Citrus Sinensis ID: 005012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
cccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHccccccHccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccccccccccccccHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccc
manksaspsslpksgavsrgynfastweqnaplseQQQAAIGSLFHVvaerpfpvnlaqehvpgqdnglsvatkdhsfgesDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAasfyspnmnvgngnFFHLLKRLDECIlyvegnpqyaESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSsggsktsvseGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISefskketlpsltrsGCAYLMQVCQLEHqlfdhffpsssedisslaplidplstflydilrpklihETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEianyipsdedlnypskleqsagtklettpadenpdvyktwypplekTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAkrstpmdgQLFLIKYLLILREqiapfdiefsvthkeldFSHLLEHLRRILRGQaslfdwsrstslartlsprvLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSsgnqnqnvdslmakplkdqafatPDKVAELVHKVCHVIKCLFALF
manksaspsslpksgaVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIrssggsktsvseGVEASLIYVRFKAAASELKpvleeiesrsskKEYVQILEECHKLYCEQRLSLVKGIVQQRisefskketlpslTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLgeqlsrrseslaglrptlERILADVHERLTFRARTHIRDEIanyipsdedlnypSKLEQSAGtklettpadenpdvYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLiakrstpmdGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQaslfdwsrstslartlsprvlesQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
**************************************AAIGSLFHVVAERPFPVNLAQ******************FGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHV******************************ASLIYVRFKAAASELKPVL**********EYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSR***SLAGLRPTLERILADVHERLTFRARTHIRDEIANYIP****************************DVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLART******************SLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALS*******************AFATPDKVAELVHKVCHVIKCLFAL*
************************STWEQNAPLSEQQQAAIGSLFHVVAE***************************************NTNQFYNWFTDLELA*****EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY*****VGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSAS********************VEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVL************GLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDL************************VYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQK***********MDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVT**************************AFATPDKVAELVHKVCHVIKCLFALF
*****************SRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVL***********************GVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
************************S*WEQNAPLSEQQQAAIGSLFHVVAERPFPVNL****************************AVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSA***********NPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
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MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVxxxxxxxxxxxxxxxxxxxxxFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLFALF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query719 2.2.26 [Sep-21-2011]
Q96JB2828 Conserved oligomeric Golg yes no 0.841 0.730 0.350 1e-110
Q8CI04820 Conserved oligomeric Golg yes no 0.934 0.819 0.333 1e-110
Q16ZN9 899 Conserved oligomeric Golg N/A no 0.933 0.746 0.313 1e-101
Q961G1 905 Conserved oligomeric Golg yes no 0.867 0.689 0.309 7e-99
Q29N70 914 Conserved oligomeric Golg yes no 0.869 0.683 0.303 4e-97
Q54TT4 925 Conserved oligomeric Golg yes no 0.937 0.728 0.293 1e-91
P40094801 Conserved oligomeric Golg yes no 0.717 0.644 0.249 5e-40
Q9Y7Z4735 Conserved oligomeric Golg yes no 0.709 0.693 0.237 1e-36
>sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3 Back     alignment and function desciption
 Score =  400 bits (1029), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/668 (35%), Positives = 369/668 (55%), Gaps = 63/668 (9%)

Query: 93  QFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVA 152
           QF++WF  L+  M  +   KYR   + L G  + CD IL  V+  L     LQ Q+  V+
Sbjct: 107 QFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQYLFVS 166

Query: 153 TKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLL 212
            KT TLH+AC++L+ E+  L++ AE +Q KL YF+ELE I     SP ++V +  F  +L
Sbjct: 167 NKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSDGFIPML 226

Query: 213 KRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSG 272
            +LD+CI Y+  +P + +  +YLLKF+Q  S+AL +++++ ++ L++ +SQ+   ++   
Sbjct: 227 AKLDDCITYISSHPNFKDYPIYLLKFKQCLSKALHLMKTYTVNTLQTLTSQL---LKRDP 283

Query: 273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLS 331
            S  +       +L YV+F+AAA +++ ++E+IE RS K  EY Q+L + H+ Y +QR  
Sbjct: 284 SSVPNADNAF--TLFYVKFRAAAPKVRTLIEQIELRSEKIPEYQQLLNDIHQCYLDQREL 341

Query: 332 LVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPL 389
           L+   +   ++E + +      +L RSGCA+++ VCQ EHQL++ FF   ++  S L  L
Sbjct: 342 LLGPSIACTVAELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF---TKPTSKLDEL 398

Query: 390 IDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILA 449
           ++ L   LYD+ RP +IH  +++ L EL  ILK EVL + +   +E L      ++++L 
Sbjct: 399 LEKLCVSLYDVFRPLIIHVIHLETLSELCGILKNEVLEDHVQNNAEQLGAFAAGVKQMLE 458

Query: 450 DVHERLTFRARTHIRDEIANYIPSDEDLNYPSKL-------------------------- 483
           DV ERL +R   +I+ +I  Y P+  DL YP KL                          
Sbjct: 459 DVQERLVYRTHIYIQTDITGYKPAPGDLAYPDKLVMMEQIAQSLKDEQKKVPSEASFSDV 518

Query: 484 --EQSAGTKLETTPADE--NP---------DVYKTWYPPLEKTVSCLSKLYQCLEQAVFT 530
             E+     L  + + E  NP         D++  WYP + +T+ CLSKLY+C+++AVF 
Sbjct: 519 HLEEGESNSLTKSGSTESLNPRPQTTISPADLHGMWYPTVRRTLVCLSKLYRCIDRAVFQ 578

Query: 531 GLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELD 590
           GL+QEA+  C +S+  AS+ I+K  T +DGQLFLIK+LLILREQIAPF  EF++    LD
Sbjct: 579 GLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIAPFHTEFTIKEISLD 638

Query: 591 FSHLLEHLRRILRGQA--SLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKATCE 645
                +   +IL        F  + + +L   L   +P + E  +D+KK++++ LK+ CE
Sbjct: 639 LKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLDSKKDVDRHLKSACE 698

Query: 646 EFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELV 705
           +FI   TKL V+ +  F+ KV+A+K   S G             L  Q +A P KV +L 
Sbjct: 699 QFIQQQTKLFVEQLEEFMTKVSALKTMASQGGPKYT--------LSQQPWAQPAKVNDLA 750

Query: 706 HKVCHVIK 713
                 IK
Sbjct: 751 ATAYKTIK 758
Involved in ER-Golgi transport.
Homo sapiens (taxid: 9606)
>sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3 Back     alignment and function description
>sp|Q16ZN9|COG3_AEDAE Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti GN=Cog3 PE=3 SV=1 Back     alignment and function description
>sp|Q961G1|COG3_DROME Conserved oligomeric Golgi complex subunit 3 OS=Drosophila melanogaster GN=Cog3 PE=1 SV=1 Back     alignment and function description
>sp|Q29N70|COG3_DROPS Conserved oligomeric Golgi complex subunit 3 OS=Drosophila pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1 Back     alignment and function description
>sp|Q54TT4|COG3_DICDI Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3 PE=3 SV=1 Back     alignment and function description
>sp|P40094|COG3_YEAST Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
359484460783 PREDICTED: conserved oligomeric Golgi co 0.983 0.902 0.858 0.0
297839205784 hypothetical protein ARALYDRAFT_895203 [ 0.991 0.909 0.822 0.0
30698937784 sec34-like protein [Arabidopsis thaliana 0.991 0.909 0.817 0.0
22654989784 At1g73430/T9L24_16 [Arabidopsis thaliana 0.991 0.909 0.816 0.0
356547986783 PREDICTED: conserved oligomeric Golgi co 0.981 0.901 0.820 0.0
356565620782 PREDICTED: LOW QUALITY PROTEIN: conserve 0.981 0.902 0.818 0.0
357479305783 Conserved oligomeric Golgi complex subun 0.981 0.901 0.801 0.0
357479307781 Conserved oligomeric Golgi complex subun 0.976 0.898 0.803 0.0
449449220779 PREDICTED: conserved oligomeric Golgi co 0.990 0.913 0.781 0.0
242079365740 hypothetical protein SORBIDRAFT_07g02213 0.976 0.948 0.763 0.0
>gi|359484460|ref|XP_002273836.2| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis vinifera] gi|297738499|emb|CBI27744.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/708 (85%), Positives = 659/708 (93%), Gaps = 1/708 (0%)

Query: 1   MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
           MA K AS ++LPKS A+S+GYNFASTWEQNAPL+EQQQAAI +L H VAERPFP NL+ E
Sbjct: 1   MATKPAS-ATLPKSAAISKGYNFASTWEQNAPLTEQQQAAIATLSHAVAERPFPANLSHE 59

Query: 61  HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
           H+ G++NGLSV TKD+++ +S AIE VLVNTNQFY WFTDLE AMKSETEEKYRHYVNTL
Sbjct: 60  HISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLESAMKSETEEKYRHYVNTL 119

Query: 121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
             RIQTCDDIL QVD TLDLFNELQLQH AVATKTKTLHDACDRL++EKQRLIEFAEA++
Sbjct: 120 TERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRLLVEKQRLIEFAEALR 179

Query: 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
           SKL YFDELEN+A SFYSPNMNVGN NF  LLKRLDECI YVE NPQYAESSVYL+KFRQ
Sbjct: 180 SKLNYFDELENVATSFYSPNMNVGNENFLPLLKRLDECISYVESNPQYAESSVYLVKFRQ 239

Query: 241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
           LQSRALGMIRSHV+SVLKSASSQVQAAIRSSGGSK +VSE VEAS+IYVRFKAAASELKP
Sbjct: 240 LQSRALGMIRSHVVSVLKSASSQVQAAIRSSGGSKAAVSESVEASVIYVRFKAAASELKP 299

Query: 301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
           +LE+IESRSS+KEYVQIL ECH+LYCEQR SL++GIV QRISEF+KKE LPSLTRSGCAY
Sbjct: 300 LLEDIESRSSRKEYVQILSECHRLYCEQRFSLIRGIVHQRISEFAKKEALPSLTRSGCAY 359

Query: 361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
           LMQVCQLEHQLFDHFFPSSSEDIS+LAPLIDPL T+LYD LRPKLIHETN+D LCEL+DI
Sbjct: 360 LMQVCQLEHQLFDHFFPSSSEDISNLAPLIDPLCTYLYDTLRPKLIHETNLDFLCELIDI 419

Query: 421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
           LKVEVLGEQ+SRR ESLAGLRPTL RILADVHERLTFRARTHIRDEIANY+PS++DL+YP
Sbjct: 420 LKVEVLGEQISRRGESLAGLRPTLHRILADVHERLTFRARTHIRDEIANYLPSEDDLDYP 479

Query: 481 SKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVC 540
           +KLEQSA +K  TT ADENPDV+KTWYPPLEKT+SCLSKLY+CLE AVFTGLAQEAVEVC
Sbjct: 480 AKLEQSAESKSGTTSADENPDVFKTWYPPLEKTLSCLSKLYRCLEPAVFTGLAQEAVEVC 539

Query: 541 SESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 600
           S SIQKASKL+ KRS+PMDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLRR
Sbjct: 540 SLSIQKASKLVVKRSSPMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 599

Query: 601 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPML 660
           ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIM+VTKLVVDPML
Sbjct: 600 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMSVTKLVVDPML 659

Query: 661 SFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKV 708
           SFV KVTAVKVALSSG+QNQ +DS+MAKPLKDQAFATPDKVAELV KV
Sbjct: 660 SFVTKVTAVKVALSSGSQNQKLDSVMAKPLKDQAFATPDKVAELVQKV 707

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297839205|ref|XP_002887484.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] gi|297333325|gb|EFH63743.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30698937|ref|NP_177485.2| sec34-like protein [Arabidopsis thaliana] gi|186495067|ref|NP_001117595.1| sec34-like protein [Arabidopsis thaliana] gi|332197338|gb|AEE35459.1| sec34-like protein [Arabidopsis thaliana] gi|332197339|gb|AEE35460.1| sec34-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22654989|gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356547986|ref|XP_003542385.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356565620|ref|XP_003551037.1| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357479305|ref|XP_003609938.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510993|gb|AES92135.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|357479307|ref|XP_003609939.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510994|gb|AES92136.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|449449220|ref|XP_004142363.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242079365|ref|XP_002444451.1| hypothetical protein SORBIDRAFT_07g022130 [Sorghum bicolor] gi|241940801|gb|EES13946.1| hypothetical protein SORBIDRAFT_07g022130 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
TAIR|locus:2206890784 AT1G73430 "AT1G73430" [Arabido 0.991 0.909 0.817 4.6e-311
UNIPROTKB|J9P4I0830 COG3 "Uncharacterized protein" 0.623 0.539 0.337 3.9e-110
UNIPROTKB|E2RN33833 COG3 "Uncharacterized protein" 0.623 0.537 0.337 3.4e-109
RGD|1304555828 Cog3 "component of oligomeric 0.653 0.567 0.331 5.6e-109
UNIPROTKB|F1LLY2802 Cog3 "Protein Cog3" [Rattus no 0.653 0.586 0.331 5.6e-109
ZFIN|ZDB-GENE-050913-26824 cog3 "component of oligomeric 0.534 0.466 0.387 1.5e-108
UNIPROTKB|Q96JB2828 COG3 "Conserved oligomeric Gol 0.646 0.561 0.327 1.7e-107
MGI|MGI:2450151820 Cog3 "component of oligomeric 0.618 0.542 0.337 2.4e-106
UNIPROTKB|E1BGA6 832 COG3 "Uncharacterized protein" 0.648 0.560 0.334 2.2e-105
UNIPROTKB|Q16ZN9 899 Cog3 "Conserved oligomeric Gol 0.620 0.496 0.327 6.6e-102
TAIR|locus:2206890 AT1G73430 "AT1G73430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2984 (1055.5 bits), Expect = 4.6e-311, P = 4.6e-311
 Identities = 584/714 (81%), Positives = 646/714 (90%)

Query:     1 MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
             MA K+AS SSLPKSGA+S+GYNFASTWEQ+APL+EQQQAAI SL H VAERPFP NL  E
Sbjct:     1 MATKAASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60

Query:    61 HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
             HV   +NGLSV+ +D   G+S AIEAVLVNTNQFY WFTDLE AMKSETEEKYRHYV+TL
Sbjct:    61 HVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLESAMKSETEEKYRHYVSTL 120

Query:   121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
               RIQTCD+IL QVD TLDLFNELQLQH  V TKTKTLHDACDRL++EKQ+L+EFAEA++
Sbjct:   121 TERIQTCDNILHQVDETLDLFNELQLQHQGVTTKTKTLHDACDRLLMEKQKLMEFAEALR 180

Query:   181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
             SKL YFDELEN++++FYSPNMNV N NF  LLKRLDECI Y+E NPQYAESSVYLLKFRQ
Sbjct:   181 SKLNYFDELENVSSNFYSPNMNVSNSNFLPLLKRLDECISYIEDNPQYAESSVYLLKFRQ 240

Query:   241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
             LQSRALGMIR+++L+VLK+A+SQVQAA R +GG+KTSVSEGVEAS+IYVRFKAAA+ELKP
Sbjct:   241 LQSRALGMIRTYILAVLKTAASQVQAAFRGTGGNKTSVSEGVEASVIYVRFKAAANELKP 300

Query:   301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
             VLEEIESRS++KEYVQIL ECH+LYCEQRLSLVKGIV QR+S+F+KKE LPSLTRSGCAY
Sbjct:   301 VLEEIESRSARKEYVQILAECHRLYCEQRLSLVKGIVHQRVSDFAKKEALPSLTRSGCAY 360

Query:   361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
             LMQVC +EHQLF HFFP+SSE++SSLAPL+DPLST+LYDILRPKLIHE N+DLLCELV I
Sbjct:   361 LMQVCHMEHQLFTHFFPASSEEVSSLAPLVDPLSTYLYDILRPKLIHEANIDLLCELVHI 420

Query:   421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
             LKVEVLG+Q +R+SE LAGLRPTL+RILADV+ERLTFRART+IRDEIANY PSDEDL+YP
Sbjct:   421 LKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANYTPSDEDLDYP 480

Query:   481 SKLEQSAGTKLETTPAD-ENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEV 539
             +KLE S  T  ET   D EN DV+KTWYPPLEKT+SCLSKLY+CLEQAVFTGLAQEAVEV
Sbjct:   481 AKLEGSPNTTSETDLRDDENADVFKTWYPPLEKTLSCLSKLYRCLEQAVFTGLAQEAVEV 540

Query:   540 CSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 599
             CS SIQKASKLI KRST MDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLR
Sbjct:   541 CSLSIQKASKLIIKRSTTMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 600

Query:   600 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPM 659
             RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEK LK TCEEFIM+VTKLVVDPM
Sbjct:   601 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKCLKTTCEEFIMSVTKLVVDPM 660

Query:   660 LSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIK 713
             LSFV KVTA+KVALSSG QN  VDS+MAKPLK+QAFATPDKV ELV KV   I+
Sbjct:   661 LSFVTKVTAIKVALSSGTQNHKVDSVMAKPLKEQAFATPDKVVELVQKVYAAIQ 714
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005801 "cis-Golgi network" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|J9P4I0 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN33 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1304555 Cog3 "component of oligomeric golgi complex 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LLY2 Cog3 "Protein Cog3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-26 cog3 "component of oligomeric golgi complex 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96JB2 COG3 "Conserved oligomeric Golgi complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2450151 Cog3 "component of oligomeric golgi complex 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGA6 COG3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q16ZN9 Cog3 "Conserved oligomeric Golgi complex subunit 3" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8CI04COG3_MOUSENo assigned EC number0.33330.93460.8195yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_202277.1
annotation not avaliable (784 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__1174__AT5G11980.1
annotation not avaliable (568 aa)
    ••• 0.573
scaffold_103525.1
annotation not avaliable (680 aa)
   •••• 0.560
fgenesh2_kg.7__1785__AT4G24840.1
annotation not avaliable (756 aa)
    ••• 0.473
fgenesh2_kg.2__1031__AT1G67930.1
annotation not avaliable (832 aa)
   • •• 0.438

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
pfam04136157 pfam04136, Sec34, Sec34-like family 2e-32
>gnl|CDD|112929 pfam04136, Sec34, Sec34-like family Back     alignment and domain information 
 Score =  122 bits (307), Expect = 2e-32
 Identities = 49/153 (32%), Positives = 82/153 (53%)

Query: 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171
                +N L      CD IL Q +        L+ ++  V+ KT  L +AC++L  E+ R
Sbjct: 1   DAEKKINYLQTFTNICDQILGQTNNAESTLLSLKEKYEFVSKKTSELSEACEQLSTEQMR 60

Query: 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAES 231
           L E A+ +Q  L YF  LE +     SP ++V + +F   L +LD CI+Y+E NP + +S
Sbjct: 61  LSELADGIQKGLTYFAPLEELNRVLRSPTLSVASVSFKEHLTKLDTCIMYIEENPDFKDS 120

Query: 232 SVYLLKFRQLQSRALGMIRSHVLSVLKSASSQV 264
             YL K++Q  S+A+ + + + + ++K  + QV
Sbjct: 121 PHYLGKYKQCLSKAMDLFKPYFIRIIKQTTDQV 153

Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tether vesicles to the Golgi. Length = 157

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 719
KOG2604733 consensus Subunit of cis-Golgi transport vesicle t 100.0
PF04136157 Sec34: Sec34-like family ; InterPro: IPR007265 Sec 100.0
PF06419618 COG6: Conserved oligomeric complex COG6; InterPro: 98.69
KOG3758655 consensus Uncharacterized conserved protein [Funct 97.43
KOG2604733 consensus Subunit of cis-Golgi transport vesicle t 96.67
PF09763701 Sec3_C: Exocyst complex component Sec3; InterPro: 96.15
PF04129508 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V 96.06
KOG1961683 consensus Vacuolar sorting protein VPS52/suppresso 90.67
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 83.87
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 82.42
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3e-142  Score=1178.99  Aligned_cols=682  Identities=41%  Similarity=0.664  Sum_probs=620.4

Q ss_pred             CCCcccccccchHhhhhhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCCcchhhhhcCh
Q 005012           12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT   91 (719)
Q Consensus        12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   91 (719)
                      +..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.+...      |-.+     +..++.++
T Consensus         3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~~------d~~l-----~~~~~~~~   71 (733)
T KOG2604|consen    3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTSQ------DISL-----GEENLTNT   71 (733)
T ss_pred             chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCCC------CccC-----Ccccccch
Confidence            445677777878888888999999999999999999999999999988754321111      2222     24678999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005012           92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR  171 (719)
Q Consensus        92 ~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~  171 (719)
                      .+|+.||+++...|...++.+|+.|+++|....++|+.+|+|++++++.|++|..+|++|+.||++||++||+|+.||.+
T Consensus        72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k  151 (733)
T KOG2604|consen   72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK  151 (733)
T ss_pred             hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 005012          172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS  251 (719)
Q Consensus       172 L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~  251 (719)
                      |.++||.|+.+|+||++||+++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus       152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~  231 (733)
T KOG2604|consen  152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT  231 (733)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhh
Q 005012          252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS  331 (719)
Q Consensus       252 ~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~  331 (719)
                      |++|+|++++++|.++-++     .....++.++++|+||.++|+++|+++++||+|+..+||.++|.+||+.||++|.+
T Consensus       232 y~~~vlkq~t~q~l~~~~~-----~~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~  306 (733)
T KOG2604|consen  232 YFTNVLKQTTSQVLKRSKN-----MNPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR  306 (733)
T ss_pred             HHHHHHHHHHHHHhccCCC-----CCCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998766221     12233677899999999999999999999999998899999999999999999999


Q ss_pred             hhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhchhCCCCccChhchhhhHHHHHHHHHHhhcccccccCCH
Q 005012          332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV  411 (719)
Q Consensus       332 LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYD~lRp~Ii~e~~L  411 (719)
                      |++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+   ...++.|+++||.++||..||+|+|+.|+
T Consensus       307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l  383 (733)
T KOG2604|consen  307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL  383 (733)
T ss_pred             ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence            999999999999998889999999999999999999999999999987   35799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCCchhhhhccCCCC
Q 005012          412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL  491 (719)
Q Consensus       412 ~~Lcel~~iL~~e~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRaq~yi~~~I~~Y~P~~~DL~yP~kL~~~~~~~~  491 (719)
                      ++||+.|++++.++++++.+   ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus       384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~  460 (733)
T KOG2604|consen  384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ  460 (733)
T ss_pred             HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence            99999999999999988765   333478999999999999999999999999999999999999999999998532111


Q ss_pred             CC---CC------CCCCccccccCCchHHHHHHHHHhhhhccChhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 005012          492 ET---TP------ADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL  562 (719)
Q Consensus       492 ~~---~~------~~~~~~~~~~wYPpl~ktL~lLSkLy~~v~~~VF~~LA~eaV~~Ci~SL~~As~~I~~~~~~~D~~L  562 (719)
                      +.   ++      .........+| |||+|||.||||||||||+.||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus       461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L  539 (733)
T KOG2604|consen  461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL  539 (733)
T ss_pred             hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence            00   00      01112334567 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhccCcccccccccccccchhHHHHHHHHHccCCccccccchhhhhh---hccchhhhhhhhhHHHHHHH
Q 005012          563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS  639 (719)
Q Consensus       563 FlIKhLLiLReQI~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~l~P~v~e~~~Dsk~eld~~  639 (719)
                      |+|||||||||||+||+|+|+++|+++|||++++++++++.+...+|+.+++|++++   .++|+|+++++|+|+|||.+
T Consensus       540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q  619 (733)
T KOG2604|consen  540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ  619 (733)
T ss_pred             hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999888999999988665   55999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhcCCCCcccccccccccccCCCCCHHHHHHHHHHHHHHHHhhh
Q 005012          640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLF  716 (719)
Q Consensus       640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fA~p~~i~~~~~~~~~~~~~~~  716 (719)
                      ||.+|+.||+.++.++++|+.+|+.++.+.+.....+.++-+......+.+.+++||+|..|..++++++..++...
T Consensus       620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~  696 (733)
T KOG2604|consen  620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKL  696 (733)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999887765555554444455677999999999999999999999998654

>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1 Back     alignment and domain information
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation Back     alignment and domain information
>KOG3758 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8 Back     alignment and domain information
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 100/657 (15%), Positives = 223/657 (33%), Gaps = 173/657 (26%)

Query: 113 YRHYVNTLMGRIQ-TCDDILR--QVDGTLDL-FNELQLQHHAVATKTKTLHDACDRLVIE 168
           + H+++   G  Q    DIL   +     +    ++Q    ++ +K +      D +++ 
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMS 57

Query: 169 KQRLIEFAEAVQSKLKYFDEL----ENIAASFYSPNMNVGNGNFFHLLKRL-DECI---- 219
           K         V   L+ F  L    E +   F    + +   N+  L+  +  E      
Sbjct: 58  KDA-------VSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSM 107

Query: 220 ---LYVEG-NPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAA----IRSS 271
              +Y+E  +  Y ++ V    F +       + R      L+ A  +++ A    I   
Sbjct: 108 MTRMYIEQRDRLYNDNQV----FAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 272 GGS-KTS-VSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEE-CHKL---Y 325
            GS KT    +   +  +  +       L      +++ +S +  +++L++  +++   +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 326 CEQ-----RLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLM--QVCQLEHQLFDHFFPS 378
             +      + L    +Q  +    K +   +        L+   V   +   ++ F  S
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CLLVLLNVQNAKA--WNAFNLS 265

Query: 379 S-----SEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRR 433
                 +        + D LS          L H +      E+  +L ++ L  +    
Sbjct: 266 CKILLTTRFKQ----VTDFLSAATTT--HISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318

Query: 434 SESLAGLRPTLERILADVHERLTFRARTHIRDEIA---NYIPSDEDLNYPSKLEQSAGTK 490
              +    P    I+A+            IRD +A   N+    + +N   KL     T 
Sbjct: 319 PREVLTTNPRRLSIIAES-----------IRDGLATWDNW----KHVNC-DKLT----TI 358

Query: 491 LETTPADENPDVYKTWYPPL---EKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKA 547
           +E++     P  Y+  +  L     +    + L   +    +  + +  V V    + K 
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKY 414

Query: 548 SKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKEL------------------ 589
           S L+ K+  P +  + +    + L  +    + E+++ H+ +                  
Sbjct: 415 S-LVEKQ--PKESTISI--PSIYLELK-VKLENEYAL-HRSIVDHYNIPKTFDSDDLIPP 467

Query: 590 --D---FSHLLEHLRRILRGQ-ASLF-----D--------------WSRSTSLARTLSP- 623
             D   +SH+  HL+ I   +  +LF     D              W+ S S+  TL   
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 624 RVLESQI-DAKKELEKSLKATCEEFIMAV-TKLVVDPMLSFVAKVTAVKVALSSGNQ 678
           +  +  I D   + E+ + A   +F+  +   L+             +++AL + ++
Sbjct: 528 KFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDL------LRIALMAEDE 577
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
2b1e_A564 Exocyst complex component EXO70; tethering complex 96.16
2pft_A571 Exocytosis protein; helix-turn-helix, endocytosis- 95.78
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A Back     alignment and structure
Probab=96.16  E-value=1.2  Score=50.70  Aligned_cols=182  Identities=16%  Similarity=0.146  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhcccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcChHHHHHHHHHHHHHHH
Q 005012          172 LIEFAEAVQSKLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRAL  246 (719)
Q Consensus       172 L~~lae~I~~~L~yF~~Le~itr~L~-sp~~~V~~~~F~~~L~~LD~ci~Fl~~h----p~fkda~~Y~~rfkqcltRAl  246 (719)
                      ++..-+.|.+-+.||+.....-..+. +|. .++-+.|...|.+|+++++||+.|    +++|+.+-=+.+++.++.+++
T Consensus         5 Id~~l~~i~~v~~~~~~~~~~e~iI~~Gp~-~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~   83 (564)
T 2b1e_A            5 IESTLNSVASVKDLANEASKYEIILQKGIN-QVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSE   83 (564)
T ss_dssp             ---CCGGGCCHHHHHHHHHHHHHHHHTCHH-HHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHH
Confidence            33444455566666665555444443 343 367789999999999999999874    478888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 005012          247 GMIRSHVLSVLKSASSQVQ--AAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKL  324 (719)
Q Consensus       247 ~LIr~~~~~~L~~~~~~V~--~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~  324 (719)
                      .-+..+|.+.|+. +.-+.  .-+..... -+.++            .+....++.+...+....       .-.+|.+.
T Consensus        84 ~~L~~~F~~lL~~-s~p~~p~~~i~k~~p-~p~l~------------~~~l~~L~~Ia~~m~~~g-------~~~~~~~i  142 (564)
T 2b1e_A           84 AQLRVYFISILNS-IKPFDPQINITKKMP-FPYYE------------DQQLGALSWILDYFHGNS-------EGSIIQDI  142 (564)
T ss_dssp             HHHHHHHHHHHTT-SCCCCHHHHHHHTCC-CCCCC------------HHHHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCCHHHhhccCCC-CCCCC------------HHHHHHHHHHHHHHHhcC-------CchHHHHH
Confidence            9999999988874 11000  00111000 00000            122335555555544432       13579999


Q ss_pred             HHHHHhhhhhHHHHHHHHhHhc------c------CCchhhHHhHHHHHHHHHHHHHHhhchhCCCC
Q 005012          325 YCEQRLSLVKGIVQQRISEFSK------K------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS  379 (719)
Q Consensus       325 Yf~~R~~LL~p~i~~~l~e~~~------~------~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~  379 (719)
                      |.+.|...|...+.    .+..      +      +....-+..-..-+..+.+.|+.|..+.|+..
T Consensus       143 Y~~~R~~~l~~sL~----~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~vf~~~  205 (564)
T 2b1e_A          143 LVGERSKLILKCMA----FLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY  205 (564)
T ss_dssp             HHHHHHHHHHHHHT----TTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHH----HhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999776555432    2210      0      00111223333344667889999999999874
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
d2b7ma1551 Exocyst complex component EXO70 {Baker's yeast (Sa 95.31
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO70
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=2.2  Score=45.78  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             CCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcC
Q 005012          198 SPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASS-QVQAAIRSSG  272 (719)
Q Consensus       198 sp~~~V~~~~F~~~L~~LD~ci~Fl~~h----p~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~-~V~~~l~~~~  272 (719)
                      +|. .|+-+.|...|.++++.++||+.|    +++++....+..++.++.+|+.-+..+|.+.|+.... +...-+.+  
T Consensus        19 g~~-~~~L~~Yl~al~rl~~al~~l~~~~~~~~~~~~~~gil~~l~~L~~~g~~~Le~~F~~lL~~~~p~~p~~~~~k--   95 (551)
T d2b7ma1          19 GIN-QVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITK--   95 (551)
T ss_dssp             CGG-GSTHHHHHHHHHHHHHHHHTTTSTTTSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCTHHHHHT--
T ss_pred             Ccc-cccHHHHHHHHHHHHHHHHHHHhcCcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhcc--
Confidence            444 677889999999999999999864    4677888889999999999999999999988853110 00000100  


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc-----
Q 005012          273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK-----  347 (719)
Q Consensus       273 ~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~-----  347 (719)
                              ...+..+.   ....+.++.+...+.....       ..+|.+.|...|...+.-.++. |....+.     
T Consensus        96 --------~~~~p~~~---~~~~~~L~~Ia~~l~~~~~-------~~~~~~iY~~~R~~~l~~sL~~-L~~~~~s~~~~~  156 (551)
T d2b7ma1          96 --------KMPFPYYE---DQQLGALSWILDYFHGNSE-------GSIIQDILVGERSKLILKCMAF-LEPFAKEISTAK  156 (551)
T ss_dssp             --------CCCCCCCC---HHHHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHHHHHTT-TGGGGCC-----
T ss_pred             --------CCCCCCCC---HHHHHHHHHHHHHHHhCCC-------CcHHHHHHHHHHHHHHHHHHHH-hhhhhcchhhhc
Confidence                    00011111   1233455555555544321       3568999999998877665442 2221111     


Q ss_pred             ----CCchhhHHhHHHHHHHHHHHHHHhhchhCCCC
Q 005012          348 ----ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS  379 (719)
Q Consensus       348 ----~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~  379 (719)
                          +....-+..-..=|..+.+.|+.|-.+.|+..
T Consensus       157 ~~~y~~~~~~i~~~~~av~~l~~~E~~l~~~if~~~  192 (551)
T d2b7ma1         157 NAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY  192 (551)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                01112223333345666789999999999864