Citrus Sinensis ID: 005035

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccEEEEEcHHHHHHHHHHcHHHHcHHHHccHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHccccEEEcccccccEEccccccccccccccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHccccccccccEEEEEccEEEccccHHHHcccccccEEEEEccccccccccccccccccHHHHccccccccccccccEEEEHHHHHHHccHHHHHHHHHHccccccccccccccHHHcccccEEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHcccccHHHHHHccccc

cHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHccccccHHccccccEEEEEEcccEEEEEEEEHHHHHHcHHHHccccccccHHHHccccccccccccccHHHHHHHHHHHHccccEEEEEEHccEEEEEEEcccEEEccccccccEEEEEEEccccHHHHHHHHHcccccccEEEEEcHHHccHccccccHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEccHHHHcccccccEcccHHHHHHHcccHccccccccHHHHHccccccHHHHcccEEEEHHHHHHccHHHHHHHHHHHccccEEEEccccccHEEEEccccccccccHcEccccccccccHHHHccccEEEEccccccEEEEcccccccccccccccccHHHHHccccc

MKTRNLVVGMLCATVLAPILIFtstfkdsypsssesgefledltaftvggdarhlnllpqessttlslkqpiLVISdkiaqhsahsqsqsqgswehKSARVLSAttngldqsktdnpirqvtdlTKTQINKHADQEQIKASDNHISAHHSqildtkhqqessltygvlekkeptkinnekqteqttppdfrVRQLKDQLIKAKVYlslpamrnnANFVRELRLRIKEVQRAlgdatkdsdlprIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTaktlpkglhclplrltteyytlnssqrhfpnqekledprlfhyaLFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLsfqrrpllsvdmsnspccieplqhpsnhvfHIVTDRLNYAAMRMWFlanppgratvQVQNIEEFtwlnssyspvlkqlnSQSMIDYYFRAhransdsnlkfrnpkyLSILNHLRFYlpevfprlnkvlfldddvVVQKDLSglwsidlkgkvngavetcgetfhrfdrylnfsnplisknfdpracgwaygmnifdldewrrQNITDVYHTWQkmnhdrqlwklgtlppglitfwkrtypldrfwhvlglgynpsvnqrdIERAAVIHYngnmkpwleinipkyrnywtkhvdydqLYLRECNINP

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAhsqsqsqgsweHKSARVLSATtngldqsktdnpirqvtDLTKTQINKHADQEQIKASDNHISAHHSqildtkhqqeSSLTYgvlekkeptkinnekqteqttppdfrvRQLKDQLIKAkvylslpamrnnANFVRELRLRIKEVQralgdatkdsdlpriANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLtaktlpkglhclPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRansdsnlkfRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSglwsidlkgkvNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIaqhsahsqsqsqGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

****NLVVGMLCATVLAPILIFTSTFKD**********FLEDLTAFTVGGDARHLNLL*********LKQPILVI*********************************************************************************************************************RQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA******************************IQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSS*********LEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECN***

**TRNLVVGMLCATVLAPILIFTSTFKD**************LTAFTVGGDARHLNL************************************************************************************************************************************FRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIK***************************QSLAKGKQIQDDCAAVVKKLRAMLHS*********KQTLFLTQLTAKTLPKGLHCLPLRLTTE*********************LFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYAL******************SFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCC***LQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNI**

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKI*******************ARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKIN********TPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPI*V********************************************RQ*****************************************************************TPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFxxxxxxxxxxxxxxxxxxxxxSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVxxxxxxxxxxxxxxxxxxxxxTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		717	2.2.26 [Sep-21-2011]
Q93ZX7		616	Probable galacturonosyltr	yes	no	0.351	0.409	0.862	1e-161
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.661	0.704	0.447	1e-131
Q0WQD2		680	Probable galacturonosyltr	no	no	0.394	0.416	0.662	1e-121
Q9LSG3		559	Galacturonosyltransferase	no	no	0.401	0.515	0.587	1e-108
Q9FWA4		561	Probable galacturonosyltr	no	no	0.394	0.504	0.616	1e-103
Q949Q1		537	Probable galacturonosyltr	no	no	0.389	0.519	0.592	1e-102
Q9SKT6		536	Probable galacturonosyltr	no	no	0.390	0.522	0.597	1e-96
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.358	0.486	0.583	2e-96
Q0WV13		533	Probable galacturonosyltr	no	no	0.390	0.525	0.503	4e-83
Q8GWT1		532	Probable galacturonosyltr	no	no	0.390	0.526	0.489	6e-82

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function desciption

 Score =  567 bits (1462), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 245/284 (86%), Positives = 271/284 (95%)

Query: 434 QHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQS 493
           +HP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLNSSYSPVLKQL+S+S
Sbjct: 333 KHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLNSSYSPVLKQLSSRS 392

Query: 494 MIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSG 553
           MIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVLFLDDD+VVQKDLSG
Sbjct: 393 MIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDLSG 452

Query: 554 LWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRR 613
           LWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGWAYGMN+FDLDEW+R
Sbjct: 453 LWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKR 512

Query: 614 QNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIE 673
           QNIT+VYH WQ +N DR+LWKLGTLPPGLITFW+RTYPLDR WH+LGLGYNPSVNQRDIE
Sbjct: 513 QNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIE 572

Query: 674 RAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP 717
           RAAVIHYNGN+KPWLEI IP+YR +W+KHVDY+ +YLRECNINP
Sbjct: 573 RAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNINP 616

May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9FWA4\|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q0WV13\|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1	Back alignment and function description

>sp\|Q8GWT1\|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		717
10177914		615	unnamed protein product [Arabidopsis tha	0.854	0.996	0.513	0.0
449523730		649	PREDICTED: probable galacturonosyltransf	0.880	0.972	0.495	0.0
297829924		601	hypothetical protein ARALYDRAFT_478777 [	0.835	0.996	0.498	0.0
449443508		646	PREDICTED: LOW QUALITY PROTEIN: probable	0.863	0.958	0.459	1e-163
18422837		616	alpha-1,4-galacturonosyltransferase [Ara	0.351	0.409	0.862	1e-159
224124762		665	glycosyltransferase, CAZy family GT8 [Po	0.369	0.398	0.880	1e-158
255568510		647	Glycosyltransferase QUASIMODO1, putative	0.366	0.406	0.875	1e-157
356555791		663	PREDICTED: probable galacturonosyltransf	0.350	0.378	0.861	1e-157
359496846		1286	PREDICTED: uncharacterized protein LOC10	0.370	0.206	0.858	1e-156
296080851		638	unnamed protein product [Vitis vinifera]	0.370	0.416	0.858	1e-156

>gi\|10177914\|dbj\|BAB11325.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/718 (51%), Positives = 447/718 (62%), Gaps = 105/718 (14%)

Query: 1   MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQ 60
           +K RNLV+  +  TV+A IL++T     S+ +     +FLED+TA T   D   LNLLP+
Sbjct: 2   VKLRNLVLFFMLLTVVAHILLYTDP-AASFKTPFSKRDFLEDVTALTFNSDENRLNLLPR 60

Query: 61  ESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQ 120
           ES   L       V SDK ++             +  SARVLSAT +    S TD  I+Q
Sbjct: 61  ESPAVLRGGLVGAVYSDKNSRR-----------LDQLSARVLSATDDDT-HSHTDISIKQ 108

Query: 121 VTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEK 180
           VT                 ASD+HI+  +  +  T+   E      V E+ EP     +K
Sbjct: 109 VT--------------HDAASDSHINRENMHVQLTQQTSEK-----VDEQPEPNAFGAKK 149

Query: 181 QTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSD 240
            T     PD +VR LKDQLI+AKVYLSLP+ + NA+FVRELRLRI               
Sbjct: 150 DTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHFVRELRLRI--------------- 194

Query: 241 LPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAK 300
                    K ++++LA   +  D     ++KL+AM     EQ     KQ     Q    
Sbjct: 195 ---------KEVQRALADASKDSDLPKTAIEKLKAM-----EQTLAKGKQI----QDDCS 236

Query: 301 TLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLED-PRLFHYALFSDNVLAAAVVVNSTV 359
           T+ K L  + L    E   ++  Q  F  Q   +  P+  H            + +  T 
Sbjct: 237 TVVKKLRAM-LHSADEQLRVHKKQTMFLTQLTAKTIPKGLH-----------CLPLRLTT 284

Query: 360 THAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSFVFLERWFRASINLLSFQRRPLL 419
            +  +  S  ++             N  KL  + LY +               F    L 
Sbjct: 285 DYYALNSSEQQFP------------NQEKLEDTQLYHYAL-------------FSDNVLA 319

Query: 420 SVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLN 479
           +  + NS   I   +HP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLN
Sbjct: 320 TSVVVNS--TITNAKHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLN 377

Query: 480 SSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVL 539
           SSYSPVLKQL+S+SMIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVL
Sbjct: 378 SSYSPVLKQLSSRSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVL 437

Query: 540 FLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGW 599
           FLDDD+VVQKDLSGLWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGW
Sbjct: 438 FLDDDIVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGW 497

Query: 600 AYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVL 659
           AYGMN+FDLDEW+RQNIT+VYH WQ +N DR+LWKLGTLPPGLITFW+RTYPLDR WH+L
Sbjct: 498 AYGMNVFDLDEWKRQNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHIL 557

Query: 660 GLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP 717
           GLGYNPSVNQRDIERAAVIHYNGN+KPWLEI IP+YR +W+KHVDY+ +YLRECNINP
Sbjct: 558 GLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNINP 615

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449523730\|ref\|XP_004168876.1\| PREDICTED: probable galacturonosyltransferase 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297829924\|ref\|XP_002882844.1\| hypothetical protein ARALYDRAFT_478777 [Arabidopsis lyrata subsp. lyrata] gi\|297328684\|gb\|EFH59103.1\| hypothetical protein ARALYDRAFT_478777 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449443508\|ref\|XP_004139519.1\| PREDICTED: LOW QUALITY PROTEIN: probable galacturonosyltransferase 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18422837|ref|NP_568688.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75163841|sp|Q93ZX7.1|GAUT4_ARATH RecName: Full=Probable galacturonosyltransferase 4; AltName: Full=Like glycosyl transferase 3 gi|15810327|gb|AAL07051.1| unknown protein [Arabidopsis thaliana] gi|20259235|gb|AAM14333.1| unknown protein [Arabidopsis thaliana] gi|332008188|gb|AED95571.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224124762\|ref\|XP_002329942.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222871964\|gb\|EEF09095.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255568510\|ref\|XP_002525229.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi\|223535526\|gb\|EEF37195.1\| Glycosyltransferase QUASIMODO1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356555791\|ref\|XP_003546213.1\| PREDICTED: probable galacturonosyltransferase 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|359496846\|ref\|XP_002272372.2\| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296080851\|emb\|CBI18781.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		717
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.396	0.461	0.862	1e-239
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.391	0.417	0.687	5.5e-169
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.394	0.416	0.662	2.9e-148
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.182	0.248	0.666	2.8e-131
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.283	0.332	0.529	7.3e-123
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.391	0.500	0.621	1.9e-121
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.397	0.509	0.597	1.9e-121
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.390	0.522	0.597	5.1e-121
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.387	0.517	0.594	6.7e-119
TAIR\|locus:2102082		533	GAUT13 "galacturonosyltransfer	0.398	0.536	0.496	1.3e-94

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1428 (507.7 bits), Expect = 1.0e-239, Sum P(3) = 1.0e-239
 Identities = 245/284 (86%), Positives = 271/284 (95%)

Query:   434 QHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQS 493
             +HP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLNSSYSPVLKQL+S+S
Sbjct:   333 KHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLNSSYSPVLKQLSSRS 392

Query:   494 MIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSG 553
             MIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVLFLDDD+VVQKDLSG
Sbjct:   393 MIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDLSG 452

Query:   554 LWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRR 613
             LWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGWAYGMN+FDLDEW+R
Sbjct:   453 LWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKR 512

Query:   614 QNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIE 673
             QNIT+VYH WQ +N DR+LWKLGTLPPGLITFW+RTYPLDR WH+LGLGYNPSVNQRDIE
Sbjct:   513 QNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIE 572

Query:   674 RAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP 717
             RAAVIHYNGN+KPWLEI IP+YR +W+KHVDY+ +YLRECNINP
Sbjct:   573 RAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNINP 616

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZX7	GAUT4_ARATH	2, ., 4, ., 1, ., -	0.8626	0.3514	0.4090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		717
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	0.0
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	1e-164
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-163
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-159
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	1e-154
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	1e-125
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	1e-110
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	1e-108
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	2e-95
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	3e-88
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	4e-84
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	4e-80
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	5e-67
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	2e-48
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-46
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	3e-28
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	1e-20
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	8e-20
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	7e-17
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	2e-16
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	2e-14
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	3e-14
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	5e-10
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	2e-04

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

 Score =  660 bits (1703), Expect = 0.0
 Identities = 259/284 (91%), Positives = 277/284 (97%)

Query: 434 QHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQS 493
           +HPS HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQNIEEFTWLNSSYSPVLKQL SQS
Sbjct: 356 KHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQS 415

Query: 494 MIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSG 553
           MIDYYFRAHRANSDSNLK+RNPKYLSILNHLRFYLPE+FP+LNKVLFLDDD+VVQKDL+G
Sbjct: 416 MIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTG 475

Query: 554 LWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRR 613
           LWSIDLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDP ACGWAYGMN+FDLDEW+R
Sbjct: 476 LWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKR 535

Query: 614 QNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIE 673
           QNIT+VYH+WQK+NHDRQLWKLGTLPPGLITFWKRTYPLDR WHVLGLGYNP+VNQRDIE
Sbjct: 536 QNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIE 595

Query: 674 RAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP 717
           RAAVIHYNGNMKPWLEI IPKYRNYW+K+VDYDQ+YLRECNINP
Sbjct: 596 RAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNINP 639

Length = 639

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		717
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.97
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	99.97
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.95
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.94
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.88
PLN00176		333	galactinol synthase	99.85
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.65
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.06
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.44
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	94.82
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	93.56

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=1.3e-183  Score=1508.48  Aligned_cols=634  Identities=76%  Similarity=1.208  Sum_probs=607.4

Q ss_pred             CcchhHHHHHHHHHhhcceeEEeccccccCCCCcccchhhhhcccceecCCCccccccccccccccccCCCe-EEeeccc
Q 005035            1 MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPI-LVISDKI   79 (717)
Q Consensus         1 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~   79 (717)
                      |+.|++||+|||+||+|||+|||+||+++| ||++++||+|||+++++++|+.+||+||||+++  +||||+ |||+|++
T Consensus         3 ~~~r~~~~~~l~~~v~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~lk~p~~~~~~~~~   79 (639)
T PLN02829          3 MRLRNLVLGLLLLTVLSPILLYTDRLSASF-TPSSKRDFLEDVTALTLGGDASKLNVLPQESSS--SLKEPIGIVYSDNS   79 (639)
T ss_pred             HHHHHHHHHHHHHHHhhceeEEeccccccc-CCcchhhhhHHHHhhccCccchhcccccccccc--cccCceeEEeeccc
Confidence            567999999999999999999999999987 999999999999999999999999999999999  999999 9999998


Q ss_pred             cc--ccccccccccCcccccccceeeeeccCCCCCCCCCcccccccchhhhhcccchhhhhhcccccccccccccccccc
Q 005035           80 AQ--HSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKH  157 (717)
Q Consensus        80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (717)
                      +.  ....+++++++.+||+ +||||+| +++++|++|++|+|||+...+....+.+       +++.+.+.++..++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  150 (639)
T PLN02829         80 SKTIEPDSQDLLLDKRGEHK-ARVLSAT-DDDTHSQTDDIIKQVTQKAGQDDSDQQE-------KNSQSQSASQAESLEH  150 (639)
T ss_pred             cccccccccccccccccchh-hhhcccc-ccccccccchhHHHhhhccccccccccc-------ccccccccccccchhh
Confidence            87  3557789999999999 7999997 6669999999999999876544332221       2455566677888899


Q ss_pred             cccccccccccccCCccccccccccCCCCCchhHHHHhhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHHhhcccCC
Q 005035          158 QQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATK  237 (717)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~~~~~~~~~~~el~~~~~e~~~~~~~a~~  237 (717)
                      .|++.++++++..++|...+++++|++++|+|++||+||||||+||||++|||+++|++|+||||+||||+||+||+|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~  230 (639)
T PLN02829        151 VQQSAQTSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASK  230 (639)
T ss_pred             hhhhhccccccccccccccccccccccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhccCCCccccccccchhhH
Q 005035          238 DSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEY  317 (717)
Q Consensus       238 d~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~l~~~~~pk~~hcl~~rl~~e~  317 (717)
                      |+|||+++.++|++||++|++||++++||+++++||||||+++|||+++||+|++|++||||+|+|||||||+||||+||
T Consensus       231 d~~lp~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey  310 (639)
T PLN02829        231 DSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEY  310 (639)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcccCCCCCCCCccCCCcceEEEEeCceEEEEeeechhcchhhhhhhhhhHhhhhhhHHhhhhhhhHHHHHhhhhhH
Q 005035          318 YTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKVIYSSLKYALILPLVAKKIGENIRKLAISFLYSF  397 (717)
Q Consensus       318 ~~~~~~~~~~~~~~~~~d~~~~h~~~~sdnvla~~vvvnstv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (717)
                      |+++++++++|++|+|+||++|||||||||||||||||||||+||                                   
T Consensus       311 ~~~~~~~~~~p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na-----------------------------------  355 (639)
T PLN02829        311 YNLNSSEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNA-----------------------------------  355 (639)
T ss_pred             HhCChhhccCCChhhccCCccceEEEEecceeEEEeeeehhhhcc-----------------------------------
Confidence            999999999999999999999999999999999999999999999                                   


Q ss_pred             HHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCCCccEEEEEEeCcccHHHHHHHHHhCCCCCceEEEEeeccccc
Q 005035          398 VFLERWFRASINLLSFQRRPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTW  477 (717)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~i~sil~ns~~~~e~~kep~~lVFHIVTD~~ny~aMk~WF~~Np~~~A~IeV~nIedf~w  477 (717)
                                                          ++|++||||||||++||+||++||++||+++|+|||+|||+|+|
T Consensus       356 ------------------------------------~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~w  399 (639)
T PLN02829        356 ------------------------------------KHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTW  399 (639)
T ss_pred             ------------------------------------cCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhccc
Confidence                                                99999999999999999999999999999999999999999999


Q ss_pred             ccCcchHHHhhcccccceeEEecccccCCCcccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEecCeeEecCchhhhcc
Q 005035          478 LNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSI  557 (717)
Q Consensus       478 ln~s~~PVLkqL~s~~ii~~yF~~~~~~sd~~lk~r~p~yiS~lnylRFfIPeLfPelDKVLYLD~DVIVqgDLseLwdi  557 (717)
                      +|++|+||++||++..+++|||+.+..+++.++++|+|+|+|.++|+|||||++||+++||||||+||||++||++||++
T Consensus       400 ln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~i  479 (639)
T PLN02829        400 LNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSI  479 (639)
T ss_pred             ccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhC
Confidence            99999999999999999999999988777889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEeecccccccccccccccCCcccccCCCCCCCceeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCC
Q 005035          558 DLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGT  637 (717)
Q Consensus       558 DL~GkviAAVeDc~~~f~ry~~YLNfSnP~i~~~fdp~~cyFNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGd  637 (717)
                      ||+|+++|||+||...+++|..|++|++|.+..+|++..||||+|||||||++||++++|++|++|++.+.++.+|++|+
T Consensus       480 DL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlga  559 (639)
T PLN02829        480 DLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGT  559 (639)
T ss_pred             CCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccC
Confidence            99999999999999888899999999999988899999999999999999999999999999999999988888999999


Q ss_pred             CCccccccccceeeccCccccccCCCCCCCcccccCCCeEEEeeCCCCCcccCCccccHHHHHHHhccCcchhhhccCCC
Q 005035          638 LPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECNINP  717 (717)
Q Consensus       638 Lp~~Li~F~g~i~~LD~rWN~lgLGy~~~is~e~ie~aaIIHYnG~~KPWl~~~~~~Yrd~WwkY~~~d~~flr~Cni~~  717 (717)
                      ||+++++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||.+.++++|+++|.+|++++++|+++|||||
T Consensus       560 LPp~Ll~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~p  639 (639)
T PLN02829        560 LPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNINP  639 (639)
T ss_pred             CChHHHHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCCC
Confidence            99999999999999999999999999998888889999999999999999999999999999999999999999999998

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		717
1ss9_A		311	Crystal Structural Analysis Of Active Site Mutant Q		7e-04

>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311

Back alignment and structure

Iteration: 1

Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 30/191 (15%) Query: 514 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGET 573 N +++SI + R L E +KVL+LD DV+V+ L+ LW DL GA C + Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131 Query: 574 FHRFDRYLNFSNPLISKNFDPRACGWAY---GMNIFDLDEWRRQNITDVYHTWQKMNHDR 630 F +R + + A G Y G+ + +L +WRR +I + W + D Sbjct: 132 F--VERQEGYKQKI------GMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183 Query: 631 QLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQ----------RD----IERAA 676 ++ + GL Y RF + + Y N+ RD + A Sbjct: 184 MQYQDEDILNGLFKG-GVCYANSRF-NFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVA 241 Query: 677 VIHYNGNMKPW 687 V HY G KPW Sbjct: 242 VSHYCGPAKPW 252

PyMOL of 1ss9

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		717
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	1e-56
3tzt_A		276	Glycosyl transferase family 8; structural genomics	5e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	4e-05

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  194 bits (495), Expect = 1e-56
 Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 27/231 (11%)

Query: 486 LKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDV 545
           +         +  F        +     N +++SI  + R  L E     +KVL+LD DV
Sbjct: 48  VAANLRGGGGNIRFIDVNPEDFAGFPL-NIRHISITTYARLKLGEYIADCDKVLYLDIDV 106

Query: 546 VVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMN 604
           +V+  L+ LW  DL     GA  +   E    + + +  ++             +  G+ 
Sbjct: 107 LVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG---------EYYFNAGVL 157

Query: 605 IFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYN 664
           + +L +WRR +I  +   W +   D   ++   +  GL  F       +  ++ +   Y 
Sbjct: 158 LINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYANSRFNFMPTNYA 215

Query: 665 PSVN--------------QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTK 701
              N                 +   AV HY G  KPW           +T+
Sbjct: 216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTE 266

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		717
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.87
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.8

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=4.7e-41  Score=344.23  Aligned_cols=241  Identities=18%  Similarity=0.228  Sum_probs=170.4

Q ss_pred             cccccccCCCCCCCCCCCCCCccEEEEEEeCcccHHH---HHHHHHhCCCCCceEEEEeecccccccCcchHHHhhcccc
Q 005035          416 RPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAA---MRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQ  492 (717)
Q Consensus       416 ~~~i~sil~ns~~~~e~~kep~~lVFHIVTD~~ny~a---Mk~WF~~Np~~~A~IeV~nIedf~wln~s~~PVLkqL~s~  492 (717)
                      ..+|.||++|+       ++ +++.|||++|+.+-..   ++.++.   ..++.|+++.+++- +        ++.+   
T Consensus        21 ~v~i~Sl~~~~-------~~-~~~~~~il~~~is~~~~~~L~~~~~---~~~~~i~~~~~~~~-~--------~~~~---   77 (276)
T 3tzt_A           21 KVLMTSIYINN-------PG-RIFDVYLIHSRISEDKLKDLGEDLK---KFSYTLYPIRATDD-L--------FSFA---   77 (276)
T ss_dssp             HHHHHHHHHHS-------TT-CCEEEEEEESCCCHHHHHHHHHHHH---TTTCEEEEEECC-------------------
T ss_pred             HHHHHHHHHhC-------CC-CceEEEEEeCCCCHHHHHHHHHHHH---HcCCEEEEEEeCHH-H--------HhcC---
Confidence            35788899998       43 6899999999877654   444443   23567887766531 1        0110   


Q ss_pred             cceeEEecccccCCCcccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEecCeeEecCchhhhccCCCCCeeEEeeccc
Q 005035          493 SMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCG  571 (717)
Q Consensus       493 ~ii~~yF~~~~~~sd~~lk~r~p~yiS~lnylRFfIPeLfPe-lDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~  571 (717)
                                          ...+++|.++|+||++|+++|+ ++||||||+|+||++||++||++|++|+++|||+||+
T Consensus        78 --------------------~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~  137 (276)
T 3tzt_A           78 --------------------KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTG  137 (276)
T ss_dssp             --------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--
T ss_pred             --------------------ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecc
Confidence                                0124678999999999999994 9999999999999999999999999999999999996


Q ss_pred             ccccccccccccCCcccccCCCCCCCceeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCccccccccceee
Q 005035          572 ETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYP  651 (717)
Q Consensus       572 ~~f~ry~~YLNfSnP~i~~~fdp~~cyFNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g~i~~  651 (717)
                      ...  ...+.+      ..++++..|||||||||||+++||+.++++++++|++.+.....  .|||+..+.+|.+++++
T Consensus       138 ~~~--~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~f~~~~~~  207 (276)
T 3tzt_A          138 KTD--MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNAMYGDRIYP  207 (276)
T ss_dssp             --------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEE
T ss_pred             cch--HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHHHHhCCEEE
Confidence            421  011110      11343445999999999999999999999999999987654332  36677777899999999


Q ss_pred             ccC-ccccccCCCCCC-----Cc----ccccCCCeEEEeeCCCCCcccCCccccHHHHHHHhccCcchh
Q 005035          652 LDR-FWHVLGLGYNPS-----VN----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYL  710 (717)
Q Consensus       652 LD~-rWN~lgLGy~~~-----is----~e~ie~aaIIHYnG~~KPWl~~~~~~Yrd~WwkY~~~d~~fl  710 (717)
                      ||. +||+++ |+...     .+    ....++|+||||+|..|||...+.++|+++||+|+++..+++
T Consensus       208 Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          208 LDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             EEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             CCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            998 999986 33210     01    123467999999999999999999999999999999887775

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		717
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	3e-28
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	2e-10

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  112 bits (281), Expect = 3e-28
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 27/239 (11%)

Query: 478 LNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNK 537
           ++ +    +         +  F        +       +++SI  + R  L E     +K
Sbjct: 40  ISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNI-RHISITTYARLKLGEYIADCDK 98

Query: 538 VLFLDDDVVVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPLISKNFDPRA 596
           VL+LD DV+V+  L+ LW  DL     GA  +   E    + + +  ++     N     
Sbjct: 99  VLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN----- 153

Query: 597 CGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFW 656
                G+ + +L +WRR +I  +   W +   D   ++   +  GL  F       +  +
Sbjct: 154 ----AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYANSRF 207

Query: 657 HVLGLGYNPSVN--------------QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTK 701
           + +   Y    N                 +   AV HY G  KPW           +T+
Sbjct: 208 NFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTE 266

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		717
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.88

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=6.5e-38  Score=313.89  Aligned_cols=228  Identities=19%  Similarity=0.240  Sum_probs=172.8

Q ss_pred             ccEEEEEEeCcccHHHHHHHHHhCCCCCceEEEEeecccccccCcchHHHhhcccccceeEEecccccCCCcccccCCCC
Q 005035          437 SNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPK  516 (717)
Q Consensus       437 ~~lVFHIVTD~~ny~aMk~WF~~Np~~~A~IeV~nIedf~wln~s~~PVLkqL~s~~ii~~yF~~~~~~sd~~lk~r~p~  516 (717)
                      ..++|||++++.+-.........-...++.|+++.++.-.+..         .               .       ...+
T Consensus        29 ~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~---------~---------------~-------~~~~   77 (282)
T d1ga8a_          29 TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAG---------F---------------P-------LNIR   77 (282)
T ss_dssp             SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTT---------S---------------C-------CCCT
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhcc---------c---------------c-------cccc
Confidence            5799999999988776655544434446677766554322100         0               0       1235


Q ss_pred             CccHhhhHHhhhhhhcCCCCeEEEEecCeeEecCchhhhccCCCCCeeEEeecccccc-cccccccccCCcccccCCCCC
Q 005035          517 YLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETF-HRFDRYLNFSNPLISKNFDPR  595 (717)
Q Consensus       517 yiS~lnylRFfIPeLfPelDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~~~f-~ry~~YLNfSnP~i~~~fdp~  595 (717)
                      ++|.++|+||+||++||+++||||||+|+||.+||++||++|++++.+|||.|+.... ..+...         .++.+.
T Consensus        78 ~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~---------~~~~~~  148 (282)
T d1ga8a_          78 HISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQK---------IGMADG  148 (282)
T ss_dssp             TCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHH---------TTCCTT
T ss_pred             ccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHH---------hCCCCC
Confidence            7899999999999999999999999999999999999999999999999999975321 111111         234456


Q ss_pred             CCceeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCccccccccceeeccCccccccCCCCCCC--------
Q 005035          596 ACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSV--------  667 (717)
Q Consensus       596 ~cyFNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g~i~~LD~rWN~lgLGy~~~i--------  667 (717)
                      .+||||||||||+++||+.++++++.++++.+.....+  +||+..+.+|.|++..||.+||++..+|....        
T Consensus       149 ~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~--~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~  226 (282)
T d1ga8a_         149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQY--QDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHT  226 (282)
T ss_dssp             SCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSS--THHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----CSCC
T ss_pred             CceeecceeeechhhhhhhhHHHHHHHHHHhcccCccc--CchhHHHHHhcCCEEeCCHHHeeccccccccccccccccc
Confidence            79999999999999999999999999998876544322  44555567899999999999999864332110        


Q ss_pred             ------cccccCCCeEEEeeCCCCCcccCCccccHHHHHHHhccC
Q 005035          668 ------NQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYD  706 (717)
Q Consensus       668 ------s~e~ie~aaIIHYnG~~KPWl~~~~~~Yrd~WwkY~~~d  706 (717)
                            ..+...+++||||+|+.|||...+.+.+++.|++|++..
T Consensus       227 ~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         227 DPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             CHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             hhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence                  012356799999999999999988889999999998653

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure