Citrus Sinensis ID: 005034
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 718 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | no | no | 0.740 | 0.686 | 0.336 | 2e-73 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.777 | 0.737 | 0.333 | 4e-73 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.720 | 0.707 | 0.317 | 1e-59 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.731 | 0.700 | 0.312 | 7e-56 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.637 | 0.568 | 0.251 | 2e-19 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.318 | 0.120 | 0.282 | 3e-07 | |
| P72186 | 1398 | Pyrolysin OS=Pyrococcus f | no | no | 0.150 | 0.077 | 0.35 | 5e-07 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.320 | 0.117 | 0.272 | 1e-06 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.320 | 0.120 | 0.272 | 1e-06 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.381 | 0.144 | 0.256 | 2e-06 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 207/616 (33%), Positives = 315/616 (51%), Gaps = 84/616 (13%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLP----QGAW 176
LYSY I GF+ +T +AE L EV V D ++ TT++ +FLGL G W
Sbjct: 72 LYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVW 131
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236
+ G+G +IG +DTG+ P PSF DD S +P + GIC+ F S SCN
Sbjct: 132 SKS----RFGQGTIIGVLDTGVWPESPSF-DDTGMPS--IPRKWKGICQEGESFSSSSCN 184
Query: 237 RKLIGARHFAASAITRG--IFNSSQD-------YASPFDGDGHGSHTASVAAGNHGIPVV 287
RKLIGAR F RG + NS ++ Y S D GHG+HTAS G+
Sbjct: 185 RKLIGARFF-----IRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMAN 239
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347
V G+ G A GMAP +HIAVYK + + G +++D++AAID A QD VD++SLS+ P
Sbjct: 240 VLGNGAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGGFPIP 298
Query: 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407
+ + I + A + GI V+ AAGN GP S+++ +PW+ T+GA + DR +
Sbjct: 299 ----LYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAV 354
Query: 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFN------Q 461
+ L N + G L PG + N + +YV S F +
Sbjct: 355 VRLANGKLLYGESLYPG-----------KGIKNAGREVEVIYVTGGDKGSEFCLRGSLPR 403
Query: 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPG 521
+ ++G ++IC R V G S +A + A G+ + I + + + +
Sbjct: 404 EEIRGKMVICD---RGVNGRSEKGEAVK-----EAGGVAMILANTEINQEEDSIDVHLLP 455
Query: 522 IIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581
+ +S +L Y N++++ K I FG ++G + AP++ +SARG
Sbjct: 456 ATLIGYTESVLLKAYVNATVK----PKARIIFGGT--VIG------RSRAPEVAQFSARG 503
Query: 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAW-SSLGTDSVEFQGE--SFAMMSGTSMAAPHI 638
P L + I+KP+++APG +I AAW +LG + + +F +MSGTSM+ PH+
Sbjct: 504 PS-----LANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHV 558
Query: 639 AGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGS 698
+G+ ALI+ +P++SP+AI SAL T+A LYD+ G I + PA F +G+
Sbjct: 559 SGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI---------KDGNKPAGVFAIGA 609
Query: 699 GFVNATASLDPGLVFD 714
G VN +++PGLV++
Sbjct: 610 GHVNPQKAINPGLVYN 625
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 208/624 (33%), Positives = 331/624 (53%), Gaps = 66/624 (10%)
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
S +DS LR + L Y+Y I+GFS +T ++A+ L + V +V+ +
Sbjct: 49 SNWYDSSLRSISDSAELL--YTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106
Query: 162 TTHTPQFLGLPQGA---WIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPS 218
TT TP FLGL + + + G Y VV+G +DTG+ P S++D E P+PS
Sbjct: 107 TTRTPLFLGLDEHTADLFPEAGSYSD----VVVGVLDTGVWPESKSYSD---EGFGPIPS 159
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAAS-AITRGIFNSSQDYASPFDGDGHGSHTASV 277
+ G CE +F + CNRKLIGAR FA T G + S++ SP D DGHG+HT+S
Sbjct: 160 SWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSST 219
Query: 278 AAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDII 337
AAG+ + G+ G A GMAPR+ +AVYK + G F++D++AAID+A D V+++
Sbjct: 220 AAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVL 278
Query: 338 SLSITPNRRPPGIATFF-NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
S+S+ G++ ++ + + + +A + GI V +AGN GPS S+S+ +PWI TVG
Sbjct: 279 SMSLGG-----GMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVG 333
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDS 456
A + DR + ILGN +GV L G L+ ++A N + T ++ C +
Sbjct: 334 AGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNL----CM-T 388
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
+ V+G +++C G++ Q + K G++ + G +L
Sbjct: 389 GTLIPEKVKGKIVMCDR------GINARVQKGDVVKAAGGVGMIL-ANTAANGEELVADA 441
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+P + + + ++++Y ++ T I G V G+K +P +
Sbjct: 442 HLLPATTV--GEKAGDIIRHYVTT--DPNPTASISILGTVV----GVKP-----SPVVAA 488
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW------SSLGTDSVEFQGESFAMMSG 630
+S+RGP+ +I+KP+L+APG +I AAW + L +DS + F ++SG
Sbjct: 489 FSSRGPNSI-----TPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE---FNIISG 540
Query: 631 TSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSP 690
TSM+ PH++GLAAL+K P +SP+AI SAL T+A K+G P++ A K P
Sbjct: 541 TSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLL-DIATGK------P 593
Query: 691 ATPFDMGSGFVNATASLDPGLVFD 714
+TPFD G+G V+ T + +PGL++D
Sbjct: 594 STPFDHGAGHVSPTTATNPGLIYD 617
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 286/607 (47%), Gaps = 90/607 (14%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEG 180
L++Y NGF+V +T ++AEK++ V +V + TT + FLG P +
Sbjct: 70 LHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFP----LTVP 125
Query: 181 GYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLI 240
+V+G +DTGI P PSF D E P P + G CE + +F CNRK+I
Sbjct: 126 RRSQVESNIVVGVLDTGIWPESPSFDD---EGFSPPPPKWKGTCETSNNF---RCNRKII 179
Query: 241 GARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMA 300
GAR + I R I S D P D +GHG+HTAS AAG + G G A G
Sbjct: 180 GARSYH---IGRPI--SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGV 234
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT-PNRRPPGIATFFNPIDM 359
P + IA YK + G D++AA D A DGVDIISLS+ N R F + I +
Sbjct: 235 PLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPR----HYFVDAIAI 289
Query: 360 ALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419
A + GI +AGN GP+ + +S SPW+ +V A++ DR + + +GN + GV
Sbjct: 290 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGV 349
Query: 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVL 479
+ ++ Y L+S N + + C D S N +L++G +++C S
Sbjct: 350 SINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VNPNLLKGKIVVCEASF---- 401
Query: 480 GLSTIKQAFETAKNLS-AAGIVF------YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKI 532
E K+L AAG++ Y D + P P + P+D
Sbjct: 402 ------GPHEFFKSLDGAAGVLMTSNTRDYADSY-------PLPSS-----VLDPNDLLA 443
Query: 533 LLQY-YNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDD 591
L+Y Y+ + K A SAP ++ +S+RGP+
Sbjct: 444 TLRYIYSIRSPGATIFKSTTILNA--------------SAPVVVSFSSRGPNRATK---- 485
Query: 592 ADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651
D++KP++ PG I AAW S+ + F ++SGTSM+ PHI G+A +K P+
Sbjct: 486 -DVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPT 544
Query: 652 FSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGL 711
+SP+AI SAL T+A+ P+ A+ +P F GSG VN ++ PGL
Sbjct: 545 WSPAAIKSALMTTAS-------PMNARF---------NPQAEFAYGSGHVNPLKAVRPGL 588
Query: 712 VFDASKS 718
V+DA++S
Sbjct: 589 VYDANES 595
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 189/605 (31%), Positives = 289/605 (47%), Gaps = 80/605 (13%)
Query: 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAW 176
K K+YSY N F+ ++P +A+K+ EV +V + + TT + F+GLP
Sbjct: 71 KERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLP---- 126
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSY-PVPSHFSGICEVTRDFPSGSC 235
+ + A V+IG +DTGI P SF D H P P+ + G C ++F C
Sbjct: 127 LTAKRHLKAERDVIIGVLDTGITPDSESFLD----HGLGPPPAKWKGSCGPYKNFTG--C 180
Query: 236 NRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGN 295
N K+IGA++F + + SP D DGHG+HT+S AG + G G
Sbjct: 181 NNKIIGAKYFKHDGNV-----PAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGT 235
Query: 296 ASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFF- 354
A G P + +A+YK + G D++A + A DGV+IIS+SI A +
Sbjct: 236 ARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPI-----ADYSS 290
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414
+ I + A + GI V +AGN GPS ++++ PWI TV A+ DR + + I LGN
Sbjct: 291 DSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGK 350
Query: 415 TISGVGLAPGTDKM--YTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472
+ SG+G++ + K Y L+S + A N TDD Y+ S + ++ V+G +++C
Sbjct: 351 SFSGMGISMFSPKAKSYPLVSGVDAAKN----TDDKYLARYCFSDSLDRKKVKGKVMVCR 406
Query: 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKI 532
+G ++ T K+ AG + D ++ Q+ P + S D I
Sbjct: 407 ------MGGGGVES---TIKSYGGAGAIIVSDQYLDNAQIFMAPATS---VNSSVGD--I 452
Query: 533 LLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDA 592
+ +Y NS+ V +K + AP + +S+RGP+P L
Sbjct: 453 IYRYINSTRSASAVIQKT--------------RQVTIPAPFVASFSSRGPNPGSIRL--- 495
Query: 593 DIMKPNLVAPGNSIWAAWS---SLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF 649
+KP++ APG I AA++ SL + Q F ++SGTSMA PH+AG+AA +K
Sbjct: 496 --LKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFH 553
Query: 650 PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709
P ++P+AI SA+ TSA PI R K E F G G +N + P
Sbjct: 554 PDWTPAAIKSAIITSAK-------PI--SRRVNKDAE-------FAYGGGQINPRRAASP 597
Query: 710 GLVFD 714
GLV+D
Sbjct: 598 GLVYD 602
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 241/588 (40%), Gaps = 130/588 (22%)
Query: 111 RAFKGEKYLKL-YSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTH----- 164
+A K K K+ Y + +GFS+ + + KL ++V V + + +T
Sbjct: 92 KAIKAVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVT 151
Query: 165 ------TPQ------FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEH 212
+PQ ++G AW + GY G+G+ + IDTG++ HP + +
Sbjct: 152 ISEDAVSPQMDDSAPYIG-ANDAW--DLGY--TGKGIKVAIIDTGVEYNHPDLKKNFGQ- 205
Query: 213 SYPVPSHFSGICEVTRDF-----PSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267
+ G V D+ P+G RG +
Sbjct: 206 -------YKGYDFVDNDYDPKETPTGDP----------------RG------------EA 230
Query: 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327
HG+H A A N G G+AP + + Y+ L G +V+A ++
Sbjct: 231 TDHGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVE 278
Query: 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
+A QDG D+++LS+ + P AT AL A G+ V + GN+GP+ ++ S
Sbjct: 279 RAVQDGADVMNLSLGNSLNNPDWAT-----STALDWAMSEGVVAVTSNGNSGPNGWTVGS 333
Query: 388 --FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
S +VGA + + ++ G+ + +G Y + ALNN
Sbjct: 334 PGTSREAISVGA-TQLPLNEYAVTFGSYSSAKVMG--------YNKEDDVKALNNKEVEL 384
Query: 446 DDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505
+ +GE +D +DL ++ SI FV + AK A G+V Y +
Sbjct: 385 VEAGIGEAKDFEG--KDLTGKVAVVKRGSIAFV-------DKADNAKKAGAIGMVVYNN- 434
Query: 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA 565
+ N M +P I + D K++ S+L+ E TK K V+ LG A
Sbjct: 435 LSGEIEANVPGMSVPTIKLSLEDGEKLV-----SALKAGE-TKTTFKL-TVSKALGEQVA 487
Query: 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESF 625
+FS +RGP + D ++KP++ APG +I + + D +
Sbjct: 488 DFS----------SRGP------VMDTWMIKPDISAPGVNIVSTIPTHDPD----HPYGY 527
Query: 626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA-LSTSATLYDKNG 672
GTSMA+PHIAG A+IKQ P +S I +A ++T+ TL D +G
Sbjct: 528 GSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDG 575
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 40/269 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDASEH--SYPVPSHFSGICEVTRDFPSGSCN 236
Y+ GEG V+ IDTGIDPTH +DD Y V F+ + R F S
Sbjct: 203 NYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDV-EKFTDTAKHGRYFTS---- 257
Query: 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHH-FGN 295
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 -KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPTKS 301
Query: 296 ASGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIAT 352
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 302 VVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQT 358
Query: 353 FFNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 359 LEDPEIAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P72186|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pls PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 32/140 (22%)
Query: 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632
+I ++S+RGP D +I KPN+VAPG I+ SSL + G F MSGTS
Sbjct: 546 RIAFFSSRGPRI------DGEI-KPNVVAPGYGIY---SSL---PMWIGGADF--MSGTS 590
Query: 633 MAAPHIAGLAALI----KQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQ 688
MA PH++G+ AL+ K + ++P I L + AT + G P Q+
Sbjct: 591 MATPHVSGVVALLISGAKAEGIYYNPDIIKKVLESGATWLE--GDPYTGQK--------- 639
Query: 689 SPATPFDMGSGFVNATASLD 708
T D G G VN T S +
Sbjct: 640 --YTELDQGHGLVNVTKSWE 657
|
Has endopeptidase activity toward caseins, casein fragments including alpha-S1-casein and synthetic peptides. Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA- 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHH-FGNA 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 141/327 (43%), Gaps = 53/327 (16%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHH-FGNA 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S ++ +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIF------TVGAASHDRIYT-- 405
+P A+ +A ++G V +AGN+G S + + + VG R T
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTV 419
Query: 406 ----NSIILGNSLTI---SGVGLAPGT 425
N+ ++ ++TI +G+ L PGT
Sbjct: 420 ASAENTDVITQAVTITDGTGLQLGPGT 446
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 718 | ||||||
| 296089234 | 842 | unnamed protein product [Vitis vinifera] | 0.970 | 0.827 | 0.807 | 0.0 | |
| 224115250 | 837 | predicted protein [Populus trichocarpa] | 0.962 | 0.825 | 0.818 | 0.0 | |
| 224117852 | 824 | predicted protein [Populus trichocarpa] | 0.934 | 0.814 | 0.820 | 0.0 | |
| 359483988 | 818 | PREDICTED: subtilisin-like protease [Vit | 0.937 | 0.822 | 0.776 | 0.0 | |
| 449434210 | 859 | PREDICTED: subtilisin-like protease SDD1 | 0.935 | 0.782 | 0.787 | 0.0 | |
| 449490755 | 842 | PREDICTED: LOW QUALITY PROTEIN: subtilis | 0.933 | 0.795 | 0.786 | 0.0 | |
| 297799994 | 857 | subtilase family protein [Arabidopsis ly | 0.983 | 0.823 | 0.721 | 0.0 | |
| 18415500 | 856 | Subtilase family protein [Arabidopsis th | 0.974 | 0.817 | 0.723 | 0.0 | |
| 356511041 | 824 | PREDICTED: subtilisin-like protease-like | 0.938 | 0.817 | 0.771 | 0.0 | |
| 356530513 | 825 | PREDICTED: subtilisin-like protease SDD1 | 0.922 | 0.802 | 0.748 | 0.0 |
| >gi|296089234|emb|CBI39006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/716 (80%), Positives = 635/716 (88%), Gaps = 19/716 (2%)
Query: 6 RSCRWLRLFVVVLLLGFL--VCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELR 63
S W+ L VV+ L F+ VC QD + DE+TAVYIVTLKQ P+ H + ELR
Sbjct: 2 ESVYWVHLMVVLCLGTFMGIVC------QDGA---DEVTAVYIVTLKQTPTSHYYG-ELR 51
Query: 64 RGNKNHGFHKQNGTSGRLSRLNNPR-NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLY 122
+G ++G G+L RL+ PR N+S S P ISRVHDS+LRRA +GE+YLKLY
Sbjct: 52 KGTNVF----RHGVPGKLDRLHTPRRNISRSDPHYNSYISRVHDSLLRRALRGEQYLKLY 107
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGY 182
SYHYLINGF+VFVT QQAEKL++RREVANVV DFSVRTATTHTPQFLGLPQGAW+QEGGY
Sbjct: 108 SYHYLINGFAVFVTSQQAEKLAKRREVANVVLDFSVRTATTHTPQFLGLPQGAWVQEGGY 167
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
++AGEG+VIGFIDTGIDPTHPSFA D SE +YPVP+HFSGICEVT DFPSGSCNRKL+GA
Sbjct: 168 DSAGEGIVIGFIDTGIDPTHPSFAVDRSEVAYPVPAHFSGICEVTPDFPSGSCNRKLVGA 227
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
RHFAASAITRGIFN+SQDYASPFDGDGHG+HTAS+AAGNHGIPVVV GHHFGNASGMAPR
Sbjct: 228 RHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVVVAGHHFGNASGMAPR 287
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPGIATFFNPIDMALL
Sbjct: 288 AHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIVSLSITPNRRPPGIATFFNPIDMALL 347
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLA 422
SA KAGIFVVQAAGNTGPSPKS+SSFSPWIFTVGAA+HDR Y+NSI+LGN++TI GVGLA
Sbjct: 348 SAVKAGIFVVQAAGNTGPSPKSVSSFSPWIFTVGAAAHDRAYSNSIVLGNNVTIPGVGLA 407
Query: 423 PGTD--KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLG 480
PGT +MYTL+SALHALNN+TT +DMYVGECQDSS+ QDLVQGNLLICSYSIRFVLG
Sbjct: 408 PGTHRGRMYTLVSALHALNNDTTIANDMYVGECQDSSSLKQDLVQGNLLICSYSIRFVLG 467
Query: 481 LSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540
LSTIKQA +TAKNLSAAG+VFYMDPFVIGFQLNP PMKMPGIII SPDDSKI LQYYN S
Sbjct: 468 LSTIKQALQTAKNLSAAGVVFYMDPFVIGFQLNPIPMKMPGIIISSPDDSKIFLQYYNHS 527
Query: 541 LERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV 600
LER TK+I+KFGA A I GGLK N+SNSAPK+MYYSARGPDPEDSFLDDADIMKPNLV
Sbjct: 528 LERQGSTKEIVKFGAAASISGGLKPNYSNSAPKVMYYSARGPDPEDSFLDDADIMKPNLV 587
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APGN IWAAWSSLGTDSVEF GE+FAMMSGTSMAAPH++GLAALIKQKFP FSPSAI SA
Sbjct: 588 APGNFIWAAWSSLGTDSVEFLGENFAMMSGTSMAAPHVSGLAALIKQKFPKFSPSAIGSA 647
Query: 661 LSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
LST+A+LY++NGGPIMAQRAYA PD NQSPATPFDMGSGFVNATA+LDPGL+FDAS
Sbjct: 648 LSTTASLYNRNGGPIMAQRAYANPDLNQSPATPFDMGSGFVNATAALDPGLIFDAS 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115250|ref|XP_002332198.1| predicted protein [Populus trichocarpa] gi|222875305|gb|EEF12436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/705 (81%), Positives = 630/705 (89%), Gaps = 14/705 (1%)
Query: 16 VVLLLGFLVCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNK--NHGFHK 73
+VL LG L T C+ D SE + TAVYIVTLKQAP+ H + ELR+ HG +
Sbjct: 1 MVLSLGVLAGT-LCQVDDGSE--NGTTAVYIVTLKQAPASHYYG-ELRKNTNVFKHGVPR 56
Query: 74 QNGTSGRLSRLNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSV 133
S +NPRN S S+ S I+RVHDS+LRR +GEKYLKLYSYHYLINGF+V
Sbjct: 57 NPKQS------HNPRNDSRSNQSSSSYIARVHDSLLRRVLRGEKYLKLYSYHYLINGFAV 110
Query: 134 FVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGF 193
VTP+QA KLSRR+EVANV DFSVRTATTHTPQFLGLPQGAW + GGYETAGEG+VIGF
Sbjct: 111 LVTPEQANKLSRRKEVANVALDFSVRTATTHTPQFLGLPQGAWPKAGGYETAGEGIVIGF 170
Query: 194 IDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 253
IDTGIDP+HPSF+DD+S +SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG
Sbjct: 171 IDTGIDPSHPSFSDDSSLNSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 230
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK 313
IFNSSQDYASPFDGDGHG+HTASVAAGNHGIPV+V HHFGNASGMAPR+H+AVYKALYK
Sbjct: 231 IFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVIVARHHFGNASGMAPRAHVAVYKALYK 290
Query: 314 SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQ 373
SFGGFAADVVAAIDQAAQDGVD++SLSITPNRRPPGIATFFNPIDMALLSA KAGIF VQ
Sbjct: 291 SFGGFAADVVAAIDQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFAVQ 350
Query: 374 AAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK--MYTL 431
AAGNTGPSPKSMSSFSPWIFTVGAASHDR Y+NSIILGN++TI GVGLAPGT K M TL
Sbjct: 351 AAGNTGPSPKSMSSFSPWIFTVGAASHDRAYSNSIILGNNVTIHGVGLAPGTHKNTMLTL 410
Query: 432 ISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491
ISALHALNN TT DMYVGECQDSSNFNQDLV+GNLLICSYSIRFVLGLSTIKQA TA
Sbjct: 411 ISALHALNNETTVATDMYVGECQDSSNFNQDLVKGNLLICSYSIRFVLGLSTIKQAIATA 470
Query: 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII 551
KNLSAAG+VFYMDPFVIGFQLNP PM++PGIIIPSPDDSK+LLQYYNSSLER+E TKKI
Sbjct: 471 KNLSAAGVVFYMDPFVIGFQLNPIPMRVPGIIIPSPDDSKVLLQYYNSSLERNETTKKIT 530
Query: 552 KFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWS 611
+FG+VA ILGGLKAN+SNSAPK+M+YSARGPDPED+FLDDADI+KPNL+APGN IWAAWS
Sbjct: 531 RFGSVASILGGLKANYSNSAPKVMFYSARGPDPEDNFLDDADILKPNLIAPGNLIWAAWS 590
Query: 612 SLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKN 671
SLGTDSVEFQGE+FA+MSGTSMAAPHIAGLAALIKQKFPSFSP+AIASALST+A+LYD N
Sbjct: 591 SLGTDSVEFQGENFALMSGTSMAAPHIAGLAALIKQKFPSFSPAAIASALSTTASLYDNN 650
Query: 672 GGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
GGPIMAQRAY+ PD NQSPATPFDMGSGFVNATA+LDPGL+FD+S
Sbjct: 651 GGPIMAQRAYSNPDLNQSPATPFDMGSGFVNATAALDPGLIFDSS 695
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117852|ref|XP_002317684.1| predicted protein [Populus trichocarpa] gi|222860749|gb|EEE98296.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/692 (82%), Positives = 621/692 (89%), Gaps = 21/692 (3%)
Query: 29 CRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNK-NHGFHKQNGTSGRLSRLNNP 87
C+ D S D+E TAVYIVTLKQAP+ H + + + N HG P
Sbjct: 16 CQVDDGS--DNETTAVYIVTLKQAPASHYYGKLRKNTNVFKHGV---------------P 58
Query: 88 RNVSISHPRSGYN-ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRR 146
RN + H RS + ++RVHDS+LRR +GEKYLKLYSYHYLINGF+V VTP+QA KLSRR
Sbjct: 59 RNPNQFHNRSSSSYVARVHDSLLRRVLRGEKYLKLYSYHYLINGFAVLVTPEQAFKLSRR 118
Query: 147 REVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFA 206
REVANV DFSVRTATTHTPQFLGLPQGAW++ GGYETAGEG+VIGF+DTGIDPTHPSFA
Sbjct: 119 REVANVALDFSVRTATTHTPQFLGLPQGAWVKAGGYETAGEGIVIGFVDTGIDPTHPSFA 178
Query: 207 DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266
DD S +SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSS DYASPFD
Sbjct: 179 DDISLNSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSLDYASPFD 238
Query: 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326
GDGHG+HTASVAAGNHGIPV+V GH FGNASGMAPR+H++VYKALYKSFGGFAADVVAAI
Sbjct: 239 GDGHGTHTASVAAGNHGIPVIVAGHCFGNASGMAPRAHVSVYKALYKSFGGFAADVVAAI 298
Query: 327 DQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS 386
DQAAQDGVD++SLSITPNRRPPGIATFFNPIDMALLSA KAGIF+VQAAGNTGPSPKSMS
Sbjct: 299 DQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFIVQAAGNTGPSPKSMS 358
Query: 387 SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK--MYTLISALHALNNNTTT 444
SFSPWIFTVGAASHDR+Y+NSIILGN++TI GVGLAPGTD+ M TL+SALHA+NN TT
Sbjct: 359 SFSPWIFTVGAASHDRVYSNSIILGNNVTIHGVGLAPGTDEDTMLTLVSALHAVNNETTV 418
Query: 445 TDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504
T DMYVGECQDSS FNQD ++GNLLICSYSIRFVLGLSTIKQA ETAKNLSAAG+VFYMD
Sbjct: 419 TTDMYVGECQDSSTFNQDFIEGNLLICSYSIRFVLGLSTIKQAVETAKNLSAAGVVFYMD 478
Query: 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564
PFVIG+QLNP PM +PGIIIPSPDDSK+LLQYYNSSLER+ TK+I KFGAVA ILGGLK
Sbjct: 479 PFVIGYQLNPIPMSVPGIIIPSPDDSKVLLQYYNSSLERNGTTKQITKFGAVASILGGLK 538
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
AN+SNSAPK++YYSARGPDPEDSFLDDADI+KPNLVAPGNSIWAAWSSLGTDSVEFQGE+
Sbjct: 539 ANYSNSAPKVVYYSARGPDPEDSFLDDADILKPNLVAPGNSIWAAWSSLGTDSVEFQGEN 598
Query: 625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKP 684
FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALS++A+LYD NGGPIMAQRAYA P
Sbjct: 599 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSSTASLYDNNGGPIMAQRAYANP 658
Query: 685 DENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
D NQSPATPFDMGSGFVNATA+LDPGL+FD+S
Sbjct: 659 DLNQSPATPFDMGSGFVNATAALDPGLIFDSS 690
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483988|ref|XP_002271023.2| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/716 (77%), Positives = 613/716 (85%), Gaps = 43/716 (6%)
Query: 6 RSCRWLRLFVVVLLLGFL--VCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELR 63
S W+ L VV+ L F+ VC QD + DE+TAVYIVTLKQ P+ H + ELR
Sbjct: 2 ESVYWVHLMVVLCLGTFMGIVC------QDGA---DEVTAVYIVTLKQTPTSHYYG-ELR 51
Query: 64 RGNKNHGFHKQNGTSGRLSRLNNPR-NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLY 122
+G ++G G+L RL+ PR N+S S P ISRVHDS+LRRA +GE+YLKLY
Sbjct: 52 KGTNVF----RHGVPGKLDRLHTPRRNISRSDPHYNSYISRVHDSLLRRALRGEQYLKLY 107
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGY 182
SYHYLINGF+VFVT QQAEKL++RREVANVV DFSVRTATTHTPQFLGLPQGAW+QEGGY
Sbjct: 108 SYHYLINGFAVFVTSQQAEKLAKRREVANVVLDFSVRTATTHTPQFLGLPQGAWVQEGGY 167
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
++AGEG+VIGFIDTGIDPTHPSFA D SE +YPVP+HFSGICEVT DFPSGSCNRKL+GA
Sbjct: 168 DSAGEGIVIGFIDTGIDPTHPSFAVDRSEVAYPVPAHFSGICEVTPDFPSGSCNRKLVGA 227
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
RHFAASAITRGIFN+SQDYASPFDGDGHG+HTAS+AAGNHGIPVVV GHHFGNASGMAPR
Sbjct: 228 RHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVVVAGHHFGNASGMAPR 287
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPGIATFFNPIDMALL
Sbjct: 288 AHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIVSLSITPNRRPPGIATFFNPIDMALL 347
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLA 422
SA KAGIFVVQAAGNTGPSPKS+SSFSPWIFTVGAA+HDR Y+NSI+LGN++TI GVGLA
Sbjct: 348 SAVKAGIFVVQAAGNTGPSPKSVSSFSPWIFTVGAAAHDRAYSNSIVLGNNVTIPGVGLA 407
Query: 423 PGTD--KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLG 480
PGT +MYTL+SALHALNN+TT +D+ YSIRFVLG
Sbjct: 408 PGTHRGRMYTLVSALHALNNDTTIANDI------------------------YSIRFVLG 443
Query: 481 LSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540
LSTIKQA +TAKNLSAAG+VFYMDPFVIGFQLNP PMKMPGIII SPDDSKI LQYYN S
Sbjct: 444 LSTIKQALQTAKNLSAAGVVFYMDPFVIGFQLNPIPMKMPGIIISSPDDSKIFLQYYNHS 503
Query: 541 LERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV 600
LER TK+I+KFGA A I GGLK N+SNSAPK+MYYSARGPDPEDSFLDDADIMKPNLV
Sbjct: 504 LERQGSTKEIVKFGAAASISGGLKPNYSNSAPKVMYYSARGPDPEDSFLDDADIMKPNLV 563
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APGN IWAAWSSLGTDSVEF GE+FAMMSGTSMAAPH++GLAALIKQKFP FSPSAI SA
Sbjct: 564 APGNFIWAAWSSLGTDSVEFLGENFAMMSGTSMAAPHVSGLAALIKQKFPKFSPSAIGSA 623
Query: 661 LSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
LST+A+LY++NGGPIMAQRAYA PD NQSPATPFDMGSGFVNATA+LDPGL+FDAS
Sbjct: 624 LSTTASLYNRNGGPIMAQRAYANPDLNQSPATPFDMGSGFVNATAALDPGLIFDAS 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434210|ref|XP_004134889.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/679 (78%), Positives = 609/679 (89%), Gaps = 7/679 (1%)
Query: 42 TAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNI 101
TAVYIVTLK+ PS + +LR+ + F G S +R RN+S H R I
Sbjct: 32 TAVYIVTLKEPPSTTHYYGQLRQNTTS--FSTSGGLSIHKARY---RNISRKHRRYRSYI 86
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
+RVHDS+L++ +GEKYLKLYSYH+LINGF+V VT +QA KLS+R+EVANVV DFSVRTA
Sbjct: 87 ARVHDSLLKKVLRGEKYLKLYSYHFLINGFAVLVTEEQANKLSKRKEVANVVMDFSVRTA 146
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHTPQFLGLPQGAW Q+GG+E+AG G+VIGFIDTGIDP+HPSFADD +++ +P+P+HFS
Sbjct: 147 TTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFS 206
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GICEVT DFPSGSCNRKL+GARHFAASAITRGIFN++QDYASPFDGDGHG+HTAS+AAGN
Sbjct: 207 GICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNATQDYASPFDGDGHGTHTASIAAGN 266
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
HGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAA+DQAAQDGVDIISLSI
Sbjct: 267 HGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSI 326
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
TPNRRPPGIATFFNPIDMALLSA K GIFVVQAAGNTGP+PKSMSSFSPWIFTVGAASHD
Sbjct: 327 TPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHD 386
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R Y NSI LGN++TI GVGLAPGT D Y LI+A+HALNN+T+ ++DMYVGECQDSSNF
Sbjct: 387 RSYANSISLGNNITIPGVGLAPGTYNDTKYKLIAAIHALNNDTSVSEDMYVGECQDSSNF 446
Query: 460 NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
+Q+L++GNLLICSYSIRFVLGLST+KQA +TAKNLSAAG++FYMD FVIGF+LNP PMKM
Sbjct: 447 DQNLIEGNLLICSYSIRFVLGLSTVKQALQTAKNLSAAGVIFYMDSFVIGFRLNPIPMKM 506
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
PGII+ SP+DSK+LLQYYNSSLE D +TKKI KFGAVA I GGLKAN+S+SAP+IMYYSA
Sbjct: 507 PGIIVSSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSA 566
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639
RGPDPEDS LDD+DIMKPNLVAPGN IWAAWSS+ TDS+EF GE+FAMMSGTSMAAPHIA
Sbjct: 567 RGPDPEDSSLDDSDIMKPNLVAPGNFIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIA 626
Query: 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699
GLA+LIKQK+PSFSPSAIASALST+A+LYDK GGPIMAQRAYA P++NQSPATPFDMGSG
Sbjct: 627 GLASLIKQKYPSFSPSAIASALSTTASLYDKTGGPIMAQRAYANPEQNQSPATPFDMGSG 686
Query: 700 FVNATASLDPGLVFDASKS 718
FVNATA+L+PGL+FD+S S
Sbjct: 687 FVNATAALNPGLIFDSSYS 705
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490755|ref|XP_004158698.1| PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/679 (78%), Positives = 610/679 (89%), Gaps = 9/679 (1%)
Query: 42 TAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNI 101
TAVYIVTLK+ PS + +LR+ + TSG LS ++ RN+S H R I
Sbjct: 32 TAVYIVTLKEPPSTTHYYGQLRQNTTSFS------TSGGLS-IHKARNISRKHRRYRSYI 84
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
+RVHDS+L++ +GEKYLKLYSYH+LINGF+V VT +QA KLS+R+EVANVV DFSVRTA
Sbjct: 85 ARVHDSLLKKVLRGEKYLKLYSYHFLINGFAVLVTEEQANKLSKRKEVANVVMDFSVRTA 144
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHTPQFLGLPQGAW Q+GG+E+AG G+VIGFIDTGIDP+HPSFADD +++ +P+P+HFS
Sbjct: 145 TTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFS 204
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GICEVT DFPSGSCNRKL+GARHFAASAITRGIFN++QDYASPFDGDGHG+HTAS+AAGN
Sbjct: 205 GICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNATQDYASPFDGDGHGTHTASIAAGN 264
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
HGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAA+DQAAQDGVDIISLSI
Sbjct: 265 HGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSI 324
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
TPNRRPPGIATFFNPIDMALLSA K GIFVVQAAGNTGP+PKSMSSFSPWIFTVGAASHD
Sbjct: 325 TPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHD 384
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R Y NSI LGN++TI GVGLAPGT D Y LI+A+HALNN+T+ ++DMYVGECQDSSNF
Sbjct: 385 RSYANSISLGNNITIPGVGLAPGTYNDTKYKLIAAIHALNNDTSVSEDMYVGECQDSSNF 444
Query: 460 NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
+Q+L++GNLLICSYSIRFVLGLST+KQA + +KNLSAAG++FYMD FVIGF+LNP PMKM
Sbjct: 445 DQNLIEGNLLICSYSIRFVLGLSTVKQALQXSKNLSAAGVIFYMDSFVIGFRLNPIPMKM 504
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
PGII+ SP+DSK+LLQYYNSSLE D +TKKI KFGAVA I GGLKAN+S+SAP+IMYYSA
Sbjct: 505 PGIIVSSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSA 564
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639
RGPDPEDS LDD+DIMKPNLVAPGN IWAAWSS+ TDS+EF GE+FAMMSGTSMAAPHIA
Sbjct: 565 RGPDPEDSSLDDSDIMKPNLVAPGNFIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIA 624
Query: 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699
GLA+LIKQK+PSFSPSAIASALST+A+LYDK GGPIMAQRAYA P++NQSPATPFDMGSG
Sbjct: 625 GLASLIKQKYPSFSPSAIASALSTTASLYDKTGGPIMAQRAYANPEQNQSPATPFDMGSG 684
Query: 700 FVNATASLDPGLVFDASKS 718
FVNATA+L+PGL+FD+S S
Sbjct: 685 FVNATAALNPGLIFDSSYS 703
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799994|ref|XP_002867881.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313717|gb|EFH44140.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/718 (72%), Positives = 606/718 (84%), Gaps = 12/718 (1%)
Query: 11 LRLFVVVLLLGFLVCTSFCR---AQDDSEPDDEI---TAVYIVTLKQAPSVHRFAQELRR 64
+R+ +V + L C F QD++ D +I TAVYIVTL+QAPS+H F QE
Sbjct: 2 MRVLMVNFGVFLLFCFGFLSNSFGQDNNAGDSDINSTTAVYIVTLRQAPSLHLFQQETEV 61
Query: 65 GNKNHGFHKQNGTSGRLSRLNNPRNVSIS-HPRSGYN-ISRVHDSILRRAFKGEKYLKLY 122
N+ K TS PRN+S S + RS + I++ HDS+LR A KGEKY+KLY
Sbjct: 62 KNRVRDKSKHGDTSKFTRPKLQPRNISKSRYWRSRRSAIAQAHDSLLRNALKGEKYIKLY 121
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGY 182
S+HYLINGF+VFV+ QQAEKLSRR EVAN+V DFSVRTATT+TPQF+GLP+GAW++EGG+
Sbjct: 122 SFHYLINGFAVFVSSQQAEKLSRRGEVANIVLDFSVRTATTYTPQFMGLPKGAWVKEGGF 181
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF-ADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
ETAGEG+VIGFIDTGIDPTHPSF D S+ YP+P+HFSG+CEVT DFPSGSCNRKL+G
Sbjct: 182 ETAGEGIVIGFIDTGIDPTHPSFNGTDTSQRQYPIPNHFSGVCEVTPDFPSGSCNRKLVG 241
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
ARHFA SAITRGIFNSS+DYASPFDGDGHG+HTAS+AAGNHG+ VV+GH+FG+ASG+AP
Sbjct: 242 ARHFAQSAITRGIFNSSEDYASPFDGDGHGTHTASIAAGNHGVSAVVSGHNFGSASGIAP 301
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMAL 361
R+HI+VYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPG+ATFFNP+DMA+
Sbjct: 302 RAHISVYKALYKSFGGFAADVVAAIDQAAQDGVDILSLSITPNRRPPGVATFFNPLDMAM 361
Query: 362 LSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421
LSA KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA+HDR+Y+NSIILGN+++I G+GL
Sbjct: 362 LSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAATHDRVYSNSIILGNNVSIPGIGL 421
Query: 422 APGTD--KMYTLISALHALNNNTTTTD-DMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478
A TD K+YT+ISAL AL N + D DMYVGECQD +F++D+++GNLLICSYSIRFV
Sbjct: 422 ALPTDEGKVYTMISALDALKNKSLVLDKDMYVGECQDYDSFDKDIIRGNLLICSYSIRFV 481
Query: 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYN 538
LGLSTIKQA KNLSA G+VFYMDP+V+GFQ+NPTPM MPGIIIPS +DSK+LL+YYN
Sbjct: 482 LGLSTIKQALAVTKNLSAKGVVFYMDPYVLGFQINPTPMDMPGIIIPSSEDSKVLLKYYN 541
Query: 539 SSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPN 598
SSL RD TK+I++FGAVA I GG ANFSN APKIMYYSARGPDPEDS +DADI+KPN
Sbjct: 542 SSLVRDGTTKEIVRFGAVAAIAGGQNANFSNRAPKIMYYSARGPDPEDSLFNDADILKPN 601
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
LVAPGNSIW AWSS T+S EF+GESFAMMSGTSMAAPH+AG+AAL+KQKF FSPS+IA
Sbjct: 602 LVAPGNSIWGAWSSAATESTEFEGESFAMMSGTSMAAPHVAGVAALVKQKFRKFSPSSIA 661
Query: 659 SALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
SALST++ L+D G IMAQRAYA PD+ SPATPFDMG+GFVNATA+LDPGL+FD S
Sbjct: 662 SALSTTSVLFDNKGEAIMAQRAYANPDQTLSPATPFDMGNGFVNATAALDPGLIFDTS 719
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415500|ref|NP_567601.1| Subtilase family protein [Arabidopsis thaliana] gi|5262166|emb|CAB45809.1| putative serine proteinase [Arabidopsis thaliana] gi|7268839|emb|CAB79043.1| putative serine proteinase [Arabidopsis thaliana] gi|332658928|gb|AEE84328.1| Subtilase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/715 (72%), Positives = 596/715 (83%), Gaps = 15/715 (2%)
Query: 17 VLLLGFLVCTSFCRA-------QDDSEPDD--EITAVYIVTLKQAPSVHRFAQELRRGNK 67
VL++ F V FC QD+ D TAVYIVTL+QA S+H F QE +
Sbjct: 4 VLMVNFGVLLLFCFGVLSNSFGQDNGGDSDINSTTAVYIVTLRQASSLHLFQQEAEEVKR 63
Query: 68 NHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYN--ISRVHDSILRRAFKGEKYLKLYSYH 125
K TS PRN+S S I++ HDS+LR A KGEKY+KLYS+H
Sbjct: 64 VRDQSKHGDTSKFTRPKLQPRNISRSRYWRSRRSAIAQAHDSLLRNALKGEKYIKLYSFH 123
Query: 126 YLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETA 185
YLINGF+VFV+ QQAE LSRRREVAN+V DFSVRTATT+TPQF+GLP+GAW++EGGYETA
Sbjct: 124 YLINGFAVFVSSQQAETLSRRREVANIVLDFSVRTATTYTPQFMGLPKGAWVKEGGYETA 183
Query: 186 GEGVVIGFIDTGIDPTHPSF-ADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARH 244
GEG+VIGFIDTGIDPTHPSF D S+ YP+P+HFSG+CEVT DFPSGSCNRKL+GARH
Sbjct: 184 GEGIVIGFIDTGIDPTHPSFNGTDTSQRQYPIPNHFSGVCEVTPDFPSGSCNRKLVGARH 243
Query: 245 FAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
FA SAITRGIFNSS+DYASPFDGDGHG+HTAS+AAGNHG+ VV+GH+FG+ASG+APR+H
Sbjct: 244 FAQSAITRGIFNSSEDYASPFDGDGHGTHTASIAAGNHGVSAVVSGHNFGSASGIAPRAH 303
Query: 305 IAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSA 364
I+VYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPG+ATFFNP+DMA+LSA
Sbjct: 304 ISVYKALYKSFGGFAADVVAAIDQAAQDGVDILSLSITPNRRPPGVATFFNPLDMAMLSA 363
Query: 365 AKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424
KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDR Y+NSI+LGN+++I GVGLA
Sbjct: 364 VKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRDYSNSIVLGNNVSIPGVGLALR 423
Query: 425 TD--KMYTLISALHALNNNTTTTD-DMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGL 481
TD K YT+ISAL AL N ++ D DMYVGECQD +F++D+++GNLLICSYSIRFVLGL
Sbjct: 424 TDEGKKYTMISALDALKNKSSVVDKDMYVGECQDYGSFDKDVIRGNLLICSYSIRFVLGL 483
Query: 482 STIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSL 541
STIKQA AKNLSA G+VFYMDP+V+GFQ+NPTPM MPGIIIPS +DSK+LL+YYNSSL
Sbjct: 484 STIKQALAVAKNLSAKGVVFYMDPYVLGFQINPTPMDMPGIIIPSAEDSKVLLKYYNSSL 543
Query: 542 ERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA 601
RD TK+I++FGAVA I GG ANFSN APKIMYYSARGPDP+DS +DADI+KPNLVA
Sbjct: 544 VRDGTTKEIVRFGAVAAIAGGQNANFSNRAPKIMYYSARGPDPQDSLFNDADILKPNLVA 603
Query: 602 PGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661
PGNSIW AWSS T+S EF+GESFAMMSGTSMAAPH+AG+AAL+KQKF FSPSAIASAL
Sbjct: 604 PGNSIWGAWSSAATESTEFEGESFAMMSGTSMAAPHVAGVAALVKQKFRKFSPSAIASAL 663
Query: 662 STSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
ST++ L+D G IMAQRAYA PD+ SPATPFDMG+GFVNATA+LDPGL+FD S
Sbjct: 664 STTSVLFDNKGEAIMAQRAYANPDQTISPATPFDMGNGFVNATAALDPGLIFDTS 718
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511041|ref|XP_003524240.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/683 (77%), Positives = 591/683 (86%), Gaps = 9/683 (1%)
Query: 39 DEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRL-SRLNNPRNVSISHP-- 95
D TAVYIVTL+QAP+ H EL N ++G+SGR +R++ R+ ++S P
Sbjct: 11 DSTTAVYIVTLRQAPASHYHHHELITVGNN----SKHGSSGRRRTRVHKQRHQNVSKPVM 66
Query: 96 RSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSD 155
+ G +RVHDS+L + F GEKYLKLYSYHYLINGF+V VT QQAEKLSRRREV+NV D
Sbjct: 67 KRGSYFARVHDSLLNKVFNGEKYLKLYSYHYLINGFAVLVTQQQAEKLSRRREVSNVALD 126
Query: 156 FSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
FSVRTATTHTPQFLGLPQGAW+Q GG+ETAGEG+ IGF+DTGIDPTHPSFADD SEH +P
Sbjct: 127 FSVRTATTHTPQFLGLPQGAWLQAGGFETAGEGIAIGFVDTGIDPTHPSFADDKSEHPFP 186
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
VP+HFSG CEVT DFPSGSCNRKL+GARHFAASAITRGIFNSSQDYASPFDGDGHG+HTA
Sbjct: 187 VPAHFSGACEVTPDFPSGSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTA 246
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335
SVAAGNHGIPV+V G FGNASGMAP SHIA+YKALYK FGGFAADVVAAIDQAAQDGVD
Sbjct: 247 SVAAGNHGIPVIVAGQVFGNASGMAPHSHIAIYKALYKRFGGFAADVVAAIDQAAQDGVD 306
Query: 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 395
II LSITPNRRP GIATFFNPIDMALLSA KAGIFVVQAAGNTGPSP SMSSFSPWIFTV
Sbjct: 307 IICLSITPNRRPSGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPMSMSSFSPWIFTV 366
Query: 396 GAASHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGEC 453
GA SHDR+Y+NS+ LGN++TI GVGLAPGT + M+ LI A HALN NTT TDDMY+GEC
Sbjct: 367 GATSHDRVYSNSLCLGNNVTIPGVGLAPGTYENTMFKLIHARHALNKNTTVTDDMYIGEC 426
Query: 454 QDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN 513
QD+S F+QDLVQGNLLICSYS+RFVLGLSTI+QA ETA NLSA G+VF MD FV FQLN
Sbjct: 427 QDASKFSQDLVQGNLLICSYSVRFVLGLSTIQQALETAMNLSAVGVVFSMDLFVTAFQLN 486
Query: 514 PTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573
P PMKMPGIIIPS +DSKILLQYYNSSL+ D + KI+KFGAVA I GGL+AN++N APK
Sbjct: 487 PVPMKMPGIIIPSANDSKILLQYYNSSLQIDGDSNKIVKFGAVASIGGGLEANYNNEAPK 546
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++YYSARGPDPEDS +ADIMKPNLVAPGN IWAAWSS+ TDSVEF GE+FAMMSGTSM
Sbjct: 547 VVYYSARGPDPEDSLPHEADIMKPNLVAPGNFIWAAWSSVATDSVEFLGENFAMMSGTSM 606
Query: 634 AAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP 693
AAPH+AGLAALIKQ+FP+FSP+AI SALST+A+LYD NG PIMAQR+Y D+N SPATP
Sbjct: 607 AAPHVAGLAALIKQQFPNFSPAAIGSALSTTASLYDNNGRPIMAQRSYPSIDQNLSPATP 666
Query: 694 FDMGSGFVNATASLDPGLVFDAS 716
FDMGSGFVNATA+L+PGL+FD+S
Sbjct: 667 FDMGSGFVNATAALNPGLLFDSS 689
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530513|ref|XP_003533825.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/696 (74%), Positives = 584/696 (83%), Gaps = 34/696 (4%)
Query: 25 CTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRL 84
C C Q DS+ D + VY+VTL+ AP H + LRR + +GF GR ++
Sbjct: 17 CFLPCLCQGDSD-DATTSDVYVVTLRHAPVSHYYGG-LRR--EVNGFKDAAAAPGR-TQF 71
Query: 85 NNPR---NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAE 141
N PR N++ + R G ISRVHDS+L++ GEKYLKLYSYHYLINGF+V VT QQAE
Sbjct: 72 NKPRRYGNITKTDKRYGSYISRVHDSLLKKVLNGEKYLKLYSYHYLINGFAVLVTQQQAE 131
Query: 142 KLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPT 201
KLSR EV+NVV DFSVRTATTHTPQFLGLPQGAW Q+GG+ETAGEGVVIGF+DTGIDPT
Sbjct: 132 KLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQDGGFETAGEGVVIGFVDTGIDPT 191
Query: 202 HPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261
HPSF D+ E YPVP+HFSGICEVTRDFPSGSCNRKL+GARHFAASAITRGIFNS+QDY
Sbjct: 192 HPSFDDNKYEKPYPVPAHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDY 251
Query: 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 321
ASPFDGDGHG+HTASVAAGNHGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAAD
Sbjct: 252 ASPFDGDGHGTHTASVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 311
Query: 322 VVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS 381
VVAAIDQAAQDGVDIISLSITPNRRPPG+ATFFNPIDMALLSA K GIFVVQAAGNTGPS
Sbjct: 312 VVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKQGIFVVQAAGNTGPS 371
Query: 382 PKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALN 439
P SM SFSPWI+TVGAASHDR+Y+NSI LGN++TI GVGLAPGTD K+Y LI A HAL+
Sbjct: 372 PTSMFSFSPWIYTVGAASHDRVYSNSIFLGNNVTIPGVGLAPGTDESKLYKLIHAHHALS 431
Query: 440 NNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499
N+TT DD+ YSIRFVLGLSTIK+A ETAKNLSAAG+
Sbjct: 432 NDTTVADDI------------------------YSIRFVLGLSTIKRASETAKNLSAAGV 467
Query: 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACI 559
VFYMDPFVIGFQLNP PMKMPGIII S +DSK+L QYYNSSLE D V+KKI+KFGAVA I
Sbjct: 468 VFYMDPFVIGFQLNPVPMKMPGIIIASTNDSKVLTQYYNSSLEIDAVSKKIVKFGAVATI 527
Query: 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVE 619
GGLK N+SN APK+MYYSARGPDPEDS +ADI+KPNL+APGN IWAAWSS+GTDSVE
Sbjct: 528 CGGLKPNYSNVAPKVMYYSARGPDPEDSLPHEADILKPNLLAPGNFIWAAWSSVGTDSVE 587
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQR 679
F GE+FA+MSGTSMAAPH+AGLAALI+QKFP+FSP+AI SALST+A+LYDK+GGPIMAQR
Sbjct: 588 FLGENFALMSGTSMAAPHVAGLAALIRQKFPNFSPAAIGSALSTTASLYDKSGGPIMAQR 647
Query: 680 AYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDA 715
+YA PD+NQ PATPFDMGSGFVNA+ +L+PGLVFD+
Sbjct: 648 SYASPDQNQPPATPFDMGSGFVNASGALNPGLVFDS 683
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 718 | ||||||
| TAIR|locus:2128595 | 856 | AT4G20430 "AT4G20430" [Arabido | 0.952 | 0.799 | 0.693 | 1.8e-259 | |
| TAIR|locus:2163446 | 840 | AT5G44530 "AT5G44530" [Arabido | 0.933 | 0.797 | 0.671 | 1.3e-251 | |
| UNIPROTKB|Q94EF5 | 849 | P0665A11.6 "Uncharacterized pr | 0.944 | 0.798 | 0.668 | 2.1e-251 | |
| TAIR|locus:2204619 | 832 | AT1G30600 "AT1G30600" [Arabido | 0.934 | 0.806 | 0.633 | 1.2e-230 | |
| UNIPROTKB|Q5Z852 | 820 | P0468G03.18 "Putative meiotic | 0.853 | 0.747 | 0.470 | 3.1e-147 | |
| TAIR|locus:2059052 | 815 | SLP3 "AT2G19170" [Arabidopsis | 0.916 | 0.807 | 0.451 | 2.5e-145 | |
| TAIR|locus:2126485 | 816 | AT4G30020 "AT4G30020" [Arabido | 0.915 | 0.805 | 0.451 | 2.2e-144 | |
| UNIPROTKB|Q0JBB7 | 815 | Os04g0543700 "Os04g0543700 pro | 0.832 | 0.733 | 0.416 | 2.5e-120 | |
| TAIR|locus:2027139 | 832 | ALE1 "AT1G62340" [Arabidopsis | 0.848 | 0.731 | 0.411 | 2.3e-116 | |
| UNIPROTKB|Q6ZKR5 | 796 | OJ1117_F10.11 "Os08g0452100 pr | 0.477 | 0.430 | 0.347 | 5.7e-68 |
| TAIR|locus:2128595 AT4G20430 "AT4G20430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2497 (884.0 bits), Expect = 1.8e-259, P = 1.8e-259
Identities = 481/694 (69%), Positives = 557/694 (80%)
Query: 32 QDDSEPDD--EITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLN-NPR 88
QD+ D TAVYIVTL+QA S+H F QE + K TS + +R PR
Sbjct: 26 QDNGGDSDINSTTAVYIVTLRQASSLHLFQQEAEEVKRVRDQSKHGDTS-KFTRPKLQPR 84
Query: 89 NVSIS-HPRSGYN-ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRR 146
N+S S + RS + I++ HDS+LR A KGEKY+KLYS+HYLINGF+VFV+ QQAE LSRR
Sbjct: 85 NISRSRYWRSRRSAIAQAHDSLLRNALKGEKYIKLYSFHYLINGFAVFVSSQQAETLSRR 144
Query: 147 REVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSF- 205
REVAN+V DFSVRTATT+TPQF+GLP+GAW++EGGYETAGEG+VIGFIDTGIDPTHPSF
Sbjct: 145 REVANIVLDFSVRTATTYTPQFMGLPKGAWVKEGGYETAGEGIVIGFIDTGIDPTHPSFN 204
Query: 206 ADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265
D S+ YP+P+HFSG+CEVT DFPSGSCNRKL+GARHFA SAITRGIFNSS+DYASPF
Sbjct: 205 GTDTSQRQYPIPNHFSGVCEVTPDFPSGSCNRKLVGARHFAQSAITRGIFNSSEDYASPF 264
Query: 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXX 325
DGDGHG+HTAS+AAGNHG+ VV+GH+FG+ASG+APR+HI+VYKALYKSFGGF
Sbjct: 265 DGDGHGTHTASIAAGNHGVSAVVSGHNFGSASGIAPRAHISVYKALYKSFGGFAADVVAA 324
Query: 326 XXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM 385
SLSITPNRRPPG+ATFFNP+DMA+LSA KAGIFVVQAAGNTGPSPKSM
Sbjct: 325 IDQAAQDGVDILSLSITPNRRPPGVATFFNPLDMAMLSAVKAGIFVVQAAGNTGPSPKSM 384
Query: 386 SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXX 443
SSFSPWIFTVGAASHDR Y+NSI+LGN+++I GVGLA TD K YT+ISAL AL
Sbjct: 385 SSFSPWIFTVGAASHDRDYSNSIVLGNNVSIPGVGLALRTDEGKKYTMISALDALKNKSS 444
Query: 444 XXD-DMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFY 502
D DMYVGECQD +F++D+++GNLLICSYSIRFVLGLSTIKQA AKNLSA G+VFY
Sbjct: 445 VVDKDMYVGECQDYGSFDKDVIRGNLLICSYSIRFVLGLSTIKQALAVAKNLSAKGVVFY 504
Query: 503 MDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562
MDP+V+GFQ+NPTPM MPGIIIPS +DSK+LL+YYNSSL RD TK+I++FGAVA I GG
Sbjct: 505 MDPYVLGFQINPTPMDMPGIIIPSAEDSKVLLKYYNSSLVRDGTTKEIVRFGAVAAIAGG 564
Query: 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQG 622
ANFSN APKIMYYSARGPDP+DS +DADI+KPNLVAPGNSIW AWSS T+S EF+G
Sbjct: 565 QNANFSNRAPKIMYYSARGPDPQDSLFNDADILKPNLVAPGNSIWGAWSSAATESTEFEG 624
Query: 623 ESFAMMSGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYA 682
ESFAMMSGTSMAAPH+AG+AAL+KQK +D G IMAQRAYA
Sbjct: 625 ESFAMMSGTSMAAPHVAGVAALVKQKFRKFSPSAIASALSTTSVLFDNKGEAIMAQRAYA 684
Query: 683 KPDENQSPATPFDMGSGFVNATASLDPGLVFDAS 716
PD+ SPATPFDMG+GFVNATA+LDPGL+FD S
Sbjct: 685 NPDQTISPATPFDMGNGFVNATAALDPGLIFDTS 718
|
|
| TAIR|locus:2163446 AT5G44530 "AT5G44530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2423 (858.0 bits), Expect = 1.3e-251, P = 1.3e-251
Identities = 460/685 (67%), Positives = 540/685 (78%)
Query: 36 EPDDEITAVYIVTLKQAPSVHRFA-QELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISH 94
+ DD+ +AVYIVTLKQ P VH F QEL+ HK++ + +L NN R H
Sbjct: 30 QDDDDDSAVYIVTLKQPPIVHLFEEQELK--------HKKSKFTPKLRPRNNSRK---RH 78
Query: 95 PRSGY-NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVV 153
+S ++ + HDS LR+ KGEKY+KLYSYHYLINGF++F+ QQAEKLS R+EVAN+V
Sbjct: 79 GKSKIPSVVQSHDSFLRKTLKGEKYIKLYSYHYLINGFALFINSQQAEKLSMRKEVANIV 138
Query: 154 SDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHS 213
D+SVRTATT+TPQF+GLPQGAW++EGG+E AGEGV+IGFIDTGIDP HPSF D+ S+ S
Sbjct: 139 LDYSVRTATTYTPQFMGLPQGAWVKEGGFEIAGEGVIIGFIDTGIDPNHPSFNDNDSKRS 198
Query: 214 YPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSH 273
YP+P HFSG+CEVT DFPSGSCN+KLIGARHFA SA+TRGIFNSS+DYASPFDGDGHG+H
Sbjct: 199 YPIPKHFSGVCEVTPDFPSGSCNKKLIGARHFAQSAVTRGIFNSSEDYASPFDGDGHGTH 258
Query: 274 TASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXX 333
TASVAAGNHG+PV+V+ H+FG ASG+APR+ I+VYKALYKSFGGF
Sbjct: 259 TASVAAGNHGVPVIVSNHNFGYASGIAPRAFISVYKALYKSFGGFAADVVAAIDQAAQDG 318
Query: 334 XXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIF 393
SLSITPNR+PPG+ATFFNPIDMALLSA KAGIFVVQAAGNTGP+PK+MSSFSPWIF
Sbjct: 319 VDILSLSITPNRKPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKTMSSFSPWIF 378
Query: 394 TVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXXXXDDMYVG 451
TVGA+SHDR+Y+NS+ LGN++TI G+G A TD KMY +ISA HAL DMYVG
Sbjct: 379 TVGASSHDRVYSNSLTLGNNVTIPGMGFAIPTDSGKMYKMISAFHALNNSTSVDKDMYVG 438
Query: 452 ECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ 511
ECQD NF+QD V G LLICSYS RFVLGLSTIKQA + AKNLSA G++FY+DP+V+GF+
Sbjct: 439 ECQDYENFDQDRVSGKLLICSYSARFVLGLSTIKQALDVAKNLSATGVIFYIDPYVLGFE 498
Query: 512 LNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571
+NPTPM MPGIIIPS +DSK LL+YYNSS++RD TK+I+ FGAVA I GGL ANFSN A
Sbjct: 499 INPTPMDMPGIIIPSVEDSKTLLKYYNSSIQRDVTTKEIVSFGAVAAIEGGLNANFSNRA 558
Query: 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGT 631
PK+MYYSARGPDPED+ +DAD++KPNLVAPGNSIW AWSS TDS EF+GE FAMMSGT
Sbjct: 559 PKVMYYSARGPDPEDNSFNDADVLKPNLVAPGNSIWGAWSSASTDSTEFEGEKFAMMSGT 618
Query: 632 SMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPA 691
SMAAPH+AG+AALIKQ D G PIMAQR Y+ PD++ A
Sbjct: 619 SMAAPHVAGVAALIKQSYPQFTPSTISSALSTTALLNDNKGSPIMAQRTYSNPDQSLYTA 678
Query: 692 TPFDMGSGFVNATASLDPGLVFDAS 716
TP DMGSGFVNATA+LDPGLVFD S
Sbjct: 679 TPSDMGSGFVNATAALDPGLVFDTS 703
|
|
| UNIPROTKB|Q94EF5 P0665A11.6 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2421 (857.3 bits), Expect = 2.1e-251, P = 2.1e-251
Identities = 456/682 (66%), Positives = 539/682 (79%)
Query: 39 DEITAVYIVTLKQAPSVHRFAQELRRGNKN--HGFHKQNGTSGRLSRLNNPRNVSISHPR 96
+E TAVYIVT+KQAP H+ R G+ G G + S L PR+
Sbjct: 32 EEGTAVYIVTMKQAPVFHKRLDLERFGSSRVAGGGGGGGGDTPSTSILMKPRHGPAQPMN 91
Query: 97 SGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDF 156
G + R+ +S+L+R +GE+Y+KLYSY YLINGF+V +TPQQAE+LS +EVANV+ DF
Sbjct: 92 YGSYLVRLQNSLLKRTLRGERYIKLYSYRYLINGFAVVITPQQAERLSMTKEVANVMLDF 151
Query: 157 SVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPV 216
SVRTATTHTP+FLGLPQGAW+QEGG + AG+GVV+G IDTGIDPTHPSFADD SYPV
Sbjct: 152 SVRTATTHTPEFLGLPQGAWVQEGGPQCAGQGVVVGLIDTGIDPTHPSFADDLITDSYPV 211
Query: 217 PSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS 276
P+H+SGICEVT DFPSGSCNRKL+GARHFAASAITRG+FN+SQD+ASP D DGHG+HTAS
Sbjct: 212 PAHYSGICEVTNDFPSGSCNRKLVGARHFAASAITRGVFNASQDHASPSDSDGHGTHTAS 271
Query: 277 VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXX 336
+AAGNHGIPVVV GHHFGNASGMAPR+HIAVYKALYKSFGGF
Sbjct: 272 IAAGNHGIPVVVAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAIDQAAEDNVDI 331
Query: 337 XSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
SLSITPNRRPPG+ATFFNPIDMALLSA KAGIFVVQAAGNTGPSPKSMSS+SPWIFTVG
Sbjct: 332 ISLSITPNRRPPGLATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSYSPWIFTVG 391
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXXXXDDMYVGECQ 454
A++HDR Y N ++LGN+LTI+GVGLAPGTD M+TL++A HAL +M +GECQ
Sbjct: 392 ASAHDREYNNYVVLGNNLTITGVGLAPGTDGDSMFTLVAAPHALKNNVASPTEMSLGECQ 451
Query: 455 DSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP 514
DSS+ ++DL++G +L+CSYSIRFVLGLS++KQA +TAKN+SAAG++FY+DPFVIGFQLNP
Sbjct: 452 DSSHLDEDLIRGKILVCSYSIRFVLGLSSVKQALDTAKNVSAAGVIFYLDPFVIGFQLNP 511
Query: 515 TPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574
TPM MPG+IIPS DDSK+ L YYN SL RDE + KI+ FGA+A ILGG N+ SAPK+
Sbjct: 512 TPMDMPGLIIPSSDDSKVFLNYYNESLVRDETSNKIVSFGAIAKILGGQNPNYGISAPKV 571
Query: 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634
M+YSARGPDPED+ L +ADI+KPNL+APG+SIW AWSSLG DS EF GESFA++SGTSMA
Sbjct: 572 MFYSARGPDPEDNSLANADILKPNLIAPGSSIWGAWSSLGLDSAEFAGESFAIISGTSMA 631
Query: 635 APHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPF 694
APH+AGLAAL+KQK D+ G PIMAQR Y P+ QSPATPF
Sbjct: 632 APHVAGLAALVKQKFPYFSPAAIGSALSTTTSLSDREGNPIMAQRTYGNPNSTQSPATPF 691
Query: 695 DMGSGFVNATASLDPGLVFDAS 716
DMG+GFVNATA+LDPGL+FD+S
Sbjct: 692 DMGNGFVNATAALDPGLIFDSS 713
|
|
| TAIR|locus:2204619 AT1G30600 "AT1G30600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2225 (788.3 bits), Expect = 1.2e-230, P = 1.2e-230
Identities = 435/687 (63%), Positives = 511/687 (74%)
Query: 28 FCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNP 87
FC A+ D +AVYIVTLK PSVH +E + H TS ++ R N
Sbjct: 21 FCLAESDQNATVS-SAVYIVTLKDRPSVHFSGRE-----SSDSKHSLTATSSQIYRTLN- 73
Query: 88 RNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRR 147
RS +I RVHDS+LR + E YLKLYSYHYLINGFS +T +QA++L+ R
Sbjct: 74 --------RSA-SIIRVHDSLLRNVLRKENYLKLYSYHYLINGFSAVLTRKQADRLAARE 124
Query: 148 EVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFAD 207
EV NVV DF V ATTHTPQFLGLP+GAW+++GG E AGEGVVIGFIDTGIDPTHPSF+D
Sbjct: 125 EVENVVLDFLVEKATTHTPQFLGLPRGAWLRDGGSEYAGEGVVIGFIDTGIDPTHPSFSD 184
Query: 208 DASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267
S H+Y VP HF+G+CEVT FP GSCNRKLIGARHFA SA++RG+ NSSQD ASPFDG
Sbjct: 185 KISGHTYSVPPHFTGVCEVTIGFPPGSCNRKLIGARHFAESALSRGVLNSSQDDASPFDG 244
Query: 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXX 327
+GHG+HTASVAAGNHGIPVVV GH GNASGMAPR+HIA+YKALYK FGGF
Sbjct: 245 EGHGTHTASVAAGNHGIPVVVAGHRLGNASGMAPRAHIAIYKALYKRFGGFAADIIAAID 304
Query: 328 XXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
+LSITPNRRPPGIATFFNPIDMALLSA KAGIFVVQAAGNTGP+PKSMSS
Sbjct: 305 QAAQDGVDIINLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSS 364
Query: 388 FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALXXXXXXXDD 447
FSPWIFTVGA SHDR+Y+NSIILGN++TI GVGLA GT M+ L+ A HAL D
Sbjct: 365 FSPWIFTVGATSHDRVYSNSIILGNNVTIPGVGLASGTRIMHKLVLATHALRNGTTVMDA 424
Query: 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507
+YVGECQDSS+F+Q LVQG +L+CSY++RF+LG+STIKQA TAKNL+AAG+VFY+DP
Sbjct: 425 IYVGECQDSSSFDQKLVQGKILVCSYTVRFILGVSTIKQALLTAKNLTAAGLVFYIDPSA 484
Query: 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567
GFQ+ +PM +PGI+I SP DS+ LL+YYNSSL R+ + KI+ +VA I+GG++ +
Sbjct: 485 TGFQMTSSPMDIPGILISSPQDSQALLRYYNSSLLRENGSGKIVGSASVAKIVGGMRPTY 544
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+APK+MY+SARGPDPED DADIMKPNLVAPGN+IW AWS LG + +FQGE FAM
Sbjct: 545 GITAPKVMYFSARGPDPEDDSFVDADIMKPNLVAPGNAIWGAWSPLGIGTNDFQGERFAM 604
Query: 628 MSGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDEN 687
SGTSM+APH+ G+AALIKQK D+ G IMAQR PD +
Sbjct: 605 ESGTSMSAPHVTGIAALIKQKFPHFTPAAIASALSTTASLSDRKGEHIMAQRTVLNPDIS 664
Query: 688 QSPATPFDMGSGFVNATASLDPGLVFD 714
QSPATPFDMGSGFVNATA+LDPGL+FD
Sbjct: 665 QSPATPFDMGSGFVNATAALDPGLIFD 691
|
|
| UNIPROTKB|Q5Z852 P0468G03.18 "Putative meiotic serine proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
Identities = 292/620 (47%), Positives = 379/620 (61%)
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD +L Y KLYSYH+LINGF+V ++P QAE L + V +V D ++
Sbjct: 68 HLRRYHDKLLDSLLVEGTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHVERDMKIQ 127
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHTPQFLGLP G W GG++ AGE VVIGF+D+GI P HPSF+ ++ PVP H
Sbjct: 128 KLTTHTPQFLGLPTGVWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDPYGPVP-H 186
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA 279
+ G CE+ CN K++GA+HFA +AI G FN D+ASP DGDGHGSHTA++AA
Sbjct: 187 YKGKCEMDPVTRRSFCNGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSHTAAIAA 246
Query: 280 GNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSL 339
GN+GIPV + GH FG ASGMAPR+ IAVYK LY+ FGG+ +L
Sbjct: 247 GNNGIPVRMHGHEFGKASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDGVDILNL 306
Query: 340 SITPNRRPPGI-ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S+ PN P TF NP D ALLSA KAG+FV QAAGN GP PK++ SFSPWI TV A
Sbjct: 307 SVGPNSPPTATRTTFLNPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAG 366
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDS 456
DR Y N ++LGN + G+G++P T +K ++LISA AL +CQ
Sbjct: 367 VDDRRYKNHLVLGNGKLLPGLGVSPATHENKSFSLISAADALLGSSATKYSAL--DCQRP 424
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
N+ +QG +L+C YS ++ G ++IK+ ETA++L AAG + ++ G + +P P
Sbjct: 425 ELLNKRKIQGKILLCGYSFNYISGTASIKKVSETARSLGAAGFIVAVENSYPGTKFDPVP 484
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+ MPGI+I +K L+ YYNSS RD + F A A I GL NSAP++
Sbjct: 485 VSMPGILITDVSRTKDLIDYYNSSTIRDWAGRATT-FQATAAIADGLAPTLYNSAPQVAL 543
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636
+S+RGPD +D DAD++KP+++APGN IWAAW+ GTD + GE FAM+SGTSMAAP
Sbjct: 544 FSSRGPDVKDFSFQDADVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSMAAP 603
Query: 637 HIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPFDM 696
HIAG+AALIKQK DK P+ AQ+ + ATPFD
Sbjct: 604 HIAGIAALIKQKNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTLTRATPFDY 663
Query: 697 GSGFVNATASLDPGLVFDAS 716
GSG VN A+LDPGLV DA+
Sbjct: 664 GSGAVNPKAALDPGLVLDAT 683
|
|
| TAIR|locus:2059052 SLP3 "AT2G19170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 307/680 (45%), Positives = 404/680 (59%)
Query: 41 ITA-VYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGY 99
+TA VYIVT++ P + +G +N GF S +++ + + R
Sbjct: 17 VTAEVYIVTMEGDPIISY------KGGEN-GFEATAVESDE--KIDTSSELVTVYAR--- 64
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD IL F+ Y KLYSY +LINGF+ V+P+QAE L R V +V D+ VR
Sbjct: 65 HLERKHDMILGMLFEEGSYKKLYSYKHLINGFAAHVSPEQAETLRRAPGVRSVDKDWKVR 124
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHTP+FLGLP W GG++ AGE +VIGF+D+GI P HPSFA P+P H
Sbjct: 125 RLTTHTPEFLGLPTDVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFASHHRLPYGPLP-H 183
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA 279
+ G CE CNRK++GA+HFA +A G FN DYASP DGDGHGSHTA++AA
Sbjct: 184 YKGKCEEDPHTKKSFCNRKIVGAQHFAEAAKAAGAFNPDIDYASPMDGDGHGSHTAAIAA 243
Query: 280 GNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSL 339
GN+GIP+ + G+ FG ASGMAPR+ IAVYKALY+ FGGF SL
Sbjct: 244 GNNGIPLRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSL 303
Query: 340 SITPNRRPPGI-ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S+ PN P TF NP D LL A KAG+FV QAAGN GP PK++ S+SPWI TV AA
Sbjct: 304 SVGPNSPPTTTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 363
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDS 456
DR Y N + LGN ++G+GL+P T ++YTL+SA L + +CQ
Sbjct: 364 IDDRRYKNHLTLGNGKMLAGMGLSPPTRPHRLYTLVSANDVLLDSSVSKYNP--SDCQRP 421
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
FN+ LV+GN+L+C YS FV+G ++IK+ TAK+L AAG V ++ G + +P P
Sbjct: 422 EVFNKKLVEGNILLCGYSFNFVVGTASIKKVVATAKHLGAAGFVLVVENVSPGTKFDPVP 481
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+PGI+I S L+ YYN+S RD T ++ F A I GL SAP++
Sbjct: 482 SAIPGILITDVSKSMDLIDYYNASTSRDW-TGRVKSFKAEGSIGDGLAPVLHKSAPQVAL 540
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636
+SARGP+ +D DAD++KP+++APG IWAAW GTD + GE FA++SGTSMAAP
Sbjct: 541 FSARGPNTKDFSFQDADLLKPDILAPGYLIWAAWCPNGTDEPNYVGEGFALISGTSMAAP 600
Query: 637 HIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDE-NQSPATPFD 695
HIAG+AAL+KQK D+ G + AQ+ Y+ + ATPFD
Sbjct: 601 HIAGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRLLQAQQ-YSDTEAVTLVKATPFD 659
Query: 696 MGSGFVNATASLDPGLVFDA 715
GSG VN +A+LDPGL+FDA
Sbjct: 660 YGSGHVNPSAALDPGLIFDA 679
|
|
| TAIR|locus:2126485 AT4G30020 "AT4G30020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
Identities = 308/682 (45%), Positives = 405/682 (59%)
Query: 41 ITA-VYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGY 99
+TA +YIVT++ P + +G N GF S +++ + S+ R
Sbjct: 17 VTAEIYIVTMEGEPIISY------KGGDN-GFEATAVESDE--KIDTTSELVTSYAR--- 64
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD +L F Y KLYSY +LINGF+ V+P QAE L R V +V D+ VR
Sbjct: 65 HLERKHDMLLGMLFVEGSYKKLYSYKHLINGFAAHVSPDQAEMLRRAPGVKSVDRDWKVR 124
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSY-PVPS 218
TTHTPQFLGLP W GGY+ AGE +VIGFID+GI P HPSFA + Y P PS
Sbjct: 125 KLTTHTPQFLGLPTDVWPTGGGYDRAGEDIVIGFIDSGIFPHHPSFASHHTTVPYGPHPS 184
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVA 278
+ G CE CN K+IGA+HFA +A G FN D+ASP DGDGHGSHTA++A
Sbjct: 185 -YKGKCEEDPHTKISFCNGKIIGAQHFAEAAKAAGAFNPDIDFASPMDGDGHGSHTAAIA 243
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXS 338
AGN+GIPV + G+ FG ASGMAPR+ IAVYKALY+ FGGF S
Sbjct: 244 AGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILS 303
Query: 339 LSITPNRRPPGIA--TFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
LS+ PN PP TF NP D LL A KAG+FV QAAGN GP PK++ S+SPWI TV
Sbjct: 304 LSVGPNS-PPATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 362
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQ 454
AA DR Y N + LGN ++G+GL+P T + Y ++SA L + +CQ
Sbjct: 363 AAIDDRRYKNHLTLGNGKMLAGIGLSPSTRPHRSYKMVSANDVLLGSSGMKYNP--SDCQ 420
Query: 455 DSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP 514
N+ LV+GN+L+C YS FV G ++IK+ ETAK+L AAG V ++ G + +P
Sbjct: 421 KPEVLNKKLVEGNILLCGYSFNFVAGSASIKKVAETAKHLGAAGFVLVVENVSPGTKFDP 480
Query: 515 TPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574
P +PGI+I S L+ YYN + RD + + + F A I GL+ SAP++
Sbjct: 481 VPSCIPGILITDVSKSMDLIDYYNVTTSRDWMGR-VKDFKAEGSIGDGLEPILHKSAPEV 539
Query: 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634
+SARGP+ +D DAD++KP+++APG+ IW+AWS+ GTD + GE FA++SGTSMA
Sbjct: 540 ALFSARGPNTKDFSFQDADLLKPDILAPGSLIWSAWSANGTDEANYIGEGFALISGTSMA 599
Query: 635 APHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDE-NQSPATP 693
APHIAG+AAL+KQK D+ G P+ AQ+ Y++ + ATP
Sbjct: 600 APHIAGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRPLQAQQ-YSETETVTLVKATP 658
Query: 694 FDMGSGFVNATASLDPGLVFDA 715
FD GSG VN +A+LDPGL+FDA
Sbjct: 659 FDYGSGHVNPSAALDPGLIFDA 680
|
|
| UNIPROTKB|Q0JBB7 Os04g0543700 "Os04g0543700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 257/617 (41%), Positives = 355/617 (57%)
Query: 105 HDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEK-LSRRREVANVVSDFSVRTATT 163
HD L Y KLYSY +L+NGF+++ ++A K LS + V + D + TT
Sbjct: 72 HDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQEDIKMAKMTT 131
Query: 164 HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI 223
+TP+++G W GG E AG+GVVIG +DTGIDP++PSF S+ + P P+ F G
Sbjct: 132 YTPRYIGA-NVVWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLS-TSDQAKPPPASFKGT 189
Query: 224 CEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHG 283
C+ FP SCN K++GAR FA + G FN++ YASP+D DGHGSHTAS AAGN
Sbjct: 190 CQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTASTAAGNFH 249
Query: 284 IPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITP 343
P + G++FG+ASG+AP +H+A+YKA Y SFGG+ SLS+ P
Sbjct: 250 TPAISKGYNFGHASGVAPGAHLAIYKAAY-SFGGYMSDVIAAVDKAVEDGVDIISLSLGP 308
Query: 344 NRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI 403
G A+F N ++ LL A KAGI VVQA GN GP S+ SFSPWI +VGA++ DR
Sbjct: 309 TTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGASTTDRK 368
Query: 404 YTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDSSNFNQ 461
Y SII+GN S GL+P T + MY L A CQD F +
Sbjct: 369 YNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTNSTGGSS----NCQDPDVFIR 424
Query: 462 DLVQGNLLICSY-SIRFVLGLSTIKQAFETAKNLSAAGIVFY-MDPFVIGFQLNPT-PMK 518
LVQG ++IC + S + G + +T + + AAG++ + +PT P
Sbjct: 425 SLVQGKVIICMFVSSNYYEG-DFLAGIVDTIQKIGAAGVIITDRSSSDSDIEYHPTFPTS 483
Query: 519 MPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578
+P I+ + D++ LL+YY+ +L RD+ + KFGA IL G +A ++ AP + YS
Sbjct: 484 IPSAIVVNSADAQALLEYYDDNLVRDK-EGSVTKFGATIRILDGRRAIYTREAPVVAEYS 542
Query: 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638
+RGPD +D + AD++KPN++APG+ IW AWS VEFQGES+AM+SGTSMA PH+
Sbjct: 543 SRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMATPHV 602
Query: 639 AGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPFDMGS 698
AG+ ALI+Q+ D++G P+MA+R + ATPFDMG+
Sbjct: 603 AGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMARRDGGVLER----ATPFDMGA 658
Query: 699 GFVNATASLDPGLVFDA 715
G +NA ++DPGLVFDA
Sbjct: 659 GAINAARAVDPGLVFDA 675
|
|
| TAIR|locus:2027139 ALE1 "AT1G62340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 258/627 (41%), Positives = 344/627 (54%)
Query: 101 ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160
I +HD IL + Y KLYS+ ++IN +V T QA+KL + + V V D V+
Sbjct: 78 IEEIHDEILGSTLEKGSYTKLYSFKHVINAIAVRTTASQAKKLGKTKGVKAVEEDKGVKL 137
Query: 161 ATTHTPQFLGLPQGAW--IQEGGYETAGEGVVIGFIDTGIDPTHPSFA--DDASEHSYPV 216
TT+TP FL LPQ W I G AGE +VIGF+DTGI+PTHPSFA D + +S +
Sbjct: 138 MTTYTPDFLELPQQVWQKISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYSSNL 197
Query: 217 PS-HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
HFSG CE+ FP GSCN K+I AR F+A A G NSS D SPFD GHGSH A
Sbjct: 198 SRLHFSGDCEIGPFFPPGSCNGKIISARFFSAGARASGALNSSLDILSPFDASGHGSHVA 257
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXX 335
S+AAGN G+PV+V G +G ASGMAPRS IAVYKA+Y S G
Sbjct: 258 SIAAGNAGVPVIVDGFFYGRASGMAPRSRIAVYKAIYPSIGTLVDVIAAIDQAIMDGVDV 317
Query: 336 XXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 395
+LS+ P+ P T D+A+L A KAG+FVVQA GN GPSP S+ S+SPW+ V
Sbjct: 318 L-TLSVGPDEPPVDKPTVLGIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVVGV 376
Query: 396 GAASHDRIYTNSIILGNSLTISGVGLA-P--GTDKM-YTLISALHALXXXXXXXDDMY-- 449
A + DR Y +IL T+ GVGL+ P G + + L+ A A+ +
Sbjct: 377 AAGNTDRSYPAPLILDGGQTVQGVGLSGPTLGAPLVQHRLVLAKDAVRTNGSVLQPLTRD 436
Query: 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG 509
+ ECQ NF+ V G+++IC++S F +ST+ +TA+ L G + +P
Sbjct: 437 IEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTARTLGFMGFILIANPRFGD 496
Query: 510 FQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII-KFGAVACILGGLKANFS 568
+ P PGI+IP+ ++I+L+YY RD T+ + +FGA A I G + F+
Sbjct: 497 YVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRD--TRGVATQFGARARIGEGRNSVFA 554
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
AP + +S+RGP D+ D++KP+++APG+ IW AWS G SFA++
Sbjct: 555 GKAPVVSRFSSRGPAFIDATRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFAIL 614
Query: 629 SGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQ 688
SGTSMA PHIAG+ ALIKQ YD NG I A+ Y +
Sbjct: 615 SGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISAE--YYELSR-L 671
Query: 689 SPATPFDMGSGFVNATASLDPGLVFDA 715
P+ FD G+G VN +LDPGLV A
Sbjct: 672 FPSNHFDHGAGHVNPARALDPGLVLPA 698
|
|
| UNIPROTKB|Q6ZKR5 OJ1117_F10.11 "Os08g0452100 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 5.7e-68, Sum P(2) = 5.7e-68
Identities = 126/363 (34%), Positives = 182/363 (50%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGL---PQGAWI 177
+++Y +GFS ++P A L+ VA VV + + ATT +P+FLGL P A +
Sbjct: 78 IHTYSAAFHGFSARMSPAAAAALAEAPGVAAVVPERVRQLATTRSPRFLGLLSSPPSALL 137
Query: 178 QEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNR 237
+ + G +VI IDTGI PTH SF D PVPS + G+C FP SCNR
Sbjct: 138 ADSDF---GSDLVIAIIDTGISPTHRSFHDRGLG---PVPSKWRGVCSSGPGFPPNSCNR 191
Query: 238 KLIGARHFAAS-AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA 296
KL+GAR F+A T G N + + SP D DGHG+HTAS+AAG + P G+ G A
Sbjct: 192 KLVGARFFSAGYEATSGRMNETAEVRSPLDTDGHGTHTASIAAGRYVFPASTLGYARGVA 251
Query: 297 SGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNP 356
+GMAP++ +A YK + G F SLS+ P + +
Sbjct: 252 AGMAPKARLAAYKVCWVG-GCFDSDILAAFDAAVADGVDVVSLSVGGVVVP----YYLDA 306
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416
I + A +AGI V +AGN GP ++++ +PW+ TVGA S DR + ++ LGN +
Sbjct: 307 IAIGAFGATEAGIVVSASAGNGGPGGLTVTNVAPWMATVGAGSMDRAFPANVQLGNGQVL 366
Query: 417 SGVGLAPG----TDKMYTLISALHALXXXXXXXDDMYVGECQDSSNFNQDLVQGNLLICS 472
GV + G + KMY L+ A + D C D S + V+G +++C
Sbjct: 367 DGVSVYGGPALQSGKMYELVYAGASSGAASSAADGYSASMCLDGS-LDPAAVRGKIVVCD 425
Query: 473 YSI 475
+
Sbjct: 426 RGV 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 718 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-107 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-31 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-29 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-29 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-20 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 7e-20 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-17 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-15 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 4e-15 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 6e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 6e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 9e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-10 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 7e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-10 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-09 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-09 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 7e-09 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-08 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 7e-07 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 8e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 4e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 6e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-04 | |
| cd07491 | 247 | cd07491, Peptidases_S8_7, Peptidase S8 family doma | 5e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 6e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 7e-04 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 8e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 0.001 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.002 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 0.002 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.002 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 0.003 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.004 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-107
Identities = 115/239 (48%), Positives = 145/239 (60%), Gaps = 7/239 (2%)
Query: 161 ATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHF 220
TT +P FLGLP G AGEG++IG +DTGI P HPSFAD P P +
Sbjct: 4 HTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFAD---VGGGPYPHTW 60
Query: 221 SGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG 280
G C DF SCN KLIGAR+F+ G FNS +Y SP D DGHG+HTAS AAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 281 NHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS 340
N + V G FG ASG+APR+ IAVYK + G F +D++AAIDQA DGVD+IS S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
I P + +PI +A L A +AGIFV +AGN+GP ++ + +PW+ TV A++
Sbjct: 181 IGGGSPDP----YEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 80/259 (30%), Positives = 112/259 (43%), Gaps = 52/259 (20%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+GV + IDTGID THP G N K+ G F
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGG------------------------PGFPNDKVKGGYDF 36
Query: 246 ---AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
+ + S AS D GHG+H A + AGN G + G G+AP+
Sbjct: 37 VDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPK 88
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + YK L G ++AAI+QA DG+D+I+LS+ + P P +A+
Sbjct: 89 ADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDD-----PDAIAIN 143
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420
+A KAG+ VV AAGN+GP+P ++ S +P TVG AS + +G S +
Sbjct: 144 NAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVG-ASTVADVAEADTVGPSSSRGPPT 202
Query: 421 L---------APGTDKMYT 430
APG D M T
Sbjct: 203 SDSAIKPDIVAPGVDIMST 221
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 58/231 (25%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G+ + +DTGID HP F G DF + R
Sbjct: 1 GKGITVAVLDTGIDAPHP---------------DFDGRIIRFADFVNTVNGRT------- 38
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+P+D +GHG+H A + AG+ G G G+AP +++
Sbjct: 39 -----------------TPYDDNGHGTHVAGIIAGS-GRASN------GKYKGVAPGANL 74
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI-TPNRRPPGIATFFNPIDMA 360
K L S G +D++A ID ++ + +++LS+ P G +P+ A
Sbjct: 75 VGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGE----DPLCQA 130
Query: 361 LLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSII 409
+ AGI VV AAGN+GP P +++S SP + TVG A D + I
Sbjct: 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVG-AVDDNGPHDDGI 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-29
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 592 ADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651
A +KP++ APG I AAW+ G D + +GE FA +SGTSMA+PH+AG+AAL+K P
Sbjct: 233 ASTLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 652 FSPSAIASALSTSAT 666
+SP+AI SAL T+A
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-20
Identities = 66/243 (27%), Positives = 91/243 (37%), Gaps = 58/243 (23%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V + IDTG+DP HP F
Sbjct: 1 VTVAVIDTGVDPDHPDLDG------------------------------------LFGGG 24
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
++ P DG+GHG+H A + A + V G+AP + +
Sbjct: 25 DGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIPV 75
Query: 309 KALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA 367
K L G ++D+ AAID AA G D+I+LS+ P + ID AL AK
Sbjct: 76 KVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG-GPGSPPSSALSEAIDYAL---AKL 131
Query: 368 GIFVVQAAGNTGPSPKSMSSF---SPWIFTVGA-ASHDRIYTNSIILGNSLTISGVGLAP 423
G+ VV AAGN GP + + SP + VGA + S G + I+ AP
Sbjct: 132 GVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIA----AP 187
Query: 424 GTD 426
G D
Sbjct: 188 GGD 190
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 7e-20
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
A + S+RGP DS +KP++VAPG I + GT +A
Sbjct: 186 VAEADTVGPSSSRGPPTSDS------AIKPDIVAPGVDIMSTAPGSGTG--------YAR 231
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA-TLYDKNGGPIMAQRAYAKPDE 686
MSGTSMAAPH+AG AAL+KQ P +SP+ I +AL +A LYD +G
Sbjct: 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGV------------- 278
Query: 687 NQSPATPFDMGSGFVNATAS 706
G+G V+A +
Sbjct: 279 ---VYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 3e-17
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 59/195 (30%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + IDTGID +HP
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL---------------------------------------- 20
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPRSHIA 306
I G + D DG+GHG+H A +AA ++G+ VV G+AP + +
Sbjct: 21 -NIVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGVGVV----------GVAPEADLY 69
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK 366
K L G +D++A I+ A ++G+DII++S+ P + A+ A
Sbjct: 70 AVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALRE-------AIKKAYA 122
Query: 367 AGIFVVQAAGNTGPS 381
AGI VV AAGN+G
Sbjct: 123 AGILVVAAAGNSGNG 137
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 65/251 (25%), Positives = 91/251 (36%), Gaps = 66/251 (26%)
Query: 179 EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238
+ T G GV + +DTG+DPTHP Y DF
Sbjct: 20 KAWDITGGSGVTVAVVDTGVDPTHPDLLKVKFVLGY--------------DF-------- 57
Query: 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASG 298
++ D D +GHG+H A + A T + G A G
Sbjct: 58 ----------------VDNDSD---AMDDNGHGTHVAGIIAAA-------TNNGTGVA-G 90
Query: 299 MAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPID 358
+AP++ I K L + G AD+ I AA G +I+LS+ G +
Sbjct: 91 VAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSL-------GGGLGSTALQ 143
Query: 359 MALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNSLT 415
A+ A G+ VV AAGN G S S + P V A D ++N G +
Sbjct: 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNY---GKWVD 200
Query: 416 ISGVGLAPGTD 426
+S APG
Sbjct: 201 VS----APGGG 207
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632
I Y+S+RGP + +KP++VAPG +I + S G G + MSGTS
Sbjct: 179 GISYFSSRGPTGDG-------RIKPDVVAPGENIVSCRSPGGNPG-AGVGSGYFEMSGTS 230
Query: 633 MAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
MA PH++G AL+ Q P +P + L +AT
Sbjct: 231 MATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-15
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466
+ LGN TI G L PG K Y L+ + D+ C S V+G
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSAN-------SGDVDASLCLPGSLDP-SKVKG 52
Query: 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPS 526
+++C G ++ + K AG++ DP + +P + +
Sbjct: 53 KIVLCDRG-----GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD-AHVLPAVHV-D 105
Query: 527 PDDSKILLQYYNSS 540
+D +L Y NS+
Sbjct: 106 YEDGTAILSYINST 119
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 62/218 (28%), Positives = 86/218 (39%), Gaps = 57/218 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV +G ID+GID +HP FA SE
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGRVSE---------------------------------- 27
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ + + YAS DGD HG+H A V A G G G+AP + +
Sbjct: 28 ----ASYYVAVNDAGYASNGDGDSHGTHVAGVIAAA------RDG---GGMHGVAPDATL 74
Query: 306 AVYKALYKSFGGFA-ADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFF--------NP 356
+A + F+ AD+ AA D A GV II+ S N ++T + N
Sbjct: 75 YSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNT 134
Query: 357 IDMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIF 393
+ AL AA AG V AAGN G +P ++ P++
Sbjct: 135 LLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLE 172
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 50/218 (22%)
Query: 190 VIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249
+G +DTGID HP + +Y F
Sbjct: 1 TVGVLDTGIDVNHPDLSGRYIGLAYRNGYDFV---------------------------- 32
Query: 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYK 309
++ D D +GHG+H A + A + G+AP + + K
Sbjct: 33 ------DNDPDPTPDDDNNGHGTHVAGIIAAGDN--------NGSGGVGVAPNAKLESVK 78
Query: 310 ALYKSFGGFAADVVAAIDQAA--QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA 367
L S GG +++ AI+ AA + + +I++S+ P PP + ++A+ A
Sbjct: 79 VLPGS-GGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPS-SWSSAIDELAVNGADNK 136
Query: 368 GIFVVQAAGNTGPSPKSMSSFSP---W-IFTVGAASHD 401
G V AAGN G + P I TVGA + +
Sbjct: 137 GSLFVVAAGNGGDYADNNPVSDPASANNIITVGAVTEN 174
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
KP++VAPG +I ++ + SGTSMAAP +AG AAL+ PS +P
Sbjct: 191 KPDIVAPGGNILSSGPGGDLGG-------YDSHSGTSMAAPLVAGAAALLLSANPSLTPE 243
Query: 656 AIASALSTSATLYDKNG 672
+ + L T+AT G
Sbjct: 244 TLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635
Y+S+ GP E KP++ APG +I + + G +A++SGTSMA
Sbjct: 190 YFSSWGPTNELYL-------KPDVAAPGGNILSTYPL--------AGGGYAVLSGTSMAT 234
Query: 636 PHIAGLAALIKQKF-PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPF 694
P++AG AAL+ Q SP+ + L+++A + G A
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG----------TSALPDLAPVA 284
Query: 695 DMGSGFVNATASLDPGLVFDASK 717
G+G VNA +L S
Sbjct: 285 QQGAGLVNAYKALYATTTLSPSS 307
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 62/275 (22%), Positives = 97/275 (35%), Gaps = 90/275 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ G GV + +DTGI TH F A DF G +
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEFGGRAI---------------WGADFVGGDPDS---- 60
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
D +GHG+H A G G+A
Sbjct: 61 ------------------------DCNGHGTHVAGTVGGK--------------TYGVAK 82
Query: 302 RSHI-AVYKALYKSFGGFAADVVAAIDQAAQDGVD-----IISLSITPNRRPPGIATFFN 355
++++ AV K L + G + ++A ++ A D + ++S+
Sbjct: 83 KANLVAV-KVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG--------GGAST 133
Query: 356 PIDMALLSAAKAGIFVVQAAGNTG--PSPKSMSSFSPWIFTVGA-ASHDRI--YTNSIIL 410
+D A+ +A AG+ VV AAGN+ S +S +P TVGA S D ++N
Sbjct: 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPAS-APEAITVGATDSDDARASFSNY--- 189
Query: 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
G+ + I APG D I + ++ T T
Sbjct: 190 GSCVDI----FAPGVD-----ILSAWIGSDTATAT 215
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 39/215 (18%)
Query: 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSG 233
W +GGY+ GEG+V+ ID+G+DPTH +F DD S+ Y E +
Sbjct: 2 LW-DKGGYK--GEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEF------EAKKKKAGI 52
Query: 234 S----CNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVT 289
N K+ A ++A +++ D DG HG H A + AGN
Sbjct: 53 GYGKYYNEKVPFAYNYA---------DNNDDILDEDDGSSHGMHVAGIVAGNGD-----E 98
Query: 290 GHHFGNASGMAPRSHIAVYKAL-YKSFGG-FAADVVAAIDQAAQDGVDIISLSITPNRRP 347
+ G+AP + + K G + AI+ A + G D+I++S+
Sbjct: 99 EDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG----- 153
Query: 348 PGIATFFNPIDM---ALLSAAKAGIFVVQAAGNTG 379
A F + D A+ A +AG+ VV AAGN G
Sbjct: 154 -STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 40/194 (20%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+GV + +DTGID THP+ G C F G C K+ G F
Sbjct: 12 GKGVKVAVVDTGIDYTHPAL----------------GGC-----FGPG-C--KVAGGYDF 47
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
N P D GHG+H A + A N +G+AP + +
Sbjct: 48 VGDDYDGT--NPPVPDDDPMDCQGHGTHVAGIIAANPNAY---------GFTGVAPEATL 96
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
Y+ S ++AA +A +DG D+I+ S+ P G + +P +
Sbjct: 97 GAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG---GPSGWS--EDPWAVVASRIV 151
Query: 366 KAGIFVVQAAGNTG 379
AG+ V AAGN G
Sbjct: 152 DAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 65/264 (24%), Positives = 88/264 (33%), Gaps = 83/264 (31%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
VV+ IDTG+D HP D+ N I
Sbjct: 3 DVVVAVIDTGVDYNHPDLKDNMWV------------------------NPGEIP------ 32
Query: 248 SAITRGIFNSSQDY-------------ASPFDGDGHGSHTASV--AAGNHGIPVVVTGHH 292
GI + Y P D +GHG+H A + A GN+GI +
Sbjct: 33 ---GNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGIGIA----- 84
Query: 293 FGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIAT 352
G+A I K L G +D + AID A G II+ S G
Sbjct: 85 -----GVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSW-------GGGG 132
Query: 353 FFNPIDMALLSAAKAGIFVVQAAGNTG---------PSPKSMSSFSPWIFTVGAASH-DR 402
+ A+ A AGI V AAGN G P+ S I +V A D
Sbjct: 133 PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPA----SYDLDNIISVAATDSNDA 188
Query: 403 IYTNSIILGNSLTISGVGLAPGTD 426
+ + S ++ ++ APG D
Sbjct: 189 LASFSNYGKKTVDLA----APGVD 208
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
+S +S+ GP+ E L APG I + + +A +
Sbjct: 157 DSNNNRASFSSTGPEVE-------------LAAPGVDILSTYP----------NNDYAYL 193
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661
SGTSMA PH+AG+AAL+ K P + + + AL
Sbjct: 194 SGTSMATPHVAGVAALVWSKRPELTNAQVRQAL 226
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG +I++ G + +SGTS AAPH++G AAL+ QKFP + +
Sbjct: 208 LAAPGENIYSTDPDGGNG--------YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVR 259
Query: 659 SALSTSAT 666
L T+AT
Sbjct: 260 QTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 49/196 (25%), Positives = 67/196 (34%), Gaps = 46/196 (23%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V + ID+GIDP HP + S +S ++ +
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYS--------------KNLVPKGGYDGKEAGETGDIN 47
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
I D GHG+ A A N GN G+AP I Y
Sbjct: 48 DIV--------------DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSY 81
Query: 309 KALYKSFGGFAADVVAAIDQAAQDGVDIISLS-----ITPNRRPPGIATFFNPIDMALLS 363
+ ++ ++ AI AA DGVD+I+LS I +N A+
Sbjct: 82 RVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVE-YNAYKKAINY 140
Query: 364 AAKAGIFVVQAAGNTG 379
A G VV AAGN G
Sbjct: 141 AKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
A FS+ + P D + KP++ APG +++A
Sbjct: 165 AWFSSFGSSGASLVSAPDSPPD------EYTKPDVAAPGVDVYSARQG------ANGDGQ 212
Query: 625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+ +SGTSMAAPH+AG+AAL+ P SP I AL+ +A
Sbjct: 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVE 619
G S+++ + +S+RGP D +KP+LVAPG I +A S G
Sbjct: 187 NGEGGLGQSDNSDTVASFSSRGP------TYDG-RIKPDLVAPGTGILSARSGGGGIGDT 239
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKF------PSFSPSA 656
++ SGTSMA P +AG AAL++Q F F+PSA
Sbjct: 240 SD-SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSA 281
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
++ APG I ++ ++ G +A +SGTSMAAP +AG+AAL+ P +P+
Sbjct: 181 GVDIAAPGGDILSSPTTGG--------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPA 232
Query: 656 AIASALSTS 664
+ +AL ++
Sbjct: 233 QVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 40/150 (26%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ + ++ +S+ GP P+ LD +KP++ APG +I++ ++
Sbjct: 228 NPNGGQMSGFSSWGPTPD---LD----LKPDITAPGGNIYST----------VNDNTYGY 270
Query: 628 MSGTSMAAPHIAGLAALIKQ----KFPSFSPSAIASAL-----STSATLYDKNGGPIMAQ 678
MSGTSMA+PH+AG +AL+KQ K+P S + + +T+ D
Sbjct: 271 MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE------- 323
Query: 679 RAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ ++ +P G+G ++ ++
Sbjct: 324 -------DTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
+ + +S+RGP +KP++ APG +I +A G +
Sbjct: 182 DRNDVLADFSSRGPSTYGR-------IKPDISAPGVNIRSAVP----------GGGYGSS 224
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFS 653
SGTSMAAPH+AG+AAL+ PS
Sbjct: 225 SGTSMAAPHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-11
Identities = 66/287 (22%), Positives = 100/287 (34%), Gaps = 90/287 (31%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD-------DASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238
G G+V+ IDTG+D THP+ + +++H Y
Sbjct: 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDY------------------------ 36
Query: 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASG 298
F+ + P+D +GHG+HT GN G G G
Sbjct: 37 --------------NWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIG 73
Query: 299 MAPRSH-IAVYKALYKSFGGFAADVVAAID------QAAQDGVDIISLSITPNRRP---- 347
+AP + IA +AL GG AD + +A + D P+ P
Sbjct: 74 VAPGARWIAC-RAL-DRNGGNDADYLRCAQWMLAPTDSAGNPAD-------PDLAPDVIN 124
Query: 348 ------PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAA 398
G + P A AGIF V AAGN GP ++++ P F VGA
Sbjct: 125 NSWGGPSGDNEWLQPAVAAW---RAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGAT 181
Query: 399 SHDRIYTNSIILGNSLTISGVG---LAPGTDKMYTLISALHALNNNT 442
+ + + G S T + APG + + + ++ T
Sbjct: 182 DRNDVLADFSSRGPS-TYGRIKPDISAPGVNIRSAVPGGGYGSSSGT 227
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
++ APG I +AW T A +SGTSMAAPH+AGLAA + P SP+ +
Sbjct: 194 DIFAPGVDILSAWIGSDTA--------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245
Query: 658 ASALSTSAT 666
+ L AT
Sbjct: 246 KARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKP--NLVAPGNSIWAAWSSLGTDSVE 619
G +A++SN P + D+ P + + N S+ GT S
Sbjct: 201 GQRASYSNYGPAV------------------DVSAPGGDCASDVNGDGYPDSNTGTTSPG 242
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664
G ++ + GTSMAAPH+AG+AAL+K PS +P+ I S L ++
Sbjct: 243 --GSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG I + G + MSGTSMA PH+AG AAL+ P+ + + I
Sbjct: 202 LAAPGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIK 251
Query: 659 SALSTSAT 666
A+ +SA
Sbjct: 252 DAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 62/296 (20%), Positives = 94/296 (31%), Gaps = 87/296 (29%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++G DTG+D H F D P+ T F +RK++
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYD---------PNFNK-----TNLF-----HRKIV----- 41
Query: 246 AASAITRGIFNSSQDYA-SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
+ + D DGHG+H A + AG G+AP++
Sbjct: 42 -----------RYDSLSDTKDDVDGHGTHVAGIIAGKG-----NDSSSISLYKGVAPKAK 85
Query: 305 IAVYKALYKSFGGFA-ADVVAAIDQAAQDGVDIISLSITPNRRP--PGIA------TFFN 355
+ S + D+ G I S S +A + N
Sbjct: 86 LYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNN 145
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPW----IFTVGAASHDRIYTNSIILG 411
P D+ V +AGN G S + SP + TVGA+++ + LG
Sbjct: 146 P-DIL----------FVFSAGNDGNDG-SNTIGSPATAKNVLTVGASNNPSVSNGEGGLG 193
Query: 412 NSLTISGVG-----------------LAPGTDKMYTLISALHALNNNTTTTDDMYV 450
S V +APGT ++SA T+D Y
Sbjct: 194 QSDNSDTVASFSSRGPTYDGRIKPDLVAPGTG----ILSARSGGGGIGDTSDSAYT 245
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 61/266 (22%), Positives = 92/266 (34%), Gaps = 68/266 (25%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
VV+ IDTG+D HP + G
Sbjct: 1 VVVAIIDTGVDLNHPDLSGKP-------------------KLVPG--------------- 26
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMAPRSHIA 306
+N + D DGHG+ A VAA GN+G+ V +G+AP + +
Sbjct: 27 ------WNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGV----------AGVAPGAKLM 70
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK 366
+ + +D+ AI AA +G D+IS S G + I A+ +AA
Sbjct: 71 PVRIADSLGYAYWSDIAQAITWAADNGADVISNSW-------GGSDSTESISSAIDNAAT 123
Query: 367 -----AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421
G V+ AAGN+G S S + +P + V A + + GN + +
Sbjct: 124 YGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYVDLV---- 179
Query: 422 APGTDKMYTLISALHALNNNTTTTDD 447
APG T A +
Sbjct: 180 APGVGIWTTGTGRGSAGDYPGGGYGS 205
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-09
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 92 ISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVAN 151
+S + H S A LYSY + NGF+ +T ++AEKL + +V
Sbjct: 10 VSKAAVFSSHKSWHASSKEEAAGASI---LYSYKHGFNGFAAKLTEEEAEKLRKHPDVEY 66
Query: 152 VVSDFSVRTA 161
V D V
Sbjct: 67 VEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 55/215 (25%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + +DTG+D HP A ++ DF
Sbjct: 1 GVTVAVLDTGVDADHPDLAGRVAQ---------------WADFDE--------------- 30
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
N FD GHG+H + G G G G+AP + +
Sbjct: 31 --------NRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLH 73
Query: 308 YKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPG-IATFFNPIDMALLSAAK 366
K L G + ++A ++ A + D++S+S+ + + +
Sbjct: 74 GKVLDDGGGSLSQ-IIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALS------NQ 126
Query: 367 AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
G V +AGN G + +VGA D
Sbjct: 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 56/242 (23%), Positives = 77/242 (31%), Gaps = 86/242 (35%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV + +DTGID THP+FA G T+ F G
Sbjct: 7 GAGVRVAVLDTGIDLTHPAFA---------------GRDITTKSFVGGE----------- 40
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG--NHGIPVVVTGHHFGNASGMAPRS 303
DG GHG+H A G G G+A +
Sbjct: 41 -----------------DVQDGHGHGTHCAGTIFGRDVPGPRY-----------GVARGA 72
Query: 304 HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA--- 360
IA+ + GG ++A I A +G D+IS+S+ + PG+ P +A
Sbjct: 73 EIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADF--PGLVDQGWPPGLAFSR 130
Query: 361 --------------------LLSAAKAGIFVVQAAGN-----TGPSPKSMSSFSPWIFTV 395
+A G +V AAGN G P + P V
Sbjct: 131 ALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGV 190
Query: 396 GA 397
A
Sbjct: 191 AA 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 24/109 (22%)
Query: 597 PNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656
++ APG I +A G S MSGTSMA PH+AG+AAL + P A
Sbjct: 213 VDIAAPGVDIVSAAPGGGYRS----------MSGTSMATPHVAGVAALWAEALPKAGGRA 262
Query: 657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATA 705
+A+ L A+ A+ + D G G A A
Sbjct: 263 LAALL--------------QARLTAARTTQFAPGLDLPDRGVGLGLAPA 297
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
I +S RGP + +KP++ APG +I A G + SGTS+
Sbjct: 359 IAIFSGRGPTRDG-------RIKPDIAAPGVNILTASP----------GGGYTTRSGTSV 401
Query: 634 AAPHIAGLAALIKQ------KFPSFSPSAIASALSTSAT 666
AA +AG AL+ Q P I + L A
Sbjct: 402 AAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 36/146 (24%), Positives = 50/146 (34%), Gaps = 36/146 (24%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADI--------MKPNLVAPGNSIWAAWSSLGTDSVE 619
+ + S P S D I KP++ AP GT +
Sbjct: 154 VDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVN-------GTVDGD 206
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQR 679
G+ GTS AAPH AG+AAL+ P +P+ I AL ++A
Sbjct: 207 --GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTAL------------- 251
Query: 680 AYAKPDENQSPATPFDMGSGFVNATA 705
+ P GSG V+A
Sbjct: 252 ------DMGEPGYDNASGSGLVDADR 271
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 601 APG-NSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-FSPSAIA 658
APG +I + L D G ++ +SGTSMAAPH++G+AAL+ KFP F+P I
Sbjct: 212 APGVGTILSTVPKLDGD----GGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIR 267
Query: 659 SALSTS 664
L S
Sbjct: 268 KLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
+ APG I + +A MSGTSMA PH+AG+AAL+ + P S S +
Sbjct: 201 VSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVR 249
Query: 659 SALSTSA 665
AL +A
Sbjct: 250 DALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 46/196 (23%)
Query: 270 HGSHTASV--AAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327
HG+H A A N+G+ V +G+A + I + L K GG +D+V +
Sbjct: 73 HGTHVAGTIAAVTNNGVGV----------AGVAWGARILPVRVLGKC-GGTLSDIVDGMR 121
Query: 328 QAA---QDGV-------DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGN 377
AA GV +I+LS+ + AT N I+ G+ VV AAGN
Sbjct: 122 WAAGLPVPGVPVNPNPAKVINLSLGGDGACS--ATMQNAINDV----RARGVLVVVAAGN 175
Query: 378 TGPSPKSMSSFSPW----IFTVGAASHDRI---YTNSIILGNSLTISGVGLAPGTDKMYT 430
G S S +P + VGA Y+N G ++ +S APG D
Sbjct: 176 EG---SSASVDAPANCRGVIAVGATDLRGQRASYSN---YGPAVDVS----APGGDCASD 225
Query: 431 LISALHALNNNTTTTD 446
+ + +N TT+
Sbjct: 226 VNGDGYPDSNTGTTSP 241
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 47/163 (28%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD-DASEHSYPVPSHFSGICEVTR-------DFPSGSCNR 237
G+GV++G IDTGID HP F + D + TR P G
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGT----------------TRILYIWDQTIPGGPPPG 46
Query: 238 KLIGARHFAASAITRGIFNSSQDYAS--PF-DGDGHGSHTASVAAGNHGIPVVVTGHHFG 294
G + I +S + P D +GHG+H A +AAGN G +
Sbjct: 47 GYYGGGEYTEEIINA--ALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNP 96
Query: 295 NASGMAPRSHIAV-----YKALYKSFGGFA-----ADVVAAID 327
+ G+AP + + V K + F D++ AI
Sbjct: 97 DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIK 139
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
++ +S+ GP + +KP+++A G I+ D +
Sbjct: 181 DANGNKASFSSIGPTADGR-------LKPDVMALGTGIYVI----NGDG------NITYA 223
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+GTS + P IAGL A + Q P+++ I A+ SA
Sbjct: 224 NGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.8 bits (115), Expect = 8e-06
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
SF +D ++ APG +I S +++ G + +SGTSMAAPH++G+AAL+
Sbjct: 319 ASFSNDGSPTGVDIAAPGVNIL---SLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALV 375
Query: 646 KQKFPSF-SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704
P+ +P+ + + + T+A L +G + AT G+ N T
Sbjct: 376 LSANPNELTPAQVRNLIVTTAGLTPLSGV---DNLVGGGLANLDAAATDVAGGTLPANGT 432
Query: 705 ASLDPGLVFDA 715
S +
Sbjct: 433 GSSQGAVEAPG 443
|
Length = 508 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.4 bits (114), Expect = 1e-05
Identities = 51/226 (22%), Positives = 77/226 (34%), Gaps = 53/226 (23%)
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236
+ G G+GV + IDTG+D +HP A
Sbjct: 132 LVANGAGLTGKGVTVAVIDTGVDASHPDLAG----------------------------- 162
Query: 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA 296
SA+ G F D +GHG+H A A V +
Sbjct: 163 -----------SAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAA-------VIFDNGAGV 204
Query: 297 SGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDG--VDIISLSITPNRRPPGIATF 353
+G+AP + + + K L G G +DV I+ AA G D+I+LS+ +
Sbjct: 205 AGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPAL 264
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
+ + A A G+ +V AAGN G + P +
Sbjct: 265 GDALAAA---ANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVI 307
|
Length = 508 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++ +S+RGP A KP+L A G WA L + E+F + GTSM
Sbjct: 221 VVSWSSRGPSI-------AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSM 273
Query: 634 AAPHIAGLAAL----IKQKF--PSFSPSAIASALSTSA 665
A P AG AAL +K+K + P + + L ++A
Sbjct: 274 ATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPG--------NSIWAAWSSLGT 615
+ ++ A A S +KP++VA G + SL T
Sbjct: 181 DDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLT 240
Query: 616 DSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
G F + GTS AAP A LAA + + P SP I
Sbjct: 241 TLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETI 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
A G I A +V SG S AAPH+ G+ AL+ + P + +
Sbjct: 165 FSADGVDIIAPAPHGRYLTV----------SGNSFAAPHVTGMVALLLSEKPDIDANDLK 214
Query: 659 SALSTSAT 666
L A
Sbjct: 215 RLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 61/248 (24%), Positives = 84/248 (33%), Gaps = 89/248 (35%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
G+ I ID G H +FA F N +++G F
Sbjct: 1 GITIAVIDAGFPKVHEAFA-----------------------FKHLFKNLRILGEYDF-- 35
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
+ NS+ + D HG+ S AG P G G AP A
Sbjct: 36 ------VDNSNNTN---YTDDDHGTAVLSTMAGY--TP--------GVMVGTAPN---AS 73
Query: 308 YKALYKSFGGFAADV-----------VAAIDQAAQDGVDIISLSITPNRRPPGIATFFNP 356
Y L ++ DV VAA + A GVDIIS S+ G TF NP
Sbjct: 74 Y-YLART-----EDVASETPVEEDNWVAAAEWADSLGVDIISSSL-------GYTTFDNP 120
Query: 357 I------DM----ALLS-----AAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAA 398
DM + +S AA G+ VV +AGN G + + + +VGA
Sbjct: 121 TYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAV 180
Query: 399 SHDRIYTN 406
+ +
Sbjct: 181 DANGNKAS 188
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 53/186 (28%), Positives = 74/186 (39%), Gaps = 33/186 (17%)
Query: 259 QDYASPFDG----DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI--------A 306
D+ DG DGHG+ A + AG G G SG+AP + I A
Sbjct: 38 GDFVGSGDGTDDCDGHGTLVAGIIAGRPGEG---DGF-----SGVAPDARILPIRQTSAA 89
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS-ITPNRRPPGIATFFNPIDMALLSAA 365
S G + AI +AA G D+I++S + G + A+ A
Sbjct: 90 FEPDEGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADD--PELGAAVRYAL 147
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSP--WIFTVGAASHDRIYTNSIILGNSLTISG--VGL 421
G+ VV AAGNTG + + P + + S DR T S S ++ G V L
Sbjct: 148 DKGVVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTPS-----SFSLPGPWVDL 202
Query: 422 -APGTD 426
APG +
Sbjct: 203 AAPGEN 208
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 57/273 (20%), Positives = 89/273 (32%), Gaps = 47/273 (17%)
Query: 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGS 234
AW + T G G+++ +DTG+D THP + G
Sbjct: 2 AW----EFGTGGPGIIVAVVDTGVDGTHPDLQGNGD----------------------GD 35
Query: 235 CNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHF 293
+ +F N G GHG+H A +AA N+ V G
Sbjct: 36 GYDPAVNGYNFV--------PNVGDIDNDVSVGGGHGTHVAGTIAAVNNNG-GGVGGIAG 86
Query: 294 GNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS---ITPNRRPPGI 350
G+AP I + + V AAI AA +G I+ S P +
Sbjct: 87 AG--GVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLL 144
Query: 351 A-TFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSII 409
F I+ A S GI V A + + +++ P + V A + +
Sbjct: 145 KDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAY-PGVIAVAALDTNDNKASFSN 203
Query: 410 LGNSLTISGVGLAPGTDKMYTLISALHALNNNT 442
G + I+ APG + + + L
Sbjct: 204 YGRWVDIA----APGVGTILSTVPKLDGDGGGN 232
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 322 VVAAIDQAAQDGVDIISLSIT---PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAA--- 375
AI+ A + VDIIS+S T P I N ++ A+ A GI + +A
Sbjct: 91 AAKAIEAAVEKKVDIISMSWTIKKPEDNDNDI----NELENAIKEALDRGILLFCSASDQ 146
Query: 376 GNTGPSPKSMSSFSPWIFTVGAASHDR 402
G + IF +GAA D
Sbjct: 147 GAFTGDTYPPPAARDRIFRIGAADEDG 173
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG +I SL G+ A SGTS AAP ++G AAL++ +FP + + +
Sbjct: 202 LAAPGENI----VSLSPG-----GDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVR 252
Query: 659 SALSTSA 665
+ +A
Sbjct: 253 RRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 21/177 (11%)
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK 313
+F + HG+H AS+ G V G+AP +
Sbjct: 36 LFTYAAAACQDGGASAHGTHVASLIFGQPCSSV----------EGIAPLCRGLNIPIFAE 85
Query: 314 SFGGFA-ADVVAAIDQAAQDGVDIISLS---ITPNRRPPGIATFFNPIDMALLSAAKAGI 369
G + D+ AI+ A + G II++S +T I N + M + +
Sbjct: 86 DRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILA--NAVAM----CQQNNV 139
Query: 370 FVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426
+V AAGN G + + + P + VGA D + G G+ LAPG +
Sbjct: 140 LIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGI-LAPGEN 195
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653
L APG +I++ F S+ ++GTSMAAPH+A +A+LI PS S
Sbjct: 534 LAAPGTNIYST----------FPKNSYRKLNGTSMAAPHVAAIASLILSINPSLS 578
|
Length = 639 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 34/133 (25%)
Query: 536 YYNSSLERD-EVTKKIIKFGAVACILG-GLKANFSNSAPKIMYYSARGPDPEDSFLDDAD 593
+ N + E I GA + L ANFSN Y + D
Sbjct: 191 FPNDYDKNGGEPANNFITVGASSKKYENNLVANFSN-------YGKKNVD---------- 233
Query: 594 IMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653
+ APG I++ + SGTSMAAP ++G+AALI +P+ +
Sbjct: 234 -----VFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLT 278
Query: 654 PSAIASALSTSAT 666
+ + S
Sbjct: 279 AKEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 51/259 (19%), Positives = 81/259 (31%), Gaps = 76/259 (29%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + ID+G+D HP + A + + I V+
Sbjct: 1 GVRVAVIDSGVDTDHPDLGNLALDG---EVTIDLEIIVVS-------------------- 37
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
A D DGHG+ A + AP + I
Sbjct: 38 --------------AEGGDKDGHGTACAGIIKK------------------YAPEAEIGS 65
Query: 308 YKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA-K 366
K L + + + A+ ++ + I++LS+ G P+ LL A K
Sbjct: 66 IKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG------GPGDRDFPLLKELLEYAYK 119
Query: 367 AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426
AG +V AA N +SF P + V + + D + I A G D
Sbjct: 120 AGGIIVAAAPNNNDIGTPPASF-PNVIGVKSDTADD-------PKSFWYIYVEFSADGVD 171
Query: 427 KMYTLISALHALNNNTTTT 445
+I+ A + T
Sbjct: 172 ----IIAP--APHGRYLTV 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 52/254 (20%), Positives = 79/254 (31%), Gaps = 94/254 (37%)
Query: 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
AW E G G+GV + +D G++ THP D P
Sbjct: 30 PAW--EQGI--TGKGVTVAVVDDGLEITHPDLKD--------------------NYDPEA 65
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASPF--DGDGHGSHTASVAA--GNHGIPVVVT 289
S + FN + +P D + HG+ A A GN+GI V
Sbjct: 66 SYD------------------FNDNDPDPTPRYDDDNSHGTRCAGEIAAVGNNGICGV-- 105
Query: 290 GHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR--- 346
G+AP + + + L D D V+ SL + P+
Sbjct: 106 --------GVAPGAKLGGIRML---------------DGDVTDVVEAESLGLNPDYIDIY 142
Query: 347 -----PPGIATFFNPIDMALLSAAKAG----------IFVVQAAGNTGPSPKSMS----S 387
P + A + G IFV AAGN G + + +
Sbjct: 143 SNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVW-AAGNGGNLGDNCNCDGYN 201
Query: 388 FSPWIFTVGAASHD 401
S + +V A + +
Sbjct: 202 NSIYTISVSAVTAN 215
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 623 ESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+ + + SGTS AAP +AG+ AL+ Q P SP S L+ +A
Sbjct: 240 DGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 47/194 (24%), Positives = 66/194 (34%), Gaps = 62/194 (31%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V +G IDTGID HP +A
Sbjct: 1 VRVGMIDTGIDTAHP----------------------------------------ALSAV 20
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
I R F A HG+ AS+ AG G A V+
Sbjct: 21 VIARLFFAGPGAPAPSA----HGTAVASLLAGA--------GAQRPGLLPGADLYGADVF 68
Query: 309 KALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA- 367
G A + A+D A+ GV ++++S+ PP N + A ++AA A
Sbjct: 69 GRAGGGEGASALALARALDWLAEQGVRVVNISLAG---PP------NALLAAAVAAAAAR 119
Query: 368 GIFVVQAAGNTGPS 381
G+ +V AAGN GP+
Sbjct: 120 GMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+ APG +W A G + +SGTS AAP + AL+ Q P +P
Sbjct: 168 DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASPL-APDDA 216
Query: 658 ASALSTSA 665
+ L+ +A
Sbjct: 217 RARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 627 MMSGTSMAAPHIAGLAALI----KQKFPSFSPSAIASALSTSAT 666
+M+GTSM++P+ G AL+ K + ++P ++ AL +A
Sbjct: 367 LMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+A M GTS+AAP ++G ALI K P P
Sbjct: 251 EGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 59/236 (25%), Positives = 88/236 (37%), Gaps = 57/236 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
GEGVVI +DTG+D +HP D ++ F D+ + L+
Sbjct: 1 GEGVVIAIVDTGVDYSHP---DLDIYGNFSWKLKF--------DYKA-----YLLPGMDK 44
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA-SGMAPRSH 304
I D HG+ ASVAAG + + G+ G+AP +
Sbjct: 45 WGGFY--VIMY---------DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAK 93
Query: 305 IAVYKAL--------YKSFGGFAADVVAAIDQAAQDG---VDIIS----LSITPNR-RPP 348
IA KAL + GF D V G VD+IS +S P
Sbjct: 94 IAAVKALWFGDVIYAWLWTAGF--DPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151
Query: 349 G---IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAAS 399
G + + + G+ +V AAGN GP ++++ + +VGAA+
Sbjct: 152 GLDISSLVIDAL------VTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 26/156 (16%)
Query: 264 PFDGDGHGSHTASV--AAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 321
P D + HG+H + + A GN+ I +V G+ RS + + KAL G D
Sbjct: 374 PMDDNYHGTHVSGIISAIGNNNIGIV----------GVDKRSKLIICKALDSHKLGRLGD 423
Query: 322 VVAAIDQAAQDGVDII--SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+ D +I S S F + + GI V +A N
Sbjct: 424 MFKCFDYCISREAHMINGSFSFDEYS-----GIFNESVK----YLEEKGILFVVSASNCS 474
Query: 380 PSPKSMSSFSPWIFTVGA---ASHDRIYTNSIILGN 412
+ +S V + N I + N
Sbjct: 475 HTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSN 510
|
Length = 639 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 718 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.88 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.75 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.55 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.51 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.48 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.37 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.23 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.61 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.59 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.37 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.32 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.22 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.19 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.16 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.09 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.05 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.04 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.0 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 96.99 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 96.81 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 96.79 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 96.78 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 95.15 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 90.38 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 90.28 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 86.37 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 85.88 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 85.82 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 84.3 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 83.08 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 81.75 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 80.69 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=432.04 Aligned_cols=306 Identities=51% Similarity=0.816 Sum_probs=253.8
Q ss_pred eccccCCCCCccCCCcccccc-cCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 005034 158 VRTATTHTPQFLGLPQGAWIQ-EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236 (718)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (718)
++++.+..+.+++++. .|.. .+..+++|+||+|||||||||++||+|.+... .++...|.+.+..+..+....++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG---GPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCC---CCCCCCCCCcccCCCCcCccCcC
Confidence 3567788888999887 7876 55668999999999999999999999998766 66777899999988888778899
Q ss_pred ceeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC
Q 005034 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG 316 (718)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~ 316 (718)
+|+++.++|..+.......+.......+.|..||||||||||+|+...+....+...+.+.||||+|+|+.+|+++....
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred CeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999987643322223334456678899999999999999876554444555567789999999999999988667
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEe
Q 005034 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396 (718)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVg 396 (718)
+..++++++|++|++++++|||||||.... ..+.+.++.++..+.++|++||+||||+|......++..|++|+||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 889999999999999999999999998653 2245778888888999999999999999988778888889999998
Q ss_pred eeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc
Q 005034 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (718)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~ 476 (718)
+++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 731
Q ss_pred cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (718)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (718)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhH
Q 005034 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (718)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 636 (718)
.||||+|||.+|++++..............|..++|||||||
T Consensus 236 --------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP 277 (307)
T cd04852 236 --------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASP 277 (307)
T ss_pred --------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHH
Confidence 356999999999999864322222224568999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 637 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
+|||++|||+|++|++++.|||++|++||+
T Consensus 278 ~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 278 HVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=450.37 Aligned_cols=290 Identities=21% Similarity=0.258 Sum_probs=212.9
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCcee--eeeeecchhhhhc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL--IGARHFAASAITR 252 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~ 252 (718)
+|... .+.+|+||+|||||||||++||||.++.+.+..+.. |..+..+..++.+ +.+++|.+
T Consensus 306 aw~~~--~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~---------GrdgiDdD~nG~vdd~~G~nfVd----- 369 (639)
T PTZ00262 306 TQELI--EPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH---------GRKGIDDDNNGNVDDEYGANFVN----- 369 (639)
T ss_pred HHHHh--hccCCCCcEEEEEccCCCCCChhhhhhccccccccc---------CccccccccCCcccccccccccC-----
Confidence 55542 247899999999999999999999987641111110 0000000111111 12233432
Q ss_pred CccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC
Q 005034 253 GIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (718)
Q Consensus 253 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (718)
+...|.|.+||||||||||+|..+++ .++.||||+|+|+++|+++..+.+..+++++||+||+++
T Consensus 370 -------~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~ 434 (639)
T PTZ00262 370 -------NDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISR 434 (639)
T ss_pred -------CCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHC
Confidence 23456789999999999999975433 357899999999999999986778999999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC--------------CCC----CCCceEE
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--------------MSS----FSPWIFT 394 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~--------------~~~----~~~~vit 394 (718)
|++|||||||+.. +...+.+|+.+|.++|++||+||||+|..... +|+ ..++||+
T Consensus 435 GA~VINmSlG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIa 507 (639)
T PTZ00262 435 EAHMINGSFSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVIT 507 (639)
T ss_pred CCCEEEeccccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEE
Confidence 9999999999743 34678899999999999999999999864321 222 2356666
Q ss_pred EeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEee
Q 005034 395 VGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYS 474 (718)
Q Consensus 395 VgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~ 474 (718)
|||++.+..
T Consensus 508 VGAv~~d~~----------------------------------------------------------------------- 516 (639)
T PTZ00262 508 VSNLIKDKN----------------------------------------------------------------------- 516 (639)
T ss_pred EeeccCCCC-----------------------------------------------------------------------
Confidence 666432110
Q ss_pred cccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeec
Q 005034 475 IRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFG 554 (718)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 554 (718)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhh
Q 005034 555 AVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634 (718)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmA 634 (718)
..-..+.||++|. .++||+|||++|+|+. +++.|..++|||||
T Consensus 517 ---------------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmA 559 (639)
T PTZ00262 517 ---------------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMA 559 (639)
T ss_pred ---------------CcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchh
Confidence 0001234566652 2349999999999998 56789999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccc-ccccccccCCCCe
Q 005034 635 APHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGS-GFVNATASLDPGL 711 (718)
Q Consensus 635 aP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-G~vn~~~Al~~~l 711 (718)
||||||+||||++++|+|++.||+++|++||.+++... ..+|| |+||+++||+..+
T Consensus 560 AP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~---------------------n~~~wgG~LDa~kAV~~Ai 616 (639)
T PTZ00262 560 APHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK---------------------NKVKWGGYLDIHHAVNLAI 616 (639)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC---------------------CccccCcEEcHHHHHHHHH
Confidence 99999999999999999999999999999998764322 12333 8999999997654
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=438.22 Aligned_cols=415 Identities=22% Similarity=0.248 Sum_probs=240.2
Q ss_pred CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecch----hhhhcCccCCCC
Q 005034 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA----SAITRGIFNSSQ 259 (718)
Q Consensus 184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~ 259 (718)
++|+||+|||||||||+.||+|...+. .+|+...|++....+.... ...+...+.. ..+.. ....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg--~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~---~~p~ 69 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDG--TTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALAS---DNPY 69 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCC--CchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhc---CCcc
Confidence 489999999999999999999998766 6789999999876543211 1112212221 11111 1112
Q ss_pred CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC----------CCHHHHHHHHHHH
Q 005034 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG----------GFAADVVAAIDQA 329 (718)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~----------~~~~~i~~ai~~a 329 (718)
+.....|..||||||||||||+.+++ .++.||||+|+|+++|++..... +..++++.||+|+
T Consensus 70 ~~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~ 141 (455)
T cd07478 70 DIVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYL 141 (455)
T ss_pred ccCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHH
Confidence 22345688999999999999986432 45789999999999999987543 5688999999999
Q ss_pred HHC-----CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCCCCCCCC-CCceEEEeeeccCC
Q 005034 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPKSMSSF-SPWIFTVGAASHDR 402 (718)
Q Consensus 330 ~~~-----g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~~~~~~~-~~~vitVgA~~~~~ 402 (718)
++. .+.|||||||...++.+ ....++++++.+..+ |++||+||||+|.....+... .+. + .
T Consensus 142 ~~~a~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~----~-----~ 209 (455)
T cd07478 142 YDKALELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPN----G-----E 209 (455)
T ss_pred HHHHHHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccC----C-----c
Confidence 875 47899999998766532 346788888887776 999999999999854333211 000 0 0
Q ss_pred ceeeeEEeCCCce-EeeeccCCCC-CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc----
Q 005034 403 IYTNSIILGNSLT-ISGVGLAPGT-DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR---- 476 (718)
Q Consensus 403 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~---- 476 (718)
.....+..+.+.. +..+-+.... .....++.+.......+. ..... ...+.+.....++.+..+...
T Consensus 210 ~~~ie~~v~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~----~~~~~---~~~~~~~~~~t~i~v~y~~~~~~~g 282 (455)
T cd07478 210 TKTVELNVGEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRIN----PGIGG---SESYKFVFEGTTVYVYYYLPEPYTG 282 (455)
T ss_pred eEEEEEEECCCCcceEEEEecCCCCEEEEEEECCCCCccCccC----cCCCc---ceeEEEEECCeEEEEEEcCCCCCCC
Confidence 0001111111111 0000000000 000111100000000000 00000 000001111111111111000
Q ss_pred -------cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccce
Q 005034 477 -------FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKK 549 (718)
Q Consensus 477 -------~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 549 (718)
+.......|+.........-..+-+|......-..........|...+.. +-....
T Consensus 283 ~~~i~i~~~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~~tit~-----------------Pa~~~~ 345 (455)
T cd07478 283 DQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPYTTLTI-----------------PGTARS 345 (455)
T ss_pred CeEEEEEccCCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCCceEec-----------------CCCCCC
Confidence 11111122221111111222223333222110000000000111111111 113456
Q ss_pred eeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccC
Q 005034 550 IIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMS 629 (718)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~s 629 (718)
+|+|++.. ...+.++.||||||+.+ +++||||+|||++|+++. +++.|..++
T Consensus 346 vitVga~~-----------~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~----------~~~~~~~~s 397 (455)
T cd07478 346 VITVGAYN-----------QNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTAS----------PGGGYTTRS 397 (455)
T ss_pred cEEEEEEe-----------CCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEee----------cCCcEEeeC
Confidence 77777753 22346899999999987 799999999999999998 567899999
Q ss_pred chhhhhHHHHHHHHHHHHhC------CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccc
Q 005034 630 GTSMAAPHIAGLAALIKQKF------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699 (718)
Q Consensus 630 GTSmAaP~VAG~aALl~q~~------p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 699 (718)
|||||||||||++|||+|++ |.+++++||++|++||+++.. ..+++++||||
T Consensus 398 GTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~GyG 455 (455)
T cd07478 398 GTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWGYG 455 (455)
T ss_pred cHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCCCC
Confidence 99999999999999999975 557999999999999998752 23568899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=412.66 Aligned_cols=272 Identities=28% Similarity=0.310 Sum_probs=204.0
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
|++|+||+|||||||||.+||++.+... . .+.+...+.. ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---~-----------------------~l~~~~~~~~------------~~~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---G-----------------------DLPGNVNVLG------------DLD 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---C-----------------------CCCcceeecc------------ccC
Confidence 5899999999999999999885432211 0 0000000000 012
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+ ||||+|+|+.+++.. ..+++++||+|++++|++|||||||
T Consensus 43 ~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 43 GGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 34578899999999994 899999999988643 4789999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
....+. .....+.++++++.++ |++||+||||+|... ..+|+..++||+|||++.+.....+...+.
T Consensus 100 ~~~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~-------- 168 (275)
T cd05562 100 YLNEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP-------- 168 (275)
T ss_pred ccCCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc--------
Confidence 754331 1224677888888887 999999999999854 345788999999999875543111000000
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
.......+.|+++
T Consensus 169 -------------------------------------------------------------------~~~~s~~~~~~~~ 181 (275)
T cd05562 169 -------------------------------------------------------------------GGTPSSFDPVGIR 181 (275)
T ss_pred -------------------------------------------------------------------CCCcccccCCccc
Confidence 0000123557888
Q ss_pred CCCCCCCCCCCCCCCCCceeccCC-ceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
||+.+ ++.||||+|||+ ++.++. .++.|..++|||||||||||++|||+|++|+++++|||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 689999999976 445544 456899999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 660 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
+|++||+++...+ .+..||||+||+.+||++
T Consensus 245 ~L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~~ 275 (275)
T cd05562 245 ALRSTALDMGEPG-------------------YDNASGSGLVDADRAVAA 275 (275)
T ss_pred HHHHhCcccCCCC-------------------CCCCcCcCcccHHHHhhC
Confidence 9999999875433 267899999999999974
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=405.09 Aligned_cols=245 Identities=26% Similarity=0.386 Sum_probs=197.4
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||||||.+||+|.+... ...| .. ..
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------~~~~-------------------------~~-------------~~ 39 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------RTNW-------------------------TN-------------EK 39 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------cccc-------------------------CC-------------CC
Confidence 8999999999999999999999985321 0011 10 12
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+|+.+ .+.||||+|+|+.+|++.++..+..+.++++|+|+++++++|||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 334778999999999998752 357999999999999998766677888999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
.... ....+.+++..+.++|++||+||||+|.... .+|+..++||+|||++.+
T Consensus 109 ~~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 163 (255)
T cd07479 109 GPDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------- 163 (255)
T ss_pred CCCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------
Confidence 7532 2345666777888999999999999997533 357778999999986432
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
+.++.|||+
T Consensus 164 -----------------------------------------------------------------------~~~~~~S~~ 172 (255)
T cd07479 164 -----------------------------------------------------------------------DNIARFSSR 172 (255)
T ss_pred -----------------------------------------------------------------------CccccccCC
Confidence 235778999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC----CCCHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----SFSPSA 656 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~ 656 (718)
|++.... ....|++||||+|||.+|+++. .++.|..++|||||||||||++|||+|++| .++|.+
T Consensus 173 g~~~~~~-p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~ 241 (255)
T cd07479 173 GMTTWEL-PGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPAS 241 (255)
T ss_pred CCCcccc-cCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHH
Confidence 9653100 0112789999999999999876 455788999999999999999999999999 799999
Q ss_pred HHHHHHhcccccc
Q 005034 657 IASALSTSATLYD 669 (718)
Q Consensus 657 ik~~L~~TA~~~~ 669 (718)
||++|++||++++
T Consensus 242 vk~~L~~sA~~~~ 254 (255)
T cd07479 242 MKQALIESATRLP 254 (255)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=414.23 Aligned_cols=291 Identities=27% Similarity=0.327 Sum_probs=191.6
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|||||||||.+||||.++.. . .|...++ ..+.+....++..+ ....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~---~----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN---F----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC---C----CcccccC---------cCCCccCCcCCCCC-----------ccCCCC
Confidence 7999999999999999999986532 0 1100000 00011111111111 113457
Q ss_pred CCCCCccccccccccCCCCCcccccc-ccCccccccCCceEEEEeecccCCCCCHHHHH-------HHHHHHH--HCCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGH-HFGNASGMAPRSHIAVYKALYKSFGGFAADVV-------AAIDQAA--QDGVD 335 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~-------~ai~~a~--~~g~~ 335 (718)
|.+||||||||||+|..+......++ ...++.||||+|+|+.+|++..........+. .+++|.. +++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999985322111000 11357899999999999999753333222222 2444443 67999
Q ss_pred EEEEcCCCCCCCCC-CCccccHHHHHHHHH-HHCCCEEEEecCCCCCCC--CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 336 IISLSITPNRRPPG-IATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 336 ViN~S~G~~~~~~~-~~~~~~~~~~a~~~a-~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
|||||||....... ...-.+....+++.+ .++|++||+||||+|... ...|+.++++|+|||++..+..+.+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~~-- 211 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYLF-- 211 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhhh--
Confidence 99999997542210 000112233333332 489999999999999853 456778999999999864322110000
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
..
T Consensus 212 ---------------------------------------~~--------------------------------------- 213 (311)
T cd07497 212 ---------------------------------------GY--------------------------------------- 213 (311)
T ss_pred ---------------------------------------cc---------------------------------------
Confidence 00
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
.....
T Consensus 214 ---------------------------------------------------------------------------~~~~~ 218 (311)
T cd07497 214 ---------------------------------------------------------------------------LPGGS 218 (311)
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 01123
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP- 650 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p- 650 (718)
+.++.||||||+.+ |++||||+|||++|+++.+.............|..++|||||||||||++|||+|++|
T Consensus 219 ~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~ 291 (311)
T cd07497 219 GDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKE 291 (311)
T ss_pred CCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhh
Confidence 45899999999987 7999999999999999876432211111234789999999999999999999999886
Q ss_pred -----CCCHHHHHHHHHhcc
Q 005034 651 -----SFSPSAIASALSTSA 665 (718)
Q Consensus 651 -----~ls~~~ik~~L~~TA 665 (718)
.++|++||++|++||
T Consensus 292 ~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 292 KEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=417.08 Aligned_cols=315 Identities=28% Similarity=0.445 Sum_probs=234.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCC----ccccccCCCCCCCCCceeeeeeecchhhh
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS----GICEVTRDFPSGSCNRKLIGARHFAASAI 250 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (718)
+|... .++|+||+|||||||||++||+|.+.... ...|. ............+.+.+++..++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDS-----KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCc-----ccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC-
Confidence 56652 24899999999999999999999987551 11110 0001111223345667888888887641
Q ss_pred hcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeeccc--CCCCCHHHHHHHHHH
Q 005034 251 TRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK--SFGGFAADVVAAIDQ 328 (718)
Q Consensus 251 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~--~~~~~~~~i~~ai~~ 328 (718)
.+.....+..+|||||||||+|..++.. ....+.||||+|+|+.+|+++. ........++.++++
T Consensus 73 --------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~ 139 (346)
T cd07475 73 --------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIED 139 (346)
T ss_pred --------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 1111144788999999999999875321 1135789999999999999973 455778889999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC----------------CCCCCCce
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS----------------MSSFSPWI 392 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~----------------~~~~~~~v 392 (718)
+++.+++|||||||...... .....+.++++.+.++|++||+||||+|..... .|...+++
T Consensus 140 a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 99999999999999875442 345788889999999999999999999875432 12234555
Q ss_pred EEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEE
Q 005034 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (718)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~ 472 (718)
|+||+++..
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 555554210
Q ss_pred eecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeee
Q 005034 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (718)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (718)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchh
Q 005034 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632 (718)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTS 632 (718)
......+.++.||+|||+.+ +++||||+|||.+|+++. .++.|..++|||
T Consensus 226 -------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS 275 (346)
T cd07475 226 -------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTV----------NDNTYGYMSGTS 275 (346)
T ss_pred -------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEec----------CCCceEeeCcHH
Confidence 01122345788999999986 699999999999999988 456889999999
Q ss_pred hhhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034 633 MAAPHIAGLAALIKQK----FPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (718)
Q Consensus 633 mAaP~VAG~aALl~q~----~p~ls~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 704 (718)
||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... .+...++.+.++|+|+||+.
T Consensus 276 ~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-------------~~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 276 MASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-------------EDTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-------------CCCCccCCccccCcchhcHH
Confidence 9999999999999997 78888876 788999999853211 12345677889999999999
Q ss_pred ccCC
Q 005034 705 ASLD 708 (718)
Q Consensus 705 ~Al~ 708 (718)
+||+
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=407.50 Aligned_cols=297 Identities=29% Similarity=0.422 Sum_probs=229.8
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||+|||++||+|.++.. ... ++.+.++|...... .
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~-~~~-----------------------~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFG-PGC-----------------------KVAGGYDFVGDDYD--G 54 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCC-CCc-----------------------eeccccccCCcccc--c
Confidence 5555 8999999999999999999999998654 001 11122222211000 0
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
.+...+...+.|..+|||||||||+|..++ .++.||||+|+|+.+|+++.........++++|++++++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 011122345567799999999999998643 35689999999999999987566778889999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+|||||||..... ....+.++++.+.++|+++|+||||+|.... ..|+..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~-----~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------ 188 (312)
T cd07489 126 DVITASLGGPSGW-----SEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------ 188 (312)
T ss_pred CEEEeCCCcCCCC-----CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------
Confidence 9999999986533 2366777888899999999999999987542 3456678888888742
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhC-C
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF-P 650 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p 650 (718)
+.||++||+.+ .+.||||+|||.+++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 34689999986 589999999999999988432 2258999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeec
Q 005034 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDA 715 (718)
Q Consensus 651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~ 715 (718)
.+++.+||++|++||.++...+.. .....++++.++|||+||+.+||+..-.++.
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~----------~~~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGT----------SALPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCC----------ccccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 999999999999999987654321 0111246778999999999999998766654
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=390.41 Aligned_cols=246 Identities=27% Similarity=0.321 Sum_probs=202.6
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+|||.+||+|.+... ......| ....
T Consensus 6 g~~g~gV~VaViDsGid~~hp~l~~~~~---~~~~~~~--------------------------------------~~~~ 44 (267)
T cd07476 6 GGGDPRITIAILDGPVDRTHPCFRGANL---TPLFTYA--------------------------------------AAAC 44 (267)
T ss_pred cCCCCCeEEEEeCCCcCCCChhhCCCcc---ccccCcc--------------------------------------ccCC
Confidence 7999999999999999999999997543 0000000 0012
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC-CHHHHHHHHHHHHHCCCCEEEEcC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDGVDIISLSI 341 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~-~~~~i~~ai~~a~~~g~~ViN~S~ 341 (718)
...|..+|||||||||+|+.. .++.||||+|+|+.++++.....+ ...++++||+||+++|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 334678999999999998753 235799999999999999875444 377899999999999999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 421 (718)
|..... ......+.++++.+.++|++||+||||+|.....+|+..++||+|||++.+
T Consensus 115 G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 171 (267)
T cd07476 115 GRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------- 171 (267)
T ss_pred CcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------
Confidence 975422 224567889999999999999999999998888889999999999996422
Q ss_pred CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (718)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~ 501 (718)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (718)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 581 (718)
+.++.||+||
T Consensus 172 ----------------------------------------------------------------------~~~~~~s~~g 181 (267)
T cd07476 172 ----------------------------------------------------------------------GLPLKFSNWG 181 (267)
T ss_pred ----------------------------------------------------------------------CCeeeecCCC
Confidence 1246789999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC----CCHHHH
Q 005034 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS----FSPSAI 657 (718)
Q Consensus 582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~i 657 (718)
+.. .||||+|||.+|+++. +++.|..++|||||||||||++|||+|++|. +++++|
T Consensus 182 ~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~v 241 (267)
T cd07476 182 ADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAV 241 (267)
T ss_pred CCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Confidence 864 4789999999999988 5678999999999999999999999999987 899999
Q ss_pred HHHHHhcccccccCC
Q 005034 658 ASALSTSATLYDKNG 672 (718)
Q Consensus 658 k~~L~~TA~~~~~~~ 672 (718)
|++|++||++++..+
T Consensus 242 k~~L~~tA~~~~~~~ 256 (267)
T cd07476 242 RRALLETATPCDPEA 256 (267)
T ss_pred HHHHHHhCccCCCcc
Confidence 999999999986543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=385.15 Aligned_cols=235 Identities=29% Similarity=0.443 Sum_probs=195.2
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
|+|||||||||.+||+|.++... .| ++. .....|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------~~-----------------------~~~--------------~~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------RL-----------------------FFA--------------GPGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------cc-----------------------cCC--------------CCCCCCCC
Confidence 78999999999999999875430 00 000 01234678
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC---CCCHHHHHHHHHHHHHCCCCEEEEcCCCCC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF---GGFAADVVAAIDQAAQDGVDIISLSITPNR 345 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~---~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~ 345 (718)
+|||||||||+|.... ..|+||+|+|+.+|++.... ..+..++++||+||+++|++|||||||...
T Consensus 37 ~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999998532 16999999999999998642 367788999999999999999999999642
Q ss_pred CCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCC
Q 005034 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424 (718)
Q Consensus 346 ~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (718)
...++++++.+.++|++||+||||+|... ..+|+..++||+||+++.+
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------- 154 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------- 154 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------
Confidence 25788899999999999999999999753 4678888999999986432
Q ss_pred CCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeC
Q 005034 425 TDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504 (718)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~ 504 (718)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCC
Q 005034 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (718)
Q Consensus 505 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~ 584 (718)
+.++.||++|+..
T Consensus 155 -------------------------------------------------------------------~~~~~~s~~g~~~ 167 (239)
T cd05561 155 -------------------------------------------------------------------GRLYREANRGAHV 167 (239)
T ss_pred -------------------------------------------------------------------CCccccCCCCCcc
Confidence 1356789999876
Q ss_pred CCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 585 EDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 585 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
||+|||.+|+++. +++.|..++|||||||||||++|||+|++| ++++|||++|++|
T Consensus 168 -------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~t 223 (239)
T cd05561 168 -------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAAT 223 (239)
T ss_pred -------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 8999999999976 566899999999999999999999999999 9999999999999
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCCccccc
Q 005034 665 ATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699 (718)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 699 (718)
|++++..+. +..||||
T Consensus 224 a~~~g~~~~-------------------d~~~G~G 239 (239)
T cd05561 224 AKDLGPPGR-------------------DPVFGYG 239 (239)
T ss_pred hhccCCCCc-------------------CCCcCCC
Confidence 998765544 6789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=392.86 Aligned_cols=269 Identities=23% Similarity=0.369 Sum_probs=197.4
Q ss_pred CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhh-----cCccC-----
Q 005034 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT-----RGIFN----- 256 (718)
Q Consensus 187 ~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~----- 256 (718)
|+|+|||||||||++||+|+++.+.++.+++. ++.+..+.++..+ +.+++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~--~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPG--NGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCC--CCccCCCCCcccc------ccCeeccCCcccccccccCcccccccc
Confidence 58999999999999999999988755555432 2222222222211 233444321100 00000
Q ss_pred -CCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCC
Q 005034 257 -SSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335 (718)
Q Consensus 257 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ 335 (718)
...+...+.+..+|||||||||+|..+++ .++.||||+|+|+.+|++.. +.....++++||+||+++|++
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCc
Confidence 01122334578899999999999986543 24689999999999999864 556778999999999999999
Q ss_pred EEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC---CCC--------CCCceEEEeeeccCCce
Q 005034 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSS--------FSPWIFTVGAASHDRIY 404 (718)
Q Consensus 336 ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~---~~~--------~~~~vitVgA~~~~~~~ 404 (718)
|||||||..... ....++++++.+.++|++||+||||+|.+... +|. ..+++|+||+++...
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-- 216 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-- 216 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--
Confidence 999999965322 23568889999999999999999999975322 222 235666666643210
Q ss_pred eeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchH
Q 005034 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (718)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 484 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccc
Q 005034 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (718)
Q Consensus 485 ~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 565 ~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
....++.||++|+.. |||+|||.+|+++. +++.|..++|||||||||||++||
T Consensus 217 -----~~~~~~~~Sn~G~~~------------vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl 269 (291)
T cd07483 217 -----ENNLVANFSNYGKKN------------VDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAAL 269 (291)
T ss_pred -----CcccccccCCCCCCc------------eEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHH
Confidence 011367899999743 49999999999997 566899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhccc
Q 005034 645 IKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~ 666 (718)
|+|++|+|++.|||++|++||+
T Consensus 270 ~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 270 IWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=392.88 Aligned_cols=289 Identities=37% Similarity=0.533 Sum_probs=217.3
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc---cCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI---FNSSQDYA 262 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~ 262 (718)
|+||+|||||+||+++||+|.+... .+.++...++|......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDA 56 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------------CCCceeeeeECccCCCCcccccccccccccC
Confidence 8999999999999999999986432 11233334444322100000 00000112
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||+|+|..++. ..+.||||+|+|+.+|++.....+...+++++|+|+++.+++|||||||
T Consensus 57 ~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 57 SAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 24568899999999999886442 3568999999999999998656688899999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC--CCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
..... ....+.++++.+.++|++||+||||+|..... .|+..+++|+||+++....
T Consensus 129 ~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 129 SSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 76432 34677888899999999999999999876544 4677899999999641100
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc-
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA- 579 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs- 579 (718)
........|++
T Consensus 187 --------------------------------------------------------------------~~~~~~~~~~s~ 198 (295)
T cd07474 187 --------------------------------------------------------------------AEADTVGPSSSR 198 (295)
T ss_pred --------------------------------------------------------------------CCCCceeccCCC
Confidence 00011233444
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
.|++.. .++||||+|||.+|++++... ++.|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 199 ~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 199 GPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 455554 699999999999999998432 25789999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 005034 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS 706 (718)
Q Consensus 660 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 706 (718)
+|++||++....+. ..+++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 99999998765432 112456899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=381.15 Aligned_cols=247 Identities=28% Similarity=0.360 Sum_probs=198.8
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC-CCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS-PFD 266 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~d 266 (718)
||+||||||||+++||+|..... ..+.++.+.++|.+. ... ..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------------~~~~~i~~~~~~~~~------------~~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------------FKNLRILGEYDFVDN------------SNNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------------ccCCceeeeecCccC------------CCCCCCC
Confidence 79999999999999999963222 112356666666543 112 357
Q ss_pred CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC--CCHHHHHHHHHHHHHCCCCEEEEcCCCC
Q 005034 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (718)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~~ 344 (718)
..+|||||||+|+|..+ +.+.||||+|+|+.+|+...... .....++.+++|+.+++++|||||||..
T Consensus 46 ~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~ 115 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT 115 (261)
T ss_pred CCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 88999999999999853 24579999999999998754222 3456789999999999999999999976
Q ss_pred CCCCC--------CCccccHHHHHHHHHHHCCCEEEEecCCCCCC---CCCCCCCCCceEEEeeeccCCceeeeEEeCCC
Q 005034 345 RRPPG--------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (718)
Q Consensus 345 ~~~~~--------~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 413 (718)
..... .......+.++++.+.++|++||+||||+|.. ...+|+..+++|+|||++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------ 183 (261)
T cd07493 116 TFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------ 183 (261)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------
Confidence 53321 11123567888999999999999999999987 45678889999999986422
Q ss_pred ceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHh
Q 005034 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (718)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCc
Q 005034 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (718)
Q Consensus 494 ~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (718)
+.
T Consensus 184 ------------------------------------------------------------------------------~~ 185 (261)
T cd07493 184 ------------------------------------------------------------------------------GN 185 (261)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCC
Q 005034 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653 (718)
Q Consensus 574 ~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls 653 (718)
++.||++||+.+ +++||||+|||.+|++.. ..+.|..++|||||||+|||++|||+|++|+|+
T Consensus 186 ~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt 248 (261)
T cd07493 186 KASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWT 248 (261)
T ss_pred CCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCC
Confidence 577899999986 799999999999999855 456889999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 005034 654 PSAIASALSTSAT 666 (718)
Q Consensus 654 ~~~ik~~L~~TA~ 666 (718)
+.|||++|++||+
T Consensus 249 ~~~i~~~l~~tA~ 261 (261)
T cd07493 249 NLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=380.51 Aligned_cols=247 Identities=33% Similarity=0.463 Sum_probs=197.3
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|||||+||+++||+|.++.. .|... .+...+++ ++.......+.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~--------~~~~~--------------~~~~~~~~---------~d~~~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR--------GWGGG--------------SADHDYNW---------FDPVGNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc--------ccCCC--------------Cccccccc---------ccCCCCCCCCC
Confidence 8999999999999999999997522 00000 00000000 11111234556
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH------------CC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ------------DG 333 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~------------~g 333 (718)
|..+|||||||||+|..... ...||||+|+|+.+|+++... +...+++++++|+++ .+
T Consensus 50 d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccC
Confidence 78899999999999875432 237999999999999998744 778899999999975 68
Q ss_pred CCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC---CCCCCCceEEEeeeccCCceeeeEEe
Q 005034 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSSFSPWIFTVGAASHDRIYTNSIIL 410 (718)
Q Consensus 334 ~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 410 (718)
++|||||||.... ....+..+++.+.++|++||+||||++..... +|+..+++|+||+++.+
T Consensus 120 ~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 120 PDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred CeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 9999999997643 23567788888999999999999999876443 67778999999986422
Q ss_pred CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (718)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 490 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (718)
Q Consensus 491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (718)
Q Consensus 571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 650 (718)
+.++.||++||... ++.||||+|||.+|+++. +++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~----------~~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAV----------PGGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEec----------CCCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 23578999999986 699999999999999998 556899999999999999999999999999
Q ss_pred C--CCHHHHHHHHHhccc
Q 005034 651 S--FSPSAIASALSTSAT 666 (718)
Q Consensus 651 ~--ls~~~ik~~L~~TA~ 666 (718)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=384.89 Aligned_cols=220 Identities=25% Similarity=0.372 Sum_probs=166.4
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
|+.+|||||||||+|+..++ ..+.||||+|+|+.+|+++...+. ...++++||++|++.+++|||||||.
T Consensus 183 d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~ 254 (412)
T cd04857 183 DSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGE 254 (412)
T ss_pred CCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCc
Confidence 67799999999999985332 356899999999999998753332 23579999999999999999999998
Q ss_pred CCCCCCCCccccHHHHHH-HHHHHCCCEEEEecCCCCCCCCCC--CC-CCCceEEEeeeccCCceeeeEEeCCCceEeee
Q 005034 344 NRRPPGIATFFNPIDMAL-LSAAKAGIFVVQAAGNTGPSPKSM--SS-FSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (718)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~-~~a~~~GilvV~AAGN~g~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 419 (718)
....... ..+.+++ +.+.++|++||+||||+|....+. |+ ..++||+|||+.........
T Consensus 255 ~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 255 ATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred CCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 6543211 1233333 334578999999999999876553 43 47899999996432210000
Q ss_pred ccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEE
Q 005034 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (718)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~v 499 (718)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred EEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc
Q 005034 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (718)
Q Consensus 500 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs 579 (718)
.....+.++.|||
T Consensus 322 -------------------------------------------------------------------~~~~~~~~~~fSS 334 (412)
T cd04857 322 -------------------------------------------------------------------REKLPGNQYTWSS 334 (412)
T ss_pred -------------------------------------------------------------------ccccCCccccccc
Confidence 0011245789999
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPS 655 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~ 655 (718)
|||+.+ |++||||+|||..|.|.-. . ....|..|+|||||||||||++|||++ ++|+++|.
T Consensus 335 rGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~ 399 (412)
T cd04857 335 RGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPY 399 (412)
T ss_pred cCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 999997 8999999999999988521 1 234789999999999999999999985 56899999
Q ss_pred HHHHHHHhccccc
Q 005034 656 AIASALSTSATLY 668 (718)
Q Consensus 656 ~ik~~L~~TA~~~ 668 (718)
+||++|++||+++
T Consensus 400 ~Vk~aL~~TA~~~ 412 (412)
T cd04857 400 SVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHhCccC
Confidence 9999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=372.40 Aligned_cols=258 Identities=35% Similarity=0.573 Sum_probs=207.6
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|+|||+||+++||+|.+.... .+. +. ..........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-------~~~-----------------------~~---------~~~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-------FAD-----------------------FV---------NTVNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-------ccc-----------------------cc---------ccccCCCCCC
Confidence 89999999999999999999986540 000 00 0001123455
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC----CCCEEEEcC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI 341 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~ViN~S~ 341 (718)
|..+|||||||+|+|..++. ...+.||||+|+|+.+|+++....+...+++++|+|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999986432 1346899999999999999986668889999999999998 999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeee
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 419 (718)
|..... ......+.++++.+.++|++||+||||++.... .+|+..+++|+|||++.+...
T Consensus 115 g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~--------------- 176 (264)
T cd07487 115 GAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH--------------- 176 (264)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC---------------
Confidence 986543 335678889999999999999999999998765 667788999999997543210
Q ss_pred ccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEE
Q 005034 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (718)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~v 499 (718)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc
Q 005034 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (718)
Q Consensus 500 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs 579 (718)
...++.||+
T Consensus 177 -----------------------------------------------------------------------~~~~~~~s~ 185 (264)
T cd07487 177 -----------------------------------------------------------------------DDGISYFSS 185 (264)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 013578999
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
+||+.+ ++.||||+|||.+|++..+..... ....++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 186 ~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~ 257 (264)
T cd07487 186 RGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKC 257 (264)
T ss_pred CCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHH
Confidence 999987 799999999999999986432111 112456889999999999999999999999999999999999
Q ss_pred HHHhccc
Q 005034 660 ALSTSAT 666 (718)
Q Consensus 660 ~L~~TA~ 666 (718)
+|++||+
T Consensus 258 ~L~~tA~ 264 (264)
T cd07487 258 ILRDTAT 264 (264)
T ss_pred HHHhhcC
Confidence 9999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=367.57 Aligned_cols=263 Identities=29% Similarity=0.405 Sum_probs=201.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|+|||||||++||+|.+......+.. ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 5666 7999999999999999999999998722011100 000000000
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
..........|..+|||||||||+|..++.....|. ..+.|+||+|+|+.+|++..........++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 000112334577899999999999976543222211 13457999999999999998666788889999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHC-------CCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKA-------GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
+|||||||.... ..+...+.++++.+.++ |++||+||||++.....+|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997642 12446677888888888 9999999999999887778889999999986422
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCC-ceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 646 (718)
+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 196 ----~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 196 ----DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ----CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 2356789999876 8999999 89888753321 124578999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHhc
Q 005034 647 QKFPS-FSPSAIASALSTS 664 (718)
Q Consensus 647 q~~p~-ls~~~ik~~L~~T 664 (718)
|++|. ++++|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=374.75 Aligned_cols=263 Identities=24% Similarity=0.227 Sum_probs=191.4
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
.+|||||||||.+||+|.+... .+ ..+. . ......|..
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~--------~~----------------------~~~~----------~--~~~~~~d~~ 38 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALA--------ED----------------------DLDS----------D--EPGWTADDL 38 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhc--------cc----------------------cccc----------c--CCCCcCCCC
Confidence 3799999999999999997644 00 0000 0 001146889
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC----CCCHHHHHHHHHHHHHCC---CCEEEEcC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF----GGFAADVVAAIDQAAQDG---VDIISLSI 341 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~~ViN~S~ 341 (718)
+|||||||||++..... ....|+||+|+|+.+|++...+ ..+..+++++|+|+++++ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 99999999998764321 2457999999999999998753 356778999999999864 48999999
Q ss_pred CCCCCCCCCCccccHHHHHHH-HHHHCCCEEEEecCCCCCCCCC------------CCCCCCceEEEeeeccCCceeeeE
Q 005034 342 TPNRRPPGIATFFNPIDMALL-SAAKAGIFVVQAAGNTGPSPKS------------MSSFSPWIFTVGAASHDRIYTNSI 408 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~-~a~~~GilvV~AAGN~g~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~ 408 (718)
|........ ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....+.
T Consensus 111 G~~~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 111 GSPLPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred CCCCCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 987543211 1124455553 3568999999999999987643 356688999999987654321110
Q ss_pred EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (718)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 488 (718)
.++
T Consensus 189 ~~~----------------------------------------------------------------------------- 191 (291)
T cd04847 189 RYS----------------------------------------------------------------------------- 191 (291)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (718)
Q Consensus 489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (718)
.
T Consensus 192 -------------------------------------------------------------------------------~ 192 (291)
T cd04847 192 -------------------------------------------------------------------------------A 192 (291)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC--------CccccCccccccCchhhhhHHHHH
Q 005034 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD--------SVEFQGESFAMMSGTSMAAPHIAG 640 (718)
Q Consensus 569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSmAaP~VAG 640 (718)
......+.||++||..+ +++||||+|||++|.+........ .....++.|..++|||||||||||
T Consensus 193 ~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag 265 (291)
T cd04847 193 VGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAAR 265 (291)
T ss_pred cccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHH
Confidence 00011234999999987 799999999999998865321100 011145689999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 641 LAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 641 ~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
++|||+|++|++++++||++|++||+
T Consensus 266 ~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 266 LAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=366.48 Aligned_cols=161 Identities=25% Similarity=0.304 Sum_probs=122.2
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
+++.. +|.. +++|+||+||||||||+..|| |..... .. +. .+..
T Consensus 8 l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~----------~~---------------~~----~~~~- 51 (298)
T cd07494 8 LNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY----------QV---------------RV----VLAP- 51 (298)
T ss_pred cChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc----------cc---------------ee----ecCC-
Confidence 44444 6665 899999999999999999888 664322 00 00 0000
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
.......|+.|||||||+++ .||||+|+|+.+|+++. ...+++++|+|
T Consensus 52 ----------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~ 99 (298)
T cd07494 52 ----------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKK 99 (298)
T ss_pred ----------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHH
Confidence 01123457889999999876 39999999999999875 45678999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCC------CCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeecc
Q 005034 329 AAQDGVDIISLSITPNRRPPG------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~ 400 (718)
|++++++|||||||....... .......++++++.+.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 100 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 100 AISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred HHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 999999999999998643221 1123456889999999999999999999974 57999999999999753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=362.22 Aligned_cols=229 Identities=32% Similarity=0.476 Sum_probs=193.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+||+++||+|.++.. ..++|... .
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~~~------------------------------~~~~~~~~-------------~ 57 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGRAI------------------------------WGADFVGG-------------D 57 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCCee------------------------------eeeecCCC-------------C
Confidence 6999999999999999999999987533 11111111 1
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC-----CCCEE
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----GVDII 337 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~~Vi 337 (718)
...|..+|||||||||+++. .||||+|+|+.+|+++....+..+.++.+++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 14578899999999999763 599999999999999986678889999999999987 48999
Q ss_pred EEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceE
Q 005034 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (718)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 416 (718)
|||||... ...+.++++.+.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35788888999999999999999999866 4667889999999986432
Q ss_pred eeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCC
Q 005034 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (718)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga 496 (718)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceec
Q 005034 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (718)
Q Consensus 497 ~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 576 (718)
+.++.
T Consensus 181 ---------------------------------------------------------------------------~~~~~ 185 (255)
T cd04077 181 ---------------------------------------------------------------------------DARAS 185 (255)
T ss_pred ---------------------------------------------------------------------------CCccC
Confidence 12577
Q ss_pred cccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHH
Q 005034 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656 (718)
Q Consensus 577 fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 656 (718)
||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++|
T Consensus 186 ~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 244 (255)
T cd04077 186 FSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAE 244 (255)
T ss_pred cccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 89999987 899999999998742 255889999999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q 005034 657 IASALSTSATL 667 (718)
Q Consensus 657 ik~~L~~TA~~ 667 (718)
||++|++||++
T Consensus 245 v~~~L~~tA~~ 255 (255)
T cd04077 245 VKARLLNLATK 255 (255)
T ss_pred HHHHHHhhccC
Confidence 99999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=363.10 Aligned_cols=292 Identities=27% Similarity=0.393 Sum_probs=235.0
Q ss_pred EEEEecc-eeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccC-----CCCCccCCC---------cccccccCCCCC
Q 005034 120 KLYSYHY-LINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT-----HTPQFLGLP---------QGAWIQEGGYET 184 (718)
Q Consensus 120 ~~~~~~~-~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~-----~~~~~~~~~---------~~~w~~~~~~~~ 184 (718)
..+.... +++++.-..+.+.+..++++|-+..++++..++.... +....|++. ...|...-..-.
T Consensus 137 ~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~ 216 (501)
T KOG1153|consen 137 NVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEID 216 (501)
T ss_pred cccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecc
Confidence 3444545 7888998999999999999999999999887765432 222223332 123333222345
Q ss_pred CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (718)
Q Consensus 185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (718)
.|+||...|+||||+..||||.++.. |.- .++ .....
T Consensus 217 aG~gvtaYv~DTGVni~H~dFegRa~---------wGa------~i~----------------------------~~~~~ 253 (501)
T KOG1153|consen 217 AGKGVTAYVLDTGVNIEHPDFEGRAI---------WGA------TIP----------------------------PKDGD 253 (501)
T ss_pred cCCCeEEEEeccccccccccccccee---------ccc------ccC----------------------------CCCcc
Confidence 89999999999999999999998754 311 110 01234
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC---------CCC
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---------GVD 335 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~~ 335 (718)
.|++||||||||+|+++. .|||.+++|+++||+++++.+..++++.++|++++. +..
T Consensus 254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s 319 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS 319 (501)
T ss_pred cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence 589999999999999885 599999999999999998899999999999999986 478
Q ss_pred EEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 336 ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
|.|||+|+.. +..++.|++.|.+.|+.|++||||+..+.+ +.|+.+.++|||||++..
T Consensus 320 v~NlSlGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------- 378 (501)
T KOG1153|consen 320 VANLSLGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------- 378 (501)
T ss_pred EEEEecCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------
Confidence 9999999864 458999999999999999999999988764 567889999999996421
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+++
T Consensus 379 -----------------------------------------------------------------------------D~i 381 (501)
T KOG1153|consen 379 -----------------------------------------------------------------------------DTI 381 (501)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 357
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC---
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS--- 651 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--- 651 (718)
+.||+||+++ ||.|||.+|.|+|... .+.-.++||||||+|||||++|..+..+|.
T Consensus 382 A~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~ 440 (501)
T KOG1153|consen 382 AFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPLPDS 440 (501)
T ss_pred hhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCCChH
Confidence 9999999999 8999999999999643 235678999999999999999999998883
Q ss_pred ------CCHHHHHHHHHhcccc
Q 005034 652 ------FSPSAIASALSTSATL 667 (718)
Q Consensus 652 ------ls~~~ik~~L~~TA~~ 667 (718)
.|+.++|..++.-..+
T Consensus 441 ~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 441 SFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred HhhhccCChHHhhhhhhccccc
Confidence 4899999988877654
|
|
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=359.65 Aligned_cols=245 Identities=34% Similarity=0.491 Sum_probs=203.7
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecch
Q 005034 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (718)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (718)
.++.+. +|.. + +|+||+|+|||+||+++||+|..... ...+++.+
T Consensus 15 ~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------------------------~~~~~~~~ 59 (260)
T cd07484 15 QIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------------------------VLGYDFVD 59 (260)
T ss_pred ccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCCc-----------------------------ccceeccC
Confidence 344444 7876 3 99999999999999999999854322 11112211
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHH
Q 005034 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (718)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~ 327 (718)
....+.|..+|||||||||++...++ .++.|+||+|+|+.+++++....+...++.++|+
T Consensus 60 ------------~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~ 119 (260)
T cd07484 60 ------------NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIR 119 (260)
T ss_pred ------------CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHH
Confidence 11235578899999999999875432 3468999999999999998766688899999999
Q ss_pred HHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 328 ~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
++++.+++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 120 ~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------ 186 (260)
T cd07484 120 YAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------ 186 (260)
T ss_pred HHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------
Confidence 999999999999999754 3467888999999999999999999999888999999999999986432
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 647 (718)
+.++.||++|+.. |++|||.+|++.. ..+.|..++|||||||+|||++|||++
T Consensus 187 ----~~~~~~s~~g~~~-------------~~~apG~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~Al~~~ 239 (260)
T cd07484 187 ----DKRASFSNYGKWV-------------DVSAPGGGILSTT----------PDGDYAYMSGTSMATPHVAGVAALLYS 239 (260)
T ss_pred ----CCcCCcCCCCCCc-------------eEEeCCCCcEeec----------CCCCEEEeeeHHHHHHHHHHHHHHHHh
Confidence 1246789999876 8999999999987 456899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhccccc
Q 005034 648 KFPSFSPSAIASALSTSATLY 668 (718)
Q Consensus 648 ~~p~ls~~~ik~~L~~TA~~~ 668 (718)
++| +++++||++|++||+++
T Consensus 240 ~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 240 QGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cCC-CCHHHHHHHHHHhCccC
Confidence 999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=358.11 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=191.3
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||+|||++||+|.+... .| .+|... .........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~--------~~----------------------~~~~~~--------~~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA--------QW----------------------ADFDEN--------RRISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC--------Cc----------------------eeccCC--------CCCCCCCCCCC
Confidence 79999999999999999987543 11 011100 00112344577
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||+|+.++ ....||||+++|+.+|++.... ....+++++|+|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred CCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 89999999999998642 2457999999999999998743 7889999999999999999999999976432
Q ss_pred CCCCccccHHHHHHHHHHH-CCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCC
Q 005034 348 PGIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (718)
...+.++++.+.+ +|++||+||||++.....+|+..+++|+|||++.+.....+...+
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g--------------- 171 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFG--------------- 171 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCc---------------
Confidence 3456666666665 699999999999998888899999999999987543311100000
Q ss_pred ceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
T Consensus 172 -------------------------------------------------------------------------------- 171 (254)
T cd07490 172 -------------------------------------------------------------------------------- 171 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCC
Q 005034 507 VIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPED 586 (718)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~ 586 (718)
.......+.+|....
T Consensus 172 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 186 (254)
T cd07490 172 -----------------------------------------------------------------SSGASLVSAPDSPPD 186 (254)
T ss_pred -----------------------------------------------------------------ccccccccCCCCCcc
Confidence 001112333443321
Q ss_pred CCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 587 SFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 587 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
...||||+|||.+|+++..... ..+.|..++|||||||+|||++|||+|++|++++.|||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999652211 4568999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=363.09 Aligned_cols=204 Identities=30% Similarity=0.404 Sum_probs=168.7
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH----------HC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------QD 332 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~----------~~ 332 (718)
...+..+|||||||||+|..+++ .++.||||+|+|+.+|+++.. +++.+++++|++|++ .+
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 34567899999999999986532 356899999999999999874 448899999999998 45
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+++|||||||..... ...+.++++.+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 137 ~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 200 (285)
T cd07496 137 PAKVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------- 200 (285)
T ss_pred CCeEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------
Confidence 789999999986431 36788899999999999999999999876 6678889999999986432
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC-----CccccCccccccCchhhhhHHHHHHHHHHH
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD-----SVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 646 (718)
+.++.||++|+.. ||+|||.+|.++....... ........|..++|||||||+|||++|||+
T Consensus 201 ~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~ 267 (285)
T cd07496 201 GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMK 267 (285)
T ss_pred CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHH
Confidence 2357899999987 8999999999887543210 112234578899999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhc
Q 005034 647 QKFPSFSPSAIASALSTS 664 (718)
Q Consensus 647 q~~p~ls~~~ik~~L~~T 664 (718)
|++|+|++++||++|++|
T Consensus 268 ~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 268 SVNPSLTPAQIESLLQST 285 (285)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999876
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=365.72 Aligned_cols=148 Identities=32% Similarity=0.470 Sum_probs=112.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+|||.+||+|.+... ...+|.+ ..
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------------~~~~~~~-------------~~ 40 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------------TTKSFVG-------------GE 40 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------------cCcccCC-------------CC
Confidence 6999999999999999999999997543 0011111 12
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+|+... +...||||+|+|+.+|++..........++++|+|+++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987543 2346999999999999998767788888999999999999999999999
Q ss_pred CCCCC------CCCCccccHHHHHHHHH---------------HHCCCEEEEecCCCCCCC
Q 005034 343 PNRRP------PGIATFFNPIDMALLSA---------------AKAGIFVVQAAGNTGPSP 382 (718)
Q Consensus 343 ~~~~~------~~~~~~~~~~~~a~~~a---------------~~~GilvV~AAGN~g~~~ 382 (718)
..... .....+...++.+.+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 85411 11122233444444444 789999999999998754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=365.25 Aligned_cols=278 Identities=27% Similarity=0.359 Sum_probs=202.3
Q ss_pred CCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 005034 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (718)
Q Consensus 182 ~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 261 (718)
.+++|+||+|||||+||+++||+|.+... . ...+..+++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~--------~-----------~~~~~~~~~~~~~~~~~-------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF--------N-----------KTNLFHRKIVRYDSLSD-------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc--------C-----------cCccCcccEEEeeccCC--------------
Confidence 47999999999999999999999987532 0 00112233333332221
Q ss_pred CCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-CCHHHHHHHHHHHHHCCCCEEEEc
Q 005034 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLS 340 (718)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~ViN~S 340 (718)
...|..+|||||||||+|..++... ..++.||||+|+|+.+|++..... ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227889999999999998654321 115689999999999999887442 456678899999999999999999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHH-H-CCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034 341 ITPNRRPPGIATFFNPIDMALLSAA-K-AGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (718)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~-~-~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 415 (718)
||..... ....+.+++..+. + +|++||+||||++.... ..|+..+++|+|||++.......
T Consensus 123 ~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------- 188 (293)
T cd04842 123 WGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------- 188 (293)
T ss_pred CCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------
Confidence 9986532 1233444444333 3 79999999999998765 67788999999999875432100
Q ss_pred EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 495 (718)
..|..
T Consensus 189 -----------------------------------~~~~~---------------------------------------- 193 (293)
T cd04842 189 -----------------------------------EGGLG---------------------------------------- 193 (293)
T ss_pred -----------------------------------ccccc----------------------------------------
Confidence 00000
Q ss_pred CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (718)
Q Consensus 496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 575 (718)
.....+.++
T Consensus 194 -----------------------------------------------------------------------~~~~~~~~~ 202 (293)
T cd04842 194 -----------------------------------------------------------------------QSDNSDTVA 202 (293)
T ss_pred -----------------------------------------------------------------------ccCCCCccc
Confidence 011224578
Q ss_pred ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-----
Q 005034 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----- 650 (718)
Q Consensus 576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----- 650 (718)
.||++||+.+ ++.||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 203 ~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 203 SFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 9999999986 7999999999999999975420 01111455889999999999999999999999865
Q ss_pred ---CCCHHHHHHHHHhccc
Q 005034 651 ---SFSPSAIASALSTSAT 666 (718)
Q Consensus 651 ---~ls~~~ik~~L~~TA~ 666 (718)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 5566799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=353.99 Aligned_cols=241 Identities=31% Similarity=0.445 Sum_probs=193.9
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
|+|||||+||+++||+|.+... ....|+ +. .+.....|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~-----~~~~~~-----------------------~~------------~~~~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK-----LVPGWN-----------------------FV------------SNNDPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC-----ccCCcc-----------------------cc------------CCCCCCCCCC
Confidence 6899999999999999997421 111111 10 0112345788
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~ 348 (718)
+|||||||||+|+.++. .++.||||+|+|+.+|++.........++.++++|+++.+++|||||||.....
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 111 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST- 111 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC-
Confidence 99999999999986432 346899999999999999876567888999999999999999999999976543
Q ss_pred CCCccccHHHHHHHHHHH-CCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCc
Q 005034 349 GIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK 427 (718)
Q Consensus 349 ~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (718)
..+...++++++.++. +|++||+||||+|.....+|+..+++|+||+++..
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 163 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------- 163 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------
Confidence 2345788888888888 99999999999999877788899999999996432
Q ss_pred eEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 428 MYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCC
Q 005034 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDS 587 (718)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~ 587 (718)
+.+++||++||..
T Consensus 164 ----------------------------------------------------------------~~~~~~s~~g~~~--- 176 (242)
T cd07498 164 ----------------------------------------------------------------DARASYSNYGNYV--- 176 (242)
T ss_pred ----------------------------------------------------------------CCccCcCCCCCCe---
Confidence 1357889999987
Q ss_pred CCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 588 FLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 588 ~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
|++|||.++++....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|+.|
T Consensus 177 ----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999888533211 111245688899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=358.10 Aligned_cols=247 Identities=22% Similarity=0.244 Sum_probs=179.3
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|+... .+|+||+|+|||+|||.+||||.++... .+
T Consensus 7 aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~-------~~---------------------------------- 42 (277)
T cd04843 7 AWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGIT-------LI---------------------------------- 42 (277)
T ss_pred HHHhcC---CCCCcEEEEEecCCCCCCChhhcccccc-------cc----------------------------------
Confidence 787742 4589999999999999999999976430 00
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--- 331 (718)
. ...+.|.++|||||||||+|..+. .++.||||+|+|+.+|+++ .++++++|.||++
T Consensus 43 -~----~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~ 102 (277)
T cd04843 43 -S----GLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLS 102 (277)
T ss_pred -C----CCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccC
Confidence 0 011457789999999999997431 2467999999999999986 2356677777776
Q ss_pred -CCCCEEEEcCCCCCCCCCC--CccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC------------CC-CCCceEEE
Q 005034 332 -DGVDIISLSITPNRRPPGI--ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM------------SS-FSPWIFTV 395 (718)
Q Consensus 332 -~g~~ViN~S~G~~~~~~~~--~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~------------~~-~~~~vitV 395 (718)
.++.+||||||........ ..+...+.++++++.++|+++|+||||++...... |. ..+++|+|
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~V 182 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMV 182 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEE
Confidence 3466799999986432110 12345667789999999999999999998753211 11 12456666
Q ss_pred eeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeec
Q 005034 396 GAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSI 475 (718)
Q Consensus 396 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~ 475 (718)
||++.+.
T Consensus 183 gA~~~~~------------------------------------------------------------------------- 189 (277)
T cd04843 183 GAGSSTT------------------------------------------------------------------------- 189 (277)
T ss_pred EeccCCC-------------------------------------------------------------------------
Confidence 6643210
Q ss_pred ccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeece
Q 005034 476 RFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGA 555 (718)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 555 (718)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhh
Q 005034 556 VACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635 (718)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAa 635 (718)
...++.||++||.. ||+|||.+|+++.............+.|..++||||||
T Consensus 190 ---------------~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~Aa 241 (277)
T cd04843 190 ---------------GHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSAS 241 (277)
T ss_pred ---------------CCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhh
Confidence 01268899999976 89999999999985433211112233457899999999
Q ss_pred HHHHHHHHHHHH----h-CCCCCHHHHHHHHHhccc
Q 005034 636 PHIAGLAALIKQ----K-FPSFSPSAIASALSTSAT 666 (718)
Q Consensus 636 P~VAG~aALl~q----~-~p~ls~~~ik~~L~~TA~ 666 (718)
|||||++|||++ + +|+|+++|||++|++|+.
T Consensus 242 P~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 242 PIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999975 4 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=349.06 Aligned_cols=253 Identities=30% Similarity=0.406 Sum_probs=194.2
Q ss_pred CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCC
Q 005034 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266 (718)
Q Consensus 187 ~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d 266 (718)
+||+|||||||||++||+|.++.+.... ...+.+....+..+... ...++| .....++.|
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~------------~~~~~~~~d 61 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG--EIPGNGIDDDGNGYVDD------IYGWNF------------VNNDNDPMD 61 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc--cccccCcccCCCCcccC------CCcccc------------cCCCCCCCC
Confidence 6899999999999999999987651110 00111111111111100 001111 112345568
Q ss_pred CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCC
Q 005034 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR 346 (718)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~ 346 (718)
..+|||||||||+|..+++ ..+.|+||+|+|+.+|++.....+...+++++|+++++.+++|||+|||....
T Consensus 62 ~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 62 DNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999986433 34579999999999999988666888999999999999999999999997642
Q ss_pred CCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC---CCCCCCC--CCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSF--SPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (718)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~---~~~~~~~--~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 421 (718)
...+.+++..+.++|++||+||||++.. ...+|+. .+++|+||+++..
T Consensus 134 -------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 134 -------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred -------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 4678888889999999999999999886 2345543 5788999885422
Q ss_pred CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (718)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~ 501 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (718)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 581 (718)
+.++.||++|
T Consensus 187 ----------------------------------------------------------------------~~~~~~s~~g 196 (259)
T cd07473 187 ----------------------------------------------------------------------DALASFSNYG 196 (259)
T ss_pred ----------------------------------------------------------------------CCcCcccCCC
Confidence 2345689988
Q ss_pred CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005034 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (718)
Q Consensus 582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L 661 (718)
|.. ||++|||.++++.. ..+.|..++|||||||+|||++|||+|++|.+++++||++|
T Consensus 197 ~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L 254 (259)
T cd07473 197 KKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAI 254 (259)
T ss_pred CCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 754 49999999999976 56689999999999999999999999999999999999999
Q ss_pred Hhccc
Q 005034 662 STSAT 666 (718)
Q Consensus 662 ~~TA~ 666 (718)
++||+
T Consensus 255 ~~tA~ 259 (259)
T cd07473 255 LSSAD 259 (259)
T ss_pred HHhCC
Confidence 99985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=342.03 Aligned_cols=227 Identities=35% Similarity=0.563 Sum_probs=189.1
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||+||+.+||+|.+... ...+|... ......|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------------------------~~~~~~~~-----------~~~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------------------------GGANFTGD-----------DNNDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------------------------CcccccCC-----------CCCCCCCC
Confidence 79999999999999999987543 00111110 00234567
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||++..+. ..+.|+||+|+|+.+|+++....+...+++++++|+++.+++|||||||....
T Consensus 40 ~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~- 109 (229)
T cd07477 40 NGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD- 109 (229)
T ss_pred CCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC-
Confidence 89999999999997543 24679999999999999988666788999999999999999999999997532
Q ss_pred CCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC--CCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCC
Q 005034 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (718)
...+..+++.+.++|++||+||||++...... |+..+++|+||+++.+
T Consensus 110 ------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 110 ------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 35678888899999999999999999876664 8889999999996532
Q ss_pred CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCC
Q 005034 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (718)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~ 505 (718)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCC
Q 005034 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPE 585 (718)
Q Consensus 506 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~ 585 (718)
+.++.||++|+..
T Consensus 160 ------------------------------------------------------------------~~~~~~s~~g~~~- 172 (229)
T cd07477 160 ------------------------------------------------------------------NNRASFSSTGPEV- 172 (229)
T ss_pred ------------------------------------------------------------------CCcCCccCCCCCc-
Confidence 1245689999876
Q ss_pred CCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 586 ~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
|++|||.+|+++. ..+.|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 173 ------------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 ------------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999988 55688999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=346.42 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=121.5
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
+++|+|||||||||++||+|.++.. ....|..... +.........
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~-----~~~~~~~~~~------------------------------~~~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII-----GGKSFSPYEG------------------------------DGNKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc-----cCCCCCCCCC------------------------------CcccCCCCCC
Confidence 6899999999999999999998643 0001110000 0000011224
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC------CCCHHHHHHHHHHHHHCCCCEEEE
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF------GGFAADVVAAIDQAAQDGVDIISL 339 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~~ViN~ 339 (718)
|..+|||||||||+ |+||+|+|+.+|+++... ......+++||+||+++|++||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 68899999999995 799999999999998644 245678999999999999999999
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-C--CCCCCCceEEEeeecc
Q 005034 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-S--MSSFSPWIFTVGAASH 400 (718)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~--~~~~~~~vitVgA~~~ 400 (718)
|||....... ......+++++++|.++|++||+||||+|.... . +|+..++||+|||++.
T Consensus 109 S~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 109 SWTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 9997643211 123578899999999999999999999998764 3 3566899999999754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=352.19 Aligned_cols=155 Identities=30% Similarity=0.379 Sum_probs=111.3
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
.|+||||||||+++||+|.+....... .+ ... ..+... ......+.....|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~----~~----~~~---------------~~~~~~-----~~~~~~~~~~~~d~ 52 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK----NL----VPK---------------GGYDGK-----EAGETGDINDIVDK 52 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc----cc----ccC---------------CCcCCc-----cccccCCCCcCCCC
Confidence 389999999999999999975430000 00 000 000000 00001112344678
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||+|+|..+ ..||||+|+|+.+|+++........+++++|+|+++++++|||||||.....
T Consensus 53 ~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 53 LGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 8999999999998742 2499999999999999875556889999999999999999999999975433
Q ss_pred CCC----CccccHHHHHHHHHHHCCCEEEEecCCCCCCC
Q 005034 348 PGI----ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP 382 (718)
Q Consensus 348 ~~~----~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~ 382 (718)
... ....+.+.++++.+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 211 22345678888889999999999999999754
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=355.01 Aligned_cols=276 Identities=35% Similarity=0.563 Sum_probs=210.1
Q ss_pred EEEEEccccCCCCCCCc-CCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 190 VIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 190 ~VaVIDtGid~~Hp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
+|||||+|||++||+|. ++.. ..++.+.+.|.+.. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-------------------------WSKVPGGYNFVDGN---------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-------------------------EEEEEEEEETTTTB---------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCCcc-------------------------cccccceeeccCCC---------CCcCccccCC
Confidence 69999999999999999 4322 11233444554431 1124456788
Q ss_pred CCccccccccccCC-CCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH-HCCCCEEEEcCCCCCC
Q 005034 269 GHGSHTASVAAGNH-GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRR 346 (718)
Q Consensus 269 gHGThVAGiiag~~-~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~ViN~S~G~~~~ 346 (718)
+|||||||||+|.. .++ ....|+||+|+|+.+|++.... ....+++++|++++ +.+++|||||||....
T Consensus 47 ~HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 47 GHGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp SHHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred Cccchhhhhccccccccc--------cccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccc
Confidence 99999999999985 221 3458999999999999987744 77888999999999 8899999999987321
Q ss_pred CCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCC
Q 005034 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAP 423 (718)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (718)
.. .....+.+..+++.+.++|+++|+||||++.... ..|+..+++|+||+++..
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 118 PP-DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SS-HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc-ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 1223456777888899999999999999988664 367777899999986422
Q ss_pred CCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEe
Q 005034 424 GTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYM 503 (718)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~ 503 (718)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCC
Q 005034 504 DPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (718)
Q Consensus 504 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt 583 (718)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 124778999766
Q ss_pred CCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 005034 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663 (718)
Q Consensus 584 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~ 663 (718)
... +++||||+|||.+|++..+... ...|..++|||||||+|||++|||+|++|++++.+||.+|++
T Consensus 187 ~~~------~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SDD------GRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ETT------CTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ccc------cccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 532 7999999999999988874321 135788999999999999999999999999999999999999
Q ss_pred cccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 664 SATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 664 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||.++.... ....+..+|||++|+.+||+
T Consensus 254 ta~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 999887221 12335678999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=333.09 Aligned_cols=151 Identities=25% Similarity=0.237 Sum_probs=118.5
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||||||++||+|.++.. .+. .+... +...+.....|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------~~~----------------------~~~~~-------~~~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------DGE----------------------VTIDL-------EIIVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------ccc----------------------ccccc-------ccccCCCCCCCC
Confidence 79999999999999999998654 000 00000 000112344578
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||+ +.+|+++|+.+|+++....+...++++||+|+++++++|||||||.....
T Consensus 44 ~gHGT~vAgiia------------------~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 44 DGHGTACAGIIK------------------KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred CCcHHHHHHHHH------------------ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 899999999997 44699999999999886668888999999999999999999999976432
Q ss_pred CCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeec
Q 005034 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~ 399 (718)
....+.++++++.++|+++|+||||++.... +|+..++||+||+.+
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~ 151 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDT 151 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecC
Confidence 2357788888999999999999999987543 478889999999853
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=345.63 Aligned_cols=249 Identities=24% Similarity=0.271 Sum_probs=178.7
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|+|||||||++||+|.++.. ....| +|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~-----~~~~~-----------------------~~~~~------ 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYD-----PEASY-----------------------DFNDN------ 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccc-----ccccc-----------------------cccCC------
Confidence 6665 7999999999999999999999997643 00111 11110
Q ss_pred cCCCCCCCCC--CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC
Q 005034 255 FNSSQDYASP--FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (718)
Q Consensus 255 ~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (718)
. ....+ .|..+|||||||||+|..+.. .+..||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 73 ---~-~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ---D-PDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ---C-CCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 0 00111 277899999999999986432 145799999999999999763 233344555555544
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHH-----CCCEEEEecCCCCCCCC----CCCCCCCceEEEeeeccCCc
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPK----SMSSFSPWIFTVGAASHDRI 403 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~g~~~~----~~~~~~~~vitVgA~~~~~~ 403 (718)
.++|||||||..............+.++++.+.. +|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999765432111223344455555543 69999999999998322 122457889999986432
Q ss_pred eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (718)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 483 (718)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (718)
Q Consensus 484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (718)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCc-------eeecccCCCCCCccccCccccccCchhhhhH
Q 005034 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS-------IWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (718)
Q Consensus 564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 636 (718)
+.++.||++|+.. +++|||.. |+++.... ..+.|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 2356789999887 79999887 66665321 1256789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 637 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=334.24 Aligned_cols=247 Identities=38% Similarity=0.467 Sum_probs=190.4
Q ss_pred CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (718)
Q Consensus 185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (718)
+|+||+|||||+||+.+||+|.+........ .+ .........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~---~~-----------------------------------~~~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYY---VA-----------------------------------VNDAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccc---cc-----------------------------------cccccCCCC
Confidence 6999999999999999999999865400000 00 000001234
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
.|..+|||||||+|+|+.++ ..+.|+||+|+|+.+|+++... ......+.++++++.+.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 56789999999999998643 3568999999999999998754 4667788999999999999999999998
Q ss_pred CCCCCCC--------CccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC---------CCCCCceEEEeeeccCCceee
Q 005034 344 NRRPPGI--------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM---------SSFSPWIFTVGAASHDRIYTN 406 (718)
Q Consensus 344 ~~~~~~~--------~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~---------~~~~~~vitVgA~~~~~~~~~ 406 (718)
....... ......+..+++.+.++|++||+||||++...... ++..+++|+||+++.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~--- 190 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGT--- 190 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCC---
Confidence 7533210 12456778888899999999999999998754333 234578888888754321
Q ss_pred eEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHH
Q 005034 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486 (718)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 486 (718)
T Consensus 191 -------------------------------------------------------------------------------- 190 (267)
T cd04848 191 -------------------------------------------------------------------------------- 190 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccc
Q 005034 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKAN 566 (718)
Q Consensus 487 ~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (718)
T Consensus 191 -------------------------------------------------------------------------------- 190 (267)
T cd04848 191 -------------------------------------------------------------------------------- 190 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceec--cccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 567 FSNSAPKIMY--YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 567 ~~~~~~~~a~--fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
... ||++|+... .++++|||.+|+++... ....|..++|||||||+|||++||
T Consensus 191 -------~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al 245 (267)
T cd04848 191 -------IASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAAL 245 (267)
T ss_pred -------cccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHH
Confidence 122 477776542 33799999999998732 145788999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhccc
Q 005034 645 IKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~ 666 (718)
|+|++|+++++|||++|++||+
T Consensus 246 ~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 246 LAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999995
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=308.50 Aligned_cols=266 Identities=23% Similarity=0.346 Sum_probs=208.0
Q ss_pred CCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 005034 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (718)
Q Consensus 180 ~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 259 (718)
+..|+||++|+|||.|||+.-+||-|+.-- ....|. ++
T Consensus 194 Wk~GyTGa~VkvAiFDTGl~~~HPHFrnvK------ERTNWT-------------------------NE----------- 231 (1033)
T KOG4266|consen 194 WKKGYTGAKVKVAIFDTGLRADHPHFRNVK------ERTNWT-------------------------NE----------- 231 (1033)
T ss_pred HhccccCCceEEEEeecccccCCccccchh------hhcCCc-------------------------Cc-----------
Confidence 345999999999999999999999998521 111221 11
Q ss_pred CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 005034 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (718)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~ 339 (718)
..-.|..||||.|||+|||.. ...|.||+++|++.|||.+..-.+.+.+++|++||+....+|+|+
T Consensus 232 --~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNL 297 (1033)
T KOG4266|consen 232 --DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNL 297 (1033)
T ss_pred --cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEee
Confidence 233478899999999999984 357999999999999999866689999999999999999999999
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCC--CCCceEEEeeeccCCceeeeEEeCCCceEe
Q 005034 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTIS 417 (718)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~ 417 (718)
|.|++. +...++-+-+-.....+|++|.|+||+|+-..+..+ .-..||.||..
T Consensus 298 SIGGPD------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------- 352 (1033)
T KOG4266|consen 298 SIGGPD------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------- 352 (1033)
T ss_pred ccCCcc------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------
Confidence 999863 334455555556788999999999999986544432 23345555542
Q ss_pred eeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCc
Q 005034 418 GVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAA 497 (718)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 497 (718)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecc
Q 005034 498 GIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYY 577 (718)
Q Consensus 498 ~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 577 (718)
.-.+.++.|
T Consensus 353 -----------------------------------------------------------------------dfdD~IA~F 361 (1033)
T KOG4266|consen 353 -----------------------------------------------------------------------DFDDHIASF 361 (1033)
T ss_pred -----------------------------------------------------------------------cccchhhhh
Confidence 223568999
Q ss_pred ccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCC
Q 005034 578 SARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFS 653 (718)
Q Consensus 578 Ss~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls 653 (718)
||||-+.-. -.-.=||+||||++-|.+|.... -..+...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~----------v~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSK----------VSTGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceee-cCCcccccCCceEeeccccccCc----------ccccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 999986421 11223799999999999998876 344778999999999999999999966 333478
Q ss_pred HHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 654 PSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 654 ~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
|+-+|++|+.+|.+++..+ -++||+|++|+.++.+
T Consensus 431 PASmKQaLiegA~kLpg~N--------------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPN--------------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCc--------------------hhhccCcchhHHHHHH
Confidence 9999999999999987543 3689999999988865
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=286.63 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHH--HHCCCCEEEEcC
Q 005034 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA--AQDGVDIISLSI 341 (718)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~~ViN~S~ 341 (718)
..|.++|||||||||+|.. |++|+++|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3478999999999999873 6679999987555322 223355677777 567999999999
Q ss_pred CCCCCCCCC--CccccHHHHHHHHHHHC-CCEEEEecCCCCCCC-----CCCCCCCCceEEEeeeccC
Q 005034 342 TPNRRPPGI--ATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-----KSMSSFSPWIFTVGAASHD 401 (718)
Q Consensus 342 G~~~~~~~~--~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~-----~~~~~~~~~vitVgA~~~~ 401 (718)
|........ ..-...+..+++.+.++ |+++|+||||+|... ...|+..+++|+|||++..
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~ 161 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRN 161 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCC
Confidence 976543200 01124567777776666 999999999999853 2345668899999998654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=272.98 Aligned_cols=124 Identities=35% Similarity=0.521 Sum_probs=103.1
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH-HCCCCEEEEcC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSI 341 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~ViN~S~ 341 (718)
...+..+||||||++|++..... ...|+||+++|+.+++...........+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34467899999999999886432 126999999999999998755577889999999999 89999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCCC---CCCCCCCceEEEeeecc
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASH 400 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~ 400 (718)
|..... ....+.+++..+.++ |++||+||||.+.... ..|+..+++|+||+++.
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 986432 235677777788887 9999999999998876 57888999999999754
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=299.93 Aligned_cols=241 Identities=24% Similarity=0.366 Sum_probs=184.7
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC--CCHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
+...||||||||++|++... ....|+||+|+|+.+++.+...+ -+-..+.+|+..++++.+||||||+|-
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred cCCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 34579999999999997643 24569999999999999886544 233568999999999999999999998
Q ss_pred CCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCC---CCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 344 NRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~---~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
....++. -+.++.+-+...+.|+++|+||||.|+...+++++ ...||.|||.-.......
T Consensus 380 ~a~~pn~---GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a-------------- 442 (1304)
T KOG1114|consen 380 DAHLPNS---GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA-------------- 442 (1304)
T ss_pred cCCCCCc---chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh--------------
Confidence 7766544 34454444556688999999999999988776654 568999998532211100
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
.|.
T Consensus 443 -------~y~---------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 443 -------EYS---------------------------------------------------------------------- 445 (1304)
T ss_pred -------hhh----------------------------------------------------------------------
Confidence 000
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
........+..+|||
T Consensus 446 -----------------------------------------------------------------~~e~vp~~~YtWsSR 460 (1304)
T KOG1114|consen 446 -----------------------------------------------------------------VREPVPSNPYTWSSR 460 (1304)
T ss_pred -----------------------------------------------------------------hhccCCCCccccccC
Confidence 001112347889999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSA 656 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ 656 (718)
||+.| |-+--.|+|||+-|.|.-. +.-..-+.|+|||||+|+++|.+|||++ .+-.+||--
T Consensus 461 gP~~D-------G~lGVsi~APggAiAsVP~--------~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpys 525 (1304)
T KOG1114|consen 461 GPCLD-------GDLGVSISAPGGAIASVPQ--------YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYS 525 (1304)
T ss_pred CCCcC-------CCcceEEecCCccccCCch--------hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHH
Confidence 99998 7889999999999977521 1222446799999999999999999965 556799999
Q ss_pred HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 657 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||.+|++||.+++... .+.+|.|++++.+|.+
T Consensus 526 VrrAlenTa~~l~~id--------------------~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 526 VRRALENTATKLGDID--------------------SFAQGQGMLQVDKAYE 557 (1304)
T ss_pred HHHHHHhcccccCccc--------------------hhccCcceeehhHHHH
Confidence 9999999999986542 4789999999999975
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=237.74 Aligned_cols=247 Identities=32% Similarity=0.490 Sum_probs=185.7
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|+|||+||+..||+|.+..... ++|... ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------------~~~~~~-----------~~~ 176 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------------GDFVDG-----------DPE 176 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc------------------------------cccccC-----------CCC
Confidence 689999999999999999999999865400 111110 001
Q ss_pred -CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccC-CCCCHHHHHHHHHHHHHCC--CCEEE
Q 005034 263 -SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS-FGGFAADVVAAIDQAAQDG--VDIIS 338 (718)
Q Consensus 263 -~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~~ViN 338 (718)
...|..+|||||+|++++.... +.....|++|+++++.++++... +.+...+++++|+++++.+ +++||
T Consensus 177 ~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in 249 (508)
T COG1404 177 PPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVIN 249 (508)
T ss_pred CCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEE
Confidence 2468889999999999984211 01246799999999999999875 5578888999999999999 99999
Q ss_pred EcCCCCCCCCCCCccccHHHHHHHHHHHCC-CEEEEecCCCCCCCC----CCCCCCC--ceEEEeeeccCCceeeeEEeC
Q 005034 339 LSITPNRRPPGIATFFNPIDMALLSAAKAG-IFVVQAAGNTGPSPK----SMSSFSP--WIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 339 ~S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-ilvV~AAGN~g~~~~----~~~~~~~--~vitVgA~~~~~~~~~~~~~~ 411 (718)
||+|.. .. ......+..++..+...| +++|+++||.+.+.. .+|...+ .+++||+.+.
T Consensus 250 ~s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~----------- 314 (508)
T COG1404 250 LSLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL----------- 314 (508)
T ss_pred ecCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-----------
Confidence 999985 11 223467788888888877 999999999998652 2333333 6666666421
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
.
T Consensus 315 -------------------------------------------------------------------------------~ 315 (508)
T COG1404 315 -------------------------------------------------------------------------------S 315 (508)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcc--ccccCchhhhhHHHHHHHHHHHHhC
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES--FAMMSGTSMAAPHIAGLAALIKQKF 649 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~--y~~~sGTSmAaP~VAG~aALl~q~~ 649 (718)
+....||++|+... .+++|||.+|.+.. . .....+.. |..++||||++|||+|++||+++.+
T Consensus 316 ~~~~~~s~~g~~~~-----------~~~~apg~~i~~~~-~----~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~ 379 (508)
T COG1404 316 DTVASFSNDGSPTG-----------VDIAAPGVNILSLS-A----VNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSAN 379 (508)
T ss_pred CccccccccCCCCC-----------cceeCCCccccccc-c----ceeeeCCccceEeeccccccccHHHHHHHHHHccC
Confidence 23577889887421 19999999999832 0 00013444 9999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHhcccc
Q 005034 650 P-SFSPSAIASALSTSATL 667 (718)
Q Consensus 650 p-~ls~~~ik~~L~~TA~~ 667 (718)
| .+++.+++..+..++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 380 PNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccCCHHHHHHHHhhcccc
Confidence 9 89999999999888873
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=202.91 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=103.3
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. |++||+|++||+|.||||-||||+.+.- .. .+++|...
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn-----ae-----------------------asydfssn------ 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN-----AE-----------------------ASYDFSSN------ 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC-----ce-----------------------eecccccC------
Confidence 6776 8999999999999999999999996532 11 12222221
Q ss_pred cCCCCCCCCCCC--CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-
Q 005034 255 FNSSQDYASPFD--GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~- 331 (718)
...+++.-.| .+.|||.|||-+++..+++++ | .|||.+.++..+|+++. .+..|+++|-...-+
T Consensus 195 --dpfpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq---pymtdlieansmghep 261 (629)
T KOG3526|consen 195 --DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEP 261 (629)
T ss_pred --CCCCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC---chhhhhhhhcccCCCC
Confidence 1111111112 368999999998887766654 2 59999999999999987 677788776443322
Q ss_pred CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHH-----CCCEEEEecCCCCCCC
Q 005034 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSP 382 (718)
Q Consensus 332 ~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~g~~~ 382 (718)
..++|.+.|||.......-+.-....-+|+-.-++ .|-++|.|+|..|.+.
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~d 317 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDD 317 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCcc
Confidence 35889999999654321111122233333333333 5679999999988753
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=179.93 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=83.2
Q ss_pred ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC---CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEE
Q 005034 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (718)
Q Consensus 295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gilv 371 (718)
...||||+|+|+.+++.+.. ..+++.++.+++.+ +++|||+|||....... ..+.+.++++++.+..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEE
Confidence 46799999999999998752 34577888888877 99999999998653211 234578889999999999999
Q ss_pred EEecCCCCCCCC-----------CCCCCCCceEEEeeeccCC
Q 005034 372 VQAAGNTGPSPK-----------SMSSFSPWIFTVGAASHDR 402 (718)
Q Consensus 372 V~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~ 402 (718)
|+||||+|.... .+|+.+|+|++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999998653 3678899999999987553
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-07 Score=75.94 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=41.0
Q ss_pred CCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
....++.+.|...+|||+++++++++++|+++|+|++|+||..+++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 4578999999989999999999999999999999999999998875
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=102.93 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=64.0
Q ss_pred ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC-CEEEEcCCCCCCC-CCCCccccHHHHHHHHHHHCCCEEE
Q 005034 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-DIISLSITPNRRP-PGIATFFNPIDMALLSAAKAGIFVV 372 (718)
Q Consensus 295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-~ViN~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~GilvV 372 (718)
..+-+||+|+|..+-.-. .....+..++.+....-+ -++-.||+....- .....+.+.++.....+..+||.++
T Consensus 287 ~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 345799999999887622 223333334433332211 2333566642211 1112256778888888999999999
Q ss_pred EecCCCCCCCC--------CCCCCCCceEEEee
Q 005034 373 QAAGNTGPSPK--------SMSSFSPWIFTVGA 397 (718)
Q Consensus 373 ~AAGN~g~~~~--------~~~~~~~~vitVgA 397 (718)
+|+|.+|.... .+|+.+|+|.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999987653 35778999999998
|
|
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-07 Score=98.15 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=99.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+++.|+|+|+|+...||++..... +... +++...
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~-----~~~s-----------------------~d~~~~------ 66 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD-----PLGS-----------------------YDVNRH------ 66 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC-----ccee-----------------------EeeecC------
Confidence 5665 7999999999999999999999997532 2222 222211
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-CC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DG 333 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g 333 (718)
-+......+......|||-|++-++...++... ..|+++++++..++++.. ...+...+...... ..
T Consensus 67 ~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~----~v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 67 DNDPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG----CVSDAVEAPSLGFGPCH 134 (431)
T ss_pred CCCcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee----ecccceecccccCCCCC
Confidence 011111122224578999999999988643322 359999999999998764 11233333333333 34
Q ss_pred CCEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCC
Q 005034 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPK 383 (718)
Q Consensus 334 ~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~ 383 (718)
++|-..|||......--.........++..+. .+|-++|+|.||.|....
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 88999999975433111222233444444433 478899999999987543
|
|
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=79.15 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHH
Q 005034 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYY 537 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 537 (718)
.+...+++|||++|.+ +.|.+.++..+++.+||.++|++++..............+|.+++ +..++..|++++
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 3445678999999987 457899999999999999999999875321111112346788877 778899999998
Q ss_pred hccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCC
Q 005034 538 NSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~ 584 (718)
++ .. .+.+..+ .. ....+.++.||||||+.
T Consensus 113 ~~-~~-------~i~~~~~--------~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 113 ES-SK-------KLTFNTK--------KE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred hC-CC-------eEEEEec--------cc-cccCCccccccCcCCCC
Confidence 76 11 1222111 11 23345689999999973
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=72.24 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=85.0
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcc-hHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS-TIKQ 486 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 486 (718)
+.++|++++.|+++.......+++++..... .......|.. ..+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~-------~~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------GDVDASLCLP-GSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcC-------CCCccccCCC-CCCChhhccccEEEEeCC------CCccHHH
Confidence 5678999999999986543356776533211 1234577964 335557899999999873 45 7788
Q ss_pred HHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhcc
Q 005034 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 487 ~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
+..+++..||.|+|++++........ .....+|.+.+ ...++..|++|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~~-~~~~~iP~v~I-~~~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDVV-ADAHVLPAVHV-DYEDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCceec-ccccccceEEE-CHHHHHHHHHHHHcC
Confidence 89999999999999998876432222 22467999998 669999999999874
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=61.69 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=57.7
Q ss_pred CCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC---ccCcccCCCCCCCCeEEecCcchHHH
Q 005034 456 SSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF---VIGFQLNPTPMKMPGIIIPSPDDSKI 532 (718)
Q Consensus 456 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 532 (718)
...+...+++|+|++|.+ +.|++.+|..+++++||.|+|+++... ............+|.+++ +..++..
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345667789999999987 788999999999999999999999222 122334556778999999 7788888
Q ss_pred HHHHH
Q 005034 533 LLQYY 537 (718)
Q Consensus 533 l~~~~ 537 (718)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 88764
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00044 Score=61.83 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=61.7
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCCCCeEEecC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMKMPGIIIPS 526 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~~p~~~~~~ 526 (718)
...|. ...+...+++|+|+++.| |.|+|.+|..+++.+||.++|+||+.... +.........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 45676 455556678999999998 78999999999999999999999987631 1111224567898886 6
Q ss_pred cchHHHHHHHHhc
Q 005034 527 PDDSKILLQYYNS 539 (718)
Q Consensus 527 ~~~~~~l~~~~~~ 539 (718)
..++..|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 6778888776653
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=60.05 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccC---cccCC-CCCCCCeEEec
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLNP-TPMKMPGIIIP 525 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~---~~~~~-~~~~~p~~~~~ 525 (718)
.+.|.. ..+...+++|||++|.| +.|.+.+|..+++++||.++|+|++..... ..... ....+|.+++
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467863 34455678999999998 578899999999999999999999776211 11111 3456888886
Q ss_pred CcchHHHHHHHHhcc
Q 005034 526 SPDDSKILLQYYNSS 540 (718)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (718)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 568888898888654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=59.14 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=60.2
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccC--cc-c--C--CCCCCCCeE
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG--FQ-L--N--PTPMKMPGI 522 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~--~~-~--~--~~~~~~p~~ 522 (718)
.+.|..+. +..+++|+|+++.| |.|++.+|..+++++||.++|+|++..... .. . . .....+|.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 46788533 24568999999998 789999999999999999999999765321 11 1 1 234568888
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|++.+...
T Consensus 93 ~I-s~~dG~~L~~~l~~g 109 (118)
T cd02127 93 FL-LGKNGYMIRKTLERL 109 (118)
T ss_pred Ee-cHHHHHHHHHHHHcC
Confidence 87 567777787776643
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=60.65 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=56.3
Q ss_pred CccCCcCceEEEEEeecccccCcch-----HHHHHHHHHhCCCcEEEEEeCCCccCc----ccCCC-CCCCCeEEecCcc
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLST-----IKQAFETAKNLSAAGIVFYMDPFVIGF----QLNPT-PMKMPGIIIPSPD 528 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~ga~~vi~~~~~~~~~~----~~~~~-~~~~p~~~~~~~~ 528 (718)
+.+.+++|||+|+.| +.|. |.+|+.+|+++||.++|+||+....+. ..... ...+|.+++ +..
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445678999999999 5677 999999999999999999999843221 11222 467898887 667
Q ss_pred hHHHHHHHHhc
Q 005034 529 DSKILLQYYNS 539 (718)
Q Consensus 529 ~~~~l~~~~~~ 539 (718)
++..|...+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 88888876643
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0029 Score=58.46 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=62.6
Q ss_pred cccccCCCCCC-ccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC-ccCcc--cCCCCCCCCeEEe
Q 005034 449 YVGECQDSSNF-NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF-VIGFQ--LNPTPMKMPGIII 524 (718)
Q Consensus 449 ~~~~c~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~~--~~~~~~~~p~~~~ 524 (718)
..+.|...... ......|+|+++.| |.|+|.+|..+++.+||.++|+|++.. ..... .......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 45678855432 34568999999998 789999999999999999999999886 21111 1222346787665
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.++...
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 668888888887654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=57.84 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=60.7
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCc---c--cCCCCCCCCeEE
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---Q--LNPTPMKMPGII 523 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~---~--~~~~~~~~p~~~ 523 (718)
..+.|... +...++|+|+++.| |.|++.+|..+++++||.++|+|++....+. . .......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 35778644 55778999999998 7899999999999999999999987753221 1 112345688888
Q ss_pred ecCcchHHHHHHHHhc
Q 005034 524 IPSPDDSKILLQYYNS 539 (718)
Q Consensus 524 ~~~~~~~~~l~~~~~~ 539 (718)
+ +..++..|..+.+.
T Consensus 97 I-s~~~g~~L~~l~~~ 111 (117)
T cd04813 97 T-SRTSYHLLSSLLPK 111 (117)
T ss_pred E-cHHHHHHHHHhccc
Confidence 7 57788888776554
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0035 Score=57.23 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=59.1
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcc
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPD 528 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 528 (718)
..+.|..... +..+++|+|+++.| +.|.+.+|..+++++||.++|+|++....-.........+|.+.+ ..
T Consensus 40 ~~~gC~~~~~-~~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPD-DTPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCc-ccccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 3567875433 22368999999998 679999999999999999999999775311111223334555544 88
Q ss_pred hHHHHHHHHhcc
Q 005034 529 DSKILLQYYNSS 540 (718)
Q Consensus 529 ~~~~l~~~~~~~ 540 (718)
++..|++.+...
T Consensus 111 ~G~~l~~~l~~G 122 (129)
T cd02124 111 DGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHhcC
Confidence 999998877653
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0036 Score=56.40 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=61.0
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc---CCCCCCCCeEEec
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL---NPTPMKMPGIIIP 525 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~---~~~~~~~p~~~~~ 525 (718)
....|..... . .+++|||++|.+ +.|++..+..+++++||.++|++++........ ......+|.+++
T Consensus 26 ~~~~C~~~~~-~-~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN-A-AAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc-C-CCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3567865443 3 348999999987 458888999999999999999999876421111 112346888887
Q ss_pred CcchHHHHHHHHhcc
Q 005034 526 SPDDSKILLQYYNSS 540 (718)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 778899999998753
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0038 Score=56.88 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=60.7
Q ss_pred ccccCCCCCCc-cC----CcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc----------CC
Q 005034 450 VGECQDSSNFN-QD----LVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL----------NP 514 (718)
Q Consensus 450 ~~~c~~~~~~~-~~----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~----------~~ 514 (718)
.+.|+...... +. ...++|+++.| |.|+|.+|+.+++.+||.++|+|++....-... ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 56888765533 22 36789999998 789999999999999999999999865311110 11
Q ss_pred CCCCCCeEEecCcchHHHHHHHHhcc
Q 005034 515 TPMKMPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 515 ~~~~~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
....+|.+++ +..++..|+..+...
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2345788887 557888888877653
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=57.06 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=59.8
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc-----Ccc---cCC---CCCC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-----GFQ---LNP---TPMK 518 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-----~~~---~~~---~~~~ 518 (718)
...|.... +...++|+|+++.| +.|++.+|..+++.+||.++|++++.... .+. ..+ ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787432 25568999999998 78999999999999999999999866431 111 111 2457
Q ss_pred CCeEEecCcchHHHHHHHHhcc
Q 005034 519 MPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 519 ~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
||.+++ +..++..|++++...
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 888886 567778888877653
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=56.92 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=63.0
Q ss_pred cccccCCCCC-CccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc-C----CCCCCCCeE
Q 005034 449 YVGECQDSSN-FNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL-N----PTPMKMPGI 522 (718)
Q Consensus 449 ~~~~c~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~-~----~~~~~~p~~ 522 (718)
....|..... +...+++|||++|.+ +.|.+..+..+++++||.|+|++++........ . .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 4566864321 456778999999987 457889999999999999999999876321111 1 244578988
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|+.++.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 679999999998753
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0067 Score=56.30 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=59.3
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc-CcccC----CCCCCCCeEEe
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLN----PTPMKMPGIII 524 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-~~~~~----~~~~~~p~~~~ 524 (718)
.+.|.... ..++|+|+++.| +.|++.+|..+++++||.++|+|++.... .+... .....||.+++
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 78999999999999999999999876521 11111 11357886654
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.++...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 678888888887654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0079 Score=54.50 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCCCCeEEecC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMKMPGIIIPS 526 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~~p~~~~~~ 526 (718)
...|... .+ +.+++|||+++.| +.|.+.+|..+++++||.++|+|++.... .....+....+|.+++ +
T Consensus 31 ~~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s 101 (122)
T cd02130 31 NLGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-S 101 (122)
T ss_pred CCCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-c
Confidence 3457632 22 2468999999998 67889999999999999999999977311 1112223456888876 6
Q ss_pred cchHHHHHHHHhcc
Q 005034 527 PDDSKILLQYYNSS 540 (718)
Q Consensus 527 ~~~~~~l~~~~~~~ 540 (718)
..++..|+..+...
T Consensus 102 ~~~G~~L~~~l~~g 115 (122)
T cd02130 102 QEDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHHhcC
Confidence 68888888877654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0064 Score=57.36 Aligned_cols=84 Identities=13% Similarity=0.244 Sum_probs=61.6
Q ss_pred ccccCCCCCC--ccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCC-----CCCCCCeE
Q 005034 450 VGECQDSSNF--NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP-----TPMKMPGI 522 (718)
Q Consensus 450 ~~~c~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~-----~~~~~p~~ 522 (718)
.+.|...... +.....|+|+++.| |.|+|.+|..+++++||.++|+|++.......... ....+|.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 5678754431 33678999999998 78999999999999999999999986532111111 24578888
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|..++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 86 667788888877653
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.14 Score=46.69 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred CccCCcCceEEEEEeecccccCcc--hHHHHHHHHHhCCCcEEEEEeCCCccCc--cc----CCCCCCCCeEEecCcchH
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLS--TIKQAFETAKNLSAAGIVFYMDPFVIGF--QL----NPTPMKMPGIIIPSPDDS 530 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~--~~----~~~~~~~p~~~~~~~~~~ 530 (718)
+...+++|||+++.++ .+ .+..++.++.+.||.++|++++...... .. ......+|.+.+ +..++
T Consensus 38 ~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 3345689999999983 44 7789999999999999999986543211 11 123456898876 67888
Q ss_pred HHHHHHHhc
Q 005034 531 KILLQYYNS 539 (718)
Q Consensus 531 ~~l~~~~~~ 539 (718)
..|...++.
T Consensus 111 ~~L~~~l~~ 119 (127)
T cd04819 111 LRLARVAER 119 (127)
T ss_pred HHHHHHHhc
Confidence 888887765
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.41 Score=46.23 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=35.2
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
..+++|+|+|+.+ +.|.+.+|+.+|+..||.|+|+|++..
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 3468999999998 567789999999999999999998864
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.1 Score=41.17 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred CccCCcCceEEEEEeecccccCcchHHHH-------HHHHHhCCCcEEEEEeCCCc------cCcccC-CCCCCCCeEEe
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLSTIKQA-------FETAKNLSAAGIVFYMDPFV------IGFQLN-PTPMKMPGIII 524 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~ga~~vi~~~~~~~------~~~~~~-~~~~~~p~~~~ 524 (718)
+...+++|||+++.+..+......++-.+ ...+.+.||.++|+++.... .+.... .....+|.+.+
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 34567999999998843321111155554 68899999999999985422 222222 33456898886
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|...+...
T Consensus 113 -s~ed~~~L~r~l~~g 127 (134)
T cd04815 113 -SVEDADMLERLAARG 127 (134)
T ss_pred -chhcHHHHHHHHhCC
Confidence 566777777666543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.5 Score=41.01 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCccCCcCceEEEEEeecc--------c----ccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 458 NFNQDLVQGNLLICSYSIR--------F----VLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~--------~----~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
.+...+++|||+++.+... + ...-|++..|..++...||.|||+|++...
T Consensus 40 Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 40 DYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred hccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4456689999999987521 0 012257889999999999999999998764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=85.88 E-value=1.6 Score=40.51 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCccCCcCceEEEEEeeccccc------Cc------chHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 458 NFNQDLVQGNLLICSYSIRFVL------GL------STIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~------~~------~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+...+++|||+++.++.+... +. .++..|...+.+.||.|+|++++..
T Consensus 40 DYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 40 DYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred hcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4556789999999987533110 01 1577899999999999999999875
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.2 Score=41.34 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
-+++|||+++.+ |....-.|+.+|+..||.|+|+|.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 568999999998 445567899999999999999999875
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=84.30 E-value=2.1 Score=39.45 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=36.9
Q ss_pred CCccCCcCceEEEEEeecccccC------cchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 458 NFNQDLVQGNLLICSYSIRFVLG------LSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~~------~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+...+++|||+++.++.....+ -..+..|..++.+.||.|+|++++..
T Consensus 42 Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 42 DYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 44566899999999985431111 12477899999999999999999875
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.08 E-value=0.82 Score=53.46 Aligned_cols=25 Identities=44% Similarity=0.846 Sum_probs=22.8
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFAD 207 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~ 207 (718)
.|+|+||+|||+|||||+.-|-|.-
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~v 101 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQV 101 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCceE
Confidence 5999999999999999999888874
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.75 E-value=4.1 Score=44.57 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=50.0
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc-----cCcccCCCCCCCCeEEecCcchHHHHH
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-----IGFQLNPTPMKMPGIIIPSPDDSKILL 534 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~l~ 534 (718)
....+++++++.| |.|.+..|...++++||.+.++.|+... -+.........||..++.. .++..+.
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~-~~~~~l~ 162 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISY-SDGRDLN 162 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEh-hhHHHHH
Confidence 4567899999998 7899999999999999999999998542 1222334567789888854 4444444
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=80.69 E-value=2.8 Score=41.94 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=34.3
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
..+++|||+++.++ .+...+|+.+|+..||.|+|+|++...
T Consensus 67 gvdv~GKIvLvr~G------~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYG------GIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECC------CccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 45789999999873 455578999999999999999998753
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 718 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-40 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 2e-39 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 8e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 8e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 8e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 8e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 9e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 9e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 421 bits (1082), Expect = e-138
Identities = 174/562 (30%), Positives = 256/562 (45%), Gaps = 66/562 (11%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHT FL L + + G+ V++ +D+GI P SF DD +P +
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG--LGQDVIVAVLDSGIWPESASFQDD---GMPEIPKRWK 55
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GIC+ F + CNRKLIGA +F + + S D DGHG+H AS+ AGN
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGN 114
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
V G+ G A G+APR+ +AVYK + G F +D++AA+DQA DGVD+IS+S
Sbjct: 115 FAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISY 173
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
P + + I +A A G+ V +AGN GP S+++ SPWI V + D
Sbjct: 174 GYRFIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R + ++ LGN L I G L P + +I + +C
Sbjct: 230 RTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYN-------------KTLSDCSSEELL 276
Query: 460 NQ-DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMK 518
+Q + + ++IC + F + I +A +F +
Sbjct: 277 SQVENPENTIVICDDNGDFSDQMRIITRA-------RLKAAIFISED---PGVFRSATFP 326
Query: 519 MPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578
PG+++ + + K ++ Y +S A I + AP + S
Sbjct: 327 NPGVVV-NKKEGKQVINYVKNS------------VTPTATITFQETYLDTKPAPVVAASS 373
Query: 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSL----GTDSVEFQGESFAMMSGTSMA 634
ARGP I KP+++APG I AA+ + + + SGTSMA
Sbjct: 374 ARGPSR-----SYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMA 428
Query: 635 APHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPF 694
APH AG+AA++K P +SPSAI SA+ T+A D PI K +N ATP
Sbjct: 429 APHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-------KDSDNNKAATPL 481
Query: 695 DMGSGFVNATASLDPGLVFDAS 716
DMG+G V+ +LDPGLV+DA+
Sbjct: 482 DMGAGHVDPNRALDPGLVYDAT 503
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 416 bits (1069), Expect = e-137
Identities = 169/555 (30%), Positives = 249/555 (44%), Gaps = 72/555 (12%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TT + FLG P + +V+G +DTGI P PSF D+ P P +
Sbjct: 1 TTRSWDFLGFPLTVPRRSQ----VESNIVVGVLDTGIWPESPSFDDE---GFSPPPPKWK 53
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
G CE + +F CNRK+IGAR + G S D P D +GHG+HTAS AAG
Sbjct: 54 GTCETSNNFR---CNRKIIGARSYHI-----GRPISPGDVNGPRDTNGHGTHTASTAAGG 105
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
+ G G A G P + IA YK + G D++AA D A DGVDIISLS+
Sbjct: 106 LVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSV 164
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
F + I + A + GI +AGN GP+ + +S SPW+ +V A++ D
Sbjct: 165 GG---ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221
Query: 402 RIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQ 461
R + + +GN + GV + ++ Y L+S N + + C D S N
Sbjct: 222 RKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VNP 277
Query: 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPG 521
+L++G +++C S K A L + Y D + + P
Sbjct: 278 NLLKGKIVVCEASFGPH---EFFKSLDGAAGVLMTSNTRDYADSYPL-----------PS 323
Query: 522 IIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581
++ P+D L+Y S A I + SAP ++ +S+RG
Sbjct: 324 SVL-DPNDLLATLRYIYSIR------------SPGATIFKS-TTILNASAPVVVSFSSRG 369
Query: 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL 641
P+ D++KP++ PG I AAW S+ + F ++SGTSM+ PHI G+
Sbjct: 370 PNR-----ATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGI 424
Query: 642 AALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFV 701
A +K P++SP+AI SAL T+A+ + P F GSG V
Sbjct: 425 ATYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHV 468
Query: 702 NATASLDPGLVFDAS 716
N ++ PGLV+DA+
Sbjct: 469 NPLKAVRPGLVYDAN 483
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = 7e-99
Identities = 89/553 (16%), Positives = 168/553 (30%), Gaps = 83/553 (15%)
Query: 173 QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPS 232
+ ++ G G G V+ ID G D H ++ E +
Sbjct: 7 KTLQ-EKAGK---GAGTVVAVIDAGFDKNHEAWRLTDK---TKARYQSKEDLEKAKKEHG 59
Query: 233 GS----CNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVV 288
+ N K+ ++ HG+H + + +GN
Sbjct: 60 ITYGEWVNDKVAYYHDYS-------------KDGKTAVDQEHGTHVSGILSGN----APS 102
Query: 289 TGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDGVDIISLSITPNRRP 347
G P + + + + + +A + AI A G +I++S
Sbjct: 103 ETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNA--A 160
Query: 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAASH-DRI 403
A + A A G+ +V +AGN P VG + D
Sbjct: 161 LAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220
Query: 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDL 463
T + + V + + + D Y +F
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFK--D 278
Query: 464 VQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGII 523
V+G + + G K AK A G++ Y + P +MP
Sbjct: 279 VKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAF 332
Query: 524 IPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583
I S D +L ++ K + S K+ +S+ G
Sbjct: 333 I-SRKDGLLLKDNPQKTIT----------------FNATPKVLPTASGTKLSRFSSWGLT 375
Query: 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA 643
+ +KP++ APG I ++ + +A +SGTSM+AP +AG+
Sbjct: 376 ADG-------NIKPDIAAPGQDILSSVA----------NNKYAKLSGTSMSAPLVAGIMG 418
Query: 644 LIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703
L+++++ + P S A + + ++ ++ +P G+G V+A
Sbjct: 419 LLQKQYETQYPDMTPSERLDLAKKVLMSSATAL------YDEDEKAYFSPRQQGAGAVDA 472
Query: 704 TASLDPGLVFDAS 716
+ +
Sbjct: 473 KKASAATMYVTDK 485
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-32
Identities = 89/536 (16%), Positives = 159/536 (29%), Gaps = 135/536 (25%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
++ I ID+G D +H +
Sbjct: 17 SDSQAGNRTICIIDSGYDRSHNDLNAN--------------------------------- 43
Query: 242 ARHFAASAITRGI-FNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGM 299
G + + ++ P + + HG+H A ++AA + VV G+
Sbjct: 44 --------NVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGVV----------GV 85
Query: 300 APRSH--IAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRRPPGIATFFNP 356
P + I + K ++ G+++ +VAAID G +++++S+ G +
Sbjct: 86 MPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL-------GGSGSTTT 138
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNS 413
AL + G+ ++ AAGN G S S + + +V A S+ ++ +
Sbjct: 139 ERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY---TDQ 195
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSY 473
+ IS PG + T+ L + T +
Sbjct: 196 VEIS----GPGEAILSTVTVGEGRLADITIGGQSYFSN---------------------- 229
Query: 474 SIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKIL 533
V+ + + + + + + M I
Sbjct: 230 ---GVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV-----ER 281
Query: 534 LQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDAD 593
+ SS TK GA I+ A P A S D
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP--FLVDANSDITVPSVSVDRA 339
Query: 594 IMKPNLVAPGNSI-WAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSF 652
G S + + + +GTSMA PH++G+A L+ P
Sbjct: 340 TGLALKAKLGQSTTVSNQG----------NQDYEYYNGTSMATPHVSGVATLVWSYHPEC 389
Query: 653 SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
S S + +AL+ +A G D G G +NA A+
Sbjct: 390 SASQVRAALNATADDLSVAGR-----------DNQT--------GYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 77/351 (21%), Positives = 130/351 (37%), Gaps = 92/351 (26%)
Query: 127 LINGFSVFVTPQQAEKLSRRRE-----------VANVVSDFSVRTATTHTPQFLGLPQ-- 173
+I +V + + ++ + V + D+ V+ A Q
Sbjct: 68 IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVM 127
Query: 174 --GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFP 231
W G G+ IG IDTGID +HP DF
Sbjct: 128 ATNMW----NLGYDGSGITIGIIDTGIDASHPDLQGKVIG---------------WVDFV 168
Query: 232 SGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGH 291
+G +P+D +GHG+H AS+AAG
Sbjct: 169 NGK---------------------------TTPYDDNGHGTHVASIAAGT-------GAA 194
Query: 292 HFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSITPNRRP 347
G GMAP + + K L G +D++ +D A Q+ G+ +I+LS+ ++
Sbjct: 195 SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS 254
Query: 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAA-SHDRI- 403
G + + A+ +A AG+ VV AAGN+GP+ ++ S + + TVGA +D I
Sbjct: 255 DGT----DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVIT 310
Query: 404 -YTN---SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYV 450
+++ + + APG +I+A + + +D Y
Sbjct: 311 DFSSRGPTADNRLKPEVV----APGNW----IIAARASGTSMGQPINDYYT 353
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 4e-19
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ I +S+RGP ++ +KP +VAPGN I AA +S GT + + +
Sbjct: 303 VDKYDVITDFSSRGPTADNR-------LKPEVVAPGNWIIAARAS-GTSMGQPINDYYTA 354
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
GT+MA PH+AG+AAL+ Q PS++P + +AL +A
Sbjct: 355 APGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD------------------IVK 396
Query: 688 QSPATPFDMGSGFVNATASLDPG 710
G+G VNA +
Sbjct: 397 PDEIADIAYGAGRVNAYKAAYYD 419
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 75/251 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G V + ID+GID +HP D K+ G
Sbjct: 21 YTGSNVKVAVIDSGIDSSHP-------------------------DL-------KVAGGA 48
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPR 302
+ + + + D + HG+H A VAA N+ I V+ G+AP
Sbjct: 49 SM--------VPSETNPFQ---DNNSHGTHVAGTVAALNNSIGVL----------GVAPS 87
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + K L G + ++ I+ A + +D+I++S+ G + + A+
Sbjct: 88 ASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSL-------GGPSGSAALKAAVD 140
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSP----WIFTVGA-ASHDRI--YTNSIILGNSLT 415
A +G+ VV AAGN G S S + P + VGA S ++ +++ G L
Sbjct: 141 KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV---GPELD 197
Query: 416 ISGVGLAPGTD 426
+ APG
Sbjct: 198 VM----APGVS 204
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 45/141 (31%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S+ + +S+ GP+ + ++APG SI + G +
Sbjct: 180 VDSSNQRASFSSVGPELD-------------VMAPGVSIQSTLP----------GNKYGA 216
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+GTSMA+PH+AG AALI K P+++ + + S+L + T
Sbjct: 217 YNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------------- 255
Query: 688 QSPATPFDMGSGFVNATASLD 708
F G G +N A+
Sbjct: 256 -KLGDSFYYGKGLINVQAAAQ 275
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 62/305 (20%), Positives = 92/305 (30%), Gaps = 87/305 (28%)
Query: 126 YLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYE-- 183
LI V V KL + V V D + G Q A G E
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 184 ----------TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
+ + + +DTG+D HP A + + G
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAW---------------CVSTLRG 135
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHH 292
S D +GHG+H +AA N+ I VV
Sbjct: 136 ----------------------KVSTKLRDCADQNGHGTHVIGTIAALNNDIGVV----- 168
Query: 293 FGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-------------------- 332
G+AP I + L G +D+ I+QA
Sbjct: 169 -----GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223
Query: 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWI 392
++IS+S+ G + + ++ A AGI +V A+GN G S + P +
Sbjct: 224 AAEVISMSL-------GGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEV 276
Query: 393 FTVGA 397
VGA
Sbjct: 277 IAVGA 281
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S I +S R P+ + APG I + + +S+
Sbjct: 282 IDSNDNIASFSNRQPE---------------VSAPGVDILSTYP----------DDSYET 316
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+ GT+MA PH++G+ ALI+ + + + G I+ A
Sbjct: 317 LMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG--ILHITADDLGPTG 374
Query: 688 QSPATPFDMGSGFVNATASLD 708
G G V A ++
Sbjct: 375 WDADY----GYGVVRAALAVQ 391
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 63/269 (23%), Positives = 100/269 (37%), Gaps = 84/269 (31%)
Query: 170 GLPQ----GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICE 225
G+P G V + +DTGI +HP
Sbjct: 7 GIPLIKADKVQ----AQGFKGANVKVAVLDTGIQASHP---------------------- 40
Query: 226 VTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGI 284
D ++G F A A DG+GHG+H A VAA ++
Sbjct: 41 ---DL-------NVVGGASFVA------------GEAYNTDGNGHGTHVAGTVAALDNTT 78
Query: 285 PVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPN 344
V+ G+AP + K L S G + +V+ I+ A +G+D+I++S+
Sbjct: 79 GVL----------GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSL--- 125
Query: 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSP----WIFTVGAA-S 399
G A+ + A+ +A G+ VV AAGN+G S + + P + VGA S
Sbjct: 126 ----GGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS 181
Query: 400 HDRI--YTNSIILGNSLTISGVGLAPGTD 426
+ +++ G L + APG
Sbjct: 182 NSNRASFSSV---GAELEVM----APGAG 203
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 45/140 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S +S+ G + E ++APG +++ + ++A
Sbjct: 179 VDSNSNRASFSSVGAELE-------------VMAPGAGVYSTYP----------TNTYAT 215
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
++GTSMA+PH+AG AALI K P+ S S + + LS++AT
Sbjct: 216 LNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT--------------------- 254
Query: 688 QSPATPFDMGSGFVNATASL 707
+ F G G +N A+
Sbjct: 255 -YLGSSFYYGKGLINVEAAA 273
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 49/355 (13%), Positives = 93/355 (26%), Gaps = 73/355 (20%)
Query: 71 FHKQNGTSGRLSRLNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLING 130
+ + N ++ Y++ + + + K + +Y+ ++
Sbjct: 19 YFQSNAMGSSHHHYHHENLYFQGSEELYYSVEYKNTATFNKLVKKKSLNVVYNIPE-LHV 77
Query: 131 FSVFVTPQQAEKLSR-RREVANVVSDFSVRTATTHTPQFL---------------GLPQG 174
+ +T A L+ + ++ + + S + T
Sbjct: 78 AQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGA 137
Query: 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGS 234
++ I IDTG+ H +
Sbjct: 138 SYDDLPK----HANTKIAIIDTGVMKNHDDLKN--------------------------- 166
Query: 235 CNRKLIGARHFAASAITRGIFNSSQ-DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHF 293
+++ RG D D GHG+ + + N
Sbjct: 167 --NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN------------ 212
Query: 294 GNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS---------ITPN 344
G G+AP + +Y+ V AI QAA DG +I++S
Sbjct: 213 GKLIGVAPNNKFTMYRVFGSK-KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQ 271
Query: 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
++ + A+ A K VV AAGN G G
Sbjct: 272 TFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 31/148 (20%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621
+ FSN +A G D +I +
Sbjct: 347 SNLSEFSNFGMNYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN---------- 396
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKF-PSFSPSAIASALSTSATLYDKNGGPIMAQRA 680
+ +GT++A P ++G ALI K+ P L T +
Sbjct: 397 NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS------ 450
Query: 681 YAKPDENQSPATPFDMGSGFVNATASLD 708
G G ++ +L+
Sbjct: 451 --------------RYGHGELDVYKALN 464
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 65/224 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP + + +
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVN------------------------------NVEQCK 52
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG---NHGIPVVVTGHHFGNASGMA 300
F ++ S D +GHG+H A A + + G+A
Sbjct: 53 DF--------TGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIY----------GVA 94
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-----DIISLSITPNRRPPGIATFFN 355
P + + YK L S G++ D+ AAI AA IIS+S+ G + +
Sbjct: 95 PDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSL-------GSSANNS 147
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGA 397
I A+ A G+ +V AAGN+G S ++ P V A
Sbjct: 148 LISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
N ++ YS+RG + + APG+S+++ W + +
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEG-DIEISAPGSSVYSTWY----------NGGYNTI 246
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGP 674
SGTSMA PH++GLAA I + PS S + + S L A D GG
Sbjct: 247 SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY 292
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 46/253 (18%), Positives = 73/253 (28%), Gaps = 30/253 (11%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ I ID D T F +P + S + +
Sbjct: 44 QTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLK 103
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
+ + D + H H S G PV G+AP
Sbjct: 104 GKEK-----EEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIAP 148
Query: 302 RSHIAVYKALYKSFG-----GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNP 356
+ G ++ AID A + G +II + RP +
Sbjct: 149 NCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFC---RPTQTSEGEEI 205
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNS 413
+ A+ + +V GN + + P VGAA D ++N G +
Sbjct: 206 LVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNW---GGN 262
Query: 414 LTISGVGLAPGTD 426
T G+ LAPG +
Sbjct: 263 NTKEGI-LAPGEE 274
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 50/151 (33%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621
G +FSN G + K ++APG I A
Sbjct: 251 GTPCHFSN----------WGGNNT----------KEGILAPGEEILGAQPC--------- 281
Query: 622 GESFAMMSGTSMAAPHIAGLAALIK----QKFPSFSPSAIASALSTSATLYDKNGGPIMA 677
E ++GTSMAAP + G++AL+ Q+ A+ +AL +A
Sbjct: 282 TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI----------- 330
Query: 678 QRAYAKPDENQSPATPFDMGSGFVNATASLD 708
P + + P GFVN ++
Sbjct: 331 ------PCDPEVVEEPERCLRGFVNIPGAMK 355
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 63/301 (20%), Positives = 96/301 (31%), Gaps = 85/301 (28%)
Query: 143 LSRRREVANVVSDFSVRTATT--HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDP 200
+ + R + D + + P W G G +IG IDTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEVPMGVEI-VEAPA-VW----RASAKGAGQIIGVIDTGCQV 54
Query: 201 THPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQD 260
HP A+ + + D
Sbjct: 55 DHPDLAERIIG---------------GVNLTTDYGG-----------------------D 76
Query: 261 YASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFA 319
+ D +GHG+H A VAA G VV G+AP++ + + KAL G
Sbjct: 77 ETNFSDNNGHGTHVAGTVAAAETGSGVV----------GVAPKADLFIIKALSGDGSGEM 126
Query: 320 ADVVAAIDQAAQD------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQ 373
+ AI A + II++S+ G T + A+ A + VV
Sbjct: 127 GWIAKAIRYAVDWRGPKGEQMRIITMSL-------GGPTDSEELHDAVKYAVSNNVSVVC 179
Query: 374 AAGNTGPSPKSMSSFS-----PWIFTVGA-ASHDRI--YTNSIILGNSLTISGVGLAPGT 425
AAGN G + + F+ + VGA R+ +TN+ + I APG
Sbjct: 180 AAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNT---NEEIDIV----APGV 232
Query: 426 D 426
Sbjct: 233 G 233
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635
++ + + +VAPG I + + +A +SGT+MAA
Sbjct: 217 DFTNTNEEID-------------IVAPGVGIKSTYL----------DSGYAELSGTAMAA 253
Query: 636 PHIAGLAALIKQKFP-----SFSPSAIASALSTSAT 666
PH+AG ALI S S + I + L AT
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT 289
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 5e-23
Identities = 55/249 (22%), Positives = 86/249 (34%), Gaps = 71/249 (28%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
G G I +DTG+ HP A G DF
Sbjct: 26 IAEGSGAKIAIVDTGVQSNHPDLAGKV----------VGGW-----DFVDND-------- 62
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMA 300
++P +G+GHG+H A +AA N+ + G A
Sbjct: 63 -------------------STPQNGNGHGTHCAGIAAAVTNNSTGIA----------GTA 93
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA 360
P++ I + L S G V I AA G +ISLS+ G + + A
Sbjct: 94 PKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSL-------GGTVGNSGLQQA 146
Query: 361 LLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNSLTIS 417
+ A G VV AAGN G + + ++ V + +D ++ G+ + ++
Sbjct: 147 VNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTY---GSWVDVA 203
Query: 418 GVGLAPGTD 426
APG+
Sbjct: 204 ----APGSS 208
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 46/141 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
++ +S G ++D + APG+SI++ + ++A
Sbjct: 184 TDQNDNKSSFSTYGS-----WVD--------VAAPGSSIYSTYP----------TSTYAS 220
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+SGTSMA PH+AG+A L+ + S S I +A+ +A
Sbjct: 221 LSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTAD--------------------- 257
Query: 688 QSPATPFDMGSGFVNATASLD 708
+ T G VNA ++
Sbjct: 258 KISGTGTYWAKGRVNAYKAVQ 278
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 60/248 (24%), Positives = 85/248 (34%), Gaps = 71/248 (28%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G I IDTG+D THP G DF
Sbjct: 28 KGSSGQEIAVIDTGVDYTHPDLDGKV----------IKGY-----DFVDND--------- 63
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMAP 301
P D + HG+H A +AA N+ + GMAP
Sbjct: 64 ------------------YDPMDLNNHGTHVAGIAAAETNNATGIA----------GMAP 95
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMAL 361
+ I +AL ++ G +D+ AI AA G ++I+LS+ G ++ A+
Sbjct: 96 NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSL-------GCDCHTTTLENAV 148
Query: 362 LSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNSLTISG 418
A G VV AAGN G S + + VGA ++N G + +
Sbjct: 149 NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNY---GTWVDVV- 204
Query: 419 VGLAPGTD 426
APG D
Sbjct: 205 ---APGVD 209
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 46/141 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ ++ +S G + +VAPG I + + G +A
Sbjct: 185 VDQYDRLASFSNYGTWVD-------------VVAPGVDIVSTIT----------GNRYAY 221
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
MSGTSMA+PH+AGLAAL+ + + I A+ +A
Sbjct: 222 MSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTAD--------------------- 258
Query: 688 QSPATPFDMGSGFVNATASLD 708
+ T G +N+ ++
Sbjct: 259 KISGTGTYFKYGRINSYNAVT 279
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 8e-22
Identities = 62/366 (16%), Positives = 110/366 (30%), Gaps = 101/366 (27%)
Query: 101 ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160
R+ RR + + L+ +H L+ GF V ++ E + V + D SV
Sbjct: 95 ARRLQAQAARRGYLTKI---LHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151
Query: 161 ATTHTPQFLGL----PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPV 216
+ L P E G V + +DT I H
Sbjct: 152 QSIPW----NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI----------- 196
Query: 217 PSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS 276
R + ++ + D HG+H A
Sbjct: 197 ------------------------EGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAG 232
Query: 277 VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD- 335
V +G +G+A + + + L G + + ++ + +
Sbjct: 233 VVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQ 278
Query: 336 -----IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP-----SPKSM 385
++ L + + ++ A A+AG+ +V AAGN SP S
Sbjct: 279 PVGPLVVLLPLA--------GGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPAS- 329
Query: 386 SSFSPWIFTVGA-------ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHAL 438
+P + TVGA + + TN G + + APG D +I A
Sbjct: 330 ---APEVITVGATNAQDQPVTLGTLGTNF---GRCVDL----FAPGED----IIGASSDC 375
Query: 439 NNNTTT 444
+ +
Sbjct: 376 STCFVS 381
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-12
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG I A S T F SGTS AA H+AG+AA++ P + + +
Sbjct: 363 APGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 414
Query: 661 LSTSAT 666
L +
Sbjct: 415 LIHFSA 420
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 57/247 (23%), Positives = 89/247 (36%), Gaps = 73/247 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G GV + +DTGI THP F G
Sbjct: 21 LTGSGVKVAVLDTGIS-THPDLNIRGG-----------------ASFVPGE--------- 53
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPR 302
S DG+GHG+H A +AA N+ I V+ G+AP
Sbjct: 54 ------------------PSTQDGNGHGTHVAGTIAALNNSIGVL----------GVAPS 85
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + K L S G + + ++ A +G+ + +LS+ G + ++ A+
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL-------GSPSPSATLEQAVN 138
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNSLTISGV 419
SA G+ VV A+GN+G S + VGA ++ ++ G L I
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQY---GAGLDIV-- 193
Query: 420 GLAPGTD 426
APG +
Sbjct: 194 --APGVN 198
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 45/140 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
++ +S G + +VAPG ++ + + G ++A
Sbjct: 174 TDQNNNRASFSQYGAGLD-------------IVAPGVNVQSTYP----------GSTYAS 210
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
++GTSMA PH+AG AAL+KQK PS+S I + L +AT
Sbjct: 211 LNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT--------------------- 249
Query: 688 QSPATPFDMGSGFVNATASL 707
S + GSG VNA A+
Sbjct: 250 -SLGSTNLYGSGLVNAEAAT 268
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-20
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 79/250 (31%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+ P W G + + + +DTG+D HP A + + + +
Sbjct: 15 VKAPS-VWSITDG---SVSVIQVAVLDTGVDYDHPDLAANIAW----------CVSTLRG 60
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVV 287
+ + D +GHG+H +AA N+ I VV
Sbjct: 61 KVSTKLRD---------------------------CADQNGHGTHVIGTIAALNNDIGVV 93
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD--------------- 332
G+AP I + L G +D+ I+QA
Sbjct: 94 ----------GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 143
Query: 333 -----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
++IS+S+ G + + ++ A AGI +V A+GN G S +
Sbjct: 144 DPDDDAAEVISMSL-------GGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPA 196
Query: 388 FSPWIFTVGA 397
P + VGA
Sbjct: 197 AYPEVIAVGA 206
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S I +S R P+ + APG I + + +S+
Sbjct: 207 IDSNDNIASFSNRQPE---------------VSAPGVDILSTYP----------DDSYET 241
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+ GT+MA PH++G+ ALI+ + + + G I+ A
Sbjct: 242 LMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG--ILHITADDLGPTG 299
Query: 688 QSPATPFDMGSGFVNATASLD 708
G G V A ++
Sbjct: 300 WDADY----GYGVVRAALAVQ 316
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 58/299 (19%)
Query: 164 HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI 223
+ + W G+ VV+ +DTGI H + G
Sbjct: 14 FDRYGVKADK-VW----DMGFTGQNVVVAVVDTGIL-HHRDLNANV----------LPGY 57
Query: 224 CEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASV--AAGN 281
++ S + + D HGSH A A N
Sbjct: 58 DFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTN 117
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------Q 331
+ I V G+A + + +AL + GG+ +D+ + AA +
Sbjct: 118 NRIGVA----------GVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRIAGIPENR 166
Query: 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP--SPKSMSSFS 389
+ +I++S+ + A + G VV AAGN S +S
Sbjct: 167 NPAKVINMSLG------SDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSC- 219
Query: 390 PWIFTVGAASHDRI---YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
+ +VGA + I ++N G + ++ APG D + T+ S ++ +
Sbjct: 220 NNVLSVGATTSRGIRASFSNY---GVDVDLA----APGQDILSTVDSGTRRPVSDAYSF 271
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 27/114 (23%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF----PSFSP 654
L APG I S++ + + ++++ M+GTSMA PH++G+AAL+ + +P
Sbjct: 246 LAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ + L ++ + + +GSG V+A A+++
Sbjct: 303 AELKDVLVSTTS--------------------PFNGRLDRALGSGIVDAEAAVN 336
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 8e-19
Identities = 54/282 (19%), Positives = 90/282 (31%), Gaps = 70/282 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++ DTG+D + F G K+
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSM---------HEAFRG---------------KITA---- 52
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ + D +GHG+H A GN GMAP++++
Sbjct: 53 ---------LYALGRTNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANL 92
Query: 306 AVYKALYK--SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLS 363
+ GG +++ QA G I + S T +D
Sbjct: 93 VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSW-GAAVNGAYTTDSRNVDDY--- 148
Query: 364 AAKAGIFVVQAAGNTGPSPKSMSSF--SPWIFTVGAASHDRIYTNSIILGNSL--TISGV 419
K + ++ AAGN GP+ ++S+ + TVGA + R S + S
Sbjct: 149 VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSR 208
Query: 420 G-----------LAPGTDKMYTLISALHALNNNTTTTDDMYV 450
G +APGT + + S+L ++ D Y
Sbjct: 209 GPTKDGRIKPDVMAPGTF-ILSARSSLAPDSSFWANHDSKYA 249
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-16
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 548 KKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIW 607
K I GA + +++++ + +S+RGP + +KP+++APG I
Sbjct: 177 KNAITVGATENLRPSF-GSYADNINHVAQFSSRGPTKDG-------RIKPDVMAPGTFIL 228
Query: 608 AAWSSLGTDSVEF--QGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+A SSL DS + +A M GTSMA P +AG A +++ F +L +A
Sbjct: 229 SARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAA 288
Query: 666 TLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFD 714
+ A + + G G V SL+ V +
Sbjct: 289 LI--------------AGAADIGLGYPNGNQGWGRVTLDKSLNVAYVNE 323
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 2e-18
Identities = 46/277 (16%), Positives = 87/277 (31%), Gaps = 59/277 (21%)
Query: 136 TPQQAEKLSRRREVANVVSDFSVRTATTHTPQF----LGLPQGAWIQEGGYETAGEGVVI 191
P +A KL +++ DF + ++ + + G+ T +
Sbjct: 166 NPGEASKLPWDKKILKENLDFELEMLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQ 225
Query: 192 GFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT 251
G +D + S + DF S S N
Sbjct: 226 GDLDQALRIGEYSRTHETRNV---------------DDFLSISVN--------------- 255
Query: 252 RGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKAL 311
+ + HG+H +S+A+GNH + G+AP + I
Sbjct: 256 --VHDEGNVLEVVGMSSPHGTHVSSIASGNHS---------SRDVDGVAPNAKIVSMTIG 304
Query: 312 YKSFGGF--AADVVAAIDQAAQ-----DGVDIISLSITPNRRPPGIATFFNPIDMALLSA 364
G +V A+ + + +D+I++S + ++
Sbjct: 305 DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEV---V 361
Query: 365 AKAGIFVVQAAGNTGPSPKSMSSF----SPWIFTVGA 397
K G+ V +AGN GP+ ++ + P + VGA
Sbjct: 362 NKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGA 398
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 5e-17
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 42/165 (25%)
Query: 561 GGLKANFSNSAPK---IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS 617
++A ++ + +++R P + + APG +I + +
Sbjct: 403 QMMEAEYAMREKLPGNVYTWTSRDPCIDGGQ-------GVTVCAPGGAIASVPQFTMS-- 453
Query: 618 VEFQGESFAMMSGTSMAAPHIAGLAALI----KQKFPSFSPSAIASALSTSATLYDKNGG 673
+M+GTSMAAPH+AG AL+ KQ+ +SP +I A+S +AT K G
Sbjct: 454 ------KSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT---KLGY 504
Query: 674 PIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASKS 718
PF G G +N + + SK
Sbjct: 505 V-----------------DPFAQGHGLLNVEKAFEHLTEHRQSKD 532
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 2e-18
Identities = 46/297 (15%), Positives = 83/297 (27%), Gaps = 80/297 (26%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+G+ Q W + +G +++ +DTG+D THP
Sbjct: 141 IGVTQQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEG--------------------- 174
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVV 287
++I G G+H A +AA G +V
Sbjct: 175 ---------QVIAGYRP-------AFDEELPAGTDSSYGGSAGTHVAGTIAAKKDGKGIV 218
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFG------GFAADVVAAIDQAAQDGVDIISLSI 341
G+AP + I V A I A G +++ S
Sbjct: 219 ----------GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSW 268
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS-SFSPWIFTVGAASH 400
G + + A A + G+ +V +AGN + P + V A +
Sbjct: 269 -------GGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDY 321
Query: 401 DRI------YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVG 451
+++ + +++ APG + T+ G
Sbjct: 322 YGGTFRVAGFSSR---SDGVSVG----APGVTILSTVPGEDSIGYEGHNENVPATNG 371
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 2e-14
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 40/151 (26%)
Query: 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW--------SSLGTDS 617
++ ++ +S+R + APG +I + +
Sbjct: 320 DYYGGTFRVAGFSSRSDGVS-------------VGAPGVTILSTVPGEDSIGYEGHNENV 366
Query: 618 VEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMA 677
G ++ GTSMAAPH+ G+ A++ QKFP+ P I L +A D NG
Sbjct: 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF--DFNG----- 419
Query: 678 QRAYAKPDENQSPATPFDMGSGFVNATASLD 708
D G G V A+L
Sbjct: 420 ------------NGWDHDTGYGLVKLDAALQ 438
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 57/271 (21%), Positives = 88/271 (32%), Gaps = 85/271 (31%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ G GV IDTG+ TH F AS
Sbjct: 26 TDYDGSGVTAFVIDTGVLNTHNEFGGRAS------------------------------- 54
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
++ + D +GHG+H A G+ G+A
Sbjct: 55 -----------SGYDFIDNDYDATDCNGHGTHVAGTIGGST--------------YGVAK 89
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV--DIISLSITPNRRPPGIATFFNPIDM 359
++ + L S G + V+A I+ + + ++S+ D
Sbjct: 90 NVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLG--------GGASQATDD 141
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ +A AGI V AAGN SP + TVG+ S+D + S G
Sbjct: 142 AVNAAVAAGITFVVAAGNDNSNACNYSPAR----AADAITVGSTTSNDSRSSFSNY-GTC 196
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTT 444
L I APG+ + S+ + N+ T T
Sbjct: 197 LDI----YAPGSS----ITSSWYTSNSATNT 219
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
++ APG+SI ++W + + + +SGTSMA+PH+AG+AAL + P+ SP+ +
Sbjct: 198 DIYAPGSSITSSWYTSNSAT--------NTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 658 ASALSTSAT 666
+ L T AT
Sbjct: 250 TNLLKTRAT 258
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 9e-17
Identities = 39/284 (13%), Positives = 69/284 (24%), Gaps = 84/284 (29%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+GL + VV+ +D+G+ + F+
Sbjct: 30 IGLTETTMSLTDK----NTPVVVSVVDSGVAFIGGLSDSE-----------FAKFSFTQ- 73
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVV 288
S HG+ AS+ A +GI
Sbjct: 74 --------------------------DGSPFPVKKSEALYIHGTAMASLIASRYGI---- 103
Query: 289 TGHHFGNASGMAPRSHIAVYKALYKSFGG---FAADVVAAIDQAAQDGVDIISLSITPNR 345
G+ P + I+ + + A + + + A II++S
Sbjct: 104 --------YGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKG 155
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG-----------------PSPKSMSSF 388
+V A GN G S++
Sbjct: 156 VASASVWTEL----LSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211
Query: 389 SPWIFTVGAASHDRIYTNSIILGNSLTISGVGL------APGTD 426
+ V A + R ++ G +T S G APG +
Sbjct: 212 QDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNWVDIAAPGQN 255
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
+ APG +I SGTS A ++G+ A + P + + +
Sbjct: 249 IAAPGQNITFLRP----------DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELK 298
Query: 659 SALSTSATLYDKNGG 673
L SA Y
Sbjct: 299 RTLLESADKYPSLVD 313
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 53/253 (20%), Positives = 84/253 (33%), Gaps = 81/253 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
G GV IDTG++ H F + SG DF
Sbjct: 24 ANFDGFGVTAYVIDTGVNNNHEEFGGRSV----------SGY-----DFVDND------- 61
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
A D +GHG+H A G+ G+A
Sbjct: 62 --------------------ADSSDCNGHGTHVAGTIGGSQ--------------YGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV--DIISLSITPNRRPPGIATFFNPIDM 359
+I + L S G + V++ +D AQ+ + ++S+ +D
Sbjct: 88 NVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLG--------GGQSTALDS 139
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ A ++G+ + AAGN+ SP P TVG+ S D + S G+
Sbjct: 140 AVQGAIQSGVSFMLAAGNSNADACNTSPAR----VPSGVTVGSTTSSDSRSSFSNW-GSC 194
Query: 414 LTISGVGLAPGTD 426
+ + APG+
Sbjct: 195 VDL----FAPGSQ 203
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 9e-13
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+L APG+ I +AW G + +SGTSMA PH+AG+AAL Q+ +P +
Sbjct: 196 DLFAPGSQIKSAWYDGGYKT----------ISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 658 ASALSTSAT 666
L++ A+
Sbjct: 246 TGLLNSRAS 254
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 84/278 (30%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
G V + +DT I H
Sbjct: 21 PPDGGSLVEVYLLDTSIQSDHREI-----------------------------------E 45
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
R + ++ + D HG+H A V +G +G+A
Sbjct: 46 GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAK 91
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDIISLSITPNRRPPGIATFFN 355
+ + + L G + + ++ + G ++ L + +
Sbjct: 92 GASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA--------GGYSR 143
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSII 409
++ A A+AG+ +V AAGN SP S +P + TVGA + D+ T +
Sbjct: 144 VLNAACQRLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGATNAQDQPVTLGTL 199
Query: 410 L---GNSLTISGVGLAPGTDKMYTLISALHALNNNTTT 444
G + + APG D +I A + +
Sbjct: 200 GTNFGRCVDL----FAPGED----IIGASSDCSTCFVS 229
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+L APG I A S T F SGTS AA H+AG+AA++ P + + +
Sbjct: 208 DLFAPGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAEL 259
Query: 658 ASALSTSAT 666
L +
Sbjct: 260 RQRLIHFSA 268
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 56/271 (20%), Positives = 86/271 (31%), Gaps = 87/271 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
Y G GV + IDTGI TH F A G D G+
Sbjct: 26 YTATGRGVNVYVIDTGIRTTHREFGGRAR----------VGY-----DALGGN------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
D +GHG+H A G G+A
Sbjct: 64 ----------------------GQDCNGHGTHVAGTIGGVT--------------YGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD--IISLSITPNRRPPGIATFFNPIDM 359
++ + L + G + V+A +D ++ + ++S+ +D
Sbjct: 88 AVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLG--------GGVSTALDN 139
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ ++ AG+ AAGN SP TVGA S D + S G+
Sbjct: 140 AVKNSIAAGVVYAVAAGNDNANACNYSPAR----VAEALTVGATTSSDARASFSNY-GSC 194
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTT 444
+ + APG + SA + + T T
Sbjct: 195 VDL----FAPGAS----IPSAWYTSDTATQT 217
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG SI +AW + T + ++GTSMA PH+AG+AAL ++ PS +P+++ASA
Sbjct: 199 APGASIPSAWYTSDTAT--------QTLNGTSMATPHVAGVAALYLEQNPSATPASVASA 250
Query: 661 LSTSAT 666
+ AT
Sbjct: 251 ILNGAT 256
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 59/258 (22%), Positives = 83/258 (32%), Gaps = 89/258 (34%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+AG G + IDTG++ THP F A + S
Sbjct: 27 DTSAGAGACVYVIDTGVEDTHPDFEGRAK----------QIK-----SYAST-------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
DG GHG+H A G+A
Sbjct: 64 ----------------------ARDGHGHGTHCAGTIGSKT--------------WGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD-------IISLSITPNRRPPGIATFF 354
+ I K L S G ++++A +D A D + S+S+ +
Sbjct: 88 KVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLG--------GGYS 139
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSI 408
++ A +G+FV AAGN SP S P + TVGA S+D T S
Sbjct: 140 AALNQAAARLQSSGVFVAVAAGNDNRDAANTSPAS----EPTVCTVGATDSNDVRSTFSN 195
Query: 409 ILGNSLTISGVGLAPGTD 426
G + I APGT
Sbjct: 196 Y-GRVVDI----FAPGTS 208
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG SI + W T++ +SGTSMA PHIAGLAA + S A+
Sbjct: 204 APGTSITSTWIGGRTNT----------ISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGR 252
Query: 661 LSTSAT 666
+ T +T
Sbjct: 253 IQTLST 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 56/256 (21%), Positives = 90/256 (35%), Gaps = 85/256 (33%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
E+AG+G + IDTGI+ +HP F A + S
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQ----------MVK-----TYYYSS------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
DG+GHG+H A G+A
Sbjct: 64 -----------------------RDGNGHGTHCAGTVGSRT--------------YGVAK 86
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD-------IISLSITPNRRPPGIATFF 354
++ + K L + G + ++A +D A D + + SLS+ +
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLG--------GGYS 138
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS-SFSPWIFTVGA-ASHDRI--YTNSIIL 410
+ ++ A +G+ V AAGN ++ S + P + TVGA +DR ++N
Sbjct: 139 SSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSN---Y 195
Query: 411 GNSLTISGVGLAPGTD 426
G+ L I PGTD
Sbjct: 196 GSVLDI----FGPGTD 207
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
PG I + W T S +SGTSMA PH+AGLAA + + + ++
Sbjct: 203 GPGTDILSTWIGGSTRS----------ISGTSMATPHVAGLAAYLMTLGKT-TAASACRY 251
Query: 661 LSTSAT 666
++ +A
Sbjct: 252 IADTAN 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 4e-12
Identities = 92/647 (14%), Positives = 183/647 (28%), Gaps = 198/647 (30%)
Query: 36 EPDDEITAVYIVTL---KQAPSVHRFAQELRRGNKNHGF------HKQNGTSGRLSRLNN 86
D + + KQ V +F +E+ R N+ F +Q S
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 87 PRNV--SISHPRSGYNISRVHDSI-LRRAF---KGEKYLKLYSYHYLINGF--SVFVTPQ 138
R+ + + + YN+SR+ + LR+A + K + + + G +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTW----- 165
Query: 139 QAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGA-WIQEGGYETAGEGVVIGFIDT- 196
+ +V + V+ + W+ + V+ +
Sbjct: 166 ----V-----ALDVCLSYKVQCK---------MDFKIFWLNLKNCNSPET--VLEMLQKL 205
Query: 197 --GIDPTHPSFADDASEHSYPVPSHFSGICEVTRD-FPSGSCNRKLIGARHFAASAITRG 253
IDP S +D HS + I R S L+ +
Sbjct: 206 LYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLLN 252
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP--RSHIAVYKAL 311
+ N+ + F+ +++T ++ +HI +L
Sbjct: 253 VQNAK--AWNAFN---------------LSCKILLTTRFKQVTDFLSAATTTHI----SL 291
Query: 312 YKSFGGFAADVVAAIDQAAQDGVDIIS--LSITPNRRPPGIATFFNPIDMALLSAAKAGI 369
D + ++ L P P + T NP +++++ +
Sbjct: 292 DHHSMTLTPD----------EVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESI--- 337
Query: 370 FVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK-M 428
++++ W H + I+ +SL + L P + M
Sbjct: 338 ------------RDGLATWDNW-------KHVNCDKLTTIIESSLNV----LEPAEYRKM 374
Query: 429 Y---------TLISA--LHALNNNTTTTDDM-YVGECQDSSNFNQDLVQGNLLICSYSIR 476
+ I L + + +D M V + S + + + I SI
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIY 432
Query: 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKIL--L 534
L K E L + + Y P F + +IP D +
Sbjct: 433 LEL-----KVKLENEYALHRSIVDHYNIP--KTFDSDD--------LIPPYLDQYFYSHI 477
Query: 535 QYYNSSLERDE--------------VTKKIIKFGAVACILGGL----------KANFSNS 570
++ ++E E + +KI G + K ++
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 571 APKIMYYSARGPDPEDSFL----------DDADIMKPNLVAPGNSIW 607
PK Y D FL D+++ L+A +I+
Sbjct: 538 DPK---YERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 61/447 (13%), Positives = 131/447 (29%), Gaps = 115/447 (25%)
Query: 16 VVL--LLGF----LVCTSFCRAQD-DSEPDDEITAVYIVTLKQAPSV-----------HR 57
V++ +LG + C + + D +I + + LK S ++
Sbjct: 153 VLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 58 FAQELRRGNKN--HGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNISR-VHDSILRRAFK 114
+ + + + + L RL + + + V ++ AF
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENC-LLVLLNVQNAKAWNAFN 263
Query: 115 GE-KYL-------------KLYSYHYLINGFSVFVTPQQAEKLSRRREVANV-VSDFSVR 159
K L + H ++ S+ +TP + + L + + D R
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLP-R 320
Query: 160 TATTHTPQFLGLPQGAWIQEG-----GYETAGEGVVIGFIDTGIDPTHPS---------- 204
T P+ L + I++G ++ + I++ ++ P+
Sbjct: 321 EVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 205 -FADDASEHSYPVPSH------FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNS 257
F A +P+ F I + L+ + S I+ I +
Sbjct: 380 VFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTIS--IPSI 431
Query: 258 SQDYASPFDGDGHGSHTASVAA--------GNHGIPVVV-------TGHHFGNASGMAPR 302
+ + + H + V + IP + GHH N R
Sbjct: 432 YLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPER 489
Query: 303 SHIAVYKALYKSFG---------GFAADVVAAIDQAAQDGVDIISLSITPN-----RRPP 348
+ +++ ++ F A + +I Q + I N R
Sbjct: 490 --MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVN 546
Query: 349 GIATFFNPIDMALLSAAKAGIFVVQAA 375
I F I+ L+ + + ++ A
Sbjct: 547 AILDFLPKIEENLICSKYTDL--LRIA 571
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 8e-12
Identities = 44/265 (16%), Positives = 72/265 (27%), Gaps = 67/265 (25%)
Query: 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
W G GVV +D G+D + D G
Sbjct: 45 DLWYNN----ITGAGVVAAIVDDGLDYENEDLKD--------------------NFCAEG 80
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASP-FDGDGHGSHTASV--AAGNHGIPVVVTG 290
S + FN + + P D HG+ A A + V
Sbjct: 81 SWD------------------FNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGV--- 119
Query: 291 HHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS-----ITPNR 345
G+ + I+ + L S D A++ D DI S S +
Sbjct: 120 -------GVGYNAKISGIRIL--SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHL 169
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAASHD 401
+ P + G V A+GN G + + + S + T+GA H
Sbjct: 170 QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK 229
Query: 402 RIYTNSIILGNSLTISGVGLAPGTD 426
++ +++ G
Sbjct: 230 DLHPPYSEGCSAVMAVTYSSGSGEY 254
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 605 SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664
+++ S S + G GTS AAP AG+ L+ + P+ + + S
Sbjct: 245 VTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILS 304
Query: 665 ATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVF 713
A +KN A K ++ G G ++A ++ +
Sbjct: 305 AVGLEKNADGDWRDSAMGKKYSHR-------YGFGKIDAHKLIEMSKTW 346
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 45/283 (15%), Positives = 72/283 (25%), Gaps = 66/283 (23%)
Query: 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
AW Q G G+V+ +D GI+ HP A P
Sbjct: 29 EAWAQGFT----GHGIVVSILDDGIEKNHPDLAG--------------------NYDPGA 64
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASV--AAGNHGIPVVVTGH 291
S + Q + + + HG+ A A N+G+ V
Sbjct: 65 SFD--------------VNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGV---- 106
Query: 292 HFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNR-----R 346
G+A + I + L G V A + + I S S P
Sbjct: 107 ------GVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVD 157
Query: 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG----PSPKSMSSFSPWIFTVGAASHDR 402
P G V A+GN G + S + ++ +A+
Sbjct: 158 GPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFG 217
Query: 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
+S + + L T +
Sbjct: 218 NVPWYSEACSSTLAT----TYSSGNQNEKQIVTTDLRQKCTES 256
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV-APGNSIWAAWSSLGTDSVEFQGE 623
N I S + ++ L + + TD + +
Sbjct: 196 CNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDL---RQK 252
Query: 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAK 683
+GTS +AP AG+ AL + + + + + ++ N K
Sbjct: 253 CTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK 312
Query: 684 PDENQSPATPFDMGSGFVNATA 705
G G ++A A
Sbjct: 313 VSH--------SYGYGLLDAGA 326
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 718 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.92 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.87 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.14 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.49 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.28 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.12 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.01 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.17 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.46 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 92.61 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 89.72 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 88.73 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=696.17 Aligned_cols=493 Identities=35% Similarity=0.553 Sum_probs=415.4
Q ss_pred CCCCCccCCC--cccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceee
Q 005034 163 THTPQFLGLP--QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLI 240 (718)
Q Consensus 163 ~~~~~~~~~~--~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (718)
++++++++++ ..+|.. +.+|+||+|||||||||++||+|.+... .+++..|++.|+.+.+|....||+|++
T Consensus 2 t~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~g~---~p~p~~wkg~c~~g~~f~~~~cN~kii 74 (649)
T 3i6s_A 2 THTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDDGM---PEIPKRWKGICKPGTQFNASMCNRKLI 74 (649)
T ss_dssp CSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCBTTBCTTSCCSSEE
T ss_pred CCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccCCC---CCCccccccccccCcccccccccccee
Confidence 4566777876 347887 6899999999999999999999999865 678899999999999999999999999
Q ss_pred eeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHH
Q 005034 241 GARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAA 320 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~ 320 (718)
+.++|..+..... .+...+..++.|.+||||||||||+|+.+++....|...+.+.||||+|+|+.+|+++. .++..+
T Consensus 75 g~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~ 152 (649)
T 3i6s_A 75 GANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN-EGTFTS 152 (649)
T ss_dssp EEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEET-TEECHH
T ss_pred eeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCC-CCCCHH
Confidence 9999998765443 34445566788999999999999999987766666666677899999999999999987 348899
Q ss_pred HHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeecc
Q 005034 321 DVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 321 ~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~ 400 (718)
++++||+||+++|++|||||||.... ..+.+.+..++..|.++|++||+||||+|....++++.+||+|+|||++.
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~~----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~ 228 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRFI----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSC----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCCc----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeec
Confidence 99999999999999999999998632 44678899999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEeCCCceEeeeccCCCC--CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCc--CceEEEEEeecc
Q 005034 401 DRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLV--QGNLLICSYSIR 476 (718)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~--~g~i~~~~~~~~ 476 (718)
++.|+..+.+++++++.+..+.... ...||++++. ....|.. ..++...+ +|||++|.+
T Consensus 229 dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-------------~~~~C~~-~~l~~~~vdl~GkIvlc~~--- 291 (649)
T 3i6s_A 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-------------TLSDCSS-EELLSQVENPENTIVICDD--- 291 (649)
T ss_dssp SCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-------------TTTTCCC-HHHHTTSSSGGGCEEEECC---
T ss_pred ccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-------------ccccccc-ccccccccccCCcEEEEeC---
Confidence 9999999999999999999988765 6678988754 2456763 33555556 999999998
Q ss_pred cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (718)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (718)
+.+.+.++..+++.+|+.|+|++++. .........+|.+++ ...++..|+.|+++.... +
T Consensus 292 ---g~~~~~~k~~~~~~~Ga~g~i~~n~~----~~~~~~~~~~P~~~v-~~~~g~~i~~yi~s~~~~------------~ 351 (649)
T 3i6s_A 292 ---NGDFSDQMRIITRARLKAAIFISEDP----GVFRSATFPNPGVVV-NKKEGKQVINYVKNSVTP------------T 351 (649)
T ss_dssp ---CSCHHHHHHHHHHHTCSEEEEECCCG----GGGGCCCCCSCEEEE-CHHHHHHHHHHHHTCSSC------------E
T ss_pred ---CCccHHHHHHHHHhcCceEEEEecCc----cccccccCcCCEEEE-cHHHHHHHHHHHhcCCCc------------e
Confidence 57789999999999999999999987 233455678899887 478899999999886532 2
Q ss_pred EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccc----cCccccccCchh
Q 005034 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEF----QGESFAMMSGTS 632 (718)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sGTS 632 (718)
.++....+.......+.+++||||||+.+ .++++||||+|||++|+++++......... ....|..+||||
T Consensus 352 a~i~~~~t~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTS 426 (649)
T 3i6s_A 352 ATITFQETYLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTS 426 (649)
T ss_dssp EEEEEEEEECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHH
T ss_pred EEEeecceeeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccc
Confidence 33333333334566789999999999985 468999999999999999997643321110 225899999999
Q ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCee
Q 005034 633 MAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV 712 (718)
Q Consensus 633 mAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~ 712 (718)
||||||||++|||+|+||+|+|++||++||+||.+++..+.|+.+.. ...++.++.||+|+||+.+|++++||
T Consensus 427 MAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~-------~~~~a~~~~~GaG~vn~~~A~~pGLv 499 (649)
T 3i6s_A 427 MAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD-------NNKAATPLDMGAGHVDPNRALDPGLV 499 (649)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT-------TSSBCCHHHHTTCBCCHHHHTCCSEE
T ss_pred cccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc-------cCCcCCcCCCCeeeeCHHHhcCcccc
Confidence 99999999999999999999999999999999999999888887642 35677889999999999999999999
Q ss_pred eeccC
Q 005034 713 FDASK 717 (718)
Q Consensus 713 ~~~~~ 717 (718)
||.+.
T Consensus 500 yd~~~ 504 (649)
T 3i6s_A 500 YDATP 504 (649)
T ss_dssp CCCCH
T ss_pred ccCCc
Confidence 99863
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-74 Score=658.34 Aligned_cols=483 Identities=34% Similarity=0.562 Sum_probs=391.5
Q ss_pred CCCCCccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeee
Q 005034 163 THTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242 (718)
Q Consensus 163 ~~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 242 (718)
+++++|+++++..|.. ..+|+||+|||||||||++||+|.+... .+++..|++.|+.+.+| .||+|+++.
T Consensus 2 t~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~g~---~~~~~~w~g~~~~~~~~---~~n~k~ig~ 71 (621)
T 3vta_A 2 TRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDEGF---SPPPPKWKGTCETSNNF---RCNRKIIGA 71 (621)
T ss_dssp CSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCSSSC---CCCSSEEEE
T ss_pred CCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCCCC---CCcccccccccccCCCc---ccCcceeee
Confidence 4667889998877766 5789999999999999999999998765 77888999999998877 499999999
Q ss_pred eecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHH
Q 005034 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADV 322 (718)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i 322 (718)
++|..+.. ....+...+.|.+||||||||||||+........|...+.++||||+|+|+++|++.. .++..+++
T Consensus 72 ~~~~~~~~-----~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~di 145 (621)
T 3vta_A 72 RSYHIGRP-----ISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTDI 145 (621)
T ss_dssp EECCCSSS-----CCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEET-TEECHHHH
T ss_pred eecccCCc-----cCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecC-CCCCHHHH
Confidence 99976521 1223445678999999999999999876665555666667899999999999999987 56788999
Q ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCC
Q 005034 323 VAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDR 402 (718)
Q Consensus 323 ~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~ 402 (718)
++||+||+++|++|||||||+..+. ..+.+.+..++..+.++||++|+||||+|....++++.+||+++|++.+.++
T Consensus 146 ~~a~~~a~~~g~dVin~SlG~~~~~---~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~ 222 (621)
T 3vta_A 146 LAAYDDAIADGVDIISLSVGGANPR---HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR 222 (621)
T ss_dssp HHHHHHHHHHTCSEEEECCCCCCGG---GGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSE
T ss_pred HHHHHHHHHhCCCEEEecCCCCCCC---CcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccc
Confidence 9999999999999999999986543 3456788899999999999999999999999999999999999999999999
Q ss_pred ceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcc
Q 005034 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS 482 (718)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 482 (718)
.+......+++..+.+..+.......++++........... ......|. ...++...++|+|++|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~v~gkivl~~~~-------- 290 (621)
T 3vta_A 223 KFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFD---KSTSRFCT-DKSVNPNLLKGKIVVCEAS-------- 290 (621)
T ss_dssp EEEEEEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTTCC---HHHHTTTC-TTCSCGGGTTTSEEECSSC--------
T ss_pred cceeeEEeccCceeeeeecccCCCccccccccccccccccc---cccccccc-ccccccccccceEEEEecC--------
Confidence 99999999999999999988777788888877654432221 12234454 4567778899999999763
Q ss_pred hHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecc
Q 005034 483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562 (718)
Q Consensus 483 ~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (718)
+..+.......|+.+++++++... ....+.+|...+ ...++..+..|........ ..+...
T Consensus 291 -~~~~~~~~~~~Ga~gvi~~~~~~~-----~~~~~~lP~~~v-~~~~g~~i~~~~~~~~~~~------------a~~~~~ 351 (621)
T 3vta_A 291 -FGPHEFFKSLDGAAGVLMTSNTRD-----YADSYPLPSSVL-DPNDLLATLRYIYSIRSPG------------ATIFKS 351 (621)
T ss_dssp -CCHHHHHHHHTTCSEEEEECSCCS-----SCCCCSSSEEEE-CHHHHHHHHHHHHHHSSCC------------EEECCC
T ss_pred -CChhHHhhhhcceeEEEEEecCCC-----cccccccceEEE-CHHHHHHHHHHHhccCCcc------------eEEecc
Confidence 224456677889999999987642 234566888776 5677888888887654322 111111
Q ss_pred cccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHH
Q 005034 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642 (718)
Q Consensus 563 ~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 642 (718)
. .......+.++.||||||+.. .++++||||+|||++|+|+++..........+..|..|||||||||||||++
T Consensus 352 ~-~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGva 425 (621)
T 3vta_A 352 T-TILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIA 425 (621)
T ss_dssp E-EEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHH
T ss_pred e-EeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHH
Confidence 1 123455678999999999874 3579999999999999999986554333335668999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeccC
Q 005034 643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASK 717 (718)
Q Consensus 643 ALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~ 717 (718)
|||||+||+|+|++||++||+||++++..+. ++.++.||+|+||+.+|++++||||++.
T Consensus 426 ALl~q~~P~~spa~IksaLmtTA~~~~~~~~----------------~~~~~~~GaG~v~~~~A~~pGLvyd~~~ 484 (621)
T 3vta_A 426 TYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHVNPLKAVRPGLVYDANE 484 (621)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHTCBCCCTTTC----------------TTTHHHHTTCBCCHHHHSCCSEECCCCG
T ss_pred HHHHHHCCCCCHHHHHHHHHhcCCcccccCC----------------CCCchhcCCCccCHHHhcCCCeEeeccc
Confidence 9999999999999999999999998865544 4557889999999999999999999864
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-63 Score=589.42 Aligned_cols=442 Identities=21% Similarity=0.276 Sum_probs=330.3
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCcccccc----------CCCCCCCCCc
Q 005034 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVT----------RDFPSGSCNR 237 (718)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 237 (718)
.++++. +|.. +++|+||+|||||||||++||+|..... |++.|..+ ......+||+
T Consensus 3 ~i~~~~-~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~n~ 68 (926)
T 1xf1_A 3 PSQVKT-LQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTDK---------TKARYQSKEDLEKAKKEHGITYGEWVND 68 (926)
T ss_dssp TTCCHH-HHHH----HCSCTTCEEEEEESCCTTCCCCCSCCSC---------CCSSCCHHHHHHHHHHTTTCCCCBCCSS
T ss_pred ccccHH-HHhc----cCCCCCcEEEEEecCCCCCCHhHcCCCC---------CcccccchhhhcccccccCcccccccCc
Confidence 455555 8877 6899999999999999999999996432 33333221 1123347999
Q ss_pred eeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-
Q 005034 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG- 316 (718)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~- 316 (718)
|+++.++|..+ ....|..||||||||||+|+...... ..+++.||||+|+|+++|++...+.
T Consensus 69 Kii~~~~~~~~-------------~~~~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~g~~ 131 (926)
T 1xf1_A 69 KVAYYHDYSKD-------------GKTAVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGLA 131 (926)
T ss_dssp SCCEEEESCCC-------------SCCCCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCSCHH
T ss_pred ccceeeccccC-------------CCCCCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCCCCC
Confidence 99999998753 12228899999999999998633211 1246789999999999999987433
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC--------------
Q 005034 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-------------- 382 (718)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-------------- 382 (718)
+...++++||+||+++|++|||||||...... ..+.+.+..+++.|.++|++||+||||+|...
T Consensus 132 ~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~--~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~ 209 (926)
T 1xf1_A 132 DYARNYAQAIRDAINLGAKVINMSFGNAALAY--ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYG 209 (926)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCSSCCCTT--CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCB
T ss_pred CcHHHHHHHHHHHHHhCCcEEEECCCCCCCCc--cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcc
Confidence 34578999999999999999999999864321 23567889999999999999999999999631
Q ss_pred -CCCCCCCCceEEEeeeccCCceeeeEEe-CCCceEeeecc---CCC-CCceEEEEEcccccCCCCcccCCccccccCCC
Q 005034 383 -KSMSSFSPWIFTVGAASHDRIYTNSIIL-GNSLTISGVGL---APG-TDKMYTLISALHALNNNTTTTDDMYVGECQDS 456 (718)
Q Consensus 383 -~~~~~~~~~vitVgA~~~~~~~~~~~~~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 456 (718)
...|+.++|+|+|||++.++.+...+.+ +++....+..+ .+. ....|++++... .|. .
T Consensus 210 tv~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~---------------g~~-~ 273 (926)
T 1xf1_A 210 VVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR---------------GTK-E 273 (926)
T ss_dssp CCCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT---------------SCS-T
T ss_pred eecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC---------------CCC-c
Confidence 2345668999999999999888887776 44433222221 222 256788876532 354 2
Q ss_pred CCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHH
Q 005034 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQY 536 (718)
Q Consensus 457 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 536 (718)
..+ .+++|||++|.| +.|.+.++..++..+|+.|+|++++..............+|..++ +..++..|..
T Consensus 274 ~~~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i-~~~~g~~l~~- 343 (926)
T 1xf1_A 274 DDF--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFI-SRKDGLLLKD- 343 (926)
T ss_dssp TTT--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEE-CHHHHHHHHH-
T ss_pred cch--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEE-eHHHHHHHHh-
Confidence 223 579999999988 578899999999999999999998765322223345567888777 4556666653
Q ss_pred HhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC
Q 005034 537 YNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD 616 (718)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~ 616 (718)
.. ...+++..+. ........+.++.||||||+.+ +++||||+|||++|+|++
T Consensus 344 ---~~------~~ti~~~~~~------~~~~~~~~~~~a~FSSrGp~~~-------~~lKPDI~APG~~I~sa~------ 395 (926)
T 1xf1_A 344 ---NP------QKTITFNATP------KVLPTASGTKLSRFSSWGLTAD-------GNIKPDIAAPGQDILSSV------ 395 (926)
T ss_dssp ---CS------SCEEEECSSC------EEEECSSCSBCCTTSCCCBCTT-------SCBSCCEEEECCCEEESS------
T ss_pred ---CC------ceEEEecccc------eecccCCcceeccccCCCCCCC-------CccCceEECCCCCEEeec------
Confidence 11 1122222211 1112344578999999999976 799999999999999999
Q ss_pred CccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHHH----HHHHHHhcccccccCCCccccccccCCCCCCC
Q 005034 617 SVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQ 688 (718)
Q Consensus 617 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 688 (718)
+++.|..+||||||||||||++|||+| ++|+|+|+| ||++||+||+++...+. .
T Consensus 396 ----~~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~--------------~ 457 (926)
T 1xf1_A 396 ----ANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE--------------K 457 (926)
T ss_dssp ----SCSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG--------------T
T ss_pred ----cCCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC--------------C
Confidence 456899999999999999999999964 699999997 99999999998754321 2
Q ss_pred CCCCCCccccccccccccCCCCeeee
Q 005034 689 SPATPFDMGSGFVNATASLDPGLVFD 714 (718)
Q Consensus 689 ~~~~~~~~G~G~vn~~~Al~~~l~~~ 714 (718)
.++++++||+|+||+.+|+++.+++.
T Consensus 458 ~~~~~~~~G~G~vn~~~A~~~~~~l~ 483 (926)
T 1xf1_A 458 AYFSPRQQGAGAVDAKKASAATMYVT 483 (926)
T ss_dssp EECCHHHHTTCBCCHHHHHHCSEEEE
T ss_pred ccCChhccCCCccCHHHhcCCCeEEE
Confidence 23567899999999999999988764
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-59 Score=528.40 Aligned_cols=339 Identities=32% Similarity=0.503 Sum_probs=272.3
Q ss_pred CceEEEEecceeeeEEEEeCHHHHHHH-----------hcCCCeEEEEeCceeccccCCC-----CCccCCCcccccccC
Q 005034 117 KYLKLYSYHYLINGFSVFVTPQQAEKL-----------SRRREVANVVSDFSVRTATTHT-----PQFLGLPQGAWIQEG 180 (718)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~~~~L-----------~~~p~V~~v~~~~~~~~~~~~~-----~~~~~~~~~~w~~~~ 180 (718)
+.++.++|. .++||+++++.+++++| +++|+|++||++..+++..... ...++++. +|..
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 134 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATN-MWNL-- 134 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSC-CBCC--
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHh-HHhc--
Confidence 467888996 79999999999999999 8999999999999987753321 12233333 5665
Q ss_pred CCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCC
Q 005034 181 GYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQD 260 (718)
Q Consensus 181 ~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 260 (718)
+++|+||+|||||||||++||+|.++ +++.++|..+
T Consensus 135 --g~~G~gv~VaViDtGid~~Hpdl~~~------------------------------i~~~~d~~~~------------ 170 (539)
T 3afg_A 135 --GYDGSGITIGIIDTGIDASHPDLQGK------------------------------VIGWVDFVNG------------ 170 (539)
T ss_dssp --SCCCTTCEEEEEESBCCTTSGGGTTT------------------------------EEEEEETTTC------------
T ss_pred --CCCCCCcEEEEEecCCCCCChHHhCC------------------------------EeeeEECCCC------------
Confidence 78999999999999999999999863 3344555432
Q ss_pred CCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC----CCCE
Q 005034 261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDI 336 (718)
Q Consensus 261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~V 336 (718)
...+.|.+||||||||||+|..+.. .+.+.||||+|+|+.+|+++..+.+..++++++|+||+++ |++|
T Consensus 171 ~~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~V 243 (539)
T 3afg_A 171 KTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKV 243 (539)
T ss_dssp CSSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEE
T ss_pred CCCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcE
Confidence 1345688999999999999874321 1346899999999999999875667889999999999986 8999
Q ss_pred EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC--CCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
||||||..... ...+.+.++++.+.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 244 in~SlG~~~~~----~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~------------- 306 (539)
T 3afg_A 244 INLSLGSSQSS----DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY------------- 306 (539)
T ss_dssp EEECCCCCSCC----CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-------------
T ss_pred EEeCCCCCCCC----ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-------------
Confidence 99999986532 2357888999999999999999999999754 4567889999999996421
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+.+
T Consensus 307 -----------------------------------------------------------------------------~~~ 309 (539)
T 3afg_A 307 -----------------------------------------------------------------------------DVI 309 (539)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 236
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 654 (718)
++|||+||+.+ +++||||+|||++|+++++...... ......|..++|||||||||||++|||+|++|+|++
T Consensus 310 a~fSs~Gp~~~-------~~~kpdi~APG~~I~s~~~~~~~~~-~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~ 381 (539)
T 3afg_A 310 TDFSSRGPTAD-------NRLKPEVVAPGNWIIAARASGTSMG-QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTP 381 (539)
T ss_dssp CSSSCCCCCTT-------CBCCCSEEEECSSEEEECCTTCCCS-EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred ccccCCCCCCC-------CCCcccEecCcCCEEeeccCCCCCC-CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCH
Confidence 88999999986 7999999999999999986432100 011236999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCC
Q 005034 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPG 710 (718)
Q Consensus 655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 710 (718)
++||++|++||++++..+ .++..||+|+||+.+||+..
T Consensus 382 ~~vk~~L~~tA~~~~~~~------------------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 382 DKVKTALIETADIVKPDE------------------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHSBCSSGGG------------------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHhhCccCCCCC------------------CCccCccCCccCHHHHhhhc
Confidence 999999999999875332 13568999999999999854
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=503.34 Aligned_cols=320 Identities=25% Similarity=0.375 Sum_probs=261.7
Q ss_pred CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccCCC-----------CCc-----cCCCccccccc
Q 005034 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHT-----------PQF-----LGLPQGAWIQE 179 (718)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~-----------~~~-----~~~~~~~w~~~ 179 (718)
.+.++.++|. .++++.++++++.+++|+++|+|++||++..+++..... ... ++++. +|..
T Consensus 22 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~-~w~~- 98 (395)
T 2z2z_A 22 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPS-VWSI- 98 (395)
T ss_dssp TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGG-GGGT-
T ss_pred cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHH-HHhh-
Confidence 3668889996 599999999999999999999999999999887643211 111 22222 5665
Q ss_pred CCCCCCCCC--cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCC
Q 005034 180 GGYETAGEG--VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNS 257 (718)
Q Consensus 180 ~~~~~~G~g--v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 257 (718)
+ +|+| |+|||||||||++||+|.++.. ..++|..+.. .
T Consensus 99 ---~-~G~g~~v~VaViDtGid~~Hp~l~~~~~------------------------------~~~~~~~~~~-----~- 138 (395)
T 2z2z_A 99 ---T-DGSVSVIQVAVLDTGVDYDHPDLAANIA------------------------------WCVSTLRGKV-----S- 138 (395)
T ss_dssp ---C-SSCCTTCEEEEEESCBCTTCTTTGGGEE------------------------------EEEECGGGCC-----B-
T ss_pred ---c-CCCCCcEEEEEEcCCCCCCChhHhhccc------------------------------cCccccCCcc-----c-
Confidence 4 8999 9999999999999999997432 2333333210 0
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC-----
Q 005034 258 SQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----- 332 (718)
Q Consensus 258 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~----- 332 (718)
.+..+..|.+||||||||||+|..+ + .++.||||+|+|+.+|+++..+.+..++++++|+||+++
T Consensus 139 -~~~~~~~d~~gHGT~vAgiia~~~n-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~ 208 (395)
T 2z2z_A 139 -TKLRDCADQNGHGTHVIGTIAALNN-D--------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA 208 (395)
T ss_dssp -CCHHHHBCSSSHHHHHHHHHHCCCS-S--------SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCS
T ss_pred -CCCCCCCCCCCCHHHHHHHHHeecC-C--------CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccc
Confidence 0001235788999999999999742 1 346899999999999999875667889999999999998
Q ss_pred ---------------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEee
Q 005034 333 ---------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA 397 (718)
Q Consensus 333 ---------------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA 397 (718)
+++|||||||.... ...+.++++.+.++|++||+||||+|.....+|+..+++|+|||
T Consensus 209 ~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga 281 (395)
T 2z2z_A 209 DKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281 (395)
T ss_dssp STTCSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEE
T ss_pred cccccccccccccCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEE
Confidence 99999999997542 35788889999999999999999999988889999999999999
Q ss_pred eccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeeccc
Q 005034 398 ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRF 477 (718)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~ 477 (718)
++.+
T Consensus 282 ~~~~---------------------------------------------------------------------------- 285 (395)
T 2z2z_A 282 IDSN---------------------------------------------------------------------------- 285 (395)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred ecCC----------------------------------------------------------------------------
Confidence 7432
Q ss_pred ccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeE
Q 005034 478 VLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVA 557 (718)
Q Consensus 478 ~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (718)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHH
Q 005034 558 CILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPH 637 (718)
Q Consensus 558 ~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 637 (718)
+.+++||++|| +|+|||++|+|++ +++.|..++||||||||
T Consensus 286 --------------~~~a~fS~~G~---------------~v~APG~~i~s~~----------~~~~y~~~sGTS~AaP~ 326 (395)
T 2z2z_A 286 --------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYETLMGTAMATPH 326 (395)
T ss_dssp --------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEEEEESHHHHHHH
T ss_pred --------------CCCCcccCCCC---------------CEEeCCCCeeeec----------CCCceEecCCHHHHHHH
Confidence 23688999997 6899999999998 56689999999999999
Q ss_pred HHHHHHHHHHhCC-------------CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034 638 IAGLAALIKQKFP-------------SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (718)
Q Consensus 638 VAG~aALl~q~~p-------------~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 704 (718)
|||++|||+|++| .|++.+||++|++||+++...+. ++.||||+||+.
T Consensus 327 VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g~-------------------~~~~G~G~vd~~ 387 (395)
T 2z2z_A 327 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW-------------------DADYGYGVVRAA 387 (395)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSSS-------------------BTTTBTCBCCHH
T ss_pred HHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCCC-------------------CCCccCceeCHH
Confidence 9999999999999 99999999999999998754332 578999999999
Q ss_pred ccCCC
Q 005034 705 ASLDP 709 (718)
Q Consensus 705 ~Al~~ 709 (718)
+||+.
T Consensus 388 ~A~~~ 392 (395)
T 2z2z_A 388 LAVQA 392 (395)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-55 Score=487.85 Aligned_cols=338 Identities=21% Similarity=0.264 Sum_probs=262.7
Q ss_pred CCceEEEEecceeeeEEEEeCHHHHHHHhc-CCCeEEEEeCceeccccCCCCC----------cc-----CCCccccccc
Q 005034 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSR-RREVANVVSDFSVRTATTHTPQ----------FL-----GLPQGAWIQE 179 (718)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~~~~----------~~-----~~~~~~w~~~ 179 (718)
.+.+++++|. .+++|.++++++++++|++ +|+|++|+++..+++....... .| ..+..+|..
T Consensus 64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~- 141 (471)
T 3t41_A 64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD- 141 (471)
T ss_dssp HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG-
T ss_pred CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc-
Confidence 4667888885 5999999999999999999 9999999999888775432211 11 122235654
Q ss_pred CCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 005034 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (718)
Q Consensus 180 ~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 259 (718)
+++|+||+|||||||||++||+|.++...... .++....|... ..+...
T Consensus 142 ---~~~G~gv~VaViDtGid~~Hp~~~~~~~~~~~-----------------------~~~~~~~~~~~-----~~~~~~ 190 (471)
T 3t41_A 142 ---LPKHANTKIAIIDTGVMKNHDDLKNNFSTDSK-----------------------NLVPLNGFRGT-----EPEETG 190 (471)
T ss_dssp ---CCSSCCCCEEEEESCCCTTCTTTTTTBCTTCE-----------------------ECCCTTCGGGC-----CTTCCC
T ss_pred ---cCCCCCcEEEEEeCCCCCCChhHhcCcccCCc-----------------------ccccCCCccCC-----CcccCC
Confidence 68999999999999999999999986541000 00000111110 011112
Q ss_pred CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 005034 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (718)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~ 339 (718)
+...+.|..||||||||||+|+. .+.||||+|+|+.+|+++. ..+...++++||+|+++++++||||
T Consensus 191 ~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~-~~~~~~~i~~ai~~a~~~g~~Vin~ 257 (471)
T 3t41_A 191 DVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQVINI 257 (471)
T ss_dssp CTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSS-SCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccC-CCCcHHHHHHHHHHHHhCCCCEEEe
Confidence 23456788999999999999873 3579999999999999987 6688899999999999999999999
Q ss_pred cCCCCCCCC----C-----CCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC------------------CCCCCCce
Q 005034 340 SITPNRRPP----G-----IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS------------------MSSFSPWI 392 (718)
Q Consensus 340 S~G~~~~~~----~-----~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~------------------~~~~~~~v 392 (718)
|||...... . .....+.+.++++.+.++|++||+||||+|..... +|+..+++
T Consensus 258 S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~v 337 (471)
T 3t41_A 258 SVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNV 337 (471)
T ss_dssp CCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTE
T ss_pred CCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCe
Confidence 999732100 0 01234678899999999999999999999986542 67778889
Q ss_pred EEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEE
Q 005034 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (718)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~ 472 (718)
|+|||++.+
T Consensus 338 itVgA~~~~----------------------------------------------------------------------- 346 (471)
T 3t41_A 338 VTVGSTDQK----------------------------------------------------------------------- 346 (471)
T ss_dssp EEEEEECTT-----------------------------------------------------------------------
T ss_pred EEEEeeCCC-----------------------------------------------------------------------
Confidence 999886432
Q ss_pred eecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeee
Q 005034 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (718)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (718)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCc----------------------eeecc
Q 005034 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS----------------------IWAAW 610 (718)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~----------------------I~Sa~ 610 (718)
+.++.||++||+. |||+|||++ |++++
T Consensus 347 -------------------~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~ 395 (471)
T 3t41_A 347 -------------------SNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA 395 (471)
T ss_dssp -------------------SSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEEC
T ss_pred -------------------CCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEecC
Confidence 2468899999963 399999987 78887
Q ss_pred cCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCC
Q 005034 611 SSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP-SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQS 689 (718)
Q Consensus 611 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 689 (718)
+++.|..++|||||||||||++|||+|++| .++|++||++|++||++...
T Consensus 396 ----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------------- 446 (471)
T 3t41_A 396 ----------NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------------- 446 (471)
T ss_dssp ----------TTSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------------
T ss_pred ----------CCCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------------
Confidence 566899999999999999999999999999 89999999999999987643
Q ss_pred CCCCCccccccccccccCCCCe
Q 005034 690 PATPFDMGSGFVNATASLDPGL 711 (718)
Q Consensus 690 ~~~~~~~G~G~vn~~~Al~~~l 711 (718)
.++..||||+||+.+||+...
T Consensus 447 -~~~~~~G~G~vd~~~Al~~a~ 467 (471)
T 3t41_A 447 -KPFSRYGHGELDVYKALNVAN 467 (471)
T ss_dssp -CCHHHHTTCBBCHHHHTTTTC
T ss_pred -CCcCccccChhCHHHHHHHHH
Confidence 235689999999999998654
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-54 Score=491.09 Aligned_cols=339 Identities=23% Similarity=0.295 Sum_probs=255.7
Q ss_pred CceEEEEecceeeeEEEEeCH----HHHHHHh--cCCCeEEEEeCceecccc----CCC---------------------
Q 005034 117 KYLKLYSYHYLINGFSVFVTP----QQAEKLS--RRREVANVVSDFSVRTAT----THT--------------------- 165 (718)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~----~~~~~L~--~~p~V~~v~~~~~~~~~~----~~~--------------------- 165 (718)
+.++.+++. .+++++++++. +.+++|+ ++|+|++|||+..+++.. ...
T Consensus 52 g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 346777775 68899999865 3456776 489999999997765431 000
Q ss_pred --CCc-----cCCCccc-ccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCc
Q 005034 166 --PQF-----LGLPQGA-WIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNR 237 (718)
Q Consensus 166 --~~~-----~~~~~~~-w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (718)
... ++++. + |.. ++|+||+|||||||||++||+|.++.. .
T Consensus 131 ~~~~~W~l~~I~~~~-a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~~~----------~---------------- 178 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQ-QLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVI----------A---------------- 178 (671)
T ss_dssp TGGGCHHHHHTTCCH-HHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBC----------C----------------
T ss_pred ccccCCchhccCCch-hhhhc-----cCCCCCEEEEEeCCCCCCCccccccEE----------e----------------
Confidence 001 22223 3 654 789999999999999999999997643 0
Q ss_pred eeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccC---
Q 005034 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS--- 314 (718)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~--- 314 (718)
+...+.+. .. ....+..|.+||||||||||+|..+. .++.||||+|+|+.+|+++..
T Consensus 179 ---g~~~~~~~------~~--p~~~d~~d~~gHGThVAGiIAa~~ng---------~gv~GVAP~A~I~~vkv~~~~~~~ 238 (671)
T 1r6v_A 179 ---GYRPAFDE------EL--PAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALV 238 (671)
T ss_dssp ---EEEGGGTE------EE--CTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHH
T ss_pred ---cccccCCC------cC--CCCCCCccCCCcchhhhhhhhccCCC---------CceEEECCCCEEEEEEeccCcccc
Confidence 00000000 00 00122346789999999999997421 356899999999999999761
Q ss_pred -CC--CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCC
Q 005034 315 -FG--GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSP 390 (718)
Q Consensus 315 -~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~ 390 (718)
.. .....+++||+||+++|++|||||||... +...+.++++.+.++|++||+||||+|.+. ..+|+..+
T Consensus 239 ~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~ 311 (671)
T 1r6v_A 239 GGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYP 311 (671)
T ss_dssp CTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTST
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCC
Confidence 12 34567899999999999999999999743 346788999999999999999999999875 67888999
Q ss_pred ceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEE
Q 005034 391 WIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLI 470 (718)
Q Consensus 391 ~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~ 470 (718)
++|+|||++.++.
T Consensus 312 ~VItVgA~d~~g~------------------------------------------------------------------- 324 (671)
T 1r6v_A 312 GVIQVAALDYYGG------------------------------------------------------------------- 324 (671)
T ss_dssp TCEEEEEEEEETT-------------------------------------------------------------------
T ss_pred CeEEEEEEcCCCC-------------------------------------------------------------------
Confidence 9999999753211
Q ss_pred EEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCcccccee
Q 005034 471 CSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKI 550 (718)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 550 (718)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCC--------ccccC
Q 005034 551 IKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS--------VEFQG 622 (718)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~ 622 (718)
...+++|||+||.. ||+|||++|+|+++...... ....+
T Consensus 325 --------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~ 371 (671)
T 1r6v_A 325 --------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp --------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred --------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence 01268899999976 99999999999986532110 01124
Q ss_pred ccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 005034 623 ESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVN 702 (718)
Q Consensus 623 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn 702 (718)
+.|..++|||||||||||++|||+|++|++++.|||++|++||++++..+. +..+|||+||
T Consensus 372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~-------------------d~~~G~G~vn 432 (671)
T 1r6v_A 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVK 432 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCC
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC-------------------CCCcccceeC
Confidence 579999999999999999999999999999999999999999998765433 5689999999
Q ss_pred ccccCCCCeeee
Q 005034 703 ATASLDPGLVFD 714 (718)
Q Consensus 703 ~~~Al~~~l~~~ 714 (718)
+.+||+..+..+
T Consensus 433 a~~Al~~~l~~~ 444 (671)
T 1r6v_A 433 LDAALQGPLPTQ 444 (671)
T ss_dssp HHHHHHCCCCSS
T ss_pred HHHHhhhhcCCC
Confidence 999998766543
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=506.62 Aligned_cols=340 Identities=21% Similarity=0.234 Sum_probs=40.6
Q ss_pred CceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccCCCCCccCCCc--------ccccccCCCCCCCCC
Q 005034 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQ--------GAWIQEGGYETAGEG 188 (718)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~--------~~w~~~~~~~~~G~g 188 (718)
..++.+.|..+|+||+++++++.+++|+++|+|++||++..+.... ..|++.. ..|. .+.+|+|
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~----~pWgL~~i~~~~~~~~~w~----~~~~G~G 179 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS----IPWNLERITPPRYRADEYQ----PPDGGSL 179 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC----CCcchhhcccccccccccc----cCCCCCC
Confidence 4578899999999999999999999999999999999999876521 1133321 1343 3689999
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
|+|||||||||++||+|.++... ..|+. +.+. +.......+.|.+
T Consensus 180 V~VaVIDTGId~~HpdL~gr~~~------~~~~~----------------------~~d~-------dg~~~~~~~~D~~ 224 (692)
T 2p4e_P 180 VEVYLLDTSIQSDHREIEGRVMV------TDFEN----------------------VPEE-------DGTRFHRQASKCD 224 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEcCCCCCCChhhcCceEe------ccccc----------------------ccCC-------CCCcccCCCCCCC
Confidence 99999999999999999986430 00100 0000 0000012456889
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC------CCCEEEEcCC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDIISLSIT 342 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~ViN~S~G 342 (718)
||||||||||+|+. .||||+|+|+.+|+++.++.++.++++++|+|++++ +++|||||||
T Consensus 225 GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlG 290 (692)
T 2p4e_P 225 SHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA 290 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCC
Confidence 99999999999863 599999999999999886668889999999999986 8999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 421 (718)
+.. ...++++++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.++....
T Consensus 291 g~~--------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~a~--------------- 347 (692)
T 2p4e_P 291 GGY--------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVT--------------- 347 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC--------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCccc---------------
Confidence 642 356788888899999999999999998654 35888999999999764321000
Q ss_pred CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (718)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~ 501 (718)
T Consensus 348 -------------------------------------------------------------------------------- 347 (692)
T 2p4e_P 348 -------------------------------------------------------------------------------- 347 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (718)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 581 (718)
.-+.||+||
T Consensus 348 -----------------------------------------------------------------------~ss~fSn~G 356 (692)
T 2p4e_P 348 -----------------------------------------------------------------------LGTLGTNFG 356 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------------cccccCCCC
Confidence 002379999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005034 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (718)
Q Consensus 582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L 661 (718)
|.+ ||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+++|||++|
T Consensus 357 ~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L 415 (692)
T 2p4e_P 357 RCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRL 415 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cce-------------eEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 755 9999999999998531 2478999999999999999999999999999999999999
Q ss_pred HhcccccccCCCccccccccCCCCCCC-CCCCCCcccccc--ccccccCC
Q 005034 662 STSATLYDKNGGPIMAQRAYAKPDENQ-SPATPFDMGSGF--VNATASLD 708 (718)
Q Consensus 662 ~~TA~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~G~--vn~~~Al~ 708 (718)
++||.+....+.+++.......|..-. .+.....+|+|+ .++..+..
T Consensus 416 ~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 416 IHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp --------------------------------------------------
T ss_pred HHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 999976433221111100000111000 111345678888 77777764
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=434.70 Aligned_cols=257 Identities=32% Similarity=0.445 Sum_probs=210.5
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +..|+||+|||||||||++||+|.++. +..++|.+.
T Consensus 23 aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~~------------------------------~~~~~~~~~------ 62 (280)
T 1dbi_A 23 AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGKV------------------------------IKGYDFVDN------ 62 (280)
T ss_dssp HTTT----CCCCTTCEEEEEESCCCTTSTTTTTTE------------------------------EEEEETTTT------
T ss_pred HHhh----cCCCCCCEEEEEeCCcCCCChhhccCc------------------------------ccceeccCC------
Confidence 6665 566779999999999999999998642 333444432
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
...+.|..+|||||||||+|..+++ .++.||||+|+|+.+|+++.++.+..++++++|+|++++|+
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~ 128 (280)
T 1dbi_A 63 ------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 1345688999999999999975432 34689999999999999988666889999999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
+|||||||.... ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 129 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 188 (280)
T 1dbi_A 129 EVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------- 188 (280)
T ss_dssp SEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------
T ss_pred CEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-------------
Confidence 999999997532 367888999999999999999999999888889999999999996432
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+.+
T Consensus 189 -----------------------------------------------------------------------------~~~ 191 (280)
T 1dbi_A 189 -----------------------------------------------------------------------------DRL 191 (280)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 236
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 654 (718)
+.||++||+. ||+|||.+|+++. .++.|..++|||||||||||++|||++ |.+++
T Consensus 192 ~~~S~~G~~~-------------dv~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~ 246 (280)
T 1dbi_A 192 ASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS--QGRNN 246 (280)
T ss_dssp CTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH--TTCCH
T ss_pred CCCCCCCCCc-------------eEEEecCCeEeec----------CCCCEEEccCHHHHHHHHHHHHHHHHC--CCCCH
Confidence 7899999876 8999999999998 566899999999999999999999987 89999
Q ss_pred HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
.|||++|++||+++... ...+|+|+||+.+||+
T Consensus 247 ~~v~~~L~~ta~~~~~~---------------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 247 IEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred HHHHHHHHHhCccCCCC---------------------CCcccCCEECHHHHhc
Confidence 99999999999987532 2469999999999986
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=434.58 Aligned_cols=261 Identities=31% Similarity=0.484 Sum_probs=220.8
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. .+|+||+|||||||||++||+|.++. +..++|.+.
T Consensus 18 i~~~~-aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~~ 61 (279)
T 1thm_A 18 IQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGKV------------------------------VGGWDFVDN 61 (279)
T ss_dssp TTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTTE------------------------------EEEEETTTT
T ss_pred CChHH-HHhc-----CCCCCCEEEEEccCCCCCCcchhcCc------------------------------cccccccCC
Confidence 33334 7876 47999999999999999999999642 333444432
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
...+.|..+|||||||||+|..+++ .++.||||+|+|+.+|+++..+.+...+++++|+|
T Consensus 62 ------------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~ 121 (279)
T 1thm_A 62 ------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITY 121 (279)
T ss_dssp ------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred ------------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHH
Confidence 1345678999999999999976433 34689999999999999988667888999999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeE
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~ 408 (718)
|++++++|||||||.... ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 122 a~~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 187 (279)
T 1thm_A 122 AADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------- 187 (279)
T ss_dssp HHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------
T ss_pred HHHCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------
Confidence 999999999999997542 367888999999999999999999999888899999999999996432
Q ss_pred EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (718)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 488 (718)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (718)
Q Consensus 489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (718)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHh
Q 005034 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (718)
Q Consensus 569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 648 (718)
+.++.||++||.. ||+|||.+|++++ +++.|..++|||||||||||++||| +
T Consensus 188 ---~~~~~fS~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll--~ 239 (279)
T 1thm_A 188 ---DNKSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLL--A 239 (279)
T ss_dssp ---SCBCTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHH--H
T ss_pred ---CCcCCcCCCCCce-------------EEEEcCCCeEEEe----------CCCCEEEcccHHHHHHHHHHHHHHH--H
Confidence 2357899999876 8999999999998 5668999999999999999999999 5
Q ss_pred CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 649 ~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
+|.++++|||++|++||++++..+ ..||+|+||+.+||+
T Consensus 240 ~p~~t~~~v~~~L~~ta~~~~~~~---------------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 240 SQGRSASNIRAAIENTADKISGTG---------------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTTCCHHHHHHHHHHTCBCCTTBT---------------------TTBSSEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHHhCccCCCCC---------------------ccccCCeeCHHHHhc
Confidence 899999999999999999876432 368999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=431.78 Aligned_cols=254 Identities=33% Similarity=0.492 Sum_probs=216.7
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|+|||||| .+||+|+. ...++|..+
T Consensus 16 a~~~----g~~G~gv~VaViDtGi-~~h~~l~~--------------------------------~~~~~~~~~------ 52 (269)
T 1gci_A 16 AHNR----GLTGSGVKVAVLDTGI-STHPDLNI--------------------------------RGGASFVPG------ 52 (269)
T ss_dssp HHHT----TCSCTTCEEEEEESCC-CCCTTCCE--------------------------------EEEEECSTT------
T ss_pred HHhc----CCCCCCCEEEEECCCC-CCCHhhcc--------------------------------cCCcccCCC------
Confidence 6765 7899999999999999 89999942 112223221
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
...+.|..+|||||||||+|..+. .++.||||+|+|+.+|+++..+.+..++++++|+|++++++
T Consensus 53 ------~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 117 (269)
T 1gci_A 53 ------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp ------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCC
Confidence 123467889999999999997421 34689999999999999988666888999999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
+|||||||.... ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 118 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 177 (269)
T 1gci_A 118 HVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------- 177 (269)
T ss_dssp SEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------
T ss_pred eEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-------------
Confidence 999999997542 367888999999999999999999999888899999999999996432
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+.+
T Consensus 178 -----------------------------------------------------------------------------~~~ 180 (269)
T 1gci_A 178 -----------------------------------------------------------------------------NNR 180 (269)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 236
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 654 (718)
+.||++||.+ ||+|||.+|++++ +++.|..++|||||||||||++|||+|++|+|++
T Consensus 181 ~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~ 237 (269)
T 1gci_A 181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237 (269)
T ss_dssp CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred CCCCCCCCCc-------------ceEecCCCeEeec----------CCCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 7899999876 9999999999998 5668999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
.|||++|++||+++.. +..||+|+||+.+||+
T Consensus 238 ~~v~~~L~~tA~~~g~----------------------~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 238 VQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHhCccCCC----------------------CCCcccCccCHHHHcC
Confidence 9999999999998741 4579999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=434.10 Aligned_cols=255 Identities=32% Similarity=0.511 Sum_probs=215.0
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|+. ...++|..+
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~--------------------------------~~g~~~~~~------ 53 (274)
T 1r0r_E 16 VQAQ----GFKGANVKVAVLDTGIQASHPDLNV--------------------------------VGGASFVAG------ 53 (274)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCE--------------------------------EEEEECSTT------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHhHcC--------------------------------CCCccccCC------
Confidence 6766 7899999999999999999999942 112222221
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
...+.|..+|||||||||+|..+. .++.||||+|+|+.+|+++..+.+..++++++|+|++++++
T Consensus 54 ------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~ 118 (274)
T 1r0r_E 54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 122457889999999999997421 34689999999999999987666788999999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC----CCCCCCCCCceEEEeeeccCCceeeeEEe
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS----PKSMSSFSPWIFTVGAASHDRIYTNSIIL 410 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~----~~~~~~~~~~vitVgA~~~~~~~~~~~~~ 410 (718)
+|||||||.... ...++++++.+.++|++||+||||+|.. ...+|+..+++|+||+++.+
T Consensus 119 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 182 (274)
T 1r0r_E 119 DVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------- 182 (274)
T ss_dssp SEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------
T ss_pred CEEEeCCCCCCC-------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC---------
Confidence 999999997542 3678889999999999999999999976 34578889999999996432
Q ss_pred CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (718)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 490 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (718)
Q Consensus 491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (718)
Q Consensus 571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 650 (718)
+.++.||++||.+ ||+|||.+|++++ +++.|..++|||||||||||++|||+|++|
T Consensus 183 -~~~~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 238 (274)
T 1r0r_E 183 -SNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAALILSKHP 238 (274)
T ss_dssp -SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred -CCcCccCCCCCCc-------------eEEeCCCCeEeec----------CCCCEEEeccHHHHHHHHHHHHHHHHHHCC
Confidence 2357899999865 9999999999998 566899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
++++.|||++|++||+++.. +..||+|+||+.+||+
T Consensus 239 ~lt~~~v~~~L~~tA~~~g~----------------------~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 239 NLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp TCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred CCCHHHHHHHHHHhCcccCC----------------------CCCcccCccCHHHHhC
Confidence 99999999999999998741 4579999999999986
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=429.67 Aligned_cols=257 Identities=30% Similarity=0.459 Sum_probs=215.7
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|+.. ..++|...
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~~--------------------------------~g~~~~~~------ 53 (281)
T 1to2_E 16 LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA--------------------------------GGASMVPS------ 53 (281)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE--------------------------------EEEECCTT------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHHHcCc--------------------------------CCccccCC------
Confidence 6766 78999999999999999999999521 11222211
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
+.....|..+|||||||||+|..+. .++.||||+|+|+.+|+++.++.+..++++++|+|++++++
T Consensus 54 -----~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 119 (281)
T 1to2_E 54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119 (281)
T ss_dssp -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred -----CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCC
Confidence 1112357889999999999997421 34689999999999999987666788999999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC----CCCCCCCCCceEEEeeeccCCceeeeEEe
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS----PKSMSSFSPWIFTVGAASHDRIYTNSIIL 410 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~----~~~~~~~~~~vitVgA~~~~~~~~~~~~~ 410 (718)
+|||||||.... ...+.++++.+.++|++||+||||+|.. ...+|+..+++|+|||++.+
T Consensus 120 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 183 (281)
T 1to2_E 120 DVINMSLGGPSG-------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------- 183 (281)
T ss_dssp SEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------
T ss_pred cEEEECCcCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------
Confidence 999999997542 3678889999999999999999999986 35578889999999996421
Q ss_pred CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (718)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 490 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (718)
Q Consensus 491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (718)
Q Consensus 571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 650 (718)
+.++.||++||.. ||+|||.+|++++ +++.|..++|||||||||||++|||+|++|
T Consensus 184 -~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 239 (281)
T 1to2_E 184 -NQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAALILSKHP 239 (281)
T ss_dssp -SCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred -CCcCCcCCCCCCc-------------eEEecCCCeEeec----------CCCCEEecCcHHHHHHHHHHHHHHHHHhCC
Confidence 2367899999876 9999999999998 566899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
+|+++|||++|++||+++.. +..||||+||+.+|++.
T Consensus 240 ~lt~~~v~~~L~~tA~~~g~----------------------~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 240 NWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp TCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred CCCHHHHHHHHHhhCcccCC----------------------CCCcccceecHHHHhhh
Confidence 99999999999999998741 45799999999999975
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=460.85 Aligned_cols=304 Identities=22% Similarity=0.230 Sum_probs=193.7
Q ss_pred CCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhh
Q 005034 170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249 (718)
Q Consensus 170 ~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (718)
++++ +|.. +..|++|+|||||||||++||+|++... .+....|....+.... .......+..+.
T Consensus 19 G~~~-~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 82 (357)
T 4h6x_A 19 GLAD-LHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEV---SKVFPYWHEPAEPITP--------EDYAAFQSIRDQ 82 (357)
T ss_dssp THHH-HHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEE---EECCCTTSCCCCCCCH--------HHHHHHHHHHHH
T ss_pred CHHH-HHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCc---ccccccccccccccCc--------ccccccccccCc
Confidence 4444 7887 5678999999999999999999998654 3333445443321100 000000000000
Q ss_pred ------hhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-----CC
Q 005034 250 ------ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-----GF 318 (718)
Q Consensus 250 ------~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~-----~~ 318 (718)
..........+..++.|.+||||||||||+|+.+ .++.||||+|+|+.+|++....+ ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~ 152 (357)
T 4h6x_A 83 GLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMS 152 (357)
T ss_dssp TCCSHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------
T ss_pred cccccccccccccccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCcccccc
Confidence 0000000111223344677999999999999754 24689999999999999754221 33
Q ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeee
Q 005034 319 AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398 (718)
Q Consensus 319 ~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~ 398 (718)
..+++++|+|++++|++|||||||..... ....+.+.++++.+.++|++||+||||+|.....+|+..+++|+|||+
T Consensus 153 ~~~~~~ai~~a~~~g~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~ 229 (357)
T 4h6x_A 153 PLNLARAIDLALELGANIIHCAFCRPTQT---SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAA 229 (357)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEC--------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEeeccccCCcc---ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEe
Confidence 45688999999999999999999976443 234578899999999999999999999999888999999999999997
Q ss_pred ccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccc
Q 005034 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478 (718)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~ 478 (718)
+.+
T Consensus 230 ~~~----------------------------------------------------------------------------- 232 (357)
T 4h6x_A 230 KVD----------------------------------------------------------------------------- 232 (357)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 532
Q ss_pred cCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEE
Q 005034 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC 558 (718)
Q Consensus 479 ~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (718)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHH
Q 005034 559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638 (718)
Q Consensus 559 ~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 638 (718)
+.++.|||||+. ..||||+|||.+|+|+.+ .++.|..++|||||||||
T Consensus 233 -------------~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~---------~~~~~~~~sGTS~AaP~v 280 (357)
T 4h6x_A 233 -------------GTPCHFSNWGGN----------NTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPVM 280 (357)
T ss_dssp -------------SSBCTTCC---C----------TTTTEEEEECSSEEECCT---------TCSCCEEECSHHHHHHHH
T ss_pred -------------CcccccccCCCC----------CCccceeecCCCeEeccC---------CCCcccccCcHHHHHHHH
Confidence 236889999975 468999999999999984 234667899999999999
Q ss_pred HHHHHHHHH----hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 639 AGLAALIKQ----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 639 AG~aALl~q----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||++|||++ ++|.|+++|||++|++||++++... ...+.+||+|+||+.+||+
T Consensus 281 aG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-----------------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 281 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-----------------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------------CTTCBCCHHHHHH
T ss_pred HHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----------------CCCcccceeEEecHHHHHH
Confidence 999999995 5668999999999999999875432 1235679999999999986
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=453.46 Aligned_cols=370 Identities=21% Similarity=0.299 Sum_probs=264.4
Q ss_pred CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (718)
Q Consensus 185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (718)
+|+||+|||||||||++||+|.++.. ..+++.. ..++..+
T Consensus 20 ~g~gv~VaViDtGvd~~Hp~l~~~~~------------------------------~~~~~~~----------~~~~~~~ 59 (441)
T 1y9z_A 20 QAGNRTICIIDSGYDRSHNDLNANNV------------------------------TGTNNSG----------TGNWYQP 59 (441)
T ss_dssp TGGGCEEEEEESCCCTTSTTTTTSEE------------------------------EECCCTT----------SCCTTCC
T ss_pred CCCCcEEEEEcCCCCCCChhHhcCcc------------------------------cCcccCC----------CCCCCCC
Confidence 47799999999999999999987533 0111110 0112345
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCc--eEEEEeecccCCCCCHHHHHHHHHHHHHC-CCCEEEEcC
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS--HIAVYKALYKSFGGFAADVVAAIDQAAQD-GVDIISLSI 341 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A--~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-g~~ViN~S~ 341 (718)
.|..||||||||||+|..+. .++.||||+| +|+.+|+++..+.++.+++++||+||+++ |++||||||
T Consensus 60 ~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~ 130 (441)
T 1y9z_A 60 GNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL 130 (441)
T ss_dssp CSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCC
Confidence 67899999999999997532 3468999995 99999999875557778999999999999 999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEe--ee
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTIS--GV 419 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~--~~ 419 (718)
|.... ...+.++++.+.++|++||+||||+|.....+|+..+++|+|||++.++....+.+++....+. |.
T Consensus 131 G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~ 203 (441)
T 1y9z_A 131 GGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE 203 (441)
T ss_dssp CBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECS
T ss_pred CCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccC
Confidence 97542 2567888999999999999999999998888999999999999999988777776666544332 21
Q ss_pred ccCCCC---Cc----------------eEE---E-----EEcccccCCCCcccCCccccccCCC-CCCccCCcCceEEEE
Q 005034 420 GLAPGT---DK----------------MYT---L-----ISALHALNNNTTTTDDMYVGECQDS-SNFNQDLVQGNLLIC 471 (718)
Q Consensus 420 ~~~~~~---~~----------------~~~---~-----~~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~~~~g~i~~~ 471 (718)
.+.... +. ..| . .+........ .......|... ..++..+++|||++|
T Consensus 204 ~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~----~~~~~~~C~~~~~~~~~~~~~gkivl~ 279 (441)
T 1y9z_A 204 AILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS----ATGALAECTVNGTSFSCGNMANKICLV 279 (441)
T ss_dssp SEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCE----EEEEEEEEEEETTEEECCCCTTEEEEE
T ss_pred CeeccccCCCcccceeecccccccccccCcccccccCCccccccccccc----cccchhccccccccccCCCccccEEEE
Confidence 111000 00 000 0 0000000000 00113447543 346778899999999
Q ss_pred EeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcc-----cCCCCCCCCeEEecCcchHHHHHHHHhccCCCccc
Q 005034 472 SYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ-----LNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV 546 (718)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 546 (718)
.|+.+. .....+..+..+++++|+.++|+|++....+.. .......+|.+++ +..++..|+.++..
T Consensus 280 ~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v-~~~~g~~l~~~~~~------- 350 (441)
T 1y9z_A 280 ERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV-DRATGLALKAKLGQ------- 350 (441)
T ss_dssp ECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE-CHHHHHHHHTTTTS-------
T ss_pred eccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE-eHHHHHHHHHHhcC-------
Confidence 985321 123466788999999999999999987543321 1233456787766 44566666543321
Q ss_pred cceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcccc
Q 005034 547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA 626 (718)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~ 626 (718)
.+. +++. .++.|.
T Consensus 351 ---------------------------------------------------~~t------~~~~----------~~~~y~ 363 (441)
T 1y9z_A 351 ---------------------------------------------------STT------VSNQ----------GNQDYE 363 (441)
T ss_dssp ---------------------------------------------------EEE------EEEE----------EEESEE
T ss_pred ---------------------------------------------------Ccc------cccc----------cCCCce
Confidence 111 0111 345899
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS 706 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 706 (718)
.++|||||||||||++|||+|++|+|+|++||++||+||++++..+. +.+||+|+||+.+|
T Consensus 364 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~-------------------~~~~G~G~vn~~~A 424 (441)
T 1y9z_A 364 YYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR-------------------DNQTGYGMINAVAA 424 (441)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC-------------------BTTTBTCBCCHHHH
T ss_pred eecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC-------------------cccccccccCHHHH
Confidence 99999999999999999999999999999999999999998865543 56799999999999
Q ss_pred CCC
Q 005034 707 LDP 709 (718)
Q Consensus 707 l~~ 709 (718)
++.
T Consensus 425 ~~~ 427 (441)
T 1y9z_A 425 KAY 427 (441)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=435.14 Aligned_cols=266 Identities=23% Similarity=0.296 Sum_probs=213.0
Q ss_pred CCCC-CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 005034 183 ETAG-EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (718)
Q Consensus 183 ~~~G-~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 261 (718)
.++| +||+|||||||||++||+|.++.. ..+++.. ....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~------------------------------~~~~~~~----------~~~~ 42 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGADL------------------------------TVLPTLA----------PTAA 42 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCEE------------------------------EECCCSS----------CCCC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCee------------------------------ecCcCCC----------CCCC
Confidence 3688 699999999999999999997543 0001100 0011
Q ss_pred CCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHHHHHHCCCCEEEEc
Q 005034 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLS 340 (718)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~ViN~S 340 (718)
....|.+||||||||||+|+.++ ++.||||+|+|+.+|++.++. .....+++++|+|+++++++|||||
T Consensus 43 ~~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S 112 (282)
T 3zxy_A 43 RSDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS 112 (282)
T ss_dssp CTTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEecc
Confidence 12234568999999999997542 467999999999999986543 3677889999999999999999999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
||..... ......++++++.+.++|+++|+||||+|.....+|+..+++|+|||++.+
T Consensus 113 ~G~~~~~---~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 170 (282)
T 3zxy_A 113 GGELTDF---GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------- 170 (282)
T ss_dssp CCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------
T ss_pred Ccccccc---ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------
Confidence 9975432 224567889999999999999999999999888889999999999996532
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
+.++.||++
T Consensus 171 -----------------------------------------------------------------------~~~~~~S~~ 179 (282)
T 3zxy_A 171 -----------------------------------------------------------------------GHPLDFSNW 179 (282)
T ss_dssp -----------------------------------------------------------------------SCBCSSSCC
T ss_pred -----------------------------------------------------------------------CccccccCC
Confidence 235778998
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhC----CCCCHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF----PSFSPSA 656 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~ls~~~ 656 (718)
|+. +.||||+|||.+|+++. +++.|..++|||||||||||++|||++++ |.++|+|
T Consensus 180 ~~~----------~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~ 239 (282)
T 3zxy_A 180 GST----------YEQQGILAPGEDILGAK----------PGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQK 239 (282)
T ss_dssp CHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCC----------ccccceeccCcceeeec----------CCCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHH
Confidence 875 46889999999999998 56789999999999999999999999875 7899999
Q ss_pred HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 657 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||++|++||++++... +..+..+|+|+||+.+||+
T Consensus 240 vk~~L~~tA~~~~~~~-----------------~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 240 VRQLLLQSALPCDDDA-----------------PEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHCBCC------------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHhhCeeCCCCC-----------------CCccCceeeeEeCHHHHHH
Confidence 9999999998764321 2335679999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=438.72 Aligned_cols=263 Identities=29% Similarity=0.399 Sum_probs=213.9
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++. ...++|..+..
T Consensus 33 aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~~------------------------------~~~~~~~~~~~---- 74 (327)
T 2x8j_A 33 VWRA----SAKGAGQIIGVIDTGCQVDHPDLAERI------------------------------IGGVNLTTDYG---- 74 (327)
T ss_dssp HHHH----HGGGTTCEEEEEESCCCTTCTTTGGGE------------------------------EEEEECSSGGG----
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCChhHhhcc------------------------------cCCccccCCCC----
Confidence 7776 689999999999999999999998642 33344443210
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--- 331 (718)
.+.....|..||||||||||+|..+. .++.||||+|+|+.+|+++.++.+..++++++|+||++
T Consensus 75 ----~~~~~~~d~~gHGT~VAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 141 (327)
T 2x8j_A 75 ----GDETNFSDNNGHGTHVAGTVAAAETG---------SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRG 141 (327)
T ss_dssp ----GCTTCCCCSSSHHHHHHHHHHCCCCS---------SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCC
T ss_pred ----CCCCCCCCCCCchHHHHHHHhccCCC---------CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcc
Confidence 01123467899999999999997421 34689999999999999987566788999999999999
Q ss_pred ---CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC-----CCCCCCCCCceEEEeeeccCCc
Q 005034 332 ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-----PKSMSSFSPWIFTVGAASHDRI 403 (718)
Q Consensus 332 ---~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~-----~~~~~~~~~~vitVgA~~~~~~ 403 (718)
.+++|||||||.... ...+.++++.+.++|++||+||||+|.. ...+|+..+++|+|||++.+
T Consensus 142 ~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~-- 212 (327)
T 2x8j_A 142 PKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD-- 212 (327)
T ss_dssp TTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT--
T ss_pred cccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC--
Confidence 899999999997542 3678889999999999999999999975 34678889999999997432
Q ss_pred eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (718)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 483 (718)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (718)
Q Consensus 484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (718)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHH
Q 005034 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA 643 (718)
Q Consensus 564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 643 (718)
+.++.||++||.+ ||+|||.+|++++ +++.|..++|||||||||||++|
T Consensus 213 --------~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aA 261 (327)
T 2x8j_A 213 --------LRLSDFTNTNEEI-------------DIVAPGVGIKSTY----------LDSGYAELSGTAMAAPHVAGALA 261 (327)
T ss_dssp --------CCBSCC---CCCC-------------SEEEECSSEEEEC----------STTCEEEEESGGGTHHHHHHHHH
T ss_pred --------CCCCCccCCCCCc-------------eEecCcCceEeec----------CCCCEEeecCHHHHHHHHHHHHH
Confidence 2367899999865 9999999999998 56689999999999999999999
Q ss_pred HHHHh-----CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 644 LIKQK-----FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 644 Ll~q~-----~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
||+|+ +|.+++.|||++|++||++++. ++..+|+|+||+.+|++.
T Consensus 262 ll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 262 LIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------------CHHHHTTCEECTTHHHHH
T ss_pred HHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------------CCCceeeeEECHHHHHHh
Confidence 99999 9999999999999999997642 245799999999999863
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=435.33 Aligned_cols=268 Identities=27% Similarity=0.428 Sum_probs=219.9
Q ss_pred cCCCcccccccCCCCCCCC--CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecc
Q 005034 169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA 246 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (718)
++++. +|.. + +|+ ||+|||||||||++||+|.++.. ..++|.
T Consensus 15 i~~~~-aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~~~------------------------------~~~~~~ 58 (320)
T 2z30_A 15 VKAPS-VWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAANIA------------------------------WCVSTL 58 (320)
T ss_dssp TTCGG-GTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGGEE------------------------------EEEECG
T ss_pred cChHH-HHHh----c-CCCcCCeEEEEECCCCCCCChhHhcccc------------------------------cCcccc
Confidence 44444 7775 3 899 99999999999999999997432 223333
Q ss_pred hhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH
Q 005034 247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326 (718)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai 326 (718)
.+.. ........|..+|||||||||+|..+. .++.||||+|+|+.+|+++..+.+..++++++|
T Consensus 59 ~~~~-------~~~~~~~~d~~gHGT~vAgiia~~~n~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai 122 (320)
T 2z30_A 59 RGKV-------STKLRDCADQNGHGTHVIGTIAALNND---------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGI 122 (320)
T ss_dssp GGCC-------BCCHHHHBCSSSHHHHHHHHHHCCSSS---------BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred CCcc-------CCCCCCCCCCCCCHHHHHHHHHcccCC---------CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHH
Confidence 2200 000012357889999999999997421 346899999999999999876667889999999
Q ss_pred HHHHHC--------------------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCC
Q 005034 327 DQAAQD--------------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS 386 (718)
Q Consensus 327 ~~a~~~--------------------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~ 386 (718)
+|+++. +++|||||||.... ...+.++++.+.++|++||+||||+|.....+|
T Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~P 195 (320)
T 2z30_A 123 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 195 (320)
T ss_dssp HHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred HHHHhCcccccccccccccccccccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCc
Confidence 999987 99999999997542 367888889999999999999999999888899
Q ss_pred CCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCc
Q 005034 387 SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466 (718)
Q Consensus 387 ~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 466 (718)
+..+++|+|||++.+
T Consensus 196 a~~~~vi~Vga~~~~----------------------------------------------------------------- 210 (320)
T 2z30_A 196 AAYPEVIAVGAIDSN----------------------------------------------------------------- 210 (320)
T ss_dssp TTSTTEEEEEEECTT-----------------------------------------------------------------
T ss_pred ccCCCeEEEEeeCCC-----------------------------------------------------------------
Confidence 999999999997432
Q ss_pred eEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccc
Q 005034 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV 546 (718)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 546 (718)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcccc
Q 005034 547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA 626 (718)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~ 626 (718)
+.++.||++|| +|+|||.+|++++ +++.|.
T Consensus 211 -------------------------~~~~~~S~~g~---------------~v~APG~~i~s~~----------~~~~~~ 240 (320)
T 2z30_A 211 -------------------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYE 240 (320)
T ss_dssp -------------------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEE
T ss_pred -------------------------CCcCcccCCCC---------------CEEeCCCCeEEec----------cCCCeE
Confidence 23678999987 6899999999998 566899
Q ss_pred ccCchhhhhHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCC
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKF-------------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP 693 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~-------------p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (718)
.++|||||||||||++|||+|++ |.+++.+||++|++||+++...+. +
T Consensus 241 ~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g~-------------------~ 301 (320)
T 2z30_A 241 TLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW-------------------D 301 (320)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSSS-------------------B
T ss_pred eccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCCC-------------------C
Confidence 99999999999999999999999 999999999999999998754332 5
Q ss_pred CccccccccccccCCC
Q 005034 694 FDMGSGFVNATASLDP 709 (718)
Q Consensus 694 ~~~G~G~vn~~~Al~~ 709 (718)
..+|||+||+.+||+.
T Consensus 302 ~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 302 ADYGYGVVRAALAVQA 317 (320)
T ss_dssp TTTBTCBCCHHHHHHH
T ss_pred CCcCCceeCHHHHHHH
Confidence 6799999999999864
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=426.96 Aligned_cols=286 Identities=30% Similarity=0.462 Sum_probs=222.1
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++.. ..++|....
T Consensus 18 ~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~~~------------------------------~~~~~~~~~----- 58 (310)
T 2ixt_A 18 TLTS----TTGGSGINIAVLDTGVNTSHPDLVNNVE------------------------------QCKDFTGAT----- 58 (310)
T ss_dssp TCCC----CCCCTTCEEEEEESCCCTTCTTTTTTEE------------------------------EEEESSSSS-----
T ss_pred hhhc----cCCCCCcEEEEEecCCCCCCHHHhhccc------------------------------ccccccCCC-----
Confidence 5654 7899999999999999999999987432 223333210
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
........|..+|||||||||+|.... +..++.||||+|+|+.+|++...+.+..++++++|+|++++++
T Consensus 59 ---~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 128 (310)
T 2ixt_A 59 ---TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQAT 128 (310)
T ss_dssp ---SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhh
Confidence 001123457889999999999987421 1135689999999999999987666889999999999999887
Q ss_pred -----CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC--CCCCCCCCCceEEEeeeccCCceeee
Q 005034 335 -----DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS--PKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 335 -----~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~--~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
+|||||||.... ...+..+++.+.++|++||+||||+|.. ...+|+..+++|+|||++....
T Consensus 129 ~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~---- 197 (310)
T 2ixt_A 129 ATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ---- 197 (310)
T ss_dssp HHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE----
T ss_pred ccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc----
Confidence 999999997542 3678889999999999999999999976 4567888999999999752100
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 647 (718)
.....++.||++||..... .-..++.||||+|||.+|++++ +++.|..++|||||||||||++|||+|
T Consensus 198 -~g~~~~~~~S~~G~~~~~g-~~~~~~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~ 265 (310)
T 2ixt_A 198 -NGTYRVADYSSRGYISTAG-DYVIQEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIWA 265 (310)
T ss_dssp -TTEEEECTTSCCCCTTTTT-SSSCCTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHH
T ss_pred -CCCeeeccccCCCCccCCc-cccccCCCeeEECCCCCEeeec----------CCCCEEeeccHHHHHHHHHHHHHHHHH
Confidence 0000367899999954210 0001345999999999999998 566899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034 648 KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (718)
Q Consensus 648 ~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 704 (718)
++|+|++.|||++|++||++++..+. ....+.++..+|||++|+.
T Consensus 266 ~~p~lt~~~v~~~L~~tA~~~~~~~~------------~~a~~g~d~~~G~G~~~vq 310 (310)
T 2ixt_A 266 ENPSLSNTQLRSNLQERAKSVDIKGG------------YGAAIGDDYASGFGFARVQ 310 (310)
T ss_dssp HSTTCCHHHHHHHHHHHHHTSCCCBS------------TTCCSSSBTTTBTCBCCC-
T ss_pred hCCCCCHHHHHHHHHhhCcccCCCCC------------cccccCCccccccceeecC
Confidence 99999999999999999998764321 1124556889999999963
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=435.10 Aligned_cols=275 Identities=23% Similarity=0.324 Sum_probs=220.3
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
.++++ +|+. ...++||+|||||||||++||+|.++.. ....+|..+
T Consensus 8 ~G~~~-aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~~~-----------------------------~~~~~~~~~ 53 (306)
T 4h6w_A 8 PGLKK-LWSE----TRGDPKICVAVLDGIVDQNHPCFIGADL-----------------------------TRLPSLVSG 53 (306)
T ss_dssp TTHHH-HHHH----CSCCTTCEEEEESSCCCTTSGGGTTCEE-----------------------------EECC-----
T ss_pred cCHHH-HHhh----hCCCCCCEEEEEcCCCCCCChhHcCCcc-----------------------------cCCCcccCC
Confidence 35555 8988 3345899999999999999999997643 111111111
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAID 327 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~ 327 (718)
+.....|.++|||||||||+|+.+ +++.||||+|+|+.+|++.+.. .....+++++|+
T Consensus 54 -----------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~ 112 (306)
T 4h6w_A 54 -----------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIE 112 (306)
T ss_dssp ----------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHH
T ss_pred -----------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHH
Confidence 112234678999999999999754 2468999999999999986533 477888999999
Q ss_pred HHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 328 ~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
|+++++++|||+|||..... ......++++++.+.++|++||+||||+|.....+|+..+++|+|||++..
T Consensus 113 ~a~~~g~~vi~~s~g~~~~~---~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------ 183 (306)
T 4h6w_A 113 QAVNNGANIINVSAGQLTDA---GEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------ 183 (306)
T ss_dssp HHHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT------
T ss_pred HhhcccceeeeccccccccC---CCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC------
Confidence 99999999999999964332 224567889999999999999999999999888899999999999997532
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 647 (718)
+.+++||++|+. ..||||+|||.+|+|+. +++.|..++|||||||||||++|||++
T Consensus 184 ----~~~~~~s~~g~~----------~~~~di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~~All~s 239 (306)
T 4h6w_A 184 ----GKPVDFSNWGDA----------YQKQGILAPGKDILGAK----------PNGGTIRLSGTSFATPIVSGVAALLLS 239 (306)
T ss_dssp ----SCBCSSSCBCHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ----CCccccccccCC----------cCcceeecCCcCccccc----------CCCceeccCCCcchhHHHHHHHHHHHH
Confidence 135678888875 46889999999999998 567899999999999999999999986
Q ss_pred ----hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 648 ----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 648 ----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
++|.++|+|||++|++||++++..+. .....||+|+||+.+||+
T Consensus 240 ~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~-----------------~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 240 LQIKRGEKPDPQKVKNALLASATPCNPKDT-----------------DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTCBCCCTTTC-----------------SCGGGGTTCBCCHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHhhCccCCCCCC-----------------CCCCCcceeecCHHHHHH
Confidence 46999999999999999998865432 224579999999999986
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=440.75 Aligned_cols=295 Identities=26% Similarity=0.363 Sum_probs=224.4
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEEccccCC------CCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeee
Q 005034 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDP------THPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241 (718)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~------~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (718)
.++++. +|... +++|+||+|||||||||. +||+|.++. ..
T Consensus 7 ~i~~~~-~~~~~---g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i------------------------------~~ 52 (434)
T 1wmd_A 7 IVKADV-AQSSY---GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKI------------------------------TA 52 (434)
T ss_dssp HTTHHH-HHHHH---CCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCE------------------------------EE
T ss_pred hhCchh-hhhcc---CCCCcccEEEEEecCcCCCCCCcccCcccCCCE------------------------------ee
Confidence 345544 77632 689999999999999999 799998643 23
Q ss_pred eeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CH
Q 005034 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FA 319 (718)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~ 319 (718)
.++|.+. ..+.|..||||||||||+|+. ..+.||||+|+|+.+|+++..+.. ..
T Consensus 53 ~~~~~~~-------------~~~~d~~gHGT~VAgiiag~g-----------~~~~GvAp~a~l~~~~v~~~~g~~~~~~ 108 (434)
T 1wmd_A 53 LYALGRT-------------NNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGLGGLP 108 (434)
T ss_dssp EEETTTT-------------TCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTTSSCTTSC
T ss_pred eccccCC-------------CCCCCCCCcHHHHHHHHHcCC-----------CCceeeCCCCEEEEEEeecCCCcccccc
Confidence 3344321 345678899999999999863 235799999999999999764332 45
Q ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHH-HHCCCEEEEecCCCCCCC--CCCCCCCCceEEEe
Q 005034 320 ADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVG 396 (718)
Q Consensus 320 ~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a-~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVg 396 (718)
.++.++|+|++++|++|||||||..... ......++++.+ .++|++||+||||+|... ..+|+.++++|+||
T Consensus 109 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~-----~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVg 183 (434)
T 1wmd_A 109 SNLQTLFSQAYSAGARIHTNSWGAAVNG-----AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVG 183 (434)
T ss_dssp SSHHHHHHHHHHTTCSEEEECCCBCCTT-----CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCcCC-----cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEe
Confidence 6799999999999999999999986421 113344555544 689999999999999864 45688899999999
Q ss_pred eeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc
Q 005034 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (718)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~ 476 (718)
|++..+....
T Consensus 184 a~~~~~~~~~---------------------------------------------------------------------- 193 (434)
T 1wmd_A 184 ATENLRPSFG---------------------------------------------------------------------- 193 (434)
T ss_dssp EECCSCGGGC----------------------------------------------------------------------
T ss_pred cccccCcccC----------------------------------------------------------------------
Confidence 9864321000
Q ss_pred cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (718)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (718)
T Consensus 194 -------------------------------------------------------------------------------- 193 (434)
T 1wmd_A 194 -------------------------------------------------------------------------------- 193 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCc--cccCccccccCchhhh
Q 005034 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSV--EFQGESFAMMSGTSMA 634 (718)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmA 634 (718)
.+....+.+++|||+||+.+ |++||||+|||++|+++.+....... ...++.|..++|||||
T Consensus 194 ---------~~~~~~~~~a~fS~~G~~~~-------g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~A 257 (434)
T 1wmd_A 194 ---------SYADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMA 257 (434)
T ss_dssp ---------GGGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHH
T ss_pred ---------cccCCCCccccccCCCCCCC-------CCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHH
Confidence 00112346899999999986 79999999999999999854221000 0025689999999999
Q ss_pred hHHHHHHHHHHHHhCCCC-----CHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 635 APHIAGLAALIKQKFPSF-----SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 635 aP~VAG~aALl~q~~p~l-----s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
||||||++|||+|++|++ ++++||++|++||+++... .+++.+|||++|+.+|++.
T Consensus 258 aP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~-------------------~~~~~~G~G~vd~~~a~~~ 318 (434)
T 1wmd_A 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLNV 318 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCC-------------------CCCccCCcCeEeHHHhccc
Confidence 999999999999999865 8999999999999875321 3367899999999999975
Q ss_pred C
Q 005034 710 G 710 (718)
Q Consensus 710 ~ 710 (718)
.
T Consensus 319 ~ 319 (434)
T 1wmd_A 319 A 319 (434)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=429.40 Aligned_cols=273 Identities=18% Similarity=0.159 Sum_probs=217.4
Q ss_pred cCCCcccccccCCCCCCCC--CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecc
Q 005034 169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA 246 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (718)
++++. +|.. ++|+ ||+||||||||| +||+|.++.. ..++|.
T Consensus 30 i~~~~-aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~~~------------------------------~~~~~~ 72 (347)
T 2iy9_A 30 IGLTE-TTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDSEF------------------------------AKFSFT 72 (347)
T ss_dssp HTCCH-HHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTCEE------------------------------EEEECB
T ss_pred CChHH-HHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcCcc------------------------------cCCccc
Confidence 44444 7876 6899 999999999999 9999986432 233343
Q ss_pred hhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH
Q 005034 247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326 (718)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai 326 (718)
... .......+.|..+|||||||||+|.. ++.||||+|+|+.+|+++..... ++++||
T Consensus 73 ~~~-------~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~---~~~~ai 130 (347)
T 2iy9_A 73 QDG-------SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD---SWIRAI 130 (347)
T ss_dssp TTC-------CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT---HHHHHH
T ss_pred CCC-------CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH---HHHHHH
Confidence 220 00011234567899999999999871 35799999999999999763333 999999
Q ss_pred HHHHHC------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC-------CCCCCCCCC---
Q 005034 327 DQAAQD------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-------PKSMSSFSP--- 390 (718)
Q Consensus 327 ~~a~~~------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~-------~~~~~~~~~--- 390 (718)
+|++++ +++|||||||..... .....++++++.+.++|++||+||||+|.. ...+|+..+
T Consensus 131 ~~a~~~~~~~~~~~~Vin~S~G~~~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~ 206 (347)
T 2iy9_A 131 ESIMSNVFLAPGEEKIINISGGQKGVA----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVS 206 (347)
T ss_dssp HHHHTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCS
T ss_pred HHHHhhhhcccCCceEEEeccccCCCC----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCcccc
Confidence 999999 999999999975421 245788999999999999999999999985 456788888
Q ss_pred -------ceEEEeeecc--CCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCcc
Q 005034 391 -------WIFTVGAASH--DRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQ 461 (718)
Q Consensus 391 -------~vitVgA~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 461 (718)
++|+|||++. ++...
T Consensus 207 ~~~~~~~~vi~Vga~~~~~~g~~~-------------------------------------------------------- 230 (347)
T 2iy9_A 207 SVNKKQDPVIRVAALAQYRKGETP-------------------------------------------------------- 230 (347)
T ss_dssp HHHHHTCCEEEEEEECCCCTTSCC--------------------------------------------------------
T ss_pred ccccccCCEEEEEEcccCCCCcee--------------------------------------------------------
Confidence 9999999764 21100
Q ss_pred CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccC
Q 005034 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSL 541 (718)
Q Consensus 462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 541 (718)
T Consensus 231 -------------------------------------------------------------------------------- 230 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------- 230 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCcccc
Q 005034 542 ERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621 (718)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~ 621 (718)
...+.++.||++||+ ||||+|||++|++++ +
T Consensus 231 ---------------------------~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~----------~ 261 (347)
T 2iy9_A 231 ---------------------------VLHGGGITGSRFGNN------------WVDIAAPGQNITFLR----------P 261 (347)
T ss_dssp ---------------------------CBCCCSSSCBCBCTT------------TCSEEEECSSEEEEC----------T
T ss_pred ---------------------------cccCCCCCCCCCCCC------------CCEEEeCCCCeEeec----------C
Confidence 001235789999983 449999999999998 5
Q ss_pred CccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 005034 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFV 701 (718)
Q Consensus 622 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 701 (718)
++.|..++|||||||||||++|||+|++|++++.|||++|++||+++...+ +..+|+|+|
T Consensus 262 ~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------------~~~~G~G~l 321 (347)
T 2iy9_A 262 DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------------DKVTEGRVL 321 (347)
T ss_dssp TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------------TTSGGGEEC
T ss_pred CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCCEe
Confidence 668999999999999999999999999999999999999999999876432 257999999
Q ss_pred cccccCCC
Q 005034 702 NATASLDP 709 (718)
Q Consensus 702 n~~~Al~~ 709 (718)
|+.+||+.
T Consensus 322 d~~~A~~~ 329 (347)
T 2iy9_A 322 NAEKAISM 329 (347)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999864
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=424.92 Aligned_cols=300 Identities=23% Similarity=0.346 Sum_probs=219.9
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+||||||||+ +||+|.++... ...+........+. ........ ...++.+....
T Consensus 24 aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~-----~~~~~~~~~~~~d~-~~~~~~~~-~~~~~~~~~~~--- 88 (340)
T 3lpc_A 24 VWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLP-----GYDFISNSQISLDG-DGRDADPF-DEGDWFDNWAC--- 88 (340)
T ss_dssp HHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCC-----CEECCCCHHHHCSS-SSSBSCCB-CCCCCBCTTTT---
T ss_pred HHHh----cCCCCCeEEEEEcCCCC-CChhhhccccc-----CccccCCccccccC-CCccCCcc-ccccccccccc---
Confidence 7876 78999999999999998 99999976541 00110000000000 00000000 00000000000
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--- 331 (718)
.....+.....|..||||||||||+|..+++ .++.||||+|+|+.+|++... ++..++++++|+|+++
T Consensus 89 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~-~~~~~~~~~ai~~a~~~~~ 159 (340)
T 3lpc_A 89 GGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRI 159 (340)
T ss_dssp SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTT-BCCHHHHHHHHHHHHTCCC
T ss_pred cCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCC-CCcHHHHHHHHHHHhcccc
Confidence 0011112234688899999999999986443 346899999999999999874 4788999999999998
Q ss_pred -------CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCc
Q 005034 332 -------DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRI 403 (718)
Q Consensus 332 -------~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~ 403 (718)
.+++|||||||.... ....++.+++.+.++|++||+||||+|.... .+|+..+++|+|||++.+
T Consensus 160 ~~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-- 231 (340)
T 3lpc_A 160 AGIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR-- 231 (340)
T ss_dssp TTSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT--
T ss_pred cccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC--
Confidence 899999999997532 2456888899999999999999999998654 468889999999996432
Q ss_pred eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (718)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 483 (718)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (718)
Q Consensus 484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (718)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHH
Q 005034 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA 643 (718)
Q Consensus 564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 643 (718)
+.++.||++||.+ ||+|||.+|+++++..... ...+.|..++|||||||||||++|
T Consensus 232 --------~~~~~~S~~g~~~-------------di~ApG~~i~s~~~~~~~~---~~~~~~~~~sGTS~AaP~vaG~aA 287 (340)
T 3lpc_A 232 --------GIRASFSNYGVDV-------------DLAAPGQDILSTVDSGTRR---PVSDAYSFMAGTSMATPHVSGVAA 287 (340)
T ss_dssp --------SSBCTTCCBSTTC-------------CEEEECSSEEEEEESCSSS---CCSEEEEEECSHHHHHHHHHHHHH
T ss_pred --------CCcCCCCCCCCCc-------------eEEecCCCeecccCCCCcC---CCCCcceecccHhHHHHHHHHHHH
Confidence 2367899999755 9999999999998654321 123469999999999999999999
Q ss_pred HHHHh-C---CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCC
Q 005034 644 LIKQK-F---PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPG 710 (718)
Q Consensus 644 Ll~q~-~---p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 710 (718)
||+|+ + |.+++++||++|++||+++.. .++..+|+|+||+.+||+..
T Consensus 288 ll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------------~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 288 LVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------------RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------------CCSSCCCSSBCCHHHHHHHH
T ss_pred HHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------------CCCCCcccceecHHHHHHHH
Confidence 99998 5 999999999999999998642 12568999999999998754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=399.93 Aligned_cols=235 Identities=29% Similarity=0.447 Sum_probs=201.2
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++. ...++|...
T Consensus 21 aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~~------ 60 (284)
T 1sh7_A 21 NYNA----NFDGFGVTAYVIDTGVNNNHEEFGGRS------------------------------VSGYDFVDN------ 60 (284)
T ss_dssp BCCC----SCCCTTCEEEEEESCCCTTCTTTTTCE------------------------------EEEEETTTT------
T ss_pred hhhc----CCCCCCCEEEEEcCCCCCCChhHcCCc------------------------------cccccccCC------
Confidence 6665 689999999999999999999998642 233444332
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC--
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-- 332 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-- 332 (718)
...+.|..+|||||||||+|.. .||||+|+|+.+|+++..+.+..++++++|+|++++
T Consensus 61 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~ 120 (284)
T 1sh7_A 61 ------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNAS 120 (284)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCC
Confidence 1345678999999999999863 599999999999999886668899999999999984
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+++|||||||... ...++++++.+.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 121 ~~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 182 (284)
T 1sh7_A 121 GPSVANMSLGGGQ--------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS---------- 182 (284)
T ss_dssp SSEEEEECCCBSC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT----------
T ss_pred CCcEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC----------
Confidence 7999999999752 36788999999999999999999999864 3568889999999996432
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 651 (718)
+.++.||++||+. ||+|||++|++++ .++.|..++|||||||||||++|||+|++|+
T Consensus 183 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 239 (284)
T 1sh7_A 183 DSRSSFSNWGSCV-------------DLFAPGSQIKSAW----------YDGGYKTISGTSMATPHVAGVAALYLQENNG 239 (284)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCcccCCCCcc-------------EEEeccCCeEEec----------CCCCEEEccChHHHHHHHHHHHHHHHHHCCC
Confidence 2367899999976 8999999999998 5568999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccccc
Q 005034 652 FSPSAIASALSTSATLYDK 670 (718)
Q Consensus 652 ls~~~ik~~L~~TA~~~~~ 670 (718)
++++|||++|++||++...
T Consensus 240 lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 240 LTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp CCHHHHHHHHHHHSEESCC
T ss_pred CCHHHHHHHHHhhCccCCc
Confidence 9999999999999987644
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-47 Score=393.48 Aligned_cols=236 Identities=29% Similarity=0.400 Sum_probs=201.1
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++.. ..++|..
T Consensus 23 a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~~~------------------------------~~~~~~~------- 61 (276)
T 4dzt_A 23 SYTY----TATGRGVNVYVIDTGIRTTHREFGGRAR------------------------------VGYDALG------- 61 (276)
T ss_dssp CEEC----SCCCTTCEEEEEESCCCTTCGGGTTCEE------------------------------EEEETTS-------
T ss_pred ceec----CCCCCCcEEEEEccCCCCCChhHccCee------------------------------ccccCCC-------
Confidence 6776 6899999999999999999999986432 2233321
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC--
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-- 332 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-- 332 (718)
..+.|..||||||||||+|.. .||||+|+|+.+|+++....+...+++++|+|++++
T Consensus 62 -------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~ 120 (276)
T 4dzt_A 62 -------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHR 120 (276)
T ss_dssp -------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred -------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence 234578899999999999863 599999999999999986778999999999999987
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC-CCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+++|||||||... ...++++++.+.++|++||+||||+|..... +|+..+++|+|||++.+
T Consensus 121 ~~~vin~S~g~~~--------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 182 (276)
T 4dzt_A 121 RPAVANMSLGGGV--------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS---------- 182 (276)
T ss_dssp SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred CCeEEEECCCCCC--------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC----------
Confidence 8999999999642 4688999999999999999999999986544 48889999999996432
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 651 (718)
+.++.||++||+. ||+|||.+|.+++... ...|..++|||||||+|||++|||+|++|+
T Consensus 183 ~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 241 (276)
T 4dzt_A 183 DARASFSNYGSCV-------------DLFAPGASIPSAWYTS--------DTATQTLNGTSMATPHVAGVAALYLEQNPS 241 (276)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------SSCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCc-------------eEEeCCCCeEccccCC--------CCceEEeeEHHHHHHHHHHHHHHHHHHCCC
Confidence 2367899999987 8999999999998432 347899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccccC
Q 005034 652 FSPSAIASALSTSATLYDKN 671 (718)
Q Consensus 652 ls~~~ik~~L~~TA~~~~~~ 671 (718)
++++|||++|++||++....
T Consensus 242 lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 242 ATPASVASAILNGATTGRLS 261 (276)
T ss_dssp CCHHHHHHHHHHHSEESCCB
T ss_pred CCHHHHHHHHHhhCcCCccC
Confidence 99999999999999986543
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=397.19 Aligned_cols=225 Identities=30% Similarity=0.465 Sum_probs=194.5
Q ss_pred CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 005034 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (718)
Q Consensus 184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 263 (718)
.+|+||+|||||||||++||+|.++.. ..++|. ..
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~~~------------------------------~~~~~~---------------~~ 62 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGRAQ------------------------------MVKTYY---------------YS 62 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEESS---------------SC
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCccc------------------------------cccCCC---------------CC
Confidence 789999999999999999999986422 223332 12
Q ss_pred CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC-------CE
Q 005034 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-------DI 336 (718)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-------~V 336 (718)
+.|..+|||||||||+|+ ..||||+|+|+.+|+++.++.+..++++++|+|++++++ +|
T Consensus 63 ~~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~V 128 (279)
T 2pwa_A 63 SRDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVV 128 (279)
T ss_dssp SSCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccE
Confidence 457889999999999986 259999999999999988666889999999999999887 99
Q ss_pred EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (718)
Q Consensus 337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 415 (718)
||||||.. +.+.++++++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.+
T Consensus 129 in~S~G~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 186 (279)
T 2pwa_A 129 ASLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------- 186 (279)
T ss_dssp EEECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred EEecCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC--------------
Confidence 99999964 2468889999999999999999999998653 468889999999996432
Q ss_pred EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 495 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (718)
Q Consensus 496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 575 (718)
+.++
T Consensus 187 ----------------------------------------------------------------------------~~~~ 190 (279)
T 2pwa_A 187 ----------------------------------------------------------------------------DRRS 190 (279)
T ss_dssp ----------------------------------------------------------------------------SBBC
T ss_pred ----------------------------------------------------------------------------CCcC
Confidence 2367
Q ss_pred ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (718)
Q Consensus 576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~ 655 (718)
.||++||++ ||+|||.+|++++ .++.|..++|||||||||||++|||+|+ |++++.
T Consensus 191 ~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~ 246 (279)
T 2pwa_A 191 SFSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAA 246 (279)
T ss_dssp TTCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTT
T ss_pred CcCCCCCcc-------------eEEEecCCeEEee----------cCCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHH
Confidence 899999976 8999999999998 5568999999999999999999999999 999999
Q ss_pred HHHHHHHhcccccc
Q 005034 656 AIASALSTSATLYD 669 (718)
Q Consensus 656 ~ik~~L~~TA~~~~ 669 (718)
|||++|++||++..
T Consensus 247 ~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 247 SACRYIADTANKGD 260 (279)
T ss_dssp THHHHHHHHSEESC
T ss_pred HHHHHHHHhCcccc
Confidence 99999999998753
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=392.76 Aligned_cols=236 Identities=30% Similarity=0.414 Sum_probs=199.7
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++. ...++|.+.
T Consensus 23 ~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~~------------------------------~~~~d~~~~------ 62 (278)
T 2b6n_A 23 NYHT----DYDGSGVTAFVIDTGVLNTHNEFGGRA------------------------------SSGYDFIDN------ 62 (278)
T ss_dssp EEEC----SCCCTTCEEEEEESCCCTTCGGGTTCE------------------------------EEEEETTTT------
T ss_pred hccc----CCCCCCCEEEEEeCCCCCCChhHhccc------------------------------ccCeecCCC------
Confidence 6766 689999999999999999999998642 223344332
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH--C
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--D 332 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--~ 332 (718)
...+.|..+|||||||||+|.. .||||+|+|+.+|+++..+.+..++++++|+|+++ .
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 122 (278)
T 2b6n_A 63 ------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNAS 122 (278)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCC
Confidence 1345688999999999999862 59999999999999988666889999999999998 5
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+++|||||||... ...++++++.+.++|++||+||||+|.... .+|+..+++|+|||++.+
T Consensus 123 g~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 184 (278)
T 2b6n_A 123 GPAVANMSLGGGA--------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN---------- 184 (278)
T ss_dssp SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred CCeEEEECCCCCc--------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC----------
Confidence 8999999999753 367888999999999999999999998654 458889999999996432
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 651 (718)
+.++.||++||.. ||+|||.+|++++.. .++.|..++|||||||||||++|||+|++|+
T Consensus 185 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~--------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 243 (278)
T 2b6n_A 185 DSRSSFSNYGTCL-------------DIYAPGSSITSSWYT--------SNSATNTISGTSMASPHVAGVAALYLDENPN 243 (278)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTT--------STTCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCC-------------eEEeCCCCeECcccC--------CCCCEEEeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 2357899999866 899999999998743 2357899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccc
Q 005034 652 FSPSAIASALSTSATLYD 669 (718)
Q Consensus 652 ls~~~ik~~L~~TA~~~~ 669 (718)
|++.|||++|++||++..
T Consensus 244 lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 244 LSPAQVTNLLKTRATADK 261 (278)
T ss_dssp CCHHHHHHHHHHHSEESC
T ss_pred CCHHHHHHHHHHhCccCC
Confidence 999999999999998653
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=422.54 Aligned_cols=296 Identities=19% Similarity=0.215 Sum_probs=213.5
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+|||||||||++||+|.++.. . ...++|...
T Consensus 25 i~~~~-aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~-----~-----------------------~~~~d~~~~ 71 (471)
T 1p8j_A 25 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD-----P-----------------------GASFDVNDQ 71 (471)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC-----G-----------------------GGCEETTTT
T ss_pred CChHH-HHhc----CCCCCCCEEEEEeCCcCCCChhHhhccC-----c-----------------------cCcccccCC
Confidence 44434 7776 7899999999999999999999997643 0 011222221
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
. ....+...+.|.++|||||||||+|..+++ .++.||||+|+|+.+|+++. ..+++++|++|
T Consensus 72 ~------~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~g----~~~~~~~ai~~ 133 (471)
T 1p8j_A 72 D------PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSL 133 (471)
T ss_dssp B------SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHH
T ss_pred C------CCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccCC----chhHHHHHHHh
Confidence 0 000111234678899999999999975443 24589999999999999863 35689999999
Q ss_pred HHH-CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCCC----CCCCCCceEEEeee
Q 005034 329 AAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPKS----MSSFSPWIFTVGAA 398 (718)
Q Consensus 329 a~~-~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~~----~~~~~~~vitVgA~ 398 (718)
+++ ++++|||||||..............+.+++..+. .+|++||+||||+|..... .++.++++|+|||+
T Consensus 134 a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~ 213 (471)
T 1p8j_A 134 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 213 (471)
T ss_dssp TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred hhccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecc
Confidence 999 8999999999975432111112234455555544 3799999999999975321 22345889999986
Q ss_pred ccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccc
Q 005034 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478 (718)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~ 478 (718)
+.+
T Consensus 214 ~~~----------------------------------------------------------------------------- 216 (471)
T 1p8j_A 214 TQF----------------------------------------------------------------------------- 216 (471)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 532
Q ss_pred cCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEE
Q 005034 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC 558 (718)
Q Consensus 479 ~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHH
Q 005034 559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638 (718)
Q Consensus 559 ~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 638 (718)
+.++.||++||... ...+|...+||..|+++.. .++.|..++|||||||||
T Consensus 217 -------------g~~a~~S~~g~~~~-------~~~~~~~~~~g~~i~st~~---------~~~~~~~~sGTS~AaP~V 267 (471)
T 1p8j_A 217 -------------GNVPWYSEACSSTL-------ATTYSSGNQNEKQIVTTDL---------RQKCTESHTGTSASAPLA 267 (471)
T ss_dssp -------------SCCCTTCCBCTTCC-------EEEECCCSTTSCCEEEEET---------TTEEEEEECSHHHHHHHH
T ss_pred -------------CCcccccCCCCcce-------EEeCCCCCCCCCCEEEeeC---------CCCccccCCCcccccchh
Confidence 23678999999875 2445555666779999873 234789999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 639 AGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 639 AG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
||++|||+|++|+|++.+||++|++||++++........+ ......+..||||+||+.+||+.
T Consensus 268 AG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--------~~g~~~~~~~G~G~vda~~Av~~ 330 (471)
T 1p8j_A 268 AGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVAL 330 (471)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--------CCCcccCCCCCCEEEcHhHHHHH
Confidence 9999999999999999999999999999876532210000 01112357899999999999863
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=419.33 Aligned_cols=284 Identities=22% Similarity=0.242 Sum_probs=212.2
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||+|.++... .+.++|...
T Consensus 46 aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~~~~----------------------------~~~~d~~~~------ 87 (503)
T 2id4_A 46 LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCA----------------------------EGSWDFNDN------ 87 (503)
T ss_dssp HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCG----------------------------GGCEETTTT------
T ss_pred HHhc----CCCCCCeEEEEEeCCCCCCChhHhhcccc----------------------------cCcccCCCC------
Confidence 6776 79999999999999999999999986440 012233322
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
..+.....|.++|||||||||+|..+++ .++.||||+|+|+.+|+++. .+...+++++|+|+++++
T Consensus 88 ---~~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~- 153 (503)
T 2id4_A 88 ---TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN- 153 (503)
T ss_dssp ---BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-
T ss_pred ---CCCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-
Confidence 0011223578899999999999976433 24579999999999999974 367889999999999988
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCC--CCCC--CCCceEEEeeeccCCcee
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPK--SMSS--FSPWIFTVGAASHDRIYT 405 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~--~~~~--~~~~vitVgA~~~~~~~~ 405 (718)
+|||||||..............+.+++..+. .+|++||+||||+|.... .++. .++++|+|||++.+
T Consensus 154 ~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~---- 229 (503)
T 2id4_A 154 DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK---- 229 (503)
T ss_dssp SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----
T ss_pred CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC----
Confidence 9999999976432111222345666666665 479999999999997532 2332 46789999986432
Q ss_pred eeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHH
Q 005034 406 NSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIK 485 (718)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 485 (718)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccc
Q 005034 486 QAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA 565 (718)
Q Consensus 486 ~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (718)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCceeccccCCCCCCCCCCCCCCCCCCceec----cCCceeecccCCCCCCccccCccccccCchhhhhHHHHHH
Q 005034 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA----PGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL 641 (718)
Q Consensus 566 ~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 641 (718)
+.++.||++||.. |++| ||..|+++.. .++.|..++|||||||||||+
T Consensus 230 ------~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~AaP~VAG~ 281 (503)
T 2id4_A 230 ------DLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGV 281 (503)
T ss_dssp ------SCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccccchhhhHH
Confidence 2357899999987 7777 8999999842 355799999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 642 AALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 642 aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
+|||+|++|+|++.|||.+|+.||++++....+-... .......+..||||+||+.+||+.
T Consensus 282 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~-------~~~g~~~~~~~G~G~vda~~Av~~ 342 (503)
T 2id4_A 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD-------SAMGKKYSHRYGFGKIDAHKLIEM 342 (503)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEE-------CSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCcee-------cCCCCccCcccCCcEecHHHHHHH
Confidence 9999999999999999999999999876431100000 001112356899999999999863
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=411.44 Aligned_cols=284 Identities=21% Similarity=0.242 Sum_probs=206.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|+|||||||++||+|.++.. ...+++... .+......
T Consensus 22 ~~tG~GV~VaVIDTGId~~HpdL~gr~~-----------------------------~~~~~~v~~------~dg~~f~~ 66 (546)
T 2qtw_B 22 PDGGSLVEVYLLDTSIQSDHREIEGRVM-----------------------------VTDFENVPE------EDGTRFHR 66 (546)
T ss_dssp --CCTTSEEEEEESCCCTTSTTTTTTEE-----------------------------EEEEECCCC------CC------
T ss_pred CCCCCCcEEEEECCCCCCCChHHccccc-----------------------------ccCcccccC------CCCccccC
Confidence 6899999999999999999999997543 000000000 00000002
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC------CCCE
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDI 336 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~V 336 (718)
.+.|..||||||||||+|.. .||||+|+|+.+|+++.++.++.++++++|+|+++. +++|
T Consensus 67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V 132 (546)
T 2qtw_B 67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV 132 (546)
T ss_dssp -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence 34578999999999999873 599999999999999876668899999999999984 8999
Q ss_pred EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (718)
Q Consensus 337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 415 (718)
||||||+. +...++++++.+.++|++||+||||+|.+. ..+|+..+++|+|||++.++....
T Consensus 133 INmSlGg~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a~--------- 195 (546)
T 2qtw_B 133 VLLPLAGG--------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVT--------- 195 (546)
T ss_dssp EEECEEEE--------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBCE---------
T ss_pred EEecCCCC--------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCccc---------
Confidence 99999964 246889999999999999999999999865 345888999999999764321000
Q ss_pred EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 495 (718)
T Consensus 196 -------------------------------------------------------------------------------- 195 (546)
T 2qtw_B 196 -------------------------------------------------------------------------------- 195 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (718)
Q Consensus 496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 575 (718)
.-.
T Consensus 196 -----------------------------------------------------------------------------~s~ 198 (546)
T 2qtw_B 196 -----------------------------------------------------------------------------LGT 198 (546)
T ss_dssp -----------------------------------------------------------------------------ETT
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 001
Q ss_pred ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (718)
Q Consensus 576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~ 655 (718)
.||++||.+ ||+|||.+|+++++.. ++.|..++|||||||||||++|||+|++|++++.
T Consensus 199 ~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~ 257 (546)
T 2qtw_B 199 LGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 257 (546)
T ss_dssp EECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred CcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHH
Confidence 278898755 9999999999998532 2478999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCccccccccCCCCC-CCCCCCCCcccccc--ccccccCCCC
Q 005034 656 AIASALSTSATLYDKNGGPIMAQRAYAKPDE-NQSPATPFDMGSGF--VNATASLDPG 710 (718)
Q Consensus 656 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~G~--vn~~~Al~~~ 710 (718)
|||++|++||.+.......++.......|.. ...+..+..+|+|+ .++..+....
T Consensus 258 qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s~~ 315 (546)
T 2qtw_B 258 ELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGP 315 (546)
T ss_dssp HHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCCCS
T ss_pred HHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCCCC
Confidence 9999999999764322211110000001110 01112456789999 8888887543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=386.81 Aligned_cols=227 Identities=32% Similarity=0.464 Sum_probs=194.6
Q ss_pred CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 005034 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (718)
Q Consensus 184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 263 (718)
.+|+||+|||||||||++||+|.++.. ...+|.. .
T Consensus 29 ~~G~gv~VaViDtGvd~~h~~l~~~~~------------------------------~~~~~~~---------------~ 63 (279)
T 3f7m_A 29 SAGAGACVYVIDTGVEDTHPDFEGRAK------------------------------QIKSYAS---------------T 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEECSS---------------S
T ss_pred CCCCCCEEEEEcCCCCCCChhhccccc------------------------------cccCCCC---------------C
Confidence 599999999999999999999986432 2233322 1
Q ss_pred CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCC-------CCE
Q 005034 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG-------VDI 336 (718)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g-------~~V 336 (718)
..|.+||||||||||+|+. .||||+|+|+.+|+++..+.+...+++++|+|+++++ ++|
T Consensus 64 ~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~V 129 (279)
T 3f7m_A 64 ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTV 129 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeE
Confidence 1278899999999999762 5999999999999998867789999999999999876 899
Q ss_pred EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC-CCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (718)
Q Consensus 337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 415 (718)
||||||.. +...++++++.+.++|++||+||||+|..... +|+..+++|+|||++.+
T Consensus 130 in~S~g~~--------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 187 (279)
T 3f7m_A 130 ASMSLGGG--------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN-------------- 187 (279)
T ss_dssp EEECCCEE--------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred EEeCCCcC--------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC--------------
Confidence 99999964 34788999999999999999999999986543 47889999999996432
Q ss_pred EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 495 (718)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (718)
Q Consensus 496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 575 (718)
+.++
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (279)
T 3f7m_A 188 ----------------------------------------------------------------------------DVRS 191 (279)
T ss_dssp ----------------------------------------------------------------------------SBBC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2367
Q ss_pred ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (718)
Q Consensus 576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~ 655 (718)
.||++||.. ||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|. +++
T Consensus 192 ~~S~~g~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~ 247 (279)
T 3f7m_A 192 TFSNYGRVV-------------DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAG 247 (279)
T ss_dssp TTCCBSTTC-------------CEEEECSSEEEEC----------GGGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTT
T ss_pred CCCCCCCCC-------------eEEECCCCeEeec----------CCCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHH
Confidence 899999976 8999999999998 5668999999999999999999999999999 999
Q ss_pred HHHHHHHhcccccccC
Q 005034 656 AIASALSTSATLYDKN 671 (718)
Q Consensus 656 ~ik~~L~~TA~~~~~~ 671 (718)
+||++|++||++....
T Consensus 248 ~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 248 AMCGRIQTLSTKNVLT 263 (279)
T ss_dssp THHHHHHHHSEESCCB
T ss_pred HHHHHHHHhccccccc
Confidence 9999999999875443
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=415.70 Aligned_cols=244 Identities=25% Similarity=0.350 Sum_probs=179.4
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CHHHHHHHHHHHHH-----CCCCEE
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQ-----DGVDII 337 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~~~i~~ai~~a~~-----~g~~Vi 337 (718)
.|++||||||||||+|.. ++ .++.||||+|+|+.+|+++...+. ...+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478899999999999985 22 356899999999999999764332 45677777777777 799999
Q ss_pred EEcCCCCCCCCCCCccccHHHHHHHHHH-HCCCEEEEecCCCCCCCC--CCCCC--CCceEEEeeeccCCceeeeEEeCC
Q 005034 338 SLSITPNRRPPGIATFFNPIDMALLSAA-KAGIFVVQAAGNTGPSPK--SMSSF--SPWIFTVGAASHDRIYTNSIILGN 412 (718)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~-~~GilvV~AAGN~g~~~~--~~~~~--~~~vitVgA~~~~~~~~~~~~~~~ 412 (718)
|||||...... ....+..++..+. ++|++||+||||+|.+.. .+|+. ++++|+|||++.+......+..
T Consensus 338 NmS~G~~~~~~----~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~-- 411 (1354)
T 3lxu_X 338 NMSYGEHANWS----NSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM-- 411 (1354)
T ss_dssp EECCCCCCSCS----SCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC------
T ss_pred EcCCccCCCCC----ccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc--
Confidence 99999875432 2356777777775 899999999999998643 36774 8999999998654321100000
Q ss_pred CceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHH
Q 005034 413 SLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAK 492 (718)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (718)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCC
Q 005034 493 NLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAP 572 (718)
Q Consensus 493 ~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (718)
.....+
T Consensus 412 --------------------------------------------------------------------------~~~~~g 417 (1354)
T 3lxu_X 412 --------------------------------------------------------------------------REKLPG 417 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 001124
Q ss_pred ceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----h
Q 005034 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----K 648 (718)
Q Consensus 573 ~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~ 648 (718)
.+++|||+||+.+ ++.||||+|||++|+++... .++.|..++|||||||||||++|||++ +
T Consensus 418 ~~asFSS~GPt~d-------g~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~ 482 (1354)
T 3lxu_X 418 NVYTWTSRDPCID-------GGQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQ 482 (1354)
T ss_dssp CCCCCCCCSCCSS-------SSCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCcc-------CCCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 5799999999986 79999999999999997532 245899999999999999999999986 8
Q ss_pred CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCee
Q 005034 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV 712 (718)
Q Consensus 649 ~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~ 712 (718)
+|++++.+||++|++||++++.. ++..||+|+||+.+|++..+.
T Consensus 483 ~P~LTp~qVk~lL~~TA~~~~~~--------------------~~~~~G~GlLDa~~AV~~a~~ 526 (1354)
T 3lxu_X 483 NIEYSPYSIKRAISVTATKLGYV--------------------DPFAQGHGLLNVEKAFEHLTE 526 (1354)
T ss_dssp TCCCCHHHHHHHHHTTSBCCTTS--------------------CTTTSSSSBCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCccCCCC--------------------CcccccCCEeCHHHHHHHHHh
Confidence 99999999999999999987532 246799999999999975443
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=403.88 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=110.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||||||++||||.++... +.++|..+
T Consensus 62 aw~~----g~tG~GV~VaViDtGid~~HpDL~~n~~~-----------------------------~~~~~~~~------ 102 (600)
T 3hjr_A 62 AHRT----GVLGQGVNVAVVDDGLAIAHPDLADNVRP-----------------------------GSKNVVTG------ 102 (600)
T ss_dssp HHHH----TCSCTTCEEEEESSCCCTTCTTTGGGBCS-----------------------------CCBCTTTS------
T ss_pred HHHc----CCCCCCeEEEEEcCCCCCCChhHhhcccc-----------------------------CcceeecC------
Confidence 6776 79999999999999999999999986440 11112111
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH-HHHHHCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI-DQAAQDG 333 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai-~~a~~~g 333 (718)
..+.....|.++|||||||||||..+ + .++.||||+|+|+.+|+++....+..++++.++ +++..++
T Consensus 103 ---~~dp~p~~~~~gHGThVAGiIAa~~n-~--------~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~ 170 (600)
T 3hjr_A 103 ---SDDPTPTDPDTAHGTSVSGIIAAVDN-A--------IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRD 170 (600)
T ss_dssp ---SSCCCCCSTTCCHHHHHHHHHHCCSS-S--------SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHT
T ss_pred ---CCCCCCCCCCCChHHHHHHHHhEeCC-C--------CCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcC
Confidence 11112234678999999999998642 1 245799999999999999886778888888776 6678889
Q ss_pred CCEEEEcCCCCCCCCCC--CccccHHHHHHHHH--HHCCCEEEEecCCCCC
Q 005034 334 VDIISLSITPNRRPPGI--ATFFNPIDMALLSA--AKAGIFVVQAAGNTGP 380 (718)
Q Consensus 334 ~~ViN~S~G~~~~~~~~--~~~~~~~~~a~~~a--~~~GilvV~AAGN~g~ 380 (718)
++|||||||........ ......++.++... ..+|+++|+||||.+.
T Consensus 171 ~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~ 221 (600)
T 3hjr_A 171 NRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN 221 (600)
T ss_dssp CSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred CCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence 99999999975432111 11122333333322 3579999999999875
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-26 Score=257.59 Aligned_cols=100 Identities=28% Similarity=0.386 Sum_probs=80.9
Q ss_pred ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEE
Q 005034 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (718)
Q Consensus 295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~---~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gilv 371 (718)
.+.||||+|+|+.+++.+ ...+++++|+|+++ ++++|||||||...... ...+.+.++.++..|..+||+|
T Consensus 273 ~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~-~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSW-APASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGS-CHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccC-CHHHHHHHHHHHHHHHhCCeEE
Confidence 457999999999999732 45789999999998 78999999999764211 0123457888888899999999
Q ss_pred EEecCCCCCCC--------CCCCCCCCceEEEeeecc
Q 005034 372 VQAAGNTGPSP--------KSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 372 V~AAGN~g~~~--------~~~~~~~~~vitVgA~~~ 400 (718)
|+||||+|... ..+|+.+|+|++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 457788999999999864
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-23 Score=219.92 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=81.4
Q ss_pred cccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecC
Q 005034 298 GMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAG 376 (718)
Q Consensus 298 GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAG 376 (718)
.+||+++++.+++.+. .....++++.+|+||++ ++++|||||||..........+.+.++++++.+..+||+||+|||
T Consensus 91 ~~aP~a~~~~~~~~~~-~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 91 SAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hcCCCCcEEEEEeCCC-CCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 5789999999999865 23566789999999998 899999999997532100012346788899999999999999999
Q ss_pred CCCCCC-------------CCCCCCCCceEEEeeecc
Q 005034 377 NTGPSP-------------KSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 377 N~g~~~-------------~~~~~~~~~vitVgA~~~ 400 (718)
|+|... ..+|+.+|+|++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 999753 246788999999999874
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=129.44 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=66.4
Q ss_pred ccccCCceEEEEeecccCCCCCHHHHHHHHHHHH--HCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEe
Q 005034 297 SGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA--QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQA 374 (718)
Q Consensus 297 ~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~--~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~A 374 (718)
.+++++..++.+..... ......++..+.+.. .+-+.|||+|||....... ..+.+.++.++..+..+||.|++|
T Consensus 262 ~a~~~~i~~~~~~~~g~--~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~-~~y~~~~~~~~~~~~~~Gitv~~A 338 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR--HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLS-SAYIQRVNTELMKAAARGLTLLFA 338 (544)
T ss_dssp HHHSTTSEEEEECCCSC--CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSC-HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCceEEEEecCCc--ccccccHHHHHHHHhccCCCCcEEEecCCCcccccC-HHHHHHHHHHHHHHHhCCeEEEEe
Confidence 35566666655543221 111122333343333 2458999999998653211 234566778888899999999999
Q ss_pred cCCCCCCC----------CCCCCCCCceEEEeeecc
Q 005034 375 AGNTGPSP----------KSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 375 AGN~g~~~----------~~~~~~~~~vitVgA~~~ 400 (718)
+||+|..+ ..+|+.+|+|++||+++.
T Consensus 339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99999754 356788999999999864
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-07 Score=75.09 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=43.5
Q ss_pred CCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccC
Q 005034 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT 163 (718)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 163 (718)
..+.++.++|.. ++||++++++++++.|+++|+|.+||++..+++..+
T Consensus 31 ~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt 78 (80)
T 3cnq_P 31 EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSA 78 (80)
T ss_dssp TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC
T ss_pred HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeee
Confidence 346789999997 999999999999999999999999999999988654
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=75.95 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=41.4
Q ss_pred CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
.+..+.++|...++||+++++++++++|+++|+|.+||++..++.
T Consensus 69 ~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 69 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp CCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred cCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 466889999889999999999999999999999999999988764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-06 Score=73.38 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=41.2
Q ss_pred CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
.+.++.++|...++||++++++++++.|+++|+|.+||++..++.
T Consensus 79 ~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 79 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred cCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 456889999889999999999999999999999999999988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=64.96 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=38.4
Q ss_pred CceEEEEe-cceeeeEEEEeCHHHHHHHhcC--CCeEEEEeCceecc
Q 005034 117 KYLKLYSY-HYLINGFSVFVTPQQAEKLSRR--REVANVVSDFSVRT 160 (718)
Q Consensus 117 ~~~~~~~~-~~~~ng~~v~~~~~~~~~L~~~--p~V~~v~~~~~~~~ 160 (718)
+.++.+.| ..+++||+++++++.++.|+++ |.|.+||++..+..
T Consensus 29 gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 34677778 4699999999999999999999 89999999988764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0018 Score=61.81 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=60.8
Q ss_pred cccccCCCCCCccC------CcCceEEEEEeecccccCc-chHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCC
Q 005034 449 YVGECQDSSNFNQD------LVQGNLLICSYSIRFVLGL-STIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMK 518 (718)
Q Consensus 449 ~~~~c~~~~~~~~~------~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~ 518 (718)
....|.....+... ..+|+|+|+.| |. |+|.+|+.+++++||.++|+||+.... .....+....
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~ 155 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVD 155 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCS
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCc
Confidence 35688754433211 24789999998 67 999999999999999999999985211 1111223356
Q ss_pred CCeEEecCcchHHHHHHHHhcc
Q 005034 519 MPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 519 ~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
||.++| +..++..|++++...
T Consensus 156 IPsv~I-s~~~G~~L~~~L~~G 176 (194)
T 3icu_A 156 IVAIMI-GNLKGTKILQSIQRG 176 (194)
T ss_dssp SEEEEE-CHHHHHHHHHHHHTT
T ss_pred eeEEEE-CHHHHHHHHHHHHCC
Confidence 888777 667788999888764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=49.26 Aligned_cols=48 Identities=23% Similarity=0.200 Sum_probs=41.8
Q ss_pred HhcCCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 112 AFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
.....+.++.++|. .++++++++|++.++.|+++|+|++||+|..++.
T Consensus 17 ~i~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 17 EVLGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp GGGGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred HHHHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 34456889999995 7999999999999999999999999999987653
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.26 Score=53.60 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.0
Q ss_pred ceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeeccc
Q 005034 548 KKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWS 611 (718)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~ 611 (718)
.++|+|+++ ...+.++.||++||.. ||+|||++|+++++
T Consensus 172 ~~vi~VgA~------------~~~~~~~~~S~~g~~v-------------dv~ApG~~i~s~~~ 210 (441)
T 1y9z_A 172 DSVMSVAAV------------DSNLDHAAFSQYTDQV-------------EISGPGEAILSTVT 210 (441)
T ss_dssp TTEEEEEEE------------CTTCCBCTTSCCCTTE-------------EEEEECSSEEEECS
T ss_pred CCeEEEEEE------------CCCCCCCccccCCCce-------------EEEeccCCeecccc
Confidence 367888875 3346789999999876 99999999999985
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.23 Score=60.19 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=23.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFAD 207 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~ 207 (718)
.|+|+||+|||+|||||+.+|-|+-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5999999999999999999999984
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=1.3 Score=47.80 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=53.6
Q ss_pred CCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc--cCcccCCCCCCCCeEEecCcchHHHHHH
Q 005034 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV--IGFQLNPTPMKMPGIIIPSPDDSKILLQ 535 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 535 (718)
.+...+++|||+++.+ +.|.+.++..++...||.|+|+|++... .+.........+|.+.+ +..++..|..
T Consensus 107 D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~I-s~~~a~~L~~ 179 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI-TKQEGDALAA 179 (421)
T ss_dssp TTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEE-CHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEe-CHHHHHHHHH
Confidence 3444478999999987 5678899999999999999999998632 12111223456888775 5667888888
Q ss_pred HH
Q 005034 536 YY 537 (718)
Q Consensus 536 ~~ 537 (718)
.+
T Consensus 180 ~l 181 (421)
T 2ek8_A 180 NL 181 (421)
T ss_dssp HH
T ss_pred Hh
Confidence 77
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 718 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-31 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-12 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-04 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 3e-05 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-10 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-10 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 2e-10 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.002 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-09 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-09 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-09 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-06 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-08 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-08 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-06 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-08 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-05 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 3e-05 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 125 bits (313), Expect = 3e-31
Identities = 84/534 (15%), Positives = 159/534 (29%), Gaps = 131/534 (24%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
++ I ID+G D +H +
Sbjct: 17 SDSQAGNRTICIIDSGYDRSHNDLNANN-------------------------------- 44
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
+T + + ++ P + + HG+H A A + G+ P
Sbjct: 45 --------VTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAI---------ANNEGVVGVMP 87
Query: 302 RSHIAVY--KALYKSFGGFAADVVAAIDQAAQDG-VDIISLSITPNRRPPGIATFFNPID 358
+ ++ K ++ G+++ +VAAID G +++++S+ + N
Sbjct: 88 NQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHY 147
Query: 359 MALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418
G+ ++ AAGN G S S + + +V A + + + + I
Sbjct: 148 N-------NGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI-- 198
Query: 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478
+ L + D+ +G SN + SY+
Sbjct: 199 ---------SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYA---- 245
Query: 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYN 538
N SA G + F K+ + S
Sbjct: 246 ----------PAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINST 295
Query: 539 SSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDD--ADIMK 596
+ + I+Y ++ P ++ FL D +DI
Sbjct: 296 K------------------------ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 597 PNLVAPGNSIWAAWSSLG--TDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654
P++ + A + LG T + + +GTSMA PH++G+A L+ P S
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
S + +AL+ +A G G +NA A+
Sbjct: 392 SQVRAALNATADDLS-------------------VAGRDNQTGYGMINAVAAKA 426
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 65.4 bits (158), Expect = 4e-12
Identities = 57/243 (23%), Positives = 87/243 (35%), Gaps = 63/243 (25%)
Query: 166 PQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICE 225
PQ AW G G I IDTG+D THP +
Sbjct: 15 PQNTYTDY-AWDVTKG----SSGQEIAVIDTGVDYTHPDLDGKVIKG------------- 56
Query: 226 VTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIP 285
++ + P D + HG+H A +AA
Sbjct: 57 -----------------------------YDFVDNDYDPMDLNNHGTHVAGIAAAET--- 84
Query: 286 VVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNR 345
++ +GMAP + I +AL ++ G +D+ AI AA G ++I+LS+ +
Sbjct: 85 -----NNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC 139
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRIY 404
++ A+ A G VV AAGN G S + + VGA +DR+
Sbjct: 140 -------HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA 192
Query: 405 TNS 407
+ S
Sbjct: 193 SFS 195
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 23/99 (23%)
Query: 610 WSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYD 669
+ G +A MSGTSMA+PH+AGLAAL+ + + I A+ +A
Sbjct: 204 VAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTAD--- 258
Query: 670 KNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ T G +N+ ++
Sbjct: 259 ------------------KISGTGTYFKYGRINSYNAVT 279
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 64.9 bits (156), Expect = 6e-12
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 595 MKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654
+ APG+S+++ W + G + +SGTSMA PH++GLAA I + PS S
Sbjct: 223 GDIEISAPGSSVYSTWYNGG----------YNTISGTSMATPHVSGLAAKIWAENPSLSN 272
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVN 702
+ + S L A D GG + + G GF
Sbjct: 273 TQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFAD 207
T G G+ I +DTG++ +HP +
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 597 PNLVAPGNSIWAAWSSLGTDSVEFQ--------GESFAMMSGTSMAAPHIAGLAALIKQK 648
++ APG +I + + E G ++ GTSMAAPH+ G+ A++ QK
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
FP+ P I L +A ++ NG D G G V A+L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNG-------------------WDHDTGYGLVKLDAALQ 438
Query: 709 PGLVFD 714
L
Sbjct: 439 GPLPTQ 444
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 62.0 bits (149), Expect = 1e-10
Identities = 65/421 (15%), Positives = 106/421 (25%), Gaps = 83/421 (19%)
Query: 45 YIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNISRV 104
+V V + + + NG ++ ++ G + +
Sbjct: 34 ILVGYNDRSEVDKIVKAV------------NGKVVLELPQIKVVSIKLN----GMTVKQA 77
Query: 105 HDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTH 164
+D I A KG +Y++ LI V P + +
Sbjct: 78 YDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWG 137
Query: 165 TPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGIC 224
+G+ Q W E +G +++ +DTG+D THP P
Sbjct: 138 LEA-IGVTQQLW-----EEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPA-------- 183
Query: 225 EVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGI 284
G G+H A A
Sbjct: 184 -----------------------------FDEELPAGTDSSYGGSAGTHVAGTIAAKKDG 214
Query: 285 PVVVTGHHFGNASGMAPRSHIAVYKALYKSFG------GFAADVVAAIDQAAQDGVDIIS 338
+V G+AP + I V A I A G +++
Sbjct: 215 KGIV---------GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMN 265
Query: 339 LSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S + F+ + + VV A NT S + P + V A
Sbjct: 266 HSWGGWGYSYTMKEAFD------YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAAL 319
Query: 399 SHDRIYTNSIILGNSLTISGVGL-APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSS 457
D + G S GV + APG + T+ G D
Sbjct: 320 --DYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYY 377
Query: 458 N 458
Sbjct: 378 Q 378
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 60.4 bits (145), Expect = 2e-10
Identities = 27/268 (10%), Positives = 55/268 (20%), Gaps = 55/268 (20%)
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPS-FADDASEHSYPVPS 218
TA H P I + +G I G S +
Sbjct: 3 TAKGHNPTEF-----PTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLA--- 54
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVA 278
++Q + +
Sbjct: 55 ------------------------------------SVNTQTIQTGSSNGDYSDDQQGQG 78
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-GVDII 337
+ +V A + + + + A +QA D +I
Sbjct: 79 EWDLDSQSIVG---------SAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVI 129
Query: 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA 397
++S+ D +AA G ++G+ G + + +
Sbjct: 130 NVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVS 189
Query: 398 ASHDRIYTNSIILGNSLTISGVGLAPGT 425
++ T S + T
Sbjct: 190 WPASSPNVIAVGGTTLYTTSAGAYSNET 217
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.4 bits (88), Expect = 0.002
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
N + ++ + G +S ++ + ++ GT ++ +
Sbjct: 219 WNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQ 278
Query: 625 FAMMSGTSMAAPHIAGLAALIKQKFPS----FSPSAIASALSTSATLYDKNGG 673
+ GTS+A+P GL A ++ + + S ++ ST + ++D G
Sbjct: 279 LQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKSG 331
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 57.2 bits (137), Expect = 1e-09
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+ +++APG SI + G + +GTSMA+PH+AG AALI K P+++ +
Sbjct: 195 ELDVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNT 244
Query: 656 AIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ S+L + T F G G +N A+
Sbjct: 245 QVRSSLENTTT----------------------KLGDSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 55.3 bits (132), Expect = 7e-09
Identities = 42/245 (17%), Positives = 68/245 (27%), Gaps = 59/245 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G V + ID+GID +HP
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKV-------------------------------------- 44
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
G + +PF + G H V ++ G+AP + +
Sbjct: 45 ------AGGASMVPSETNPFQDNNSH--------GTHVAGTVAALNNSIGVLGVAPSASL 90
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L G + ++ I+ A + +D+I+ P G A +D A+ S
Sbjct: 91 YAVKVLGADGSGQYSWIINGIEWAIANNMDVIN---MSLGGPSGSAALKAAVDKAVASGV 147
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425
+ S P + VGA + +G L + APG
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVM----APGV 203
Query: 426 DKMYT 430
T
Sbjct: 204 SIQST 208
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 56.5 bits (135), Expect = 3e-09
Identities = 55/261 (21%), Positives = 88/261 (33%), Gaps = 68/261 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G V + +DTGI +HP F +G
Sbjct: 23 GANVKVAVLDTGIQASHPDLNVVGG-----------------ASFVAGE----------- 54
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
A DG+GH G H V + G+AP +
Sbjct: 55 ----------------AYNTDGNGH---------GTHVAGTVAALDNTTGVLGVAPSVSL 89
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L S G + +V+ I+ A +G+D+I++S+ + A+ +A
Sbjct: 90 YAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS-------GSTAMKQAVDNAY 142
Query: 366 KAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421
G+ VV AAGN+G S + + + + VGA + + +G L +
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVM---- 198
Query: 422 APGTDKMYTLISALHALNNNT 442
APG T + +A N T
Sbjct: 199 APGAGVYSTYPTNTYATLNGT 219
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 55.3 bits (132), Expect = 6e-09
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+ ++APG +++ + + ++A ++GTSMA+PH+AG AALI K P+ S S
Sbjct: 194 ELEVMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 656 AIASALSTSAT 666
+ + LS++AT
Sbjct: 244 QVRNRLSSTAT 254
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 7e-09
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 621 QGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRA 680
G GTS AAP AG+ L+ + P+ + + SA +KN A
Sbjct: 253 NGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA 312
Query: 681 YAKPDENQSPATPFDMGSGFVNATASLD 708
K ++ G G ++A ++
Sbjct: 313 MGKKYSHR-------YGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 31/213 (14%), Positives = 53/213 (24%), Gaps = 53/213 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GVV +D G+D + D+
Sbjct: 45 GAGVVAAIVDDGLDYENEDLKDN------------------------------------- 67
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
G ++ + + P H A + G+ + I
Sbjct: 68 ---FCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAK-----KGNNFCGVGVGYNAKI 119
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
+ + L D A++ D DI S S P + + + AL+
Sbjct: 120 SGIRILSGDITT--EDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGV 176
Query: 366 -----KAGIFVVQAAGNTGPSPKSMSSFSPWIF 393
G V A+GN G + +
Sbjct: 177 TEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNS 209
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 55.5 bits (132), Expect = 1e-08
Identities = 41/225 (18%), Positives = 58/225 (25%), Gaps = 63/225 (28%)
Query: 160 TATTHTPQFL----GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
T +TP + P+G G+G I I G S A +
Sbjct: 2 APTAYTPLDVAQAYQFPEG---------LDGQGQCIAIIALGGGYDETSLAQYFASLGVS 52
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
P DG +
Sbjct: 53 APQV-------------------------------------------VSVSVDGATNQPT 69
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335
G G A +AP + IAVY A G A
Sbjct: 70 GDPNGPDGE----VELDIEVAGALAPGAKIAVYFAPNTDAGFLNAI--TTAVHDPTHKPS 123
Query: 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP 380
I+S+S A+ ++ A L AA G+ V+ AAG++G
Sbjct: 124 IVSISWGGPEDSWAPAS-IAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA--PGNSIWAAWSSLGT------- 615
A S ++ ++ +A G S A V N+ A++S G
Sbjct: 136 AVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAP 195
Query: 616 ---DSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
+ G ++A ++GTSMA PH+AG AAL+KQK PS+S I + L +AT
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 49/232 (21%), Positives = 76/232 (32%), Gaps = 61/232 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV + +DTGI THP F G
Sbjct: 23 GSGVKVAVLDTGIS-THPDLNIRGG-----------------ASFVPGE----------- 53
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
S DG+GHG+H A A ++ G+AP + +
Sbjct: 54 ----------------PSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAEL 88
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L S G + + ++ A +G+ + +LS+ ++ A+ SA
Sbjct: 89 YAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-------PSATLEQAVNSAT 141
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTIS 417
G+ VV A+GN+G S + VGA + + G L I
Sbjct: 142 SRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 595 MKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM--MSGTSMAAPHIAGLAALIKQKFP-- 650
+KP+++APG I +A SSL DS + M GTSMA P +AG A +++ F
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKN 275
Query: 651 ---SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASL 707
+ PS + +AL A + + G G V SL
Sbjct: 276 RGITPKPSLLKAALIAGA-------------------ADIGLGYPNGNQGWGRVTLDKSL 316
Query: 708 D 708
+
Sbjct: 317 N 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 50/177 (28%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++ DTG+D + F G +
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMH---------EAFRGKITALYALGRTN----------- 60
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ D +GHG+H A + GMAP++++
Sbjct: 61 -----------------NANDTNGHGTHVAG-----------SVLGNGSTNKGMAPQANL 92
Query: 306 AVYKALYK--SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA 360
+ GG +++ QA G I + S N D
Sbjct: 93 VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYV 149
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 604 NSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663
S+ + + G S +SGTSMA PH+AGLAA + + + SA T
Sbjct: 196 GSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADT 255
Query: 664 SATLYDKNGG 673
+ N
Sbjct: 256 ANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFA---------DDASEHSYPVPSHFSGIC 224
E+AG+G + IDTGI+ +HP F +S +H +G
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTV 77
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 4e-08
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAY 681
+ +GTS +AP AG+ AL + + + + + ++ N
Sbjct: 250 QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVG 309
Query: 682 AKPDENQSPATPFDMGSGFVNATASLD 708
K G G ++A A +
Sbjct: 310 RKVSH--------SYGYGLLDAGAMVA 328
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD 207
G G+V+ +D GI+ HP A
Sbjct: 36 GHGIVVSILDDGIEKNHPDLAG 57
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 40/218 (18%), Positives = 63/218 (28%), Gaps = 57/218 (26%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G G I +DTG+ HP A
Sbjct: 27 AEGSGAKIAIVDTGVQSNHPDLAG------------------------------------ 50
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ + +G+G T + ++ +G AP++
Sbjct: 51 --------KVVGGWDFVDNDSTPQNGNGHGT------HCAGIAAAVTNNSTGIAGTAPKA 96
Query: 304 HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLS 363
I + L S G V I AA G +ISLS G + + A+
Sbjct: 97 SILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLS-------LGGTVGNSGLQQAVNY 149
Query: 364 AAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
A G VV AAGN G + + ++ V + +
Sbjct: 150 AWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN 187
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAK 683
++A +SGTSMA PH+AG+A L+ + S S I +A+ +A
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTAD----------------- 257
Query: 684 PDENQSPATPFDMGSGFVNATASLD 708
+ T G VNA ++
Sbjct: 258 ----KISGTGTYWAKGRVNAYKAVQ 278
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 718 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.97 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.34 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.97 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 87.35 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 84.29 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.9e-53 Score=491.24 Aligned_cols=337 Identities=23% Similarity=0.292 Sum_probs=253.0
Q ss_pred CceEEEEecceeeeEEEEeCHHHH----HHH--hcCCCeEEEEeCceeccccC----CCCC-------------------
Q 005034 117 KYLKLYSYHYLINGFSVFVTPQQA----EKL--SRRREVANVVSDFSVRTATT----HTPQ------------------- 167 (718)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~~----~~L--~~~p~V~~v~~~~~~~~~~~----~~~~------------------- 167 (718)
+.+++.++. .++.+.++++...+ +.+ ..+|+|++|||+...++... ..+.
T Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T d1r6va_ 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence 345666664 56777887665332 232 35899999999866543210 0000
Q ss_pred ---------ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCce
Q 005034 168 ---------FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238 (718)
Q Consensus 168 ---------~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (718)
.+++++..|+. ++|+||+|||||||||++||+|.++..
T Consensus 131 ~~~~~w~l~~i~~~~a~~~~-----~tG~gV~VaViDtGvd~~Hpdl~~~~~---------------------------- 177 (671)
T d1r6va_ 131 LSNELWGLEAIGVTQQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVI---------------------------- 177 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBC----------------------------
T ss_pred ccccCcChhhcCccHHHHhc-----CCCCCCEEEEEcCCcCCCChhhcCCcc----------------------------
Confidence 02222323443 799999999999999999999997644
Q ss_pred eeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeeccc-----
Q 005034 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK----- 313 (718)
Q Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~----- 313 (718)
..+++..+ +......++.|..+|||||||||+|..+. .++.||||+|+|+++|++++
T Consensus 178 --~~~~~~~~-------~~~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~ 239 (671)
T d1r6va_ 178 --AGYRPAFD-------EELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVG 239 (671)
T ss_dssp --CEEEGGGT-------EEECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHC
T ss_pred --cCcccccc-------CCCCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccC
Confidence 11111110 00011134557789999999999997532 35689999999999999864
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCc
Q 005034 314 -SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPW 391 (718)
Q Consensus 314 -~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~ 391 (718)
.+......++++|+||+++|++|||||||+.. ....++.+++.+.++|+++|+||||++.+. ..+|+..|+
T Consensus 240 ~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~ 312 (671)
T d1r6va_ 240 GNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPG 312 (671)
T ss_dssp TTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTT
T ss_pred CCCcccHHHHHHHHHHHHhCCCcEEeccccccc-------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCc
Confidence 12356778999999999999999999999753 346788899999999999999999998754 567888999
Q ss_pred eEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEE
Q 005034 392 IFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLIC 471 (718)
Q Consensus 392 vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~ 471 (718)
+|+|||++.++.
T Consensus 313 vi~Vga~~~~~~-------------------------------------------------------------------- 324 (671)
T d1r6va_ 313 VIQVAALDYYGG-------------------------------------------------------------------- 324 (671)
T ss_dssp CEEEEEEEEETT--------------------------------------------------------------------
T ss_pred eEEEEEecCCCC--------------------------------------------------------------------
Confidence 999999753211
Q ss_pred EeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceee
Q 005034 472 SYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII 551 (718)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 551 (718)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCC--------ccccCc
Q 005034 552 KFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS--------VEFQGE 623 (718)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~~ 623 (718)
...++.||++||.. ||+|||++|+|+++...... ....++
T Consensus 325 -------------------~~~~a~fS~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~ 372 (671)
T d1r6va_ 325 -------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGG 372 (671)
T ss_dssp -------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSC
T ss_pred -------------------cceeeeccCCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCCC
Confidence 01368899999986 99999999999986433211 123466
Q ss_pred cccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 005034 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (718)
Q Consensus 624 ~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 703 (718)
.|..++|||||||||||++|||+|++|+|++.|||++|++||++++..+. +..||||+||+
T Consensus 373 ~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~-------------------~~~~G~G~vna 433 (671)
T d1r6va_ 373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVKL 433 (671)
T ss_dssp CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCCH
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC-------------------CCCcccChhCH
Confidence 89999999999999999999999999999999999999999998865543 67899999999
Q ss_pred cccCCCCe
Q 005034 704 TASLDPGL 711 (718)
Q Consensus 704 ~~Al~~~l 711 (718)
.+||+..+
T Consensus 434 ~~Av~~~~ 441 (671)
T d1r6va_ 434 DAALQGPL 441 (671)
T ss_dssp HHHHHCCC
T ss_pred HHHhhCcC
Confidence 99997654
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.6e-49 Score=412.34 Aligned_cols=266 Identities=32% Similarity=0.430 Sum_probs=214.2
Q ss_pred CCCccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeee
Q 005034 165 TPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARH 244 (718)
Q Consensus 165 ~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (718)
..+.++++. +|.. +++|+||+|||||||||++||+|.++. +..++
T Consensus 14 ~l~~i~~~~-aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~~------------------------------~~~~~ 58 (280)
T d1dbia_ 14 GPQNTYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGKV------------------------------IKGYD 58 (280)
T ss_dssp TTGGGTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTTE------------------------------EEEEE
T ss_pred ChhhCCHHH-HHhc----cCCCCCeEEEEEccCcCCCChhhcCCe------------------------------eeccc
Confidence 334455444 7776 799999999999999999999999643 22333
Q ss_pred cchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHH
Q 005034 245 FAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVA 324 (718)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ 324 (718)
|.. ....+.|.++|||||||+|+|...+. ..+.||||+|+|+.+|+++.+..+...++++
T Consensus 59 ~~~------------~~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ 118 (280)
T d1dbia_ 59 FVD------------NDYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIAD 118 (280)
T ss_dssp TTT------------TBSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHH
T ss_pred ccC------------CCCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHH
Confidence 332 12445688899999999999875432 3568999999999999998867789999999
Q ss_pred HHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCce
Q 005034 325 AIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIY 404 (718)
Q Consensus 325 ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~ 404 (718)
||+|++++|++|||||||.... ......++..+.++|+++|+||||+|.....+|+..++||+|||++.+
T Consensus 119 ai~~a~~~g~~iin~S~g~~~~-------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~--- 188 (280)
T d1dbia_ 119 AIIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--- 188 (280)
T ss_dssp HHHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---
T ss_pred HHHHHHHcCCcEeecccccccc-------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC---
Confidence 9999999999999999997542 356677888999999999999999999888889999999999996432
Q ss_pred eeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchH
Q 005034 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (718)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 484 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccc
Q 005034 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (718)
Q Consensus 485 ~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 565 ~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
+.++.||++||.. |++|||.+|++.. .+..|..++|||||||+|||++||
T Consensus 189 -------~~~a~~S~~g~~~-------------d~~apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~Al 238 (280)
T d1dbia_ 189 -------DRLASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAAL 238 (280)
T ss_dssp -------SCBCTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCcCCcCCCCCcc-------------cccCCccceeccc----------cCcceeccCCccccchHHHHHHHH
Confidence 2367899999876 8999999999988 566899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 645 IKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
|+|. .+++.|||++|++||+++... +..+|+|+||+.+||+
T Consensus 239 l~~~--~~t~~~v~~~L~~tA~~~~~~---------------------~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 239 LASQ--GRNNIEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHT--TCCHHHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred HhCC--CcCHHHHHHHHHHhCcCCCCC---------------------CCcCCCCeEcHHHHcC
Confidence 9995 458999999999999876532 4579999999999986
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.7e-49 Score=437.01 Aligned_cols=372 Identities=19% Similarity=0.263 Sum_probs=236.7
Q ss_pred CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 005034 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (718)
Q Consensus 184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 263 (718)
.+|+||+|||||||||++||+|.++.. ..+++.. ..+...
T Consensus 19 ~~G~gv~VaviDtGid~~Hp~~~~~~~------------------------------~~~~~~~----------~~~~~~ 58 (435)
T d1v6ca_ 19 SQAGNRTICIIDSGYDRSHNDLNANNV------------------------------TGTNNSG----------TGNWYQ 58 (435)
T ss_dssp TTGGGCEEEEEESCCCTTSTTTTTSEE------------------------------EECCCTT----------SCCTTC
T ss_pred cCCCCcEEEEEcCCCCCCChhhccCee------------------------------eeeccCC----------CCCCCC
Confidence 589999999999999999999987543 1111111 112345
Q ss_pred CCCCCCCccccccccccCCCCCccccccccCccccccC--CceEEEEeecccCCCCCHHHHHHHHHHHHH-CCCCEEEEc
Q 005034 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP--RSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLS 340 (718)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp--~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~ViN~S 340 (718)
+.|++||||||||||+|+.++ .++.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|
T Consensus 59 ~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S 129 (435)
T d1v6ca_ 59 PGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMS 129 (435)
T ss_dssp CCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecc
Confidence 678899999999999997532 35689999 899999999987555677789999999996 599999999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEe--e
Q 005034 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTIS--G 418 (718)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~--~ 418 (718)
||.... ...+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+.....+.+++....+. |
T Consensus 130 ~g~~~~-------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG 202 (435)
T d1v6ca_ 130 LGGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG 202 (435)
T ss_dssp CCBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEEC
T ss_pred cCCCCC-------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecc
Confidence 998643 3567788889999999999999999999999999999999999999887766665555443332 1
Q ss_pred eccCCCC---CceEE-EEEcccccCCCC-cccCCccccccCCC-------------------CCCccCCcCceEEEEEee
Q 005034 419 VGLAPGT---DKMYT-LISALHALNNNT-TTTDDMYVGECQDS-------------------SNFNQDLVQGNLLICSYS 474 (718)
Q Consensus 419 ~~~~~~~---~~~~~-~~~~~~~~~~~~-~~~~~~~~~~c~~~-------------------~~~~~~~~~g~i~~~~~~ 474 (718)
..+.... ...+. ............ ..........|... ..+......+++.++.+.
T Consensus 203 ~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (435)
T d1v6ca_ 203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV 282 (435)
T ss_dssp SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred cceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence 1111000 11111 000000000000 00000000000000 001111222233332221
Q ss_pred cccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeec
Q 005034 475 IRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFG 554 (718)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 554 (718)
.... ...........+...+..+++
T Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 307 (435)
T d1v6ca_ 283 GNQG-SSYPEINSTKACKTAGAKGII------------------------------------------------------ 307 (435)
T ss_dssp SCSS-SSCTHHHHHHHHHHTTCSEEE------------------------------------------------------
T ss_pred CCcc-ccceeeeeceeecccCCcceE------------------------------------------------------
Confidence 1100 111111122222222222222
Q ss_pred eeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCC-------CCCccccCccccc
Q 005034 555 AVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLG-------TDSVEFQGESFAM 627 (718)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~-------~~~~~~~~~~y~~ 627 (718)
..+++.+|.... ...+..||||.+||..|.++..... .......++.|..
T Consensus 308 --------------------~~~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~ 364 (435)
T d1v6ca_ 308 --------------------VYSNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEY 364 (435)
T ss_dssp --------------------EECCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEE
T ss_pred --------------------EeccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeE
Confidence 223333333221 0124789999999998875532100 0000124557999
Q ss_pred cCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccC
Q 005034 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASL 707 (718)
Q Consensus 628 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al 707 (718)
|+|||||||||||++|||+|++|+|+++|||++|++||++++.. +++++||+|+||+.+|+
T Consensus 365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~~-------------------~~~~~~G~G~vn~~~A~ 425 (435)
T d1v6ca_ 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA-------------------GRDNQTGYGMINAVAAK 425 (435)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSS-------------------SCBTTTBTCBCCHHHHH
T ss_pred EccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCCC-------------------CCCCCcccceecHHHHH
Confidence 99999999999999999999999999999999999999987543 34788999999999997
Q ss_pred C
Q 005034 708 D 708 (718)
Q Consensus 708 ~ 708 (718)
.
T Consensus 426 ~ 426 (435)
T d1v6ca_ 426 A 426 (435)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.3e-48 Score=403.53 Aligned_cols=259 Identities=32% Similarity=0.487 Sum_probs=219.1
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+|+||||||+ +||+|.... .++|..
T Consensus 11 i~~~~-aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~~--------------------------------~~~~~~- 51 (269)
T d1gcia_ 11 VQAPA-AHNR----GLTGSGVKVAVLDTGIS-THPDLNIRG--------------------------------GASFVP- 51 (269)
T ss_dssp TTHHH-HHHT----TCSCTTCEEEEEESCCC-CCTTCCEEE--------------------------------EEECST-
T ss_pred hCcHH-HHhC----CCCCCCeEEEEECCCCC-CCcccCccc--------------------------------cccccC-
Confidence 44444 7876 79999999999999998 899996421 122222
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
....+.|.++|||||||||++..+. ....|+||+|+|+.+|++..+..+....+.++++|
T Consensus 52 -----------~~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~ 111 (269)
T d1gcia_ 52 -----------GEPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEW 111 (269)
T ss_dssp -----------TCCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHH
T ss_pred -----------CCCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHH
Confidence 1234567889999999999987643 34579999999999999988777888999999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeE
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~ 408 (718)
+..+++++||+|||.... ...+..++..+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 112 ~~~~~~~~in~s~g~~~~-------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 177 (269)
T d1gcia_ 112 AGNNGMHVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------- 177 (269)
T ss_dssp HHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------
T ss_pred HHhccccccccccccccc-------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-------
Confidence 999999999999997543 355677788899999999999999999888999999999999996532
Q ss_pred EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (718)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 488 (718)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (718)
Q Consensus 489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (718)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHh
Q 005034 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (718)
Q Consensus 569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 648 (718)
+.++.||++||.. ||+|||.++.++. .++.|..++|||||||+|||++|||+|+
T Consensus 178 ---~~~~~~S~~G~~~-------------di~Apg~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~ 231 (269)
T d1gcia_ 178 ---NNRASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQK 231 (269)
T ss_dssp ---SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcccccCCCCCc-------------eEEEeeecceecc----------CCCceEecCCcchHHHHHHHHHHHHHHH
Confidence 2357899999876 9999999999988 5678999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 649 ~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
+|+++++|||++|++||++++. +..||+|+||+.+|++
T Consensus 232 ~p~lt~~~i~~~L~~tA~~~g~----------------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 232 NPSWSNVQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp CTTCCHHHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred CCCCCHHHHHHHHHhhCccCCC----------------------CCCcccCeEcHHHhcC
Confidence 9999999999999999987643 3458999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.5e-48 Score=405.28 Aligned_cols=262 Identities=31% Similarity=0.470 Sum_probs=221.5
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecch
Q 005034 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (718)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (718)
.+++++ +|.. .+|+||+|+||||||+++||+|.++. +..++|.+
T Consensus 17 ~i~a~~-aw~~-----~tG~Gv~VaViDsGi~~~H~~~~~~~------------------------------~~~~~~~~ 60 (279)
T d1thma_ 17 KIQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGKV------------------------------VGGWDFVD 60 (279)
T ss_dssp HTTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTTE------------------------------EEEEETTT
T ss_pred hCCHHH-HHhc-----cCCCCcEEEEEcCCCCCCChhhcCCe------------------------------eccccccc
Confidence 344444 7876 38999999999999999999998642 33344433
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHH
Q 005034 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (718)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~ 327 (718)
+ ...+.|..+|||||||+|++...++ ..+.|+||+|+|+.+|++.....+...+++++|+
T Consensus 61 ~------------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~ 120 (279)
T d1thma_ 61 N------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGIT 120 (279)
T ss_dssp T------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHH
T ss_pred c------------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHH
Confidence 2 2456678899999999999875432 3568999999999999998867788999999999
Q ss_pred HHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 328 ~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
++.+.+++|+|+|||.... ...+.+++..+.++|+++|+|+||+|......++..+++|+|||++.+
T Consensus 121 ~~~~~~~~i~n~S~G~~~~-------~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------ 187 (279)
T d1thma_ 121 YAADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------ 187 (279)
T ss_dssp HHHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------
T ss_pred HHhhcCCceeccccCcccc-------chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC------
Confidence 9999999999999997542 356778888999999999999999999988889999999999996532
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 647 (718)
+.++.||++|++. ||+|||.+|+++. +++.|..++|||||||+|||++|||+|
T Consensus 188 ----~~~~~~S~~G~~~-------------di~Apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~ALl~~ 240 (279)
T d1thma_ 188 ----DNKSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLLAS 240 (279)
T ss_dssp ----SCBCTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHT
T ss_pred ----CCCccccCCCceE-------------EEeeeeecccccc----------CcccccccCCcchhhHHHHHHHHHHhc
Confidence 2368899999987 8999999999998 567899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 648 KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 648 ~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
++| ++.+||++|++||++++.. +..||+|+||+.+||+
T Consensus 241 ~~~--s~~~i~~~L~~tA~~~~g~---------------------~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 241 QGR--SASNIRAAIENTADKISGT---------------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTC--CHHHHHHHHHHTCBCCTTB---------------------TTTBSSEECCHHHHHH
T ss_pred CCc--CHHHHHHHHHhhCccCCCC---------------------CCcceeeeEcHHHhhC
Confidence 766 7999999999999986432 4579999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.3e-48 Score=404.74 Aligned_cols=260 Identities=31% Similarity=0.493 Sum_probs=215.1
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+||||||||+++||+|+.. ..++|...
T Consensus 11 i~~~~-~~~~----g~tG~gv~VaViDtGv~~~Hp~l~~~--------------------------------~~~~~~~~ 53 (274)
T d1r0re_ 11 IKADK-VQAQ----GFKGANVKVAVLDTGIQASHPDLNVV--------------------------------GGASFVAG 53 (274)
T ss_dssp TTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE--------------------------------EEEECSTT
T ss_pred cChHH-HHHc----CCCCCCeEEEEECCCCCCCChhhccc--------------------------------CCccccCC
Confidence 34433 6776 79999999999999999999999631 12223221
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
...+.|.++|||||||||++.... .++.|+||+|+|+.+++++.+..+..+++++++++
T Consensus 54 ------------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~ 112 (274)
T d1r0re_ 54 ------------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW 112 (274)
T ss_dssp ------------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred ------------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 234557889999999999987532 34679999999999999988666888999999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC----CCCCCCCCceEEEeeeccCCce
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIY 404 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~ 404 (718)
+.+++++|+|+|||.... .......+..+.++++++|+||||++... ..+|+..+++|+|||++.+
T Consensus 113 a~~~~~~i~n~S~~~~~~-------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 182 (274)
T d1r0re_ 113 ATTNGMDVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--- 182 (274)
T ss_dssp HHHTTCSEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhcCCceeccccccccc-------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---
Confidence 999999999999997543 34566777889999999999999998753 3456778999999986532
Q ss_pred eeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchH
Q 005034 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (718)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 484 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccc
Q 005034 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (718)
Q Consensus 485 ~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (718)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 565 ~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
+.++.||++||.+ ||+|||.+|+++. ..+.|..++|||||||+|||++||
T Consensus 183 -------~~~~~~s~~g~~~-------------di~APG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~~Al 232 (274)
T d1r0re_ 183 -------SNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAAL 232 (274)
T ss_dssp -------SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCcccccCCCCCE-------------EEEecCCCccccc----------CCCCeEeecCCchhHHHHHHHHHH
Confidence 2357889999765 9999999999998 566899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 645 IKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
|+|++|+|+++|||++|++||++++. +..+|+|+||+.+|||
T Consensus 233 l~~~~p~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 233 ILSKHPNLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHSTTCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHhhCccCCC----------------------CCceEcCeecHHHhcC
Confidence 99999999999999999999987632 3579999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.3e-48 Score=404.22 Aligned_cols=262 Identities=29% Similarity=0.445 Sum_probs=216.4
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+||||||||+++||+|+.... ++|...
T Consensus 11 i~a~~-aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~~~--------------------------------~~~~~~ 53 (281)
T d1to2e_ 11 IKAPA-LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVAGG--------------------------------ASMVPS 53 (281)
T ss_dssp TTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEEEE--------------------------------EECCTT
T ss_pred hCcHH-HHHC----CCCCCCeEEEEECCCCCCCChhhhhcCC--------------------------------ccccCC
Confidence 44444 7876 7999999999999999999999974321 111111
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
+.....+..+|||||||||+|..+. ....||||+|+|+.+|++..+..+...+++++|+|
T Consensus 54 -----------~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~ 113 (281)
T d1to2e_ 54 -----------ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEW 113 (281)
T ss_dssp -----------CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred -----------CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 1112234568999999999997532 24579999999999999987666888999999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC----CCCCCCCCceEEEeeeccCCce
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIY 404 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~ 404 (718)
+++.+++|+|+|||... ....++.+++.+.++|+++|+||||++... ..+|+..+++|+||+++.+
T Consensus 114 a~~~~~~v~n~S~g~~~-------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 183 (281)
T d1to2e_ 114 AIANNMDVINMSLGGPS-------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--- 183 (281)
T ss_dssp HHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhccccccccccCCCc-------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC---
Confidence 99999999999999753 346788889999999999999999998753 3457778999999986432
Q ss_pred eeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchH
Q 005034 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (718)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 484 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccc
Q 005034 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (718)
Q Consensus 485 ~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 565 ~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
+.++.||++||.. |++|||.+|+++. .++.|..++|||||||+|||++||
T Consensus 184 -------~~~~~~S~~G~~~-------------d~~apG~~i~s~~----------~~~~~~~~~GTS~Aap~vaG~~Al 233 (281)
T d1to2e_ 184 -------NQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAAL 233 (281)
T ss_dssp -------SCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHH
T ss_pred -------CCCCcccCCCCCc-------------cccCCCCCceeec----------CCCeeEcccCcchhHHHHHHHHHH
Confidence 2367899999987 8999999999988 567899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 645 IKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
|+|++|+|+++|||++|++||+++.. +..||+|+||+.+||+.
T Consensus 234 l~~~~p~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 234 ILSKHPNWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHSTTCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred HHHHCCCCCHHHHHHHHHhhCccCCC----------------------CCCcccCcccHHHHHhh
Confidence 99999999999999999999997642 34699999999999984
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=4.6e-43 Score=369.17 Aligned_cols=289 Identities=29% Similarity=0.423 Sum_probs=216.7
Q ss_pred CCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhh
Q 005034 170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249 (718)
Q Consensus 170 ~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (718)
+++. +|.. +++|+||+|+|||||||++||+|.++.. ..++|...
T Consensus 14 ~~~~-aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~~~------------------------------~~~~~~~~- 57 (309)
T d2ixta1 14 YNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNNVE------------------------------QCKDFTGA- 57 (309)
T ss_dssp HTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTTEE------------------------------EEEESSSS-
T ss_pred CChh-hhcc----CCCCCCeEEEEEccCCCCCChhHhcccc------------------------------ccccccCC-
Confidence 3344 6655 7999999999999999999999997532 22233221
Q ss_pred hhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHH
Q 005034 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA 329 (718)
Q Consensus 250 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a 329 (718)
.........|..+|||||||||+|..... ..++.||||+|+|+.++++.....+..++++.+++++
T Consensus 58 -------~~~~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 58 -------TTPINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp -------SSCEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred -------CCCCCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 00111344577899999999999875321 2356899999999999999887778889999999998
Q ss_pred HHC-----CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--CCCCCCCceEEEeeeccCC
Q 005034 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDR 402 (718)
Q Consensus 330 ~~~-----g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~ 402 (718)
++. ...|+|+||+... ....+..++..+.++|+++|+||||++.... .+|+..+++++|++.+...
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~-------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~ 196 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSA-------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ 196 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSS-------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE
T ss_pred ccccccccccccccccccccc-------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccc
Confidence 875 3468999999753 2356677888899999999999999987643 4567788999998865321
Q ss_pred ceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcc
Q 005034 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS 482 (718)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 482 (718)
......
T Consensus 197 ~~~~~~-------------------------------------------------------------------------- 202 (309)
T d2ixta1 197 QNGTYR-------------------------------------------------------------------------- 202 (309)
T ss_dssp ETTEEE--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 100000
Q ss_pred hHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecc
Q 005034 483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562 (718)
Q Consensus 483 ~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (718)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHH
Q 005034 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642 (718)
Q Consensus 563 ~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 642 (718)
.........++++|+... ...||||+|||.+|+++. .+..|..++|||||||+|||++
T Consensus 203 -----~~~~~~~~~~~~~~~~~~-------~~~~vdi~apG~~~~s~~----------~~~~~~~~sGTS~AaP~VaG~~ 260 (309)
T d2ixta1 203 -----VADYSSRGYISTAGDYVI-------QEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLA 260 (309)
T ss_dssp -----ECTTSCCCCTTTTTSSSC-------CTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHH
T ss_pred -----cccccccccccccccccc-------CCCcceeecCCCceeeec----------CCCcceeecCccchhHHHHHHH
Confidence 000012344577777664 478999999999999998 5668999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 005034 643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (718)
Q Consensus 643 ALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 703 (718)
|||+|++|+|++.|||++|++||++++..+. .......+..+|+|++|+
T Consensus 261 Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~------------~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 261 AKIWAENPSLSNTQLRSNLQERAKSVDIKGG------------YGAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS------------TTCCSSSBTTTBTCBCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCCCCC------------cCCccCCCcccCCCEecC
Confidence 9999999999999999999999998765432 112344577889999885
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=5.3e-43 Score=363.14 Aligned_cols=237 Identities=31% Similarity=0.467 Sum_probs=195.3
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
..+|+||+|||||||||++||+|.++.. ....+ ..
T Consensus 27 ~~tG~Gv~VaViDsGid~~Hpdf~g~~~------------------------------~~~~~---------------~~ 61 (279)
T d2pwaa1 27 ESAGQGSCVYVIDTGIEASHPEFEGRAQ------------------------------MVKTY---------------YY 61 (279)
T ss_dssp TTTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEES---------------SS
T ss_pred CCCCCCeEEEEECcCCCCCChhhcCCce------------------------------eccCC---------------CC
Confidence 3699999999999999999999997533 00000 12
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC-------CCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-------GVD 335 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-------g~~ 335 (718)
.+.|.++|||||||||+|+. .|+||+|+|+.+|++........+++..+++++... ++.
T Consensus 62 ~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (279)
T d2pwaa1 62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccc
Confidence 33467899999999999863 599999999999999886778889999999998875 345
Q ss_pred EEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC-CCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 336 ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
|+|+|||.. +.+.+..++..+.++|+++|+||||++.+... +|+..+++|+|||++.+
T Consensus 128 i~n~s~g~~--------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~------------- 186 (279)
T d2pwaa1 128 VASLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------- 186 (279)
T ss_dssp EEEECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------
T ss_pred ceeccCCCc--------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec-------------
Confidence 999999964 34678888889999999999999999876533 57778999999996432
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+.+
T Consensus 187 -----------------------------------------------------------------------------g~~ 189 (279)
T d2pwaa1 187 -----------------------------------------------------------------------------DRR 189 (279)
T ss_dssp -----------------------------------------------------------------------------SBB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 236
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 654 (718)
+.||++||+. ||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|.+++
T Consensus 190 ~~~S~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~ 246 (279)
T d2pwaa1 190 SSFSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAA 246 (279)
T ss_dssp CTTCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccccCCCCcc-------------ccccccccccccc----------cCCcccCCCcchhHHHHHHHHHHHHHHhCCCChH
Confidence 7899999986 8999999999998 5678999999999999999999999999999998
Q ss_pred HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 005034 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (718)
Q Consensus 655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 703 (718)
+++|. |++||++.. ....|+|++|+
T Consensus 247 ~~~~~-ll~ta~~~~-----------------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 247 SACRY-IADTANKGD-----------------------LSNIPFGTVNL 271 (279)
T ss_dssp THHHH-HHHHSEESC-----------------------CBSCCTTSCCE
T ss_pred HHHHH-HHHhCcCCC-----------------------CCCCCCCChhh
Confidence 88775 677887532 23479999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.1e-41 Score=357.73 Aligned_cols=289 Identities=26% Similarity=0.373 Sum_probs=216.6
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
|+||+||+||||||||+++||+|..... ...++...+++.. ..
T Consensus 18 G~tG~Gv~VaIiDsGi~~~h~~~~~~~~------------------------~~~~~~~~~~~~~-------------~~ 60 (318)
T d1wmda2 18 GLYGQGQIVAVADTGLDTGRNDSSMHEA------------------------FRGKITALYALGR-------------TN 60 (318)
T ss_dssp CCSCTTCEEEEEESCCTTSCSSTTSCTT------------------------TTTCEEEEEETTT-------------TT
T ss_pred CccccCeEEEEEcCCcCCCCcccccCcc------------------------cCCcEEeecCCCC-------------CC
Confidence 7999999999999999999999985422 1123444444332 13
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC--CCHHHHHHHHHHHHHCCCCEEEEc
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLS 340 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~ViN~S 340 (718)
.+.|..+|||||||||+|+.. ...||||+|+|+.+|+++.... .....+..+++++...+++|+|+|
T Consensus 61 ~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 129 (318)
T d1wmda2 61 NANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS 129 (318)
T ss_dssp CCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecc
Confidence 456788999999999998742 2469999999999999886443 344557889999999999999999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC--CCCCCceEEEeeeccCCceeeeEEeCCCceEee
Q 005034 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418 (718)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 418 (718)
||...... +......+...+.++++++|+|+||.+.+.... ++..+++|++.+.........
T Consensus 130 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 193 (318)
T d1wmda2 130 WGAAVNGA----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------ 193 (318)
T ss_dssp CCBCCTTC----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC------------
T ss_pred cccccccc----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc------------
Confidence 99765432 345666777788899999999999999876544 345678888877543211000
Q ss_pred eccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcE
Q 005034 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAG 498 (718)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 498 (718)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccc
Q 005034 499 IVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578 (718)
Q Consensus 499 vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fS 578 (718)
........+..+|
T Consensus 194 -------------------------------------------------------------------~~~~~~~~~~~~s 206 (318)
T d1wmda2 194 -------------------------------------------------------------------SYADNINHVAQFS 206 (318)
T ss_dssp -------------------------------------------------------------------GGGSCTTSBCTTS
T ss_pred -------------------------------------------------------------------ccccccccccccc
Confidence 0001122467789
Q ss_pred cCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCc--cccCccccccCchhhhhHHHHHHHHHHHHhCC-----C
Q 005034 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSV--EFQGESFAMMSGTSMAAPHIAGLAALIKQKFP-----S 651 (718)
Q Consensus 579 s~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-----~ 651 (718)
++||... ...|||++|||.+|+++......... ......|..++|||||||+|||++|||+|++| .
T Consensus 207 ~~G~~~~-------~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~ 279 (318)
T d1wmda2 207 SRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGIT 279 (318)
T ss_dssp CCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred ccCCCcC-------CCcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCC
Confidence 9999876 47899999999999998765433211 11234677899999999999999999999765 5
Q ss_pred CCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 652 FSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 652 ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
+++.+||++|++||++++.. .++..||||+||+.+||+
T Consensus 280 ~~~~~i~~~l~~tA~~~~~~-------------------~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 280 PKPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp CCHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHT
T ss_pred CCHHHHHHHHHhhCccCCCC-------------------CCCCCeeeceecHHHHhC
Confidence 78999999999999977543 336789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-39 Score=346.76 Aligned_cols=290 Identities=20% Similarity=0.246 Sum_probs=192.9
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+||||||||+++||+|.++.. ....|+ +...
T Consensus 24 in~~~-aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~-----~~~~~~-----------------------~~~~ 70 (334)
T d1p8ja2 24 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD-----PGASFD-----------------------VNDQ 70 (334)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC-----GGGCEE-----------------------TTTT
T ss_pred CCHHH-HHhc----CCCCCCeEEEEEccCCCCCChhHhhccc-----cCCCcc-----------------------ccCC
Confidence 34334 7776 7999999999999999999999997643 000110 0000
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
...........+..+|||||||||+|..+++ ....|+||+++++.+++++. ...+.+.++.+
T Consensus 71 ------~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~----~~~~~~~~~~~ 132 (334)
T d1p8ja2 71 ------DPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSL 132 (334)
T ss_dssp ------BSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHH
T ss_pred ------CCccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhccc----cccchHHHHHH
Confidence 0011122334578899999999999886543 24579999999999998764 22355667777
Q ss_pred HHH-CCCCEEEEcCCCCCCCCCCCc-----cccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCC----CCCCceEEEeee
Q 005034 329 AAQ-DGVDIISLSITPNRRPPGIAT-----FFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAA 398 (718)
Q Consensus 329 a~~-~g~~ViN~S~G~~~~~~~~~~-----~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~----~~~~~vitVgA~ 398 (718)
+++ ++++++|+|||.......... ....+..++..+..+|+++|+||||++....... ...+.+++|+++
T Consensus 133 ~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (334)
T d1p8ja2 133 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 212 (334)
T ss_dssp TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred HhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccc
Confidence 665 589999999997543211111 1223344556667899999999999877543322 224556667665
Q ss_pred ccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccc
Q 005034 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478 (718)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~ 478 (718)
+.++
T Consensus 213 ~~~g---------------------------------------------------------------------------- 216 (334)
T d1p8ja2 213 TQFG---------------------------------------------------------------------------- 216 (334)
T ss_dssp CTTS----------------------------------------------------------------------------
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 4322
Q ss_pred cCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEE
Q 005034 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC 558 (718)
Q Consensus 479 ~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (334)
T d1p8ja2 217 -------------------------------------------------------------------------------- 216 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCc-----eeecccCCCCCCccccCccccccCchhh
Q 005034 559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS-----IWAAWSSLGTDSVEFQGESFAMMSGTSM 633 (718)
Q Consensus 559 ~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~-----I~Sa~~~~~~~~~~~~~~~y~~~sGTSm 633 (718)
..+.||+.|+.... +..+||.. +.+.. .+..|..++||||
T Consensus 217 --------------~~~~~s~~~~~~~~-----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~sGTS~ 261 (334)
T d1p8ja2 217 --------------NVPWYSEACSSTLA-----------TTYSSGNQNEKQIVTTDL----------RQKCTESHTGTSA 261 (334)
T ss_dssp --------------CCCTTCCBCTTCCE-----------EEECCCSTTSCCEEEEET----------TTEEEEEECSHHH
T ss_pred --------------ceeeecccCCcccc-----------cccccccccccccccccc----------CCccccCCCCccc
Confidence 23344444443321 33334322 22322 4557889999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 634 AAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 634 AaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
|||+|||++|||+|++|+|++.|||++|++||++........... ......+..||+|+||+.+||+
T Consensus 262 AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~--------~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 262 SAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccccc--------CCCcccCCCCcceEeCHHHHHH
Confidence 999999999999999999999999999999999875543211111 1222345689999999999986
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-39 Score=342.86 Aligned_cols=293 Identities=21% Similarity=0.218 Sum_probs=204.5
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
++++. +|.. +++|+||+|||||||||++||+|.++.... ..++|.+.
T Consensus 33 in~~~-aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~~~~----------------------------~~~~~~~~ 79 (339)
T d2id4a2 33 INVLD-LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCAE----------------------------GSWDFNDN 79 (339)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCGG----------------------------GCEETTTT
T ss_pred cCHHH-HHhc----CCCCCCcEEEEECcCcCCCChHHhcCcccc----------------------------cccccccC
Confidence 44444 7876 799999999999999999999999864400 01122211
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
........+..+|||||||+|+|..+.+ ..+.||||+|+|+.+++... .....++..++.+
T Consensus 80 ---------~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~ 140 (339)
T d2id4a2 80 ---------TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIY 140 (339)
T ss_dssp ---------BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTT
T ss_pred ---------CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHH
Confidence 1112334567899999999999875433 34579999999999998753 4667778888887
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCcc-----ccHHHHHHHHHHHCCCEEEEecCCCCCCCCC--CCC--CCCceEEEeeec
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATF-----FNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSS--FSPWIFTVGAAS 399 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~-----~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~--~~~--~~~~vitVgA~~ 399 (718)
+++. .+|+|+|||........... ......++..+..+|+++|+||||++..... ++. ..+.+++|++++
T Consensus 141 ~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (339)
T d2id4a2 141 GLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID 219 (339)
T ss_dssp TTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred HHhh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc
Confidence 7665 58999999965432111111 1123345556677999999999998865432 222 234556665543
Q ss_pred cCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeeccccc
Q 005034 400 HDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVL 479 (718)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~ 479 (718)
..
T Consensus 220 ~~------------------------------------------------------------------------------ 221 (339)
T d2id4a2 220 HK------------------------------------------------------------------------------ 221 (339)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred CcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEE
Q 005034 480 GLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACI 559 (718)
Q Consensus 480 ~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (718)
T Consensus 222 -------------------------------------------------------------------------------- 221 (339)
T d2id4a2 222 -------------------------------------------------------------------------------- 221 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHH
Q 005034 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639 (718)
Q Consensus 560 ~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 639 (718)
+..+.||++|+.. ...++..+||..+.++.. .++.|..++||||||||||
T Consensus 222 ------------g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~va 271 (339)
T d2id4a2 222 ------------DLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAA 271 (339)
T ss_dssp ------------SCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHH
T ss_pred ------------ccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHHHH
Confidence 2235556666654 345578888998887763 4557889999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 640 G~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
|++|||+|++|+|++.|||.+|+.||++++....+... .....+..+..||||+||+.+||+.
T Consensus 272 G~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~-------~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 272 GVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWR-------DSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCE-------ECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccc-------ccCCCCCcCCCccchhhCHHHHHHH
Confidence 99999999999999999999999999987654321110 0112334567899999999999874
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.97 E-value=3.8e-32 Score=290.72 Aligned_cols=165 Identities=24% Similarity=0.313 Sum_probs=112.4
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||||||++||+|.+... . +.......
T Consensus 20 G~tG~Gv~VaViDtGvd~~H~dl~~~~~-----------~--------------------------------~~~~~~~~ 56 (357)
T d1t1ga_ 20 GLDGQGQCIAIIALGGGYDETSLAQYFA-----------S--------------------------------LGVSAPQV 56 (357)
T ss_dssp TCCCTTCEEEEEESSCCCCHHHHHHHHH-----------H--------------------------------TTCCCCCE
T ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHHHh-----------h--------------------------------cCCCCCCC
Confidence 7999999999999999999999986321 0 00000011
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---CCCCEEEE
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---DGVDIISL 339 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~---~g~~ViN~ 339 (718)
.+.+..+|+|||+|++++...... .....+.||||+|+|+.+++... ...+..++++++. ++++|||+
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~Vin~ 127 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT-----DAGFLNAITTAVHDPTHKPSIVSI 127 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS-----HHHHHHHHHHHHHCTTTCCSEEEE
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC-----CCchHHHHHHHHHhhhcCCeEEec
Confidence 223567899999998776432110 01124579999999999998754 2345556666654 58999999
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--------CCCCCCCceEEEeeecc
Q 005034 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--------SMSSFSPWIFTVGAASH 400 (718)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--------~~~~~~~~vitVgA~~~ 400 (718)
|||....... ..+...++.++..+..+|+++|+|+||+|.... ..+...+++++|++...
T Consensus 128 S~G~~~~~~~-~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 195 (357)
T d1t1ga_ 128 SWGGPEDSWA-PASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 195 (357)
T ss_dssp CCCEEGGGSC-HHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred ccccCcCccc-cchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecc
Confidence 9997532211 223456777778888999999999999986432 23345688999988653
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=8.5e-30 Score=273.96 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=98.8
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-CCCCEEEEcCCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLSITPN 344 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~ViN~S~G~~ 344 (718)
+..+||||+++++.+..+. ..+.||||+|+|+.++++.+.......+++++|+|+++ ++++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4568999999998765321 24579999999999999988666888899999999986 5799999999974
Q ss_pred CCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-------------CCCCCCCceEEEeeecc
Q 005034 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-------------SMSSFSPWIFTVGAASH 400 (718)
Q Consensus 345 ~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-------------~~~~~~~~vitVgA~~~ 400 (718)
..........+.++++++.+..+|++||+||||+|.... .+|+..+++++|+++..
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 322111335577888999999999999999999986432 23456789999998753
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=1.1e-06 Score=68.15 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
..+.++.+.|. ++|||+++++++.++.|+++|+|.+||+|..++.
T Consensus 26 ~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 26 QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 45778999997 7999999999999999999999999999988764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.97 E-value=6.9e-06 Score=63.68 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=31.9
Q ss_pred ceEEEEec-ceeeeEEEEeCHHHHHHHhcCCC--eEEEEeCc
Q 005034 118 YLKLYSYH-YLINGFSVFVTPQQAEKLSRRRE--VANVVSDF 156 (718)
Q Consensus 118 ~~~~~~~~-~~~ng~~v~~~~~~~~~L~~~p~--V~~v~~~~ 156 (718)
..+.+.|. ..|+||+++++++.++.|+++|. |++||++.
T Consensus 30 ~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 30 GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 34445554 47999999999999999998655 99999985
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.23 Score=44.74 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=34.7
Q ss_pred CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+++|||+++.+ +.+.+.+|+.+|+..||.|+|+|.+..
T Consensus 59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 468999999998 567889999999999999999998765
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.29 E-value=0.47 Score=44.03 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=34.9
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
..+++|+|+|+.+ +...+.+|+.+|+..||.|+|+|.++.
T Consensus 76 gi~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP~ 115 (233)
T d3bi1a2 76 KINCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDPA 115 (233)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCHH
T ss_pred CCcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecChH
Confidence 3468999999988 567789999999999999999999764
|