92.61
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	92.54
KOG0933		1174	consensus Structural maintenance of chromosome pro	92.51
KOG0018		1141	consensus Structural maintenance of chromosome pro	92.49
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	92.47
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	91.96
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	91.92
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	91.81
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	91.72
PF14662		193	CCDC155: Coiled-coil region of CCDC155	91.65
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.64
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	91.63
PF13514		1111	AAA_27: AAA domain	91.51
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.04
cd03806		419	GT1_ALG11_like This family is most closely related	91.04
PRK10929		1109	putative mechanosensitive channel protein; Provisi	91.02
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	90.92
PF04912		388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	90.89
PF00862		550	Sucrose_synth: Sucrose synthase; InterPro: IPR0003	90.82
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	90.7
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	90.69
PLN02939		977	transferase, transferring glycosyl groups	90.61
KOG0971		1243	consensus Microtubule-associated protein dynactin	90.33
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	90.25
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.0
COG5185		622	HEC1 Protein involved in chromosome segregation, i	89.92
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	89.84
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	89.78
KOG4360		596	consensus Uncharacterized coiled coil protein [Fun	89.76
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	89.65
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	89.45
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.36
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	89.35
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.32
PRK11281		1113	hypothetical protein; Provisional	89.29
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	89.19
KOG0963		629	consensus Transcription factor/CCAAT displacement	88.9
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	88.59
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.51
PRK09039		343	hypothetical protein; Validated	88.44
COG4942		420	Membrane-bound metallopeptidase [Cell division and	88.01
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	87.76
KOG0979		1072	consensus Structural maintenance of chromosome pro	87.72
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	87.63
PF10186		302	Atg14: UV radiation resistance protein and autopha	87.2
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	86.85
KOG4302		660	consensus Microtubule-associated protein essential	86.79
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	86.79
COG4717		984	Uncharacterized conserved protein [Function unknow	86.71
cd03788		460	GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a	86.5
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	86.45
cd07647		239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	86.36
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	86.34
PRK11281		1113	hypothetical protein; Provisional	86.03
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.85
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	85.68
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	85.64
PF08288		90	PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP	85.63
cd00176		213	SPEC Spectrin repeats, found in several proteins i	85.53
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.35
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	85.32
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	85.29
cd07627		216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	85.26
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	85.15
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	84.92
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	84.19
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	84.13
PRK12446		352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	84.04
TIGR00236		365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	83.92
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	83.56
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	83.39
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	83.08
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	83.01
KOG3156		220	consensus Uncharacterized membrane protein [Functi	82.94
COG4942		420	Membrane-bound metallopeptidase [Cell division and	82.88
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	82.8
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	82.49
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	81.8
cd03813		475	GT1_like_3 This family is most closely related to	81.4
PF05278		269	PEARLI-4: Arabidopsis phospholipase-like protein (	81.16
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	80.87
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	80.87
PRK10246		1047	exonuclease subunit SbcC; Provisional	80.26
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	80.06

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

Probab=100.00  E-value=4.8e-196  Score=1666.31  Aligned_cols=681  Identities=66%  Similarity=1.026  Sum_probs=634.7

Q ss_pred             CCcccccccccCcceeecccCCCCcCCccccccccccccccccccccccCCCchhHHhhhcccCCCCCCCCCCCCCccCC
Q 005005            1 MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTS   80 (720)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sq~krq~~k~~sp~~~~~~~~~l~~~~   80 (720)
                      ||.+-++||++|||+++.|          +.+||+|+||++|+||+||||+||||||||++|+++|+| ||+|++||+|+
T Consensus         1 ~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   69 (977)
T PLN02939          1 AAAAESAALLSHGCGPIRS----------RAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQ-RSSNSKLQSNT   69 (977)
T ss_pred             CchhhhhhHhhcccccccc----------CCCCCCchhccccccccccCCCchhhhhhhhccCCCCcc-cccccccccCc
Confidence            5778899999999999954          668999999999999999999999999999999999998 99999999999


Q ss_pred             CCCCcccccccCC--CCC-Ccccccccccc-cccccccccccc----cccCCCccccccchhHHHHHHHhhhhhHHHHHH
Q 005005           81 DGDSESESSLIDR--EPI-DVEHTEEQNLG-SVFVPELKESLV----LNCDGGEELSTSQLDNLISMIRNAEKNILLLNE  152 (720)
Q Consensus        81 d~~~~~e~~l~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  152 (720)
                      |||+|+||+++++  +.| +.|+.+.+.+. +.+.++.+.+..    -+..+|+|+|++|||||+|||||||||||||||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (977)
T PLN02939         70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ  149 (977)
T ss_pred             cccccccccccccccccccCCCCccccccchhhcchhhhccccHhhhhccccccccccccHHHHHHHHHHHHhhhHhHHH
Confidence            9999999999996  445 55555554444 345555444433    367789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCC
Q 005005          153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE  232 (720)
Q Consensus       153 ~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (720)
                      ||++||+||+|||+|||+|||+||||||||||||+|+|+++|+++||||+|+|||||||||+++|+++|+          
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  219 (977)
T PLN02939        150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL----------  219 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999754          


Q ss_pred             CcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 005005          233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA  312 (720)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~  312 (720)
                                 .+|+|++||++||+|||+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+
T Consensus       220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (977)
T PLN02939        220 -----------CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS  288 (977)
T ss_pred             -----------ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                       577999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 005005          313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL  392 (720)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (720)
                      ||+||++||  |||||||||+||++||||+|+|++||+||||||+|||+||+||+|||+||+||+++    ++||||||+
T Consensus       289 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  362 (977)
T PLN02939        289 KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKL  362 (977)
T ss_pred             hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHH
Confidence            999999998  99999999999999999999999999999999999999999999999999999977    999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHH
Q 005005          393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLRE  472 (720)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~  472 (720)
                      +|+|||+||+||+||+++|+++|++||++|++||+|+++++.++|+++|||+|||+||||||+|+|+++|+++|||.||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~  442 (977)
T PLN02939        363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLRE  442 (977)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005          473 MVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL  552 (720)
Q Consensus       473 ~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL  552 (720)
                      |||+|+.+|+++|+++++++|+|++++|+++.+++++++|||||||+||+||+|||||||||++||+||+++||+|+|||
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIl  522 (977)
T PLN02939        443 MVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVL  522 (977)
T ss_pred             HHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 005005          553 PKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE  632 (720)
Q Consensus       553 PkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALE  632 (720)
                      |+|+++.+..+..++.....+..+++|..+.++||.+.++||+||||++++|+.||+|+.+||++||++||+|||+|+++
T Consensus       523 P~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe  602 (977)
T PLN02939        523 PKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALE  602 (977)
T ss_pred             CCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            99999875444444333333444566666678999999999999999987665699999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCC
Q 005005          633 LLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH  712 (720)
Q Consensus       633 lL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~  712 (720)
                      ++.+.+|+||||||||||||+|||+|++.|...++.++|+||||||++|||.||+..+..+|||+++|.++++++|. +|
T Consensus       603 ~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~  681 (977)
T PLN02939        603 LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AH  681 (977)
T ss_pred             HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cC
Confidence            99999999999999999999998999877766667889999999999999999999998999999988779999875 89


Q ss_pred             CCCcccCC
Q 005005          713 DRINPLKV  720 (720)
Q Consensus       713 G~INfLK~  720 (720)
                      |++|+||+
T Consensus       682 ~~iN~LK~  689 (977)
T PLN02939        682 GRINVVKG  689 (977)
T ss_pred             CchHHHHH
Confidence            99999984

>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2	Back alignment and domain information

>PRK14099 glycogen synthase; Provisional	Back alignment and domain information

>PRK14098 glycogen synthase; Provisional	Back alignment and domain information

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PRK00654 glgA glycogen synthase; Provisional	Back alignment and domain information

>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02094 more_P_ylases alpha-glucan phosphorylases	Back alignment and domain information

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences	Back alignment and domain information

>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain	Back alignment and domain information

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	Back alignment and domain information

>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A	Back alignment and domain information

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant	Back alignment and domain information

>PRK10307 putative glycosyl transferase; Provisional	Back alignment and domain information

>TIGR02470 sucr_synth sucrose synthase	Back alignment and domain information

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family	Back alignment and domain information

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	Back alignment and domain information

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis	Back alignment and domain information

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN00142 sucrose synthase	Back alignment and domain information

>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A	Back alignment and domain information

>PRK10125 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli	Back alignment and domain information

>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Back alignment and domain information

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose	Back alignment and domain information

>PLN02846 digalactosyldiacylglycerol synthase	Back alignment and domain information

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis	Back alignment and domain information

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3	Back alignment and domain information

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional	Back alignment and domain information

>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases	Back alignment and domain information

>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK14985 maltodextrin phosphorylase; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional	Back alignment and domain information

>PRK14986 glycogen phosphorylase; Provisional	Back alignment and domain information

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>PLN02275 transferase, transferring glycosyl groups	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PRK13609 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF15294 Leu_zip: Leucine zipper	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []	Back alignment and domain information

>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>COG4717 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins	Back alignment and domain information

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	Back alignment and domain information

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>KOG3156 consensus Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		720
3vue_A		536	Crystal Structure Of Rice Granule Bound Starch Synt		8e-05

>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536

Back alignment and structure

Iteration: 1

Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 75/203 (36%), Gaps = 46/203 (22%) Query: 512 LHVIHIAAEMAPXXXXXXXXXXXXXXXXXXQKKGHLVEIVLPKYDCMQY----------- 560 ++V+ + AEMAP GH V ++ P+YD QY Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYD--QYKDAWDTSVVAE 67 Query: 561 ----DRIDDLRALDV----VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQ 612 DR + +R V + D F KVW T E + + PD G Sbjct: 68 IKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKI-------YGPDT----GV 116 Query: 613 FYGEHDDXXXXXXXXXAALEL--LLQAGKQP--------DIIH-CHDWQTAFVAPLYWDL 661 Y D+ AALE +L P D++ C+DW T +A + Sbjct: 117 DY--KDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNN 174 Query: 662 YVPKGL-NSARVCFTCHNFEYQG 683 Y P G+ +A+V F HN YQG Sbjct: 175 YQPNGIYRNAKVAFCIHNISYQG 197

PyMOL of 3vue

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		720
2qzs_A		485	Glycogen synthase; glycosyl-transferase, GT-B fold	2e-65
1rzu_A		485	Glycogen synthase 1; glycosyl-transferase, GT-B fo	1e-62
3fro_A		439	GLGA glycogen synthase; glycosyltransferase family	6e-62
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-12
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-10
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	2e-09
2r60_A		499	Glycosyl transferase, group 1; rossmann-fold; 1.80	4e-07
3nb0_A		725	Glycogen [starch] synthase isoform 2; glycogen syn	5e-07
2xs1_A		704	Programmed cell death 6-interacting protein; prote	3e-06
4dvy_P		877	Cytotoxicity-associated immunodominant antigen; on	6e-06
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-06
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-04
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	2e-05
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	2e-05
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	9e-05
3haj_A		486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	3e-04
4dvz_A		569	Cytotoxicity-associated immunodominant antigen; on	3e-04

>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485	Back alignment and structure

 Score =  223 bits (571), Expect = 2e-65
 Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 21/214 (9%)

Query: 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDV 571
           + V+H+ +EM P+ K GGL DV+  L  A    G    ++LP +  ++          D 
Sbjct: 1   MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR------GVTDA 54

Query: 572 VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHH----PDKFFWRGQFYGEHDDFRRFSFFS 627
            V S  D       +      G+ +Y I+  H    P   +     +   D+  RF+   
Sbjct: 55  QVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLG 114

Query: 628 RAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA 685
               E+   L    +PD++H HDW              P     A+  FT HN  YQG  
Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRP-----AKSVFTVHNLAYQGMF 169

Query: 686 PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719
            A  +    L          ++    + +I+ LK
Sbjct: 170 YAHHMNDIQLP-WSFFNIHGLEF---NGQISFLK 199

PyMOL of 2qzs

>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485	Back alignment and structure

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438	Back alignment and structure

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499	Back alignment and structure

>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725	Back alignment and structure

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704	Back alignment and structure

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} Length = 877	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394	Back alignment and structure

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406	Back alignment and structure

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394	Back alignment and structure

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486	Back alignment and structure

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori} Length = 569	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		720
3vue_A		536	GBSS-I, granule-bound starch synthase 1, chloropla	100.0
3fro_A		439	GLGA glycogen synthase; glycosyltransferase family	99.78
1rzu_A		485	Glycogen synthase 1; glycosyl-transferase, GT-B fo	99.74
2qzs_A		485	Glycogen synthase; glycosyl-transferase, GT-B fold	99.72
3nb0_A		725	Glycogen [starch] synthase isoform 2; glycogen syn	99.49
1l5w_A		796	Maltodextrin phosphorylase; enzymatic catalysis, s	99.28
2c4m_A		796	Glycogen phosphorylase; allosteric control, phosph	99.25
2gj4_A		824	Glycogen phosphorylase, muscle form; transferase;	99.19
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	99.17
2r60_A		499	Glycosyl transferase, group 1; rossmann-fold; 1.80	99.14
3s28_A		816	Sucrose synthase 1; glycosyltransferase, sucrose m	98.9
2iuy_A		342	Avigt4, glycosyltransferase; antibiotics, family G	98.36
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	98.33
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	98.32
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	98.23
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	98.17
1f0k_A		364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	98.16
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	98.14
2hy7_A		406	Glucuronosyltransferase GUMK; glycosyltransferases	97.3
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.27
3rsc_A		415	CALG2; TDP, enediyne, structural genomics, PSI-2,	97.2
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.16
3otg_A		412	CALG1; calicheamicin, TDP, structural genomics, PS	97.08
3oti_A		398	CALG3; calicheamicin, TDP, structural genomics, PS	97.08
3ia7_A		402	CALG4; glycosysltransferase, calicheamicin, enediy	97.01
4fzr_A		398	SSFS6; structural genomics, PSI-biology, protein s	97.0
3tsa_A		391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	96.89
3oy2_A		413	Glycosyltransferase B736L; rossmann fold, GDP-mann	96.88
1ygp_A		879	Yeast glycogen phosphorylase; phosphorylated form,	96.58
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.57
3h4t_A		404	Glycosyltransferase GTFA, glycosyltransferase; van	96.46
1vgv_A		384	UDP-N-acetylglucosamine 2-epimerase; structural ge	96.27
2iyf_A		430	OLED, oleandomycin glycosyltransferase; antibiotic	95.89
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.81
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.81
3beo_A		375	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a	95.74
1uqt_A		482	Alpha, alpha-trehalose-phosphate synthase; glycosy	95.69
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.68
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.57
2x0d_A		413	WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge	95.27
1v4v_A		376	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t	95.24
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	94.88
2p6p_A		384	Glycosyl transferase; X-RAY-diffraction,urdamycina	94.61
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	93.89
3s2u_A		365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	93.85
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	93.05
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.58
4amg_A		400	Snogd; transferase, polyketide biosynthesis, GT1 f	90.8
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.05
1rrv_A		416	Glycosyltransferase GTFD; GT-B, glycosyltransferas	89.39
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	88.12
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	87.18
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	84.44
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	81.59
4dvz_A		569	Cytotoxicity-associated immunodominant antigen; on	80.84

>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*	Back alignment and structure

Probab=100.00  E-value=5.4e-42  Score=373.47  Aligned_cols=205  Identities=29%  Similarity=0.460  Sum_probs=154.7

Q ss_pred             CCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEE
Q 005005          506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNK  585 (720)
Q Consensus       506 ~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~  585 (720)
                      ..+++.|||||||+||+||+|||||||||++||+||+++||+|+||||+|+.+... .    .........+.+....++
T Consensus         4 ~~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~-~----~~~~~~~~~~~~~~~~~~   78 (536)
T 3vue_A            4 HHHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDA-W----DTSVVAEIKVADRYERVR   78 (536)
T ss_dssp             ----CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTC-E----EEEEEEEEEETTEEEEEE
T ss_pred             ccCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhh-c----ccceEEEEEecCceEEEE
Confidence            45788999999999999999999999999999999999999999999999987531 1    111112222344556788


Q ss_pred             EEEEEeCCceEEecCCCCCCCCCCC------CCCCC------CcchHHHHHHHHHHHHHHHHhcC-----------CCCc
Q 005005          586 VWVSTIEGLPVYFIEPHHPDKFFWR------GQFYG------EHDDFRRFSFFSRAALELLLQAG-----------KQPD  642 (720)
Q Consensus       586 Vw~~~vdGVpVYFID~~~Pe~fF~R------~~IYG------~~DDaeRFafFSRAALElL~klg-----------~kPD  642 (720)
                      +|+...+||++|||+++  . ||.|      +.+||      +.||.+||++||+|+++++..++           +.||
T Consensus        79 ~~~~~~~gv~~y~id~~--~-~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~dd  155 (536)
T 3vue_A           79 FFHCYKRGVDRVFIDHP--S-FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDV  155 (536)
T ss_dssp             EEECEETTEEEEEEECT--T-TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCE
T ss_pred             EEEEEECCceEEEecCh--h-hhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCE
Confidence            99999999999999965  3 7776      35786      36999999999999999987653           4578


Q ss_pred             EEEECchhhhhHHHHHH-HhhCcC-CCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCC---cccCCCCCCCCcc
Q 005005          643 IIHCHDWQTAFVAPLYW-DLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINP  717 (720)
Q Consensus       643 IIHcHDWHTALVaPLyL-k~y~~~-gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D---~leD~~~~G~INf  717 (720)
                      ||||||||||++ |+++ ..+... .+.++|+||||||++|||.|+...+..++++...+...+   .+....+++.+|+
T Consensus       156 IiH~hDW~t~l~-~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  234 (536)
T 3vue_A          156 VFVCNDWHTGPL-ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINW  234 (536)
T ss_dssp             EEEEESGGGSTH-HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEH
T ss_pred             EEEECcchHHHH-HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhH
Confidence            999999999999 5555 444433 357899999999999999999999999998875432222   2233346788899


Q ss_pred             cC
Q 005005          718 LK  719 (720)
Q Consensus       718 LK  719 (720)
                      ||
T Consensus       235 ~k  236 (536)
T 3vue_A          235 MK  236 (536)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

PyMOL of 3vue

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*	Back alignment and structure

>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A	Back alignment and structure

>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A	Back alignment and structure

>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*	Back alignment and structure

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*	Back alignment and structure

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}	Back alignment and structure

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*	Back alignment and structure

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*	Back alignment and structure

>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*	Back alignment and structure

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*	Back alignment and structure

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*	Back alignment and structure

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*	Back alignment and structure

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*	Back alignment and structure

>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*	Back alignment and structure

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*	Back alignment and structure

>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}	Back alignment and structure

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*	Back alignment and structure

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*	Back alignment and structure

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*	Back alignment and structure

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*	Back alignment and structure

>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A	Back alignment and structure

>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*	Back alignment and structure

>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		720
d1rzua_		477	c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte	6e-40
d2bisa1		437	c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro	7e-26

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  151 bits (381), Expect = 6e-40
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 23/215 (10%)

Query: 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVV 572
           +V+ +++E+ P+ K GGL DVV  L  AL+  G     ++P Y  ++    D ++  +  
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFE-- 59

Query: 573 VESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYG------EHDDFRRFSFF 626
              + D    K  +     E L +  ++   P  +   G  Y         D+++RF+  
Sbjct: 60  ---FTDLLGEKADLLEVQHERLDLLILD--APAYYERSGGPYLGQTGKDYPDNWKRFAAL 114

Query: 627 SRAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGT 684
           S AA  +   +  G +PD++H HDWQ A           P+         T HN  +QG 
Sbjct: 115 SLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPE----IPSLLTIHNIAFQGQ 170

Query: 685 APAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719
             A   +   L          M+    ++ ++ LK
Sbjct: 171 FGANIFSKLALPAHAFG----MEGIEYYNDVSFLK 201

PyMOL of d1rzua_

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		720
d1rzua_		477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	99.97
d2bisa1		437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.87
d1l5wa_		796	Maltodextrin phosphorylase (MALP) {Escherichia col	98.02
d2iw1a1		370	Lipopolysaccharide core biosynthesis protein RfaG	97.74
d2gj4a1		824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	97.62
d1ygpa_		876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	97.21
d1rrva_		401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	94.45
d1iira_		401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	90.75
d1uqta_		456	Trehalose-6-phosphate synthase, OtsA {Escherichia	90.6
d1pn3a_		391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	89.27
d1f0ka_		351	Peptidoglycan biosynthesis glycosyltransferase Mur	86.32
d2c1xa1		450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	84.54
d1jaya_		212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	84.52

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=5.7e-31  Score=272.92  Aligned_cols=191  Identities=25%  Similarity=0.431  Sum_probs=145.8

Q ss_pred             ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005          512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI  591 (720)
Q Consensus       512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v  591 (720)
                      |||+|||+|++|++|+||||+||++|+++|+++||+|+||+|+|+++.......++.+.  .   .......+.++....
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~   75 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFE--F---TDLLGEKADLLEVQH   75 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEE--E---SCSSSCCEEEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEEE--E---eccCCceEEEEEEEE
Confidence            99999999999999999999999999999999999999999999987553222222221  1   111122467888889


Q ss_pred             CCceEEecCCCCCCCCCCCC-CCC------CCcchHHHHHHHHHHHHHHHHhc--CCCCcEEEECchhhhhHHHHHHHhh
Q 005005          592 EGLPVYFIEPHHPDKFFWRG-QFY------GEHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWDLY  662 (720)
Q Consensus       592 dGVpVYFID~~~Pe~fF~R~-~IY------G~~DDaeRFafFSRAALElL~kl--g~kPDIIHcHDWHTALVaPLyLk~y  662 (720)
                      .|+++||++++  . ||.|. .+|      .++|+..+|..|++++++++...  +++|||||+||||++++ +.+++..
T Consensus        76 ~~v~~~~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~-~~~~~~~  151 (477)
T d1rzua_          76 ERLDLLILDAP--A-YYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA  151 (477)
T ss_dssp             TTEEEEEEECH--H-HHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS
T ss_pred             CCeeEEEecCh--h-hcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhcccCCCCCEEEecchhHHHH-HHHHHHh
Confidence            99999999864  2 55543 333      23589999999999999988764  78999999999999998 4454322


Q ss_pred             CcCCCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCccc
Q 005005          663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL  718 (720)
Q Consensus       663 ~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfL  718 (720)
                       .  ..++|+|+|+||+.|++.++...+..++.++..+. ..+..   +++.++++
T Consensus       152 -~--~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~  200 (477)
T d1rzua_         152 -E--TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFG-MEGIE---YYNDVSFL  200 (477)
T ss_dssp             -S--SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSS-TTTTE---ETTEEEHH
T ss_pred             -h--CCCCCEEEEEecccccccCCHHHHHHhhcchhhcc-ccccc---ccchhHHH
Confidence             1  34689999999999999999999999988877643 33332   45555543

PyMOL of d1rzua_

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}	Back information, alignment and structure

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure