Citrus Sinensis ID: 005046
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 716 | 2.2.26 [Sep-21-2011] | |||||||
| A7Z050 | 1477 | Inositol hexakisphosphate | yes | no | 0.917 | 0.444 | 0.446 | 1e-156 | |
| Q9VR59 | 1696 | Inositol hexakisphosphate | no | no | 0.925 | 0.390 | 0.424 | 1e-154 | |
| Q6PFW1 | 1433 | Inositol hexakisphosphate | yes | no | 0.917 | 0.458 | 0.443 | 1e-154 | |
| P0C644 | 1434 | Inositol hexakisphosphate | yes | no | 0.910 | 0.454 | 0.435 | 1e-154 | |
| Q5RDF1 | 1409 | Inositol hexakisphosphate | yes | no | 0.920 | 0.467 | 0.444 | 1e-154 | |
| Q5XHF8 | 1131 | Inositol hexakisphosphate | N/A | no | 0.921 | 0.583 | 0.439 | 1e-152 | |
| Q5REW0 | 1244 | Inositol hexakisphosphate | yes | no | 0.921 | 0.530 | 0.442 | 1e-151 | |
| O43314 | 1243 | Inositol hexakisphosphate | no | no | 0.921 | 0.530 | 0.442 | 1e-150 | |
| Q6ZQB6 | 1129 | Inositol hexakisphosphate | yes | no | 0.921 | 0.584 | 0.442 | 1e-150 | |
| P91309 | 1323 | Inositol hexakisphosphate | yes | no | 0.944 | 0.510 | 0.397 | 1e-131 |
| >sp|A7Z050|VIP1_BOVIN Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Bos taurus GN=PPIP5K1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 332/744 (44%), Positives = 439/744 (59%), Gaps = 87/744 (11%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F VI G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPMEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVP--RSR 422
HGDRTPKQK+K++VT + +L K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVTHPRFFSLFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCH------------- 469
PG E + + E K ++L + G F + V L+ H
Sbjct: 459 PGGEIEEKTGKLEQLK------SVLEMYGHFSGIN--RKVQLTYYPHGVKASNEGQDTQR 510
Query: 470 ------LLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRH 519
LLL G+ Q + Y G G GLLRLHST+RH
Sbjct: 511 EALAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRH 570
Query: 520 DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGL-----DNASIEM 574
DLKIY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL D+ S
Sbjct: 571 DLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDGDSLSSCQ 628
Query: 575 EEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK--KVTEQVR 632
KARL+ I++ + G D +A P ++ LL + + KV +QV
Sbjct: 629 HRVKARLHHILQQDAPF----GPEDYNQLA-----PTGSTSLLSSMAVIQNPVKVCDQVF 679
Query: 633 QLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLE 692
L ++ + E + ++D+ SE LM RW KLE
Sbjct: 680 DLIENLTHQIRE-------------RMQDPKSVDLQLYH------SETLELMLQRWSKLE 720
Query: 693 RDLYNERKERFDITQIPDVYDSCK 716
RD + ++ R+DI++IPD+YD K
Sbjct: 721 RD-FRQKSGRYDISKIPDIYDCVK 743
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Activated when cells are exposed to hyperosmotic stress. Bos taurus (taxid: 9913) EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2EC: 4 |
| >sp|Q9VR59|VIP1_DROME Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase OS=Drosophila melanogaster GN=l(1)G0196 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/744 (42%), Positives = 440/744 (59%), Gaps = 81/744 (10%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
K++ +G+C M KK S PM +IL RL F +++ F + VIL +P++ WP CDCL++F+
Sbjct: 65 KQVVVGICAMAKKTQSKPMKEILTRLGEFEFIKLVTFEENVILREPVQNWPTCDCLVSFH 124
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PLEKA YA LR PF++N L Q+ + DRR+VY LEK GI +PRYA+++R+ P
Sbjct: 125 SKGFPLEKAIEYAQLRNPFVLNNLHMQYDIQDRRRVYAILEKEGIEIPRYAVLDRDSPDP 184
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH+I IYYP+SAGGG + LFRK+G+RSS
Sbjct: 185 KHHELIESEDHVEVNGITFNKPFVEKPVSAEDHNIYIYYPTSAGGGSQRLFRKIGSRSSV 244
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ RVR+ GS+IYE+FMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+
Sbjct: 245 YSPE-SRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEI 303
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L +EK ++R+VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 304 RYPVILNHSEKLISRKVCLAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAK 363
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L M L P L IP +P+++++ P+ PT TFG+ ELRCV+AV+
Sbjct: 364 ILGNMILRELTPTLH--IPWSVPFQLDDPPIVPT-----------TFGKMMELRCVVAVI 410
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQK+K++V K + KY+G + KLK QLQ++LD R L+
Sbjct: 411 RHGDRTPKQKMKVEVRHPKFFEIFEKYDGYK-LGHVKLKRPKQLQEILDIARFLLSEIHT 469
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKF------------FNVQDVLLS----IQ 467
++ E ++ + + + + H G K + D L+ ++
Sbjct: 470 KAHAEIEEKESKLEQLKNVLEMYGHFSGINRKVQMKYQPKGRPRGSSSDDTNLAADQPVE 529
Query: 468 CHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWG------SHSEGTGLLRLHSTYRHDL 521
L+L G+ Q + + Y G S ++G GLLRLHST+RHDL
Sbjct: 530 PSLVLILKWGGELTPAGRIQAEELGRIFRCMYPGGQGRSDYSGTQGLGLLRLHSTFRHDL 589
Query: 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLV--SKDSSMLDGLDNASIEMEEAKA 579
KIY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V + + +LD ++S AK
Sbjct: 590 KIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANTNGLLDNDCDSSKYQNLAKG 649
Query: 580 RLNEII-------KSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVR 632
RL+E++ K ++I+ S D V P + + L++ + +
Sbjct: 650 RLHELMQNDREFSKEDRELINPCNSKSITQALDFVKNPVDCCHHVHLLIRELLHIISIKK 709
Query: 633 QLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLE 692
K +D L +D LM RW K+E
Sbjct: 710 DDPKTKDAILYHGETWD---------------------------------LMRCRWEKIE 736
Query: 693 RDLYNERKERFDITQIPDVYDSCK 716
+D ++ + + FDI++IPD+YD K
Sbjct: 737 KD-FSTKSKLFDISKIPDIYDCIK 759
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|Q6PFW1|VIP1_HUMAN Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Homo sapiens GN=PPIP5K1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 330/744 (44%), Positives = 437/744 (58%), Gaps = 87/744 (11%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVP--RSR 422
HGDRTPKQK+K++V + L K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVKHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCH------------- 469
PG E + + E K ++L + G F + V L+ H
Sbjct: 459 PGGEIEEKTGKLEQLK------SVLEMYGHFSGIN--RKVQLTYYPHGVKASNEGQDPQR 510
Query: 470 ------LLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRH 519
LLL G+ Q + Y G G GLLRLHST+RH
Sbjct: 511 ETLAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRH 570
Query: 520 DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGL-----DNASIEM 574
DLKIY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL D+ S
Sbjct: 571 DLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDGDSLSSCQ 628
Query: 575 EEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK--KVTEQVR 632
KARL+ I++ + G D +A P ++ LL + + KV +QV
Sbjct: 629 HRVKARLHHILQQDAPF----GPEDYDQLA-----PTRSTSLLNSMTIIQNPVKVCDQVF 679
Query: 633 QLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLE 692
L ++ + E + ++D+ SE LM RW KLE
Sbjct: 680 ALIENLTHQIRE-------------RMQDPRSVDLQLYH------SETLELMLQRWSKLE 720
Query: 693 RDLYNERKERFDITQIPDVYDSCK 716
RD + ++ R+DI++IPD+YD K
Sbjct: 721 RD-FRQKSGRYDISKIPDIYDCVK 743
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Activated when cells are exposed to hyperosmotic stress. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|P0C644|VIP1_RAT Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Rattus norvegicus GN=Ppip5k1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 326/749 (43%), Positives = 440/749 (58%), Gaps = 97/749 (12%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 56 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHS 115
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 116 KGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPE 175
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 176 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 235
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEVR
Sbjct: 236 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 294
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 295 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 354
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 355 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 401
Query: 365 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVP--RSR 422
HGDRTPKQK+K++VT + L K+ GG + KLK QLQ++LD TR+L+
Sbjct: 402 HGDRTPKQKMKMEVTHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 460
Query: 423 PGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCH------------- 469
PG E + + E K ++L + G F + V L+ H
Sbjct: 461 PGAEIEEKTGKLEQLK------SVLEMYGHFSGIN--RKVQLTYYPHGVKASSEGQDLQR 512
Query: 470 ------LLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRH 519
LLL G+ Q + Y G G GLLRLHST+RH
Sbjct: 513 EPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRH 572
Query: 520 DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIE-----M 574
DLKIY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL ++ +
Sbjct: 573 DLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDSDSLSSCQ 630
Query: 575 EEAKARLNEIIKSGSKM-------IHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKV 627
KARL+ I++ + + GS+ + + + + N ++ ++ L + +
Sbjct: 631 HRVKARLHHILQQDAPFGPEDYDQLAPTGSTS---LLNSMSVIQNPVKVCDQVFALIENL 687
Query: 628 TEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYAR 687
T Q+R+ +D +++D+ SE LM R
Sbjct: 688 THQIRERMQD------------------------PSSVDLQLYH------SETLELMLQR 717
Query: 688 WRKLERDLYNERKERFDITQIPDVYDSCK 716
W KLERD + ++ R+DI++IPD+YD K
Sbjct: 718 WSKLERD-FRQKSGRYDISKIPDIYDCVK 745
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Activated when cells are exposed to hyperosmotic stress. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|Q5RDF1|VIP1_PONAB Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Pongo abelii GN=PPIP5K1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 330/742 (44%), Positives = 435/742 (58%), Gaps = 83/742 (11%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F VI G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVY VGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SIVRKTGSYIYEEFMPTDGTDVKVYAVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AFRQ VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFRQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVP--RSR 422
HGDRTPKQK+K++V + L K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVKHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQDVLL----------------S 465
PG E + + E K ++L + G F VQ +
Sbjct: 459 PGGEIEEKTGKLEQLK------SVLEMYGHFSGINRKVQSTYYPHGVKASNEGQDPQRET 512
Query: 466 IQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRHDL 521
+ LLL G+ Q + Y G G GLLRLHST+RHDL
Sbjct: 513 LAPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDL 572
Query: 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGL-----DNASIEMEE 576
KIY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL D+ S
Sbjct: 573 KIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDGDSLSSCQHR 630
Query: 577 AKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK--KVTEQVRQL 634
KARL+ I++ + G D +A P ++ LL + + KV +QV L
Sbjct: 631 VKARLHHILQQDAPF----GPEDYDELA-----PTRSTSLLNSMTVIQNPVKVCDQVFAL 681
Query: 635 AKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERD 694
++ + E + ++D+ SE LM RW KLERD
Sbjct: 682 IENLTHQIRE-------------RMQDPRSVDLQLYH------SETLELMLQRWSKLERD 722
Query: 695 LYNERKERFDITQIPDVYDSCK 716
+ ++ R+DI++IPD+YD K
Sbjct: 723 -FRQKSGRYDISKIPDIYDCVK 743
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Activated when cells are exposed to hyperosmotic stress. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|Q5XHF8|VIP2_XENLA Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Xenopus laevis GN=ppip5k2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 326/742 (43%), Positives = 436/742 (58%), Gaps = 82/742 (11%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+RL F V+ F ++VIL + +E WP+CDCLI+F+
Sbjct: 56 RQIVVGICAMAKKSKSKPMKEILERLSLFKYITVVIFEEEVILNETVENWPLCDCLISFH 115
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+ L+KA +YA LR PF++N+L Q+ + DRR+VY L GI +PRYA++NR+
Sbjct: 116 SKGFLLDKAVAYAKLRNPFVINDLNLQYQIQDRREVYRILTNEGIMLPRYAVLNRDPNKP 175
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
E IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 176 EECNLIEGEDHVEVNGEIFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 235
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 236 YSPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 294
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 295 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRASGQSYVCDVNGFSFVKNSMKYYDDCAK 354
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L + + AP IP +P + + P+ PT T G ELRCVIAV+
Sbjct: 355 ILGNIIMRELAPVFH--IPWSIPLEAEDIPIVPT-----------TSGTKMELRCVIAVI 401
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQK+K++V ++ +L KY+G + + KLK QLQ++LD R L+
Sbjct: 402 RHGDRTPKQKMKMEVRHQRFFDLFEKYHGYK-TGKIKLKKPKQLQEVLDIARQLL--VEL 458
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQDVLLSIQC-------------- 468
G+ +DSE E+ + +++ +L + G F VQ L C
Sbjct: 459 GQNNDSEIEESKAKLEQL--KTVLEMYGHFSGINRKVQLTYLPHGCPKTSSEEEDCRREE 516
Query: 469 -HLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRHDLKI 523
LLL G+ Q + Y G G GLLRLHSTYRHDLKI
Sbjct: 517 PSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTYRHDLKI 576
Query: 524 YSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIE-----MEEAK 578
Y+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL ++ + K
Sbjct: 577 YASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDSDSLSSCQHRVK 634
Query: 579 ARLNEIIKSGSKMIHSNGSSDCPWMA----DGVGLPPNASELLPKLVKLTKKVTEQVRQL 634
ARL+EI++ + P + + N + K+ L + +T Q+RQ
Sbjct: 635 ARLHEILQRDRDFSSEDFEKLSPTGSVSQIKSMHFIKNPVKTCDKVYSLIQSLTSQIRQ- 693
Query: 635 AKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERD 694
+ ED A+ Y SE LM RW KLE+D
Sbjct: 694 -RMEDPKFADIQLYH----------------------------SETLELMLRRWSKLEKD 724
Query: 695 LYNERKERFDITQIPDVYDSCK 716
+ + R+DI++IPD+YD K
Sbjct: 725 -FKTKNGRYDISKIPDIYDCIK 745
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|Q5REW0|VIP2_PONAB Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Pongo abelii GN=PPIP5K2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 329/743 (44%), Positives = 439/743 (59%), Gaps = 83/743 (11%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+F+
Sbjct: 42 RQIVVGICSMAKKSKSKPMKEILERVSLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 101
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 102 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 161
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 162 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 221
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 222 YSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 280
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 281 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 340
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L + + AP IP +P + + P+ PT T G ELRCVIAV+
Sbjct: 341 ILGNIVMRELAPQFH--IPWSIPLEAEDIPIVPT-----------TSGTMMELRCVIAVI 387
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQK+K++V +K +L K +G + + KLK QLQ++LD R L+
Sbjct: 388 RHGDRTPKQKMKMEVRHQKFFDLFEKCDGYK-SGKLKLKKPKQLQEVLDIARQLL--MEL 444
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN--VQDVLLSIQC------------- 468
G+ +DSE E E+ K +L + G F N VQ L C
Sbjct: 445 GQNNDSEIE--ENKPKLEQLKTVLEMYGHFFSGINRKVQLTYLPHGCPKTSSEEEDSRRE 502
Query: 469 --HLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRHDLK 522
LLL G+ Q + Y G G GLLRLHSTYRHDLK
Sbjct: 503 EPSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTYRHDLK 562
Query: 523 IYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIE-----MEEA 577
IY+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL ++ + +
Sbjct: 563 IYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDSDSLSSCQQRV 620
Query: 578 KARLNEIIKSGSKMIHSNGSSDCP----WMADGVGLPPNASELLPKLVKLTKKVTEQVRQ 633
KARL+EI++ + P + + L N + K+ L + +T Q+R
Sbjct: 621 KARLHEILQKDRDFTAEDYEELTPSGSVSLIKSMHLIKNPVKTCDKVYSLIQSLTSQIRH 680
Query: 634 LAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLER 693
+ ED ++ Y SE LM RW KLE+
Sbjct: 681 --RMEDPKSSDIQLYH----------------------------SETLELMLRRWSKLEK 710
Query: 694 DLYNERKERFDITQIPDVYDSCK 716
D + + R+DI++IPD+YD K
Sbjct: 711 D-FKAKNGRYDISKIPDIYDCIK 732
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|O43314|VIP2_HUMAN Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Homo sapiens GN=PPIP5K2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 328/742 (44%), Positives = 438/742 (59%), Gaps = 82/742 (11%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+F+
Sbjct: 42 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 101
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 102 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 161
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 162 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 221
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 222 YSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 280
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 281 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 340
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L + + AP IP +P + + P+ PT T G ELRCVIAV+
Sbjct: 341 ILGNIVMRELAPQFH--IPWSIPLEAEDIPIVPT-----------TSGTMMELRCVIAVI 387
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQK+K++V +K +L K +G + + KLK QLQ++LD R L+
Sbjct: 388 RHGDRTPKQKMKMEVRHQKFFDLFEKCDGYK-SGKLKLKKPKQLQEVLDIARQLL--MEL 444
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQDVLLSIQC-------------- 468
G+ +DSE E E+ K +L + G F VQ L C
Sbjct: 445 GQNNDSEIE--ENKPKLEQLKTVLEMYGHFSGINRKVQLTYLPHGCPKTSSEEEDSRREE 502
Query: 469 -HLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRHDLKI 523
LLL G+ Q + Y G G GLLRLHSTYRHDLKI
Sbjct: 503 PSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTYRHDLKI 562
Query: 524 YSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIE-----MEEAK 578
Y+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL ++ + + K
Sbjct: 563 YASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDSDSLSSCQQRVK 620
Query: 579 ARLNEIIKSGSKMIHSNGSSDCP----WMADGVGLPPNASELLPKLVKLTKKVTEQVRQL 634
ARL+EI++ + P + + L N + K+ L + +T Q+R
Sbjct: 621 ARLHEILQKDRDFTAEDYEKLTPSGSISLIKSMHLIKNPVKTCDKVYSLIQSLTSQIRH- 679
Query: 635 AKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERD 694
+ ED ++ Y SE LM RW KLE+D
Sbjct: 680 -RMEDPKSSDIQLYH----------------------------SETLELMLRRWSKLEKD 710
Query: 695 LYNERKERFDITQIPDVYDSCK 716
+ + R+DI++IPD+YD K
Sbjct: 711 -FKTKNGRYDISKIPDIYDCIK 731
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|Q6ZQB6|VIP2_MOUSE Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Mus musculus GN=Ppip5k2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 328/742 (44%), Positives = 437/742 (58%), Gaps = 82/742 (11%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F +++IL +P+E WP+CDCLI+F+
Sbjct: 48 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEIILNEPVENWPLCDCLISFH 107
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR VY L+ GI +PRYA++NR+
Sbjct: 108 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRRDVYSILQAEGILLPRYAILNRDPNNP 167
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 168 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 227
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 228 YSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 286
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 287 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 346
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L + + AP IP +P + + P+ PT T G ELRCVIAV+
Sbjct: 347 ILGNIVMRELAPQFH--IPWSIPLEAEDIPIVPT-----------TSGTMMELRCVIAVI 393
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQK+K++V +K +L K +G + + KLK QLQ++LD R L+
Sbjct: 394 RHGDRTPKQKMKMEVRHQKFFDLFEKCDGYK-SGKLKLKKPKQLQEVLDIARQLL--MEL 450
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQDVLLSIQC-------------- 468
G+ +DSE E E+ K +L + G F VQ L C
Sbjct: 451 GQNNDSEIE--ENKSKLEQLKTVLEMYGHFSGINRKVQLTYLPHGCPKTSSEEEDNRREE 508
Query: 469 -HLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHS----EGTGLLRLHSTYRHDLKI 523
LLL G+ Q + Y G G GLLRLHSTYRHDLKI
Sbjct: 509 PSLLLVLKWGGELTPAGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTYRHDLKI 568
Query: 524 YSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIE-----MEEAK 578
Y+SDEGRVQM+AAAFAKGLL LEG+LTPILV +V S+ ++GL ++ + + K
Sbjct: 569 YASDEGRVQMTAAAFAKGLLALEGELTPILVQMVK--SANMNGLLDSDSDSLSSCQQRVK 626
Query: 579 ARLNEIIKSGSKMIHSNGSSDCP----WMADGVGLPPNASELLPKLVKLTKKVTEQVRQL 634
ARL+EI++ + P + + L N + K+ L + +T Q+R
Sbjct: 627 ARLHEILQKDRDFTAEDYEKLTPSGSISVIKSMHLIKNPVKTCDKVYSLIQSLTSQIRY- 685
Query: 635 AKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERD 694
+ ED A+ Y SE LM RW KLE+D
Sbjct: 686 -RMEDPKSADIQLYH----------------------------SETLELMLRRWSKLEKD 716
Query: 695 LYNERKERFDITQIPDVYDSCK 716
+ + R+DI++IPD+YD K
Sbjct: 717 -FKTKNGRYDISKIPDIYDCIK 737
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
| >sp|P91309|VIP1_CAEEL Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase OS=Caenorhabditis elegans GN=F46F11.1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust.
Identities = 303/762 (39%), Positives = 421/762 (55%), Gaps = 86/762 (11%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAF-GEF-EVIHFGDKVILEDPIEKWPICDCLIAF 63
KITIG+C M +K S PM I+ ++ F G++ + F ++VI+ +P+E WP+C CL++F
Sbjct: 16 KITIGICAMNRKATSKPMRAIMKKIIDFYGQWVDSFIFPEQVIINEPVENWPLCHCLVSF 75
Query: 64 YSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPY 123
+S+ +PLEKA +Y LR P+++N L+ Q+ L DRR V++ L GI PR+ V R P
Sbjct: 76 HSTEFPLEKAIAYVKLRNPYVINNLDRQYDLLDRRTVFKILSDNGIEHPRHGYVIRGRPN 135
Query: 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS 183
+ +E D +EV+G F KPFVEKP+ +DH++ IYYPSS GGG + LFRK+ NRSS
Sbjct: 136 EPDTELVEHPDHIEVNGEVFNKPFVEKPISSEDHNVYIYYPSSVGGGSQRLFRKINNRSS 195
Query: 184 EFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243
+ P VR+EGSYIYEEF+P GTDVKVY VGP YAHAEARK+P +DG V R+ DGKE
Sbjct: 196 WYSPK-SEVRKEGSYIYEEFIPADGTDVKVYAVGPFYAHAEARKAPGLDGKVERDSDGKE 254
Query: 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAA 303
VRYPV+L+ EKQ+A+++ +AF Q VCGFDLLR G+SYVCDVNG+SFVK S KYY+D A
Sbjct: 255 VRYPVILSNKEKQIAKKIVLAFGQTVCGFDLLRANGKSYVCDVNGFSFVKTSTKYYEDTA 314
Query: 304 CVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGT-FGQSEELRCVIAV 362
+L + A + +P +P +P GL + T G+ ELRCV+AV
Sbjct: 315 KILGNQIVRHYAKSKNWRVPSDMP----QPPILDLGLGDDPPMITTPSGKLAELRCVVAV 370
Query: 363 MRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILV---P 419
+RHGDRTPKQK+KL VT+++ L KY+G + + E K+K QL ++L+ R LV
Sbjct: 371 IRHGDRTPKQKMKLIVTDQRFFALFEKYDGYK-KHEIKMKKPNQLMEVLELARALVIEKQ 429
Query: 420 RSRPG-----RESDSEAEDFEHSKKRIIC----------VAILHLGGQF----------- 453
R R RE E E + +C +L + G F
Sbjct: 430 RDRHQILEKLREGTGEEEIHKSEHDLEVCEEEMKKWEQMRTVLEMYGHFSGINRKVQMKY 489
Query: 454 --EKFFNVQD-----------VLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYW 500
E+ D ++L L A + + + L Y G+
Sbjct: 490 LKERETKTSDEELRREGPALLLILKWGGELTTAGNMQAEALGRLFRTLYP--GIRRTD-G 546
Query: 501 WGSHSEGTGL--LRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVS 558
S + GL LRLHSTYRHDLKIY+SDEGRVQ +AAAFAKGLL LEG+LTPIL+ +V
Sbjct: 547 KSSPEDTQGLGFLRLHSTYRHDLKIYASDEGRVQTTAAAFAKGLLALEGELTPILMQMVK 606
Query: 559 KDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWM-ADGVGLPPNASELL 617
S+ DGL + ++ +ARL + + +H +D + D + L PN +
Sbjct: 607 --SANTDGLLD-----DDCQARLYQT--ELKRYLHKALQADRDFTPQDYLELNPNGLRAI 657
Query: 618 PKLVKLTKKVTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCG 677
++ K + ++A ++ VI Y Q + G T
Sbjct: 658 TAAMEFIKNPRKMCHEIAGYVEKMCG------VIVEYSQTRPTGST-----------LYL 700
Query: 678 SEGFLLMYARWRKLERDLYNERKE---RFDITQIPDVYDSCK 716
E L RW K R+ + K FDI++IPD+YD+ K
Sbjct: 701 QESMDLAQRRWNKELREFRRKNKHGEVEFDISKIPDIYDNIK 742
|
Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 2 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 716 | ||||||
| 255552826 | 1054 | acid phosphatase, putative [Ricinus comm | 0.988 | 0.671 | 0.831 | 0.0 | |
| 224080003 | 1061 | predicted protein [Populus trichocarpa] | 0.977 | 0.659 | 0.819 | 0.0 | |
| 359488777 | 1051 | PREDICTED: inositol hexakisphosphate and | 0.980 | 0.667 | 0.815 | 0.0 | |
| 356568616 | 1053 | PREDICTED: inositol hexakisphosphate and | 0.993 | 0.675 | 0.826 | 0.0 | |
| 224140923 | 1038 | predicted protein [Populus trichocarpa] | 0.966 | 0.666 | 0.817 | 0.0 | |
| 356529953 | 1059 | PREDICTED: inositol hexakisphosphate and | 0.993 | 0.671 | 0.818 | 0.0 | |
| 357501599 | 1052 | Inositol hexakisphosphate and diphosphoi | 0.991 | 0.674 | 0.823 | 0.0 | |
| 124359918 | 1058 | Histidine acid phosphatase [Medicago tru | 0.991 | 0.671 | 0.816 | 0.0 | |
| 334187693 | 1059 | phosphoglycerate mutase-like protein [Ar | 0.993 | 0.671 | 0.798 | 0.0 | |
| 18417557 | 1049 | phosphoglycerate mutase-like protein [Ar | 0.993 | 0.677 | 0.798 | 0.0 |
| >gi|255552826|ref|XP_002517456.1| acid phosphatase, putative [Ricinus communis] gi|223543467|gb|EEF44998.1| acid phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1227 bits (3175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/725 (83%), Positives = 641/725 (88%), Gaps = 17/725 (2%)
Query: 7 ITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSS 66
I IGVCVMEKKV SAPMGQI+DRLQAFGEFE+IHFGDKVI EDPIE WPICDCLIAFYSS
Sbjct: 12 IKIGVCVMEKKVLSAPMGQIMDRLQAFGEFEIIHFGDKVIAEDPIESWPICDCLIAFYSS 71
Query: 67 GYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126
GYPLEKAE+YA LRKPFLVNELEPQHLLHDRRKVY++LE YGIPVPRYALVNRE PYQEL
Sbjct: 72 GYPLEKAEAYAALRKPFLVNELEPQHLLHDRRKVYQRLEMYGIPVPRYALVNREFPYQEL 131
Query: 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFH 186
DYF EEEDFVEVHGNRFWKPFVEKP+ GD+HSIMIYYPSSAGGGMKELFRKVGNRSSEFH
Sbjct: 132 DYFSEEEDFVEVHGNRFWKPFVEKPIDGDNHSIMIYYPSSAGGGMKELFRKVGNRSSEFH 191
Query: 187 PDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY 246
P+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY
Sbjct: 192 PEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY 251
Query: 247 PVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVL 306
PVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVL
Sbjct: 252 PVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVL 311
Query: 307 RKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIAVMRH 365
RKMFL+AKAPHLSS IPP LPWK+NEPVQP+EGLTRQGSG +GTFGQSEELRCVI VMRH
Sbjct: 312 RKMFLDAKAPHLSSTIPPTLPWKINEPVQPSEGLTRQGSGIIGTFGQSEELRCVITVMRH 371
Query: 366 GDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGR 425
GDRTPKQKVKLKVTEEKLLNLMLKYNGGRPR+ETKLKSA+QLQDLLDATRILVPR RPGR
Sbjct: 372 GDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRSETKLKSAIQLQDLLDATRILVPRIRPGR 431
Query: 426 ESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDV--LLSIQCHLLLANLVSGQFIDF 483
ESDSEAED EH++K A+L GG F + + L ++ + ++
Sbjct: 432 ESDSEAEDIEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKIPKSTGEAEEERPVEA 491
Query: 484 LIEQFYQDNGV---------NEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSSDEGRV 531
L+ Y GV E+ ++ ++ EGTGLLRLHSTYRHDLKIYSSDEGRV
Sbjct: 492 LMVLKY--GGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRV 549
Query: 532 QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKM 591
QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNAS EMEEAKARLNEII S +K
Sbjct: 550 QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEEAKARLNEIITSSTKA 609
Query: 592 IHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNPYDVI 651
+SN S + PWM DG GLPPNASELLP+LVKLTKKVTEQVR LAKDEDE+L ET+ Y+VI
Sbjct: 610 ANSNESPEFPWMTDGAGLPPNASELLPELVKLTKKVTEQVRLLAKDEDEELTETSSYNVI 669
Query: 652 PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV 711
PPYDQAKALGK NIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERK+RFDITQIPDV
Sbjct: 670 PPYDQAKALGKINIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKDRFDITQIPDV 729
Query: 712 YDSCK 716
YDSCK
Sbjct: 730 YDSCK 734
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080003|ref|XP_002305988.1| predicted protein [Populus trichocarpa] gi|222848952|gb|EEE86499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/741 (81%), Positives = 650/741 (87%), Gaps = 41/741 (5%)
Query: 6 KITIGVCVMEKKV------FSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDC 59
KI IGVCVMEKKV SAPMGQIL+RLQAFGEFEVIHFGDKVILEDPIE WPICDC
Sbjct: 11 KIKIGVCVMEKKVKCGFELLSAPMGQILERLQAFGEFEVIHFGDKVILEDPIENWPICDC 70
Query: 60 LIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNR 119
LIAFYSSGYPLEKAE+YATLRKPFLVNELEPQHLLHDRRKVYE+LE +GIPVPRYALVNR
Sbjct: 71 LIAFYSSGYPLEKAEAYATLRKPFLVNELEPQHLLHDRRKVYERLEMFGIPVPRYALVNR 130
Query: 120 EVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG 179
E PYQELD F EEEDFVEVHG+RFWKPFVEKPV GDDHSIMIYYPSSAGGGMKELFRKVG
Sbjct: 131 EFPYQELDCFFEEEDFVEVHGSRFWKPFVEKPVDGDDHSIMIYYPSSAGGGMKELFRKVG 190
Query: 180 NRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP 239
NRSSEFHP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP
Sbjct: 191 NRSSEFHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP 250
Query: 240 DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY 299
DGKEVRYPVLLTPNEKQMAR+VCIAF QAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY
Sbjct: 251 DGKEVRYPVLLTPNEKQMARDVCIAFSQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY 310
Query: 300 DDAACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRC 358
DDAACVLRK+ L+AKAPHLSSAIPP LPWKVNEPVQP+EGLTRQGSG +GTFGQSEELRC
Sbjct: 311 DDAACVLRKLLLDAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIIGTFGQSEELRC 370
Query: 359 VIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILV 418
VIA++RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPR+ETKLKSAVQLQDLLDATRILV
Sbjct: 371 VIAIIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRSETKLKSAVQLQDLLDATRILV 430
Query: 419 PRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQ----------------- 460
PR+RPGRESDSEAEDFEH++K A+L GG F + VQ
Sbjct: 431 PRTRPGRESDSEAEDFEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKVPKSNGEGE 490
Query: 461 -----DVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHS 515
+ L+ ++ +L + Q + + +++++N + G EGTGLLRLHS
Sbjct: 491 EERPVEALMVLKYGGVLTHAGRKQAEE--LGRYFRNN------MYPG---EGTGLLRLHS 539
Query: 516 TYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEME 575
TYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG LTPILVSLVSKDSSMLDGLDNASIEME
Sbjct: 540 TYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGPLTPILVSLVSKDSSMLDGLDNASIEME 599
Query: 576 EAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLA 635
EAKARLNEII S +K+++SNGSS+ PWM DG GLP NASELLP LVKLTKKVTEQVR LA
Sbjct: 600 EAKARLNEIITSVAKIVNSNGSSEFPWMTDGAGLPSNASELLPNLVKLTKKVTEQVRLLA 659
Query: 636 KDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDL 695
DEDE+L ET+ YDVIPPYDQAKALGKTNID+DRIAAGLPCGSEGFLLMYARW+KLERDL
Sbjct: 660 MDEDEELTETSSYDVIPPYDQAKALGKTNIDIDRIAAGLPCGSEGFLLMYARWKKLERDL 719
Query: 696 YNERKERFDITQIPDVYDSCK 716
YNERKERFDITQIPD+YDSCK
Sbjct: 720 YNERKERFDITQIPDIYDSCK 740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488777|ref|XP_002282227.2| PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/738 (81%), Positives = 651/738 (88%), Gaps = 36/738 (4%)
Query: 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIA 62
V KKI +GVCVMEKKVFSAPMGQIL+RLQAFGEFE+I FGDKVILEDP+E WPICDCL+A
Sbjct: 8 VGKKIAVGVCVMEKKVFSAPMGQILERLQAFGEFEIIIFGDKVILEDPVESWPICDCLVA 67
Query: 63 FYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122
FYSSGYPLEKAE+YA LRKPFLVNELE QHLLHDRRKVYE LE YGIP+PRYALVNREVP
Sbjct: 68 FYSSGYPLEKAEAYAALRKPFLVNELEQQHLLHDRRKVYECLEMYGIPIPRYALVNREVP 127
Query: 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRS 182
QELDYF+EEEDFVEVHGNRFWKPFVEKPV GDDHSIMIYYPSSAGGGMKELFRKVGNRS
Sbjct: 128 CQELDYFVEEEDFVEVHGNRFWKPFVEKPVDGDDHSIMIYYPSSAGGGMKELFRKVGNRS 187
Query: 183 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242
SEFHP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK
Sbjct: 188 SEFHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 247
Query: 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302
EVRYPVLLTP EKQMAR+VC+AFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS+KYYDDA
Sbjct: 248 EVRYPVLLTPTEKQMARDVCLAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSHKYYDDA 307
Query: 303 ACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIA 361
ACVLRKMF++AKAPHLSS IPP LPWKVNEP+QP+EGLTRQGSG +GTFGQSEELRCVI
Sbjct: 308 ACVLRKMFIDAKAPHLSSTIPPTLPWKVNEPLQPSEGLTRQGSGIIGTFGQSEELRCVIT 367
Query: 362 VMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRS 421
++RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPR+ETKLKSA+QLQDLLDATR+LVPR+
Sbjct: 368 IIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRSETKLKSAIQLQDLLDATRMLVPRT 427
Query: 422 RPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFF-NVQ-------------------- 460
RPGRESDSEAED EH++K A+L GG F + VQ
Sbjct: 428 RPGRESDSEAEDLEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKVPKSNGEGEEER 487
Query: 461 --DVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYR 518
+ L+ ++ +L + Q + + +++++N + G EGTGLLRLHSTYR
Sbjct: 488 PVEALMVLKYGGVLTHAGRKQAEE--LGRYFRNN------MYPG---EGTGLLRLHSTYR 536
Query: 519 HDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAK 578
HDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAK
Sbjct: 537 HDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAK 596
Query: 579 ARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDE 638
ARLNEII SG+K H+NGSSD PWM DG GLP NASELLPKLVKLTKKVTEQVR LAKDE
Sbjct: 597 ARLNEIITSGAKN-HTNGSSDVPWMTDGGGLPSNASELLPKLVKLTKKVTEQVRLLAKDE 655
Query: 639 DEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNE 698
DE+L+ T+ YDVIPPYD+AKALGKTNIDVDRIAAGLPCGSEGFLLM+ARWRKLERDLYNE
Sbjct: 656 DENLSVTSSYDVIPPYDEAKALGKTNIDVDRIAAGLPCGSEGFLLMFARWRKLERDLYNE 715
Query: 699 RKERFDITQIPDVYDSCK 716
RK+RFDITQIPDVYDSCK
Sbjct: 716 RKDRFDITQIPDVYDSCK 733
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568616|ref|XP_003552506.1| PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/725 (82%), Positives = 638/725 (88%), Gaps = 14/725 (1%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
+KITIGVCVMEKK+FSAPM QIL RLQAFGEFEV+HFGDKVILE+PIE WP+CDCLIAF+
Sbjct: 14 QKITIGVCVMEKKLFSAPMEQILQRLQAFGEFEVVHFGDKVILEEPIESWPVCDCLIAFH 73
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
SSGYP+EKAE+YA LRKPFLVNELEPQHLLHDRRKVYE LEK+GI VPRYALVNREVPYQ
Sbjct: 74 SSGYPMEKAEAYAALRKPFLVNELEPQHLLHDRRKVYECLEKFGIHVPRYALVNREVPYQ 133
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
LDYFIEEEDFVEVHG RFWKPFVEKP+ GD+HSIMIYYPSSAGGGMKELFRKVGNRSSE
Sbjct: 134 HLDYFIEEEDFVEVHGMRFWKPFVEKPIDGDNHSIMIYYPSSAGGGMKELFRKVGNRSSE 193
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
FHP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV
Sbjct: 194 FHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 253
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPVLLTP EK+MAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS+KYYDDAAC
Sbjct: 254 RYPVLLTPAEKEMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSHKYYDDAAC 313
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIAVM 363
VLRKMFL+AKAPHLSSAIPP LPWKVNEPVQP+EGLTRQGSG +GTFGQSEELRCVIAV+
Sbjct: 314 VLRKMFLDAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIIGTFGQSEELRCVIAVI 373
Query: 364 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATR+LVPR+RP
Sbjct: 374 RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRMLVPRTRP 433
Query: 424 GRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDF 483
RESDSEAE EH++K A+L GG F + + + +N +
Sbjct: 434 DRESDSEAE-VEHTEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIKVAKSNGEGEEERPV 492
Query: 484 LIEQFYQDNGV---------NEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSSDEGRV 531
+ GV E+ ++ ++ EGTGLLRLHSTYRHDLKIYSSDEGRV
Sbjct: 493 QALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRV 552
Query: 532 QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKM 591
QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEII S SK
Sbjct: 553 QMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIITSSSKT 612
Query: 592 IHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNPYDVI 651
I++NGS + WM DG GLPPNASELLPKLV L KKVTEQVR LA DEDE LAE + YDVI
Sbjct: 613 IYNNGSPEFSWMVDGAGLPPNASELLPKLVSLIKKVTEQVRLLATDEDEKLAEKSLYDVI 672
Query: 652 PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV 711
PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARW+KLERDLYNERKERFDITQIPDV
Sbjct: 673 PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWKKLERDLYNERKERFDITQIPDV 732
Query: 712 YDSCK 716
YDSCK
Sbjct: 733 YDSCK 737
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140923|ref|XP_002323826.1| predicted protein [Populus trichocarpa] gi|222866828|gb|EEF03959.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/729 (81%), Positives = 642/729 (88%), Gaps = 37/729 (5%)
Query: 14 MEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKA 73
MEKKV SAPMGQILDRLQAFGEFEV++FGDKVILEDPIE WPICDCLIAFYS+GYPLEKA
Sbjct: 1 MEKKVLSAPMGQILDRLQAFGEFEVMYFGDKVILEDPIESWPICDCLIAFYSTGYPLEKA 60
Query: 74 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133
E+YATLRKPFLVNEL PQHLLHDRRKVYE+ E +GIPVPRYALVNRE P+QELDYFIEEE
Sbjct: 61 EAYATLRKPFLVNELVPQHLLHDRRKVYERAEMFGIPVPRYALVNREFPFQELDYFIEEE 120
Query: 134 DFVEVHGNRFWKPFVEKPV-HGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV 192
DFVEVHG+RFWKPFVEKPV GDDHSIMIYYPS+AGGGMKELFRKVGNRSS+FH DVRRV
Sbjct: 121 DFVEVHGSRFWKPFVEKPVDEGDDHSIMIYYPSAAGGGMKELFRKVGNRSSDFHQDVRRV 180
Query: 193 RREGSYIYEEFMPTGGTDVK-VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT 251
RREGSYIYEEFMPTGGTDVK VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT
Sbjct: 181 RREGSYIYEEFMPTGGTDVKVVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT 240
Query: 252 PNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFL 311
PNEKQMAR+VCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDD+ACVLRKM L
Sbjct: 241 PNEKQMARDVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDSACVLRKMLL 300
Query: 312 EAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIAVMRHGDRTP 370
+AKAPHLSSAIPP LPWKVNEPVQP+EGLTRQGSG +G FGQSEELRCVIA++RHGDRTP
Sbjct: 301 DAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIIGRFGQSEELRCVIAIIRHGDRTP 360
Query: 371 KQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSE 430
KQKVKLKVTEEKLLNLMLKYNGGRPR+ETKLKSAVQLQDLLDATRILVPR+RPGRESDSE
Sbjct: 361 KQKVKLKVTEEKLLNLMLKYNGGRPRSETKLKSAVQLQDLLDATRILVPRTRPGRESDSE 420
Query: 431 AEDFEHSKKRIICVAILHLGGQFEKFF-NVQ----------------------DVLLSIQ 467
AEDFEH++K A+L GG F + VQ + L+ ++
Sbjct: 421 AEDFEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKVPKSNGEGEEERPVEALMVLK 480
Query: 468 CHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSD 527
+L + Q + + +++++N + G EGTGLLRLHSTYRHDLKIYSSD
Sbjct: 481 YGGVLTHAGRKQAEE--LGRYFRNN------MYPG---EGTGLLRLHSTYRHDLKIYSSD 529
Query: 528 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKS 587
EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNAS EMEEAKARLNEII S
Sbjct: 530 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEEAKARLNEIITS 589
Query: 588 GSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNP 647
+K++HSNGSS+CPWM DG GLP NASELLPKLV LTKKVTEQVR LAKDEDE+L ET+
Sbjct: 590 AAKIVHSNGSSECPWMTDGAGLPSNASELLPKLVTLTKKVTEQVRLLAKDEDEELTETSS 649
Query: 648 YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQ 707
Y+VIPPYDQAKALGK NID+DRIAAGLPCGSEGFLLMYARW+KLERDLYNERK RFDITQ
Sbjct: 650 YEVIPPYDQAKALGKINIDIDRIAAGLPCGSEGFLLMYARWKKLERDLYNERKVRFDITQ 709
Query: 708 IPDVYDSCK 716
IPDVYDSCK
Sbjct: 710 IPDVYDSCK 718
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529953|ref|XP_003533550.1| PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/731 (81%), Positives = 636/731 (87%), Gaps = 20/731 (2%)
Query: 5 KKITIGVCVMEKKV------FSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICD 58
++ITIGVCVMEKKV FS PM QIL RLQAFGEFEV+HFGDKVILE+PIE WP+CD
Sbjct: 14 QRITIGVCVMEKKVKCGYELFSGPMEQILQRLQAFGEFEVVHFGDKVILEEPIESWPVCD 73
Query: 59 CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 118
CLIAF+SSGYPLEKAE+YA LRKPFLVNELEPQHLLHDRRKVYE LEK+GI VPRYALVN
Sbjct: 74 CLIAFHSSGYPLEKAEAYAALRKPFLVNELEPQHLLHDRRKVYEHLEKFGIHVPRYALVN 133
Query: 119 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178
REVPYQ LDYFIEEEDFVEVHG RFWKPFVEKP+ GD+HSIMIYYPSSAGGGMKELFRKV
Sbjct: 134 REVPYQHLDYFIEEEDFVEVHGMRFWKPFVEKPIDGDNHSIMIYYPSSAGGGMKELFRKV 193
Query: 179 GNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 238
GNRSSEFHP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN
Sbjct: 194 GNRSSEFHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 253
Query: 239 PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKY 298
DGKEVRYPVLLTP EK+MAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS+KY
Sbjct: 254 TDGKEVRYPVLLTPAEKEMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSHKY 313
Query: 299 YDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGL-GTFGQSEELR 357
YDDAACVLRKMF +AKAPHLSSAIPP LPWKVNEPVQP+EGLTRQGSG+ GTFGQSEELR
Sbjct: 314 YDDAACVLRKMFFDAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIVGTFGQSEELR 373
Query: 358 CVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRIL 417
CVIAV+RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATR+L
Sbjct: 374 CVIAVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRML 433
Query: 418 VPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDV--LLSIQCHLLLANL 475
VPR+RP RESDSEAE EH++K A+L GG F + + L I+
Sbjct: 434 VPRTRPDRESDSEAE-VEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIKVAKSNGEG 492
Query: 476 VSGQFIDFLIEQFYQD-------NGVNEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYS 525
+ ++ L+ Y E+ ++ ++ EGTGLLRLHSTYRHDLKIYS
Sbjct: 493 AEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYS 552
Query: 526 SDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEII 585
SDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEII
Sbjct: 553 SDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEII 612
Query: 586 KSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAET 645
S SK IH+N S + WM DG GLPPNASELLPKLV L KKVTEQVR LA DEDE LAE
Sbjct: 613 TSSSKTIHNNESPEFSWMVDGAGLPPNASELLPKLVSLIKKVTEQVRLLATDEDEKLAEK 672
Query: 646 NPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDI 705
+ YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARW+KLERDLYNERKERFDI
Sbjct: 673 SLYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWKKLERDLYNERKERFDI 732
Query: 706 TQIPDVYDSCK 716
TQIPDVYDSCK
Sbjct: 733 TQIPDVYDSCK 743
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501599|ref|XP_003621088.1| Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase [Medicago truncatula] gi|355496103|gb|AES77306.1| Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1198 bits (3099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/724 (82%), Positives = 636/724 (87%), Gaps = 14/724 (1%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
K+ IGVCVMEKKV SAPM QIL RLQAFGEFEV HFGDKVILE+PIE WPI DCLIAF+S
Sbjct: 13 KVKIGVCVMEKKVSSAPMEQILQRLQAFGEFEVTHFGDKVILEEPIESWPIVDCLIAFHS 72
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
SGYPLEKAE+YA LRKPFLVNELEPQHLLHDRRKVYE+LE +GI VPRYALVNREVPYQ+
Sbjct: 73 SGYPLEKAEAYAALRKPFLVNELEPQHLLHDRRKVYERLEMFGIHVPRYALVNREVPYQQ 132
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
LDYFIEEEDFVEVHG RFWKPFVEKP+ GD+HSIMIYYPSSAGGGMKELFRKVGNRSSEF
Sbjct: 133 LDYFIEEEDFVEVHGMRFWKPFVEKPIDGDNHSIMIYYPSSAGGGMKELFRKVGNRSSEF 192
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
HP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR
Sbjct: 193 HPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 252
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPVLLTP EKQMAREVCIAFRQ+VCGFDLLRCEGRSYVCDVNGWSFVKNS+KYYDDAACV
Sbjct: 253 YPVLLTPAEKQMAREVCIAFRQSVCGFDLLRCEGRSYVCDVNGWSFVKNSHKYYDDAACV 312
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIAVMR 364
LRKMFL+AKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG +GTFGQSEELRCVIAV+R
Sbjct: 313 LRKMFLDAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGIIGTFGQSEELRCVIAVIR 372
Query: 365 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPG 424
HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATR+LVPR+RP
Sbjct: 373 HGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRMLVPRTRPD 432
Query: 425 RESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDV--LLSIQCHLLLANLVSGQFID 482
RESDSEAE EH +K A+L GG F + + L I+ + ++
Sbjct: 433 RESDSEAEG-EHGEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIKVAKSNGEGEEERPVE 491
Query: 483 FLIEQFYQD-------NGVNEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSSDEGRVQ 532
L+ Y E+ ++ ++ EGTGLLRLHSTYRHDLKIYSSDEGRVQ
Sbjct: 492 ALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQ 551
Query: 533 MSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMI 592
MSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEM+EAKARLNEII S SK +
Sbjct: 552 MSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMKEAKARLNEIITSSSKTV 611
Query: 593 HSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNPYDVIP 652
HS+ S + WM DG GLPPNASELLPKLV L KKVTEQVR LAKDE+E L ET+ YDVIP
Sbjct: 612 HSDESPEFSWMVDGAGLPPNASELLPKLVSLIKKVTEQVRILAKDENEKLTETSLYDVIP 671
Query: 653 PYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVY 712
PYDQA+ALGKTNIDVDRIA+GLPCGSEGFLLMYARW+KLERDLYNERKERFDITQIPDVY
Sbjct: 672 PYDQARALGKTNIDVDRIASGLPCGSEGFLLMYARWKKLERDLYNERKERFDITQIPDVY 731
Query: 713 DSCK 716
DSCK
Sbjct: 732 DSCK 735
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124359918|gb|ABN07938.1| Histidine acid phosphatase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/730 (81%), Positives = 636/730 (87%), Gaps = 20/730 (2%)
Query: 6 KITIGVCVMEKKV------FSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDC 59
K+ IGVCVMEKKV SAPM QIL RLQAFGEFEV HFGDKVILE+PIE WPI DC
Sbjct: 13 KVKIGVCVMEKKVKCGFEVSSAPMEQILQRLQAFGEFEVTHFGDKVILEEPIESWPIVDC 72
Query: 60 LIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNR 119
LIAF+SSGYPLEKAE+YA LRKPFLVNELEPQHLLHDRRKVYE+LE +GI VPRYALVNR
Sbjct: 73 LIAFHSSGYPLEKAEAYAALRKPFLVNELEPQHLLHDRRKVYERLEMFGIHVPRYALVNR 132
Query: 120 EVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG 179
EVPYQ+LDYFIEEEDFVEVHG RFWKPFVEKP+ GD+HSIMIYYPSSAGGGMKELFRKVG
Sbjct: 133 EVPYQQLDYFIEEEDFVEVHGMRFWKPFVEKPIDGDNHSIMIYYPSSAGGGMKELFRKVG 192
Query: 180 NRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP 239
NRSSEFHP+VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP
Sbjct: 193 NRSSEFHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP 252
Query: 240 DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY 299
DGKEVRYPVLLTP EKQMAREVCIAFRQ+VCGFDLLRCEGRSYVCDVNGWSFVKNS+KYY
Sbjct: 253 DGKEVRYPVLLTPAEKQMAREVCIAFRQSVCGFDLLRCEGRSYVCDVNGWSFVKNSHKYY 312
Query: 300 DDAACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRC 358
DDAACVLRKMFL+AKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG +GTFGQSEELRC
Sbjct: 313 DDAACVLRKMFLDAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGIIGTFGQSEELRC 372
Query: 359 VIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILV 418
VIAV+RHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATR+LV
Sbjct: 373 VIAVIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRMLV 432
Query: 419 PRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQDV--LLSIQCHLLLANLV 476
PR+RP RESDSEAE EH +K A+L GG F + + L I+
Sbjct: 433 PRTRPDRESDSEAEG-EHGEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWIKVAKSNGEGE 491
Query: 477 SGQFIDFLIEQFYQD-------NGVNEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSS 526
+ ++ L+ Y E+ ++ ++ EGTGLLRLHSTYRHDLKIYSS
Sbjct: 492 EERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSS 551
Query: 527 DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIK 586
DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEM+EAKARLNEII
Sbjct: 552 DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMKEAKARLNEIIT 611
Query: 587 SGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETN 646
S SK +HS+ S + WM DG GLPPNASELLPKLV L KKVTEQVR LAKDE+E L ET+
Sbjct: 612 SSSKTVHSDESPEFSWMVDGAGLPPNASELLPKLVSLIKKVTEQVRILAKDENEKLTETS 671
Query: 647 PYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDIT 706
YDVIPPYDQA+ALGKTNIDVDRIA+GLPCGSEGFLLMYARW+KLERDLYNERKERFDIT
Sbjct: 672 LYDVIPPYDQARALGKTNIDVDRIASGLPCGSEGFLLMYARWKKLERDLYNERKERFDIT 731
Query: 707 QIPDVYDSCK 716
QIPDVYDSCK
Sbjct: 732 QIPDVYDSCK 741
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187693|ref|NP_001190313.1| phosphoglycerate mutase-like protein [Arabidopsis thaliana] gi|332004730|gb|AED92113.1| phosphoglycerate mutase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/729 (79%), Positives = 636/729 (87%), Gaps = 18/729 (2%)
Query: 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIA 62
V KKITIGVCVMEKKVFSAPMGQI+DR+ AFGEFE+IHFGDKVILEDP+E WPICDCLIA
Sbjct: 9 VDKKITIGVCVMEKKVFSAPMGQIMDRIHAFGEFEIIHFGDKVILEDPVESWPICDCLIA 68
Query: 63 FYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122
FYSSGYPLEK ++Y++LRKPFLVNEL+PQ+LLHDRRKVYE LE YGIPVPRYA VNR+VP
Sbjct: 69 FYSSGYPLEKVQAYSSLRKPFLVNELDPQYLLHDRRKVYEHLEMYGIPVPRYACVNRKVP 128
Query: 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRS 182
++LDYF+EEEDFVEV G RFWKPFVEKPV+GDDHSIMIYYPSSAGGGMKELFRKVGNRS
Sbjct: 129 DEDLDYFVEEEDFVEVKGERFWKPFVEKPVNGDDHSIMIYYPSSAGGGMKELFRKVGNRS 188
Query: 183 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242
SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK
Sbjct: 189 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 248
Query: 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302
EVRYPVLLTP EKQMAREVCIAFRQAVCGFDLLR EG SYVCDVNGWSFVKNSYKYYDDA
Sbjct: 249 EVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDA 308
Query: 303 ACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIA 361
ACVLRKMFL+AKAPHLSS IPPILPWK+NEPVQ EGLTRQGSG +GTFGQSEELRCVIA
Sbjct: 309 ACVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIA 368
Query: 362 VMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRS 421
++RHGDRTPKQKVKLKVTEEKLLNLMLKYNGG+PRAETKLK+AVQLQDLLDATR+L+PR+
Sbjct: 369 IVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRA 428
Query: 422 RPGRESDSEAEDFEHSKKRIICVAILHLGGQFE-----------KFFNVQDVLLSIQCHL 470
R G ESDS+AED EH+ K A+L GG F K+ NV +
Sbjct: 429 RSG-ESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEER 487
Query: 471 LLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSSD 527
+ L+ ++ L + E+ ++ ++ EGTGLLRLHSTYRHDLKIYSSD
Sbjct: 488 PVEALMVLKYGGVLTHAGRKQ--AEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSD 545
Query: 528 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKS 587
EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNAS EME AKA+LNEII +
Sbjct: 546 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEAAKAQLNEIITA 605
Query: 588 GSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNP 647
GSKM+H + SS+ PWM DG GLPP+A E LP+LVKL KKVTEQVR LA+DE E+LAE +
Sbjct: 606 GSKMVHDHVSSELPWMTDGAGLPPHADEHLPELVKLAKKVTEQVRLLAQDEHENLAEPSA 665
Query: 648 YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQ 707
YDV+PPYDQAKALGK+NIDV RIAAGLPCGSEGFLLM+ARWRKLERDLYNER+ERFDITQ
Sbjct: 666 YDVVPPYDQAKALGKSNIDVGRIAAGLPCGSEGFLLMFARWRKLERDLYNERRERFDITQ 725
Query: 708 IPDVYDSCK 716
IPDVYDSCK
Sbjct: 726 IPDVYDSCK 734
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417557|ref|NP_568308.1| phosphoglycerate mutase-like protein [Arabidopsis thaliana] gi|25054864|gb|AAN71921.1| unknown protein [Arabidopsis thaliana] gi|332004729|gb|AED92112.1| phosphoglycerate mutase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/729 (79%), Positives = 636/729 (87%), Gaps = 18/729 (2%)
Query: 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIA 62
V KKITIGVCVMEKKVFSAPMGQI+DR+ AFGEFE+IHFGDKVILEDP+E WPICDCLIA
Sbjct: 9 VDKKITIGVCVMEKKVFSAPMGQIMDRIHAFGEFEIIHFGDKVILEDPVESWPICDCLIA 68
Query: 63 FYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122
FYSSGYPLEK ++Y++LRKPFLVNEL+PQ+LLHDRRKVYE LE YGIPVPRYA VNR+VP
Sbjct: 69 FYSSGYPLEKVQAYSSLRKPFLVNELDPQYLLHDRRKVYEHLEMYGIPVPRYACVNRKVP 128
Query: 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRS 182
++LDYF+EEEDFVEV G RFWKPFVEKPV+GDDHSIMIYYPSSAGGGMKELFRKVGNRS
Sbjct: 129 DEDLDYFVEEEDFVEVKGERFWKPFVEKPVNGDDHSIMIYYPSSAGGGMKELFRKVGNRS 188
Query: 183 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242
SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK
Sbjct: 189 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 248
Query: 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302
EVRYPVLLTP EKQMAREVCIAFRQAVCGFDLLR EG SYVCDVNGWSFVKNSYKYYDDA
Sbjct: 249 EVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDA 308
Query: 303 ACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSG-LGTFGQSEELRCVIA 361
ACVLRKMFL+AKAPHLSS IPPILPWK+NEPVQ EGLTRQGSG +GTFGQSEELRCVIA
Sbjct: 309 ACVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIA 368
Query: 362 VMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRS 421
++RHGDRTPKQKVKLKVTEEKLLNLMLKYNGG+PRAETKLK+AVQLQDLLDATR+L+PR+
Sbjct: 369 IVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRA 428
Query: 422 RPGRESDSEAEDFEHSKKRIICVAILHLGGQFE-----------KFFNVQDVLLSIQCHL 470
R G ESDS+AED EH+ K A+L GG F K+ NV +
Sbjct: 429 RSG-ESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEER 487
Query: 471 LLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSH---SEGTGLLRLHSTYRHDLKIYSSD 527
+ L+ ++ L + E+ ++ ++ EGTGLLRLHSTYRHDLKIYSSD
Sbjct: 488 PVEALMVLKYGGVLTHAGRKQ--AEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSD 545
Query: 528 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKS 587
EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNAS EME AKA+LNEII +
Sbjct: 546 EGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEAAKAQLNEIITA 605
Query: 588 GSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNP 647
GSKM+H + SS+ PWM DG GLPP+A E LP+LVKL KKVTEQVR LA+DE E+LAE +
Sbjct: 606 GSKMVHDHVSSELPWMTDGAGLPPHADEHLPELVKLAKKVTEQVRLLAQDEHENLAEPSA 665
Query: 648 YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQ 707
YDV+PPYDQAKALGK+NIDV RIAAGLPCGSEGFLLM+ARWRKLERDLYNER+ERFDITQ
Sbjct: 666 YDVVPPYDQAKALGKSNIDVGRIAAGLPCGSEGFLLMFARWRKLERDLYNERRERFDITQ 725
Query: 708 IPDVYDSCK 716
IPDVYDSCK
Sbjct: 726 IPDVYDSCK 734
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 716 | ||||||
| TAIR|locus:2102057 | 1056 | AT3G01310 [Arabidopsis thalian | 0.991 | 0.672 | 0.761 | 2.9e-293 | |
| UNIPROTKB|E1BXR8 | 1179 | PPIP5K1 "Uncharacterized prote | 0.575 | 0.349 | 0.527 | 6.3e-146 | |
| MGI|MGI:2443281 | 1436 | Ppip5k1 "diphosphoinositol pen | 0.599 | 0.298 | 0.516 | 2.7e-145 | |
| UNIPROTKB|A7Z050 | 1477 | PPIP5K1 "Inositol hexakisphosp | 0.583 | 0.283 | 0.522 | 4.4e-145 | |
| RGD|1311552 | 1434 | Ppip5k1 "diphosphoinositol pen | 0.583 | 0.291 | 0.522 | 4.4e-145 | |
| UNIPROTKB|D4A214 | 1413 | Hisppd2a "Protein Hisppd2a" [R | 0.583 | 0.295 | 0.522 | 4.4e-145 | |
| UNIPROTKB|P0C644 | 1434 | Ppip5k1 "Inositol hexakisphosp | 0.583 | 0.291 | 0.522 | 4.4e-145 | |
| UNIPROTKB|J9NS35 | 1528 | PPIP5K1 "Uncharacterized prote | 0.583 | 0.273 | 0.522 | 5.6e-145 | |
| UNIPROTKB|J9P7K0 | 1406 | PPIP5K1 "Uncharacterized prote | 0.583 | 0.297 | 0.522 | 5.6e-145 | |
| UNIPROTKB|B7WPL9 | 1429 | PPIP5K1 "Inositol hexakisphosp | 0.583 | 0.292 | 0.520 | 9e-145 |
| TAIR|locus:2102057 AT3G01310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2816 (996.3 bits), Expect = 2.9e-293, P = 2.9e-293
Identities = 561/737 (76%), Positives = 609/737 (82%)
Query: 3 VHKKITIGVCVMEKKV------FSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPI 56
V +KI IGVCVMEKKV FSAPMG+ILDRLQ+FGEFE++HFGDKVILEDPIE WPI
Sbjct: 10 VGEKIKIGVCVMEKKVKCGSEVFSAPMGEILDRLQSFGEFEILHFGDKVILEDPIESWPI 69
Query: 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL 116
CDCLIAF+SSGYPLEKA++YA LRKPFLVNEL+PQ+LLHDRRKVYE LE YGIPVPRYA
Sbjct: 70 CDCLIAFHSSGYPLEKAQAYAALRKPFLVNELDPQYLLHDRRKVYEHLEMYGIPVPRYAC 129
Query: 117 VNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176
VNR+VP Q+L YF+EEEDFVEVHG RFWKPFVEKPV+GDDHSIMIYYPSSAGGGMKELFR
Sbjct: 130 VNRKVPNQDLHYFVEEEDFVEVHGERFWKPFVEKPVNGDDHSIMIYYPSSAGGGMKELFR 189
Query: 177 KVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236
K+GNRSSEFHPDVRRVRREGSYIYEEFM TGGTDVKVYTVGPEYAHAEARKSPVVDGVVM
Sbjct: 190 KIGNRSSEFHPDVRRVRREGSYIYEEFMATGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 249
Query: 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296
RN DGKEVRYPVLLTP EKQMAREVCIAFRQAVCGFDLLR EG SYVCDVNGWSFVKNSY
Sbjct: 250 RNTDGKEVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGCSYVCDVNGWSFVKNSY 309
Query: 297 KYYDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGL-GTFGQSEE 355
KYYDDAACVLRKM L+AKAPHLSS +PP LPWKVNEPVQ EGLTRQGSG+ GTFGQSEE
Sbjct: 310 KYYDDAACVLRKMCLDAKAPHLSSTLPPTLPWKVNEPVQSNEGLTRQGSGIIGTFGQSEE 369
Query: 356 LRCVIAVMRHGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATR 415
LRCVIAV+RHGDRTPKQ MLKYNGG+PRAETKLKSAVQLQDLLDATR
Sbjct: 370 LRCVIAVVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATR 429
Query: 416 ILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLAN 474
+LVPR+RPGRESDS+AED EH++K A+L GG F + VQ L ++ + +
Sbjct: 430 MLVPRTRPGRESDSDAEDLEHAEKLRQVKAVLEEGGHFSGIYRKVQ--LKPLKWVKIPKS 487
Query: 475 LVSGQF---IDFLIEQFYQD-------NGVNEIAYWWGSH---SEGTGLLRLHSTYRHDL 521
G+ ++ L+ Y E+ ++ ++ EGTGLLRLHSTYRHDL
Sbjct: 488 DGDGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDL 547
Query: 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARL 581
KIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEME AKARL
Sbjct: 548 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEAAKARL 607
Query: 582 NEIIKSGSKMIHSN--GSSDCPWMADGVGLPPNASEXXXXXXXXXXXXXEQVRQLAKDED 639
NEI+ SG+KMI + S D PWM DG GLPPNA E EQVR LA DED
Sbjct: 608 NEIVTSGTKMIDDDQVSSEDFPWMTDGAGLPPNAHELLRELVKLTKNVTEQVRLLAMDED 667
Query: 640 EDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNER 699
E+L E PYD+IPPYDQAKALGKTNID DRIA+GLPCGSEGFLLM+ARW KL RDLYNER
Sbjct: 668 ENLTE--PYDIIPPYDQAKALGKTNIDSDRIASGLPCGSEGFLLMFARWIKLARDLYNER 725
Query: 700 KERFDITQIPDVYDSCK 716
K+RFDITQIPDVYDSCK
Sbjct: 726 KDRFDITQIPDVYDSCK 742
|
|
| UNIPROTKB|E1BXR8 PPIP5K1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 6.3e-146, Sum P(3) = 6.3e-146
Identities = 227/430 (52%), Positives = 292/430 (67%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM QIL+RL F V+ G+ +IL +P+E WP CDCLI+F+
Sbjct: 53 RQIVVGICAMTKKSKSKPMTQILERLCKFEYITVVIMGEDIILNEPVENWPPCDCLISFH 112
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA L KPFL+N+L+ Q+ + DRR+VY L++ GI +PRYA++NR+
Sbjct: 113 SKGFPLDKAVAYAKLCKPFLINDLDMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPDRP 172
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
E +E ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 173 EECNLVEGEDHVEVNGAVFPKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 232
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+
Sbjct: 233 YSPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEI 291
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A
Sbjct: 292 RYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAK 351
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVM 363
+L + + AP IP +P + + P+ PT T G ELRCVIAV+
Sbjct: 352 ILGNIIMRELAPQFH--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAVI 398
Query: 364 RHGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRP 423
RHGDRTPKQ KY+G + + KLK QLQ++LD R LV
Sbjct: 399 RHGDRTPKQKMKMEVKHPRFFELFEKYDGYKT-GKLKLKKPEQLQEVLDIARQLVVEL-- 455
Query: 424 GRESDSEAED 433
G SD E E+
Sbjct: 456 GTHSDCEIEE 465
|
|
| MGI|MGI:2443281 Ppip5k1 "diphosphoinositol pentakisphosphate kinase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 2.7e-145, Sum P(3) = 2.7e-145
Identities = 232/449 (51%), Positives = 297/449 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECSLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEVR
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPG 424
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVTHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAEL--- 455
Query: 425 RESDSEAEDFEHSKKRIICVAILHLGGQF 453
E + EAE E + K ++L + G F
Sbjct: 456 -EKEPEAEIEEKTGKLEQLKSVLEMYGHF 483
|
|
| UNIPROTKB|A7Z050 PPIP5K1 "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 4.4e-145, Sum P(3) = 4.4e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F VI G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPMEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVTHPRFFSLFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 459 PGGEIEEKTGKLEQLK 474
|
|
| RGD|1311552 Ppip5k1 "diphosphoinositol pentakisphosphate kinase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 4.4e-145, Sum P(3) = 4.4e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 56 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHS 115
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 116 KGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPE 175
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 176 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 235
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEVR
Sbjct: 236 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 294
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 295 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 354
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 355 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 401
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 402 HGDRTPKQKMKMEVTHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 460
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 461 PGAEIEEKTGKLEQLK 476
|
|
| UNIPROTKB|D4A214 Hisppd2a "Protein Hisppd2a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 4.4e-145, Sum P(3) = 4.4e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 56 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHS 115
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 116 KGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPE 175
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 176 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 235
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEVR
Sbjct: 236 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 294
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 295 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 354
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 355 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 401
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 402 HGDRTPKQKMKMEVTHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 460
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 461 PGAEIEEKTGKLEQLK 476
|
|
| UNIPROTKB|P0C644 Ppip5k1 "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 4.4e-145, Sum P(3) = 4.4e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 56 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHS 115
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 116 KGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPE 175
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 176 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 235
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEVR
Sbjct: 236 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVR 294
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 295 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 354
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 355 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 401
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 402 HGDRTPKQKMKMEVTHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 460
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 461 PGAEIEEKTGKLEQLK 476
|
|
| UNIPROTKB|J9NS35 PPIP5K1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 5.6e-145, Sum P(3) = 5.6e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F VI G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVTHPRFFSLFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 459 PGGEIEEKTGKLEQLK 474
|
|
| UNIPROTKB|J9P7K0 PPIP5K1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 5.6e-145, Sum P(3) = 5.6e-145
Identities = 228/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F VI G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVIILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVTHPRFFSLFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 459 PGGEIEEKTGKLEQLK 474
|
|
| UNIPROTKB|B7WPL9 PPIP5K1 "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 9.0e-145, Sum P(3) = 9.0e-145
Identities = 227/436 (52%), Positives = 290/436 (66%)
Query: 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYS 65
+I +G+C M KK S PM QIL+RL F V+ G+ VIL +P+E WP C CLI+F+S
Sbjct: 54 QIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPSCHCLISFHS 113
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 125
G+PL+KA +Y+ LR PFL+N+L Q+ + DRR+VY L++ GI +PRYA++NR+ E
Sbjct: 114 KGFPLDKAVAYSKLRNPFLINDLAMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPARPE 173
Query: 126 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185
IE ED VEV+G F KPFVEKPV +DH++ IYYPSSAGGG + LFRK+G+RSS +
Sbjct: 174 ECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVY 233
Query: 186 HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKE+R
Sbjct: 234 SPE-SSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEIR 292
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACV 305
YPV+LT EK +AR+VC+AF+Q VCGFDLLR G S+VCDVNG+SFVKNS KYYDD A +
Sbjct: 293 YPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKI 352
Query: 306 LRKMFLEAKAPHLSSAIPPILPWKVNE-PVQPTEGLTRQGSGLGTFGQSEELRCVIAVMR 364
L + AP IP +P + + P+ PT T G ELRCVIA++R
Sbjct: 353 LGNTIMRELAPQFQ--IPWSIPTEAEDIPIVPT-----------TSGTMMELRCVIAIIR 399
Query: 365 HGDRTPKQXXXXXXXXXXXXXXMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPR--SR 422
HGDRTPKQ K+ GG + KLK QLQ++LD TR+L+
Sbjct: 400 HGDRTPKQKMKMEVKHPRFFALFEKH-GGYKTGKLKLKRPEQLQEVLDITRLLLAELEKE 458
Query: 423 PGRESDSEAEDFEHSK 438
PG E + + E K
Sbjct: 459 PGGEIEEKTGKLEQLK 474
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 716 | |||
| pfam00328 | 327 | pfam00328, His_Phos_2, Histidine phosphatase super | 1e-09 | |
| cd07061 | 242 | cd07061, HP_HAP_like, Histidine phosphatase domain | 8e-09 | |
| COG0189 | 318 | COG0189, RimK, Glutathione synthase/Ribosomal prot | 6e-07 | |
| pfam08443 | 190 | pfam08443, RimK, RimK-like ATP-grasp domain | 1e-05 | |
| TIGR00768 | 277 | TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri | 3e-05 | |
| pfam00328 | 327 | pfam00328, His_Phos_2, Histidine phosphatase super | 6e-05 | |
| cd07040 | 153 | cd07040, HP, Histidine phosphatase domain found in | 0.001 |
| >gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2) | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 62/205 (30%)
Query: 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLD 568
GLL ++ I SSD R SA AF GL EG D+ +LD
Sbjct: 73 GLLPDGYPP-SEVYIRSSDSNRTLASAQAFLAGLFPPEG----------DIDNDLLDWQP 121
Query: 569 NASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVT 628
+ + E K L ++ G CP + + K+V
Sbjct: 122 IPVVTLPEVKKALANLLLL--------GYDSCPAFDE---------------SLVEKRVD 158
Query: 629 EQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARW 688
++ +L E +A+ G+TN+ W
Sbjct: 159 PELAKLLAVYLEPIAKRL---------SQLLPGETNLT-----------------GLDVW 192
Query: 689 RKLERDLYNERKERFDITQIPDVYD 713
L+ L+ D + PD++
Sbjct: 193 ALLDLCLFE--TNASDNSPFPDLFT 215
|
The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Length = 327 |
| >gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLD 568
LL LHS R DL I SSD R SA AF GL +G + ++ ++ + + D
Sbjct: 40 ELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFD 99
Query: 569 NASIE 573
+ E
Sbjct: 100 LCAYE 104
|
Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord. Length = 242 |
| >gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 62/296 (20%), Positives = 100/296 (33%), Gaps = 59/296 (19%)
Query: 11 VCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLI-----AFYS 65
+ +++ S G+I + EVI ++I E+ + D +I F
Sbjct: 33 LAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDF 92
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQ--LEKYGIPVPRYALVNREVPY 123
+ L AE ++N+ PQ + R K+Y L K GIPVP +
Sbjct: 93 ATRFLRLAERKGV----PVIND--PQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPD-- 144
Query: 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS 183
E F+ E P V KP+ G S G G+ V +
Sbjct: 145 -EAAEFVAE---------HLGFPVVLKPLDG-----------SGGRGVF----LVEDADP 179
Query: 184 EF--HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG 241
E + I +E++P D + VG V + R P
Sbjct: 180 ELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVG--------GGEVVAIYALARIPAS 231
Query: 242 KEVR---------YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288
+ R P LT E+++A + A + G D++ + YV +VN
Sbjct: 232 GDFRSNLARGGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287
|
Length = 318 |
| >gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155
D+ K ++ L K+GIPVP L + E F+E F P V K V G
Sbjct: 3 DKAKSHQLLAKHGIPVPNTGLAWSPE---------DAEKFIE-QIKGF--PVVVKSVFGS 50
Query: 156 --DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212
+ S + E F+ + N + +EF+ G D++
Sbjct: 51 QGIGVFLAEDEQSLEQLL-EAFKWLKN----------------QILVQEFIAEAGNRDIR 93
Query: 213 VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGF 272
VG E A R+S +G N V P L+ E+++A + A V G
Sbjct: 94 CLVVGGEVVGAIHRQSN--EGDFRTNLHRGGVAEPYQLSQEEEEIAIKAAQAMGLDVLGV 151
Query: 273 DLLRCEGRSYVCDVNGWSFVKNSYKY 298
D+ R + VC+VN +K +
Sbjct: 152 DIFRSKRGLLVCEVNSSPGLKGIERT 177
|
This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK. Length = 190 |
| >gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 63/294 (21%), Positives = 97/294 (32%), Gaps = 66/294 (22%)
Query: 26 ILDRLQAFG-EFEVIHFGDKVI-LEDP---IEKWPICDCLIAFYSSG-YPLEKAESYATL 79
+ + + G +++V+ + + + + + I G ES
Sbjct: 16 LKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGV- 74
Query: 80 RKPFLVNELEPQHLLHDRRKV--YEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
++N +L+ K + L K G+P PR L E IEE F
Sbjct: 75 ---PVINS--SDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE---EALKLIEEIGF-- 124
Query: 138 VHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE 195
P V KPV G + +A + E F ++ + F
Sbjct: 125 --------PVVLKPVFGSWGRLVSLARDKQAAETLL-EHFEQLNGPQNLF---------- 165
Query: 196 GSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD----------GKEVR 245
Y+ E GG D++V+ VG E V + R GK
Sbjct: 166 --YVQEYIKKPGGRDIRVFVVGDE-----------VIAAIYRITSGHWRTNLARGGKAEP 212
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSY-VCDVNGWSFVKNSYKY 298
P LT +++A + A V G DLL E R V +VN KNS K
Sbjct: 213 CP--LTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNPEFKNSVKT 264
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 |
| >gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRP 395
EL V V RHGDRTP + + L K+N
Sbjct: 1 ELEFVQVVSRHGDRTPTKSLPKDPEAWPFKLLSEKHNDFLN 41
|
The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Length = 327 |
| >gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 512 RLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLD 544
L Y +IYSS R +A +GL +
Sbjct: 40 ALRERYIKFDRIYSSPLKRAIQTAEIILEGLFE 72
|
Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed. Length = 153 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 716 | |||
| KOG1057 | 1018 | consensus Arp2/3 complex-interacting protein VIP1/ | 100.0 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.97 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.95 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.94 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.94 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.91 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.91 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.9 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.9 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.88 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.79 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.77 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 99.75 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.72 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.71 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.65 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 99.6 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 99.58 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.56 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 99.53 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 99.49 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.42 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 99.41 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.4 | |
| PF00328 | 347 | His_Phos_2: Histidine phosphatase superfamily (bra | 99.39 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 99.39 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 99.38 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 99.38 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 99.34 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.3 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 99.21 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 99.2 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 99.19 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.19 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 99.16 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 99.16 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 99.07 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 99.06 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 99.05 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 99.04 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 99.03 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 99.01 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.0 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 99.0 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 98.99 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 98.99 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 98.98 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 98.96 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 98.96 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 98.93 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.91 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 98.88 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 98.86 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 98.84 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 98.83 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 98.82 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 98.81 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 98.8 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 98.78 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 98.73 | |
| cd07061 | 242 | HP_HAP_like Histidine phosphatase domain found in | 98.7 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 98.7 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 98.69 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 98.67 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 98.65 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 98.65 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 98.62 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 98.61 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 98.61 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 98.57 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 98.57 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 98.46 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 98.41 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 98.4 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.22 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 97.97 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 97.84 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 97.82 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 97.63 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 97.39 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 97.19 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 97.05 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 96.73 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 96.72 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.4 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.9 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 95.34 | |
| KOG3720 | 411 | consensus Lysosomal & prostatic acid phosphatases | 93.87 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 92.13 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 91.36 | |
| PRK10172 | 436 | phosphoanhydride phosphorylase; Provisional | 91.12 | |
| cd07040 | 153 | HP Histidine phosphatase domain found in a functio | 91.0 | |
| KOG3672 | 487 | consensus Histidine acid phosphatase [General func | 90.51 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 89.56 | |
| KOG1382 | 467 | consensus Multiple inositol polyphosphate phosphat | 88.46 | |
| PRK10173 | 413 | glucose-1-phosphatase/inositol phosphatase; Provis | 87.72 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 86.9 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 84.97 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 83.66 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 83.04 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 81.49 |
| >KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-238 Score=1946.63 Aligned_cols=657 Identities=57% Similarity=0.907 Sum_probs=614.1
Q ss_pred CeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcc
Q 005046 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFL 84 (716)
Q Consensus 5 ~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~ 84 (716)
++|+||||||++|++||||++||+||..+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++||+||+
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPFv 118 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFV 118 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEec
Q 005046 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (716)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp 164 (716)
||||.||+++||||.||+||++.|||+|++.+++|+++++.++++++++|+++|||++|.||||||||+|||||||||||
T Consensus 119 iNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYP 198 (1018)
T KOG1057|consen 119 INDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYP 198 (1018)
T ss_pred eccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEec
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCce
Q 005046 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244 (716)
Q Consensus 165 ~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~ 244 (716)
+++|||.+||||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|+|||+|||||+||+|+||+||||+
T Consensus 199 sSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEv 277 (1018)
T KOG1057|consen 199 SSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEV 277 (1018)
T ss_pred CCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCcee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 005046 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPP 324 (716)
Q Consensus 245 r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~~~~~~~~~~~~~ 324 (716)
||||.||++||.||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++|++.+++++..+.+|+
T Consensus 278 RYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP~ 357 (1018)
T KOG1057|consen 278 RYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIPW 357 (1018)
T ss_pred eceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999898899999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCcceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCCcceeecch
Q 005046 325 ILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSA 404 (716)
Q Consensus 325 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~ 404 (716)
++||...++..+ ..+ .++++++|||||||||||||||||||||++|++++|++||.+|+|++ ++|+|||+|
T Consensus 358 ~~p~~~~~~~~~---~v~-----~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~~ 428 (1018)
T KOG1057|consen 358 SLPGIRNEKVEP---WVP-----TSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKSA 428 (1018)
T ss_pred CCcccccCCCCC---cee-----cCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCCH
Confidence 999987665332 222 34678999999999999999999999999999999999999999865 899999999
Q ss_pred hcHHHHHHHHhhhccCCCCCCCCCcchhhhhchhhHHHHHHHHHcCCCCCccce-eeccccccc------------ceEE
Q 005046 405 VQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQ------------CHLL 471 (716)
Q Consensus 405 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~kl~~l~~vL~~~~~f~G~nr-vQlKp~~~~------------~~~~ 471 (716)
.|||++||++|.++++.+ +.+++++|+..||+||++|||+||||||||| |||||+.|. ++++
T Consensus 429 ~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~~~~k~se~e~~r~~~ll 503 (1018)
T KOG1057|consen 429 NQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKWVYVKKSEGELEREPQLL 503 (1018)
T ss_pred HHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccccCCCCCccccccCccee
Confidence 999999999999997643 3344556678899999999999999999999 999998875 5688
Q ss_pred EEEccCccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcc
Q 005046 472 LANLVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDL 545 (716)
Q Consensus 472 li~KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~l 545 (716)
|||||||||||| ||||+|||++ |||.|+|||||||||||||||||||||||||||||||||||+|
T Consensus 504 liLKwGGelT~agr~QAeeLGr~FR~~~---------~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~l 574 (1018)
T KOG1057|consen 504 LILKWGGELTHAGRYQAEELGRQFRCDY---------PGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLAL 574 (1018)
T ss_pred EEeeeCCEecchhHhhHHHHHHHHHhcC---------CCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhh
Confidence 999999999999 9999999988 8888999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeEecCCcccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcccCCCCCCChhHHHHHHHHHHH
Q 005046 546 EGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK 625 (716)
Q Consensus 546 egeLtPilv~~V~kd~~~ld~~~~a~~~m~~vK~~L~~lL~~~~~~~~~~~~~~~~w~~~~~~~p~~p~~~~~~~~~l~~ 625 (716)
||+|||||||||+||+.|||++|+|++.|++||++||+|||.|.+|+ ++|+||..+ |+|+.++.+++++|+
T Consensus 575 EgelTpiLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~~-----~e~~~~~~~----P~~~~~l~~~ve~vk 645 (1018)
T KOG1057|consen 575 EGELTPILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREFT-----PEFDWPELM----PNPSEVLTQVVELVK 645 (1018)
T ss_pred ccCCcHHHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcCC-----CccchhhcC----CcHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 677999754 589999998888887
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCCCCCchhhhhhcCCcccchhhhccCCCCCCCCHHHHHHHHHHHHHHHhcccCCcccC
Q 005046 626 KVTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDI 705 (716)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~c~~E~~~L~~eRW~KL~~dF~~~k~~kfD~ 705 (716)
.....+++.. +.. . ....++++.+|.+|+|++|+|+||++||+|||+|||+. +++|||
T Consensus 646 ~~~k~~~e~~-------~~~------~--------~~~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~Di 703 (1018)
T KOG1057|consen 646 NPVKVCDENF-------ALI------E--------PLDHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDI 703 (1018)
T ss_pred hHHHHHHHhh-------hcc------c--------cccceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCc
Confidence 6655443321 110 0 12237899999999999999999999999999999975 599999
Q ss_pred CCCCcccccCC
Q 005046 706 TQIPDVYDSCK 716 (716)
Q Consensus 706 SKIpdiYD~iK 716 (716)
|||||||||||
T Consensus 704 SKIpdiYD~~K 714 (1018)
T KOG1057|consen 704 SKIPDIYDTIK 714 (1018)
T ss_pred cccchHHhhhh
Confidence 99999999997
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=280.87 Aligned_cols=255 Identities=22% Similarity=0.252 Sum_probs=204.0
Q ss_pred eecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcH-HHHHHHHHhcCCcccCCchh
Q 005046 12 CVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEP 90 (716)
Q Consensus 12 CaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iNdl~~ 90 (716)
+.++.--++-++..+..+.....-.+++-+..+.+...+...-..+|+++.+-...+.. ..+++.++..|.++||+..+
T Consensus 34 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~ 113 (318)
T COG0189 34 AILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQS 113 (318)
T ss_pred EEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHH
Confidence 33344444555555555544444456777888888888888888999999999999888 88888999999999999999
Q ss_pred hhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCCh
Q 005046 91 QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGG 170 (716)
Q Consensus 91 q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG 170 (716)
...++||..+++.|+++|||+|.|+++..+ ++....-.+.++.|+|+||++|+ .|-|
T Consensus 114 i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~~~~~~~~~~g~pvVlKp~~Gs-----------~G~g 170 (318)
T COG0189 114 IRRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DEAAEFVAEHLGFPVVLKPLDGS-----------GGRG 170 (318)
T ss_pred HHhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEeeCCCC-----------Cccc
Confidence 999999999999999999999999999843 12222233445699999999998 6667
Q ss_pred HHHHHhhhC-CCcccccccccccccC--cceEEeeccCC-CCceeEEEEECCceeE--EEeecCCCCCCceeecCCCCce
Q 005046 171 MKELFRKVG-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEV 244 (716)
Q Consensus 171 ~~rLfrkig-n~sS~~~p~~~~~r~~--gsyIyQEFi~~-~G~DIKvytVG~~~vh--Ae~RKSPv~DG~vrrN~~gke~ 244 (716)
+- +.+.-. +-.+..+ ..... ..+|.||||++ .+.|++|+++|+.+++ |++|.++ .|+||+|.|+|+.
T Consensus 171 V~-~v~~~d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~ 243 (318)
T COG0189 171 VF-LVEDADPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGR 243 (318)
T ss_pred eE-EecCCChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeecccccc
Confidence 64 444332 2222222 33333 46999999999 5677788888888888 8899886 9999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccch
Q 005046 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296 (716)
Q Consensus 245 r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~ 296 (716)
..+++||++++++|.|+|+++|+.+|||||+++++|.||+|||+-+-.|+.-
T Consensus 244 ~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~sP~~~~~i 295 (318)
T COG0189 244 AEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNVSPTGKGEI 295 (318)
T ss_pred ccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeCCCccccch
Confidence 9999999999999999999999999999999999999999999876566653
|
|
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-29 Score=245.75 Aligned_cols=174 Identities=29% Similarity=0.423 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHH
Q 005046 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 94 l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (716)
..||..++++|+++|||+|.|.+++.. + +....+.--+ ++|+|+||+.|. .|-|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~---~------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~- 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP---E------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF- 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH---H------HHHHHHHHH-----SSEEEE-SB------------------E-
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH---H------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-
Confidence 368999999999999999999999843 1 2333443221 499999999997 566664
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP 252 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~ 252 (716)
+++......+..+. ....+..+++||||+. .|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|++
T Consensus 57 ~i~~~~~~~~~l~~---~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~ 131 (190)
T PF08443_consen 57 LINSPDELESLLDA---FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPE 131 (190)
T ss_dssp EEESHCHHHHHHH--------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----H
T ss_pred EecCHHHHHHHHHH---HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCH
Confidence 44444333332221 1235678899999999 56999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccch
Q 005046 253 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296 (716)
Q Consensus 253 eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~ 296 (716)
+++++|.++++++|+++|||||+++++++||||||.++-+++..
T Consensus 132 e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~~ 175 (190)
T PF08443_consen 132 EIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGIE 175 (190)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHHH
Confidence 99999999999999999999999999999999999999887653
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=238.49 Aligned_cols=267 Identities=19% Similarity=0.220 Sum_probs=193.9
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHH-hcCC
Q 005046 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (716)
Q Consensus 4 ~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~-lr~p 82 (716)
.+..+||-|--.||.+|==-..++....+.| ++++--..+- |+++=-.+|++|-....-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3578999888888888866666788777766 5554443332 44322246999887654321234455544 4678
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCC-------CCCCcEEEEecCCCccccccccCcccee--eecCeeecCcEEEeecc
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFV--EVHGNRFWKPFVEKPVH 153 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~g-------IP~P~t~~~~r~~~~~~~~~~~e~~d~I--~v~G~~~~kPfVeKpv~ 153 (716)
.+||.+.++..+.||..++++|+++| ||+|+++++.... ..+ ...-..++.|+|.||+.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~------------~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDE------------SSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHH------------HHHHHHHHHhcCCCCEEEeecc
Confidence 99999999999999999999999999 9999999998441 111 01112467999999999
Q ss_pred ccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC
Q 005046 154 GDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG 233 (716)
Q Consensus 154 GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG 233 (716)
|. |.-+.+....+-+..+.- ..+..|++||||.-+|.|+||||||+. ++|+.|+| .+
T Consensus 162 g~------------Gss~gh~m~lv~~~~~L~-------~l~~p~~lQEfVnh~g~d~RVfVvGd~-v~~~~R~S---~~ 218 (328)
T PLN02941 162 AD------------GSAKSHKMSLAYDQEGLS-------KLEPPLVLQEFVNHGGVLFKVYVVGDY-VKCVRRFS---LP 218 (328)
T ss_pred cC------------CCccccceEEecCHHHHH-------hcCCcEEEEEecCCCCEEEEEEEECCE-EEEEEecC---Cc
Confidence 92 211222333332221111 134469999999999999999999999 59999998 67
Q ss_pred cee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeC---CCcEEE
Q 005046 234 VVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVC 284 (716)
Q Consensus 234 ~vr---rN~~gk----------------e~-------r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~---g~syV~ 284 (716)
.|+ .|+++| +. ..+...+++-+++|.++++++|+.++||||++.. ++.||+
T Consensus 219 n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~Vi 298 (328)
T PLN02941 219 DVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVI 298 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEE
Confidence 777 888877 32 4455667789999999999999999999999996 357799
Q ss_pred eccCccccccchhhHHHHHHHHHHHH
Q 005046 285 DVNGWSFVKNSYKYYDDAACVLRKMF 310 (716)
Q Consensus 285 DVNgwSFVK~n~kYYddcA~IL~~~~ 310 (716)
|||+++-+|+-..|+..-.+-|.+++
T Consensus 299 dVN~fP~~k~~p~~~~~l~~~~~~~~ 324 (328)
T PLN02941 299 DINYFPGYAKMPGYETVLTDFLLSLV 324 (328)
T ss_pred EecCCCccccCCchHHHHHHHHHHHH
Confidence 99999999999999865555444443
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=234.10 Aligned_cols=250 Identities=20% Similarity=0.264 Sum_probs=183.2
Q ss_pred EEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCc-ceee--cCC-------CcccCCcCeeeccccCC--CcHHHHHH
Q 005046 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVIL--EDP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (716)
Q Consensus 8 ~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d-~vIL--~e~-------ve~wP~~D~lIsf~s~g--fpl~kai~ 75 (716)
++||-+.+....| -+.+++-+.+.| ++++++.- +..+ +.. ......+|+++++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4666666655444 345555555555 66655543 2222 111 12345789999976543 22244567
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEeeccc
Q 005046 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (716)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~G 154 (716)
.++..||+++|+..+..+++||..++++|+++|||+|+|.++... + +..+.++ .+ +.|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~---~------~~~~~~~~~~----~~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP---D------DTSDLIDMVG----GAPLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH---H------HHHHHHHHhC----CCCEEEEECCC
Confidence 889999999999999999999999999999999999999987522 1 1112222 22 38999999999
Q ss_pred cCcceeEEeccCCCChHHHHHhhhCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCC
Q 005046 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (716)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~D 232 (716)
. .|.|+. +++...+....++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 6 555554 3322211111111 11 23456999999987 79999999999999999999886 7
Q ss_pred CceeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccc
Q 005046 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSF 291 (716)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSF 291 (716)
|.|+.|.+.|+..++..|+++++++|.++++++|..++|||++.+.+|+||+|||..+=
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~pg 266 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPG 266 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECCCC
Confidence 89999999888999999999999999999999999999999999987899999997543
|
|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=215.71 Aligned_cols=249 Identities=20% Similarity=0.234 Sum_probs=178.4
Q ss_pred EEEeecCCccCChhHHHHHHHhhcCCceEEEEeCc---ceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCccc
Q 005046 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (716)
Q Consensus 9 iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~i 85 (716)
|||++=.... =++.+.+.+.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654333 4445555555555 55666653 233333223489999999887444443467778888898899
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
|+..+..+++||+..+++|+++|||+|+|..+... + +....+. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~---~------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP---E------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH---H------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988632 1 1112222 23489999999986
Q ss_pred CCCChHHHHHhhhCCCccccccccccc-ccCcceEEeeccCCC-CceeEEEEECCceeEEEeecCCCCCCceeecCCCCc
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTG-GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyQEFi~~~-G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke 243 (716)
.|.|+. +++...+....+. .+... ...+.||+||||+.. |.|+||+++|+++++++.|.. .+.|+.|.+.|+
T Consensus 135 -~g~gv~-~i~~~~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~ 208 (277)
T TIGR00768 135 -WGRLVS-LARDKQAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGG 208 (277)
T ss_pred -CCCceE-EEcCHHHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCC
Confidence 333332 1111100000000 00000 112579999999974 699999999999999998873 688999999888
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCC-CcEEEeccCcc
Q 005046 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEG-RSYVCDVNGWS 290 (716)
Q Consensus 244 ~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g-~syV~DVNgwS 290 (716)
...++.|+++.+++|.++++++|..+||||++.+.+ ++||+|||..+
T Consensus 209 ~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~p 256 (277)
T TIGR00768 209 KAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNP 256 (277)
T ss_pred eeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCCc
Confidence 888999999999999999999999999999999865 79999999865
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=213.24 Aligned_cols=238 Identities=18% Similarity=0.195 Sum_probs=171.4
Q ss_pred hHHHHHHHhhcCCceEEE-EeCcc--eeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHH
Q 005046 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (716)
Q Consensus 22 Pm~~IL~rL~~~g~feii-iF~d~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~ 98 (716)
..+.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+.........++..+..++|+..+...++||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3566666666655 3332 23333 344666679999999998733332223445566788988999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhh
Q 005046 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (716)
Q Consensus 99 ~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (716)
..+++|+++|||+|+|..+... . +..+.. ..++.|+|+||..|. .|-|+. ++...
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~---~------~~~~~~----~~~~~P~vvKP~~g~-----------~g~gv~-~v~~~ 144 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR---E------AALKLA----EALGYPVVLKPVIGS-----------WGRLVA-LIRDK 144 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH---H------HHHHHH----HHcCCCEEEEECcCC-----------CcCCEE-EECCH
Confidence 9999999999999999988622 1 111111 124589999999985 333432 11111
Q ss_pred CCCccccccccccc--ccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH
Q 005046 179 GNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 256 (716)
Q Consensus 179 gn~sS~~~p~~~~~--r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~ 256 (716)
.+....+.. .... ..+..+|+||||+..|.|++++++|+.++|++.|.+ +.|+.|.+.|+...|+.++++.++
T Consensus 145 ~~l~~~~~~-~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~ 219 (280)
T TIGR02144 145 DELESLLEH-KEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEE 219 (280)
T ss_pred HHHHHHHHH-HHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHH
Confidence 000000000 0001 124569999999987999999999999999999976 678999988888889999999999
Q ss_pred HHHHHHHHhcCceeeEeEEeeC-CCcEEEeccCcc
Q 005046 257 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 257 iA~ka~kafgq~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
+|.++++++|..++|||++.+. |++||+|||.++
T Consensus 220 ~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~p 254 (280)
T TIGR02144 220 LAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHVP 254 (280)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCCc
Confidence 9999999999999999999985 479999999864
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-24 Score=222.90 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=153.3
Q ss_pred cccCCcCeeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccc
Q 005046 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~ 126 (716)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+...+.||+.+++++. ++|+|.++... +
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~---~-- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK---A-- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH---H--
Confidence 4578899999886555542 45788888899999999999999999999999766 89999887632 1
Q ss_pred ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc--cCcceEEeecc
Q 005046 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (716)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFi 204 (716)
+..+.++-. .|+|+||++|+ +|.|+.++-..-.+..+.++ ... ....||+|+||
T Consensus 146 ----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~I 201 (316)
T PRK05246 146 ----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFRVKADDPNLGSILE----TLTEHGREPVMAQRYL 201 (316)
T ss_pred ----HHHHHHHHC-----CCEEEEECCCC-----------CccceEEEeCCCccHHHHHH----HHHHccCCeEEEEecc
Confidence 112222212 48999999997 55565422111011111111 122 24589999999
Q ss_pred CC-CCceeEEEEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCC
Q 005046 205 PT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (716)
Q Consensus 205 ~~-~G~DIKvytVG~~~vh-Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---kafgq~VcGfDLLRs~g 279 (716)
+. .+.|+||+++|++++| |+.|.++ .|+||+|.|.|+...++.||++++++|.+++ ++.|+.+||||++
T Consensus 202 ~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---- 275 (316)
T PRK05246 202 PEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI---- 275 (316)
T ss_pred ccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe----
Confidence 98 5789999999999999 9999987 7999999999999999999999999999999 5779999999999
Q ss_pred CcEEEeccCc
Q 005046 280 RSYVCDVNGW 289 (716)
Q Consensus 280 ~syV~DVNgw 289 (716)
+.||+|||..
T Consensus 276 ~~~l~EvN~~ 285 (316)
T PRK05246 276 GDYLTEINVT 285 (316)
T ss_pred CCEEEEEeCC
Confidence 4589999954
|
|
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=220.84 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=153.0
Q ss_pred cccCCcCeeeccccCCCcH-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccc
Q 005046 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~ 126 (716)
-.|+.+|+++.+-...|.. ...+++++..|..++|+..+.....||..+++++. |+|+|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~---~-- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK---A-- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH---H--
Confidence 4588999999886555542 46889999999999999999999999999988763 89999987632 1
Q ss_pred ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc--cCcceEEeecc
Q 005046 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (716)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFi 204 (716)
+..+.+.-. .|+|+||+.|+ .|.|+.++-..-.+.++..+ ... ....|++||||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~v~~~~~~~~~~~~----~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFRLDPGDPNFNSILE----TMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEEEcCCCccHHHHHH----HHHhccCCcEEEEecc
Confidence 112222211 38999999997 55565432110100111111 111 23579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCC
Q 005046 205 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (716)
Q Consensus 205 ~~-~G~DIKvytVG~~~v-hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---kafgq~VcGfDLLRs~g 279 (716)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...++.||++|+++|.+++ +++|+.+||||+|
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 778999999999975 69999886 8999999999999999999999999999998 7789999999999
Q ss_pred CcEEEeccCc
Q 005046 280 RSYVCDVNGW 289 (716)
Q Consensus 280 ~syV~DVNgw 289 (716)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999954
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=216.68 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=150.0
Q ss_pred cccCCcCeeeccccCCCcH--HHHHH--------HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCC
Q 005046 52 EKWPICDCLIAFYSSGYPL--EKAES--------YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (716)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl--~kai~--------y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~ 121 (716)
-.|..+|+++.+-.-.+.. ...+. +++..+.+++|+..+...+.||+..+++++ +++|+|++.+..
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578889999876555543 22333 236778999999999999999998876444 789999987622
Q ss_pred CccccccccCccceee-ecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhC--CCcccccccccccccCcce
Q 005046 122 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 198 (716)
Q Consensus 122 ~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig--n~sS~~~p~~~~~r~~gsy 198 (716)
+ +..+.++ .++ .|+|+||++|. .|.|+.+ +..-. |..+.++ .....+.+
T Consensus 151 --~------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~~-v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 --E------YIREFLEESPG----DKMILKPLQGS-----------GGQGVFL-IEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred --H------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeEE-EecCChhhHHHHHH----HHhhCCCE
Confidence 1 1122232 232 46999999997 5555542 21111 1111121 22235689
Q ss_pred EEeeccCC-CCceeEEEEECCcee------EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh---cCc
Q 005046 199 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 268 (716)
Q Consensus 199 IyQEFi~~-~G~DIKvytVG~~~v------hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf---gq~ 268 (716)
|+||||++ .+.|+||++||++++ ||+.|.++ .|+||+|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999997 678999999999999 99999885 7999999999989999999999999999999988 999
Q ss_pred eeeEeEEeeCCCcEEEeccCc
Q 005046 269 VCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 269 VcGfDLLRs~g~syV~DVNgw 289 (716)
+||||++ +.+|+|||..
T Consensus 281 ~~gVDli----~~~l~EIN~~ 297 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNVF 297 (338)
T ss_pred EEeEEEE----CCEEEEEeCC
Confidence 9999999 5689999943
|
|
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-19 Score=189.96 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=134.8
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEeeccccCcceeEE
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
..|+=+...++.||..+.++|+++|||+|+|..+..... ..++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 458888889999999999999999999999988774311 1122222 233 257999999999
Q ss_pred eccCCCChHHHHHhhhCCCc------cccccc-cc---------ccccC--cceEEeeccCCC-----------CceeEE
Q 005046 163 YPSSAGGGMKELFRKVGNRS------SEFHPD-VR---------RVRRE--GSYIYEEFMPTG-----------GTDVKV 213 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~s------S~~~p~-~~---------~~r~~--gsyIyQEFi~~~-----------G~DIKv 213 (716)
+|-|+. +++...+.. +.+.++ +. .+... ..+.|+||+... +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 888876 443322111 010000 00 00112 224445664332 389999
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 005046 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (716)
Q Consensus 214 ytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt--------------------------------~eEk~iA~ka 261 (716)
+|||++.++||.|.+. -.|.|+.|.|.|+...++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999662 357899999999999998886 6788999999
Q ss_pred HHHhcCceeeEeEEee-CCCcEEEeccCcccc
Q 005046 262 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 292 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs-~g~syV~DVNgwSFV 292 (716)
++++|+.++|+|++.+ .++++|+|||+-+-+
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 689999999987644
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-19 Score=199.78 Aligned_cols=180 Identities=22% Similarity=0.336 Sum_probs=135.5
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEe
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYy 163 (716)
.+|+..+..++.||..+.++|+++|||+|++.+++.. + +..++++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~---~------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG---E------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH---H------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6788899999999999999999999999999998722 1 1111222 233 7999999997
Q ss_pred ccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 005046 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (716)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~------ 234 (716)
+|.|+. + .+.+... +..-+. ..+....+|.|||++ |.|+||+|||+++++|+.|.+|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 666664 2 1211111 111000 122445799999994 999999999999999999998843 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 005046 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (716)
Q Consensus 235 ------------------------------------------------vrrN~~gke~r~pv--~Lt~eEk~iA~ka~ka 264 (716)
.++|+|-|+....| .+.|+.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788888888788 7999999999999999
Q ss_pred hcCceeeEeEEeeC-CCc--EEEeccCcccccc
Q 005046 265 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFVKN 294 (716)
Q Consensus 265 fgq~VcGfDLLRs~-g~s--yV~DVNgwSFVK~ 294 (716)
+|+.||||||+... .+| +|||||.-+-..+
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~ 526 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGLAN 526 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccccc
Confidence 99999999999874 455 7999997765543
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=167.71 Aligned_cols=247 Identities=17% Similarity=0.190 Sum_probs=165.5
Q ss_pred eeEEEEee------cCCccCChhHHHHHHHhhcCCceEEEEeCc-ceeecCCCcccCCcCeeeccccCCCcHH-HHHHHH
Q 005046 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (716)
Q Consensus 6 ~i~iGVCa------M~~Ka~SkPm~~IL~rL~~~g~feiiiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~ 77 (716)
+++|+||+ -+....|. +.|++-|.+.| ++++.... +-+++ .-.+..+|+++..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 44444443 67777777654 66666532 22222 122457899998865434332 244456
Q ss_pred HhcCCcccCC-chhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccC
Q 005046 78 TLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (716)
Q Consensus 78 ~lr~p~~iNd-l~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ged 156 (716)
+..+...+|. ..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~-~~~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE------------EDLLAA-IDKLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc------------chHHHH-HhhcCCCEEEeeCCCC-
Confidence 6777766655 789999999999999999999999999998833 111111 1134589999999985
Q ss_pred cceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--
Q 005046 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (716)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG-- 233 (716)
.|.|+. ++.|.....+ -+. .......+|+|||++ |.++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 333332 1211111000 000 012256799999997 8999999999999888887763 34
Q ss_pred ceeecCCCCceee--eeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEEeccCcc
Q 005046 234 VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 234 ~vrrN~~gke~r~--pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
.++.+.+.|+..+ |..+++++ +++|.++++++|. .+|+||++.++ |++||+|||..+
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p 270 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCC
Confidence 4677777665443 33577654 6789999999998 48999999997 669999999754
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-18 Score=194.70 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=136.9
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEe
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYy 163 (716)
.-++..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 5778888999999999999999999999999987632 222221 1235699999999996
Q ss_pred ccCCCChHHHH-HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 005046 164 PSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (716)
Q Consensus 164 p~~~GgG~~rL-frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~------ 234 (716)
+|.|+. + .+....-.+.++. ..+....+|+|||++ |.|+||+|||+++++|..|.+|-+ ||.
T Consensus 261 ---~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 455553 2 1111100111110 112346799999996 999999999999999999998854 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 005046 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (716)
Q Consensus 235 -------------------------------------------------vr--rN~~gke~r~pv~--Lt~eEk~iA~ka 261 (716)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 4888888888886 999999999999
Q ss_pred HHHhcCceeeEeEEeeC-------CCcEEEeccCccccccc
Q 005046 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKNS 295 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-------g~syV~DVNgwSFVK~n 295 (716)
|+++|+.||||||+... .+..|||||.=+-++..
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~ 452 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMH 452 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhc
Confidence 99999999999999853 45689999988777653
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=195.94 Aligned_cols=177 Identities=21% Similarity=0.292 Sum_probs=130.6
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEec
Q 005046 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (716)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp 164 (716)
.++..+..+++||..+.++|+++|||+|++.++... ++..+. -..++.|+|+||.+|.
T Consensus 202 ~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~--------- 259 (864)
T TIGR02068 202 RTSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN--------- 259 (864)
T ss_pred CCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC---------
Confidence 356778899999999999999999999999988632 122221 1234599999999996
Q ss_pred cCCCChHHHH-HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC----------
Q 005046 165 SSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG---------- 233 (716)
Q Consensus 165 ~~~GgG~~rL-frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG---------- 233 (716)
+|.|+. + .+........|. ........+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 --~G~GV~-l~v~s~~el~~a~~---~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 260 --HGRGVT-INILTRDEIESAYE---AAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred --CccCEE-EEeCCHHHHHHHHH---HHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHH
Confidence 455543 2 111100000011 0112345799999995 89999999999999999999997544
Q ss_pred --------------------------------------------c---e--eecCCCCceeeee--eCCHHHHHHHHHHH
Q 005046 234 --------------------------------------------V---V--MRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (716)
Q Consensus 234 --------------------------------------------~---v--rrN~~gke~r~pv--~Lt~eEk~iA~ka~ 262 (716)
+ + ++|.+.|+...-+ .++|+.+++|.++|
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 1 3 5678888888777 99999999999999
Q ss_pred HHhcCceeeEeEEee-------CCCcEEEeccCccc
Q 005046 263 IAFRQAVCGFDLLRC-------EGRSYVCDVNGWSF 291 (716)
Q Consensus 263 kafgq~VcGfDLLRs-------~g~syV~DVNgwSF 291 (716)
+++|+.||||||+-. ..+..|||||+-+=
T Consensus 412 ~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~ 447 (864)
T TIGR02068 412 KIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPG 447 (864)
T ss_pred HHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCcc
Confidence 999999999999763 23347999997643
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-16 Score=183.28 Aligned_cols=184 Identities=19% Similarity=0.201 Sum_probs=127.6
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
...|...+-.+++||..+.++|+++|||+|++..+... + +..+.+. ...+.|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~---e------~a~~~~~---~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL---E------EALADYS---LFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH---H------HHHHHHH---HhcCCCEEEEECCCC-------
Confidence 45677777788899999999999999999999888622 0 1111221 112489999999997
Q ss_pred eccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--e---
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--V--- 235 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~--v--- 235 (716)
.|-|+. +++.+.+.......=....+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-| ||. +
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 677765 55544333322221000223456799999995 999999999999999999999866 443 1
Q ss_pred --eec--------------------------------------------------CCCCceeee--eeCCHHHHHHHHHH
Q 005046 236 --MRN--------------------------------------------------PDGKEVRYP--VLLTPNEKQMAREV 261 (716)
Q Consensus 236 --rrN--------------------------------------------------~~gke~r~p--v~Lt~eEk~iA~ka 261 (716)
..| .+-|+...- =.+.|+-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 011 221221111 14667779999999
Q ss_pred HHHhcCceeeEeEEeeC-------C--CcEEEeccCcccc
Q 005046 262 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSFV 292 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-------g--~syV~DVNgwSFV 292 (716)
|+++|+.||||||+-.. . +..|||||+=+-.
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l 728 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAM 728 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCch
Confidence 99999999999999653 1 5579999986543
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=148.44 Aligned_cols=247 Identities=15% Similarity=0.184 Sum_probs=156.7
Q ss_pred cCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhh
Q 005046 18 VFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLH 95 (716)
Q Consensus 18 a~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~ 95 (716)
+.-+--++|++-|.+.| ++++.++..--+-......+.+|+++....-.+-. ..+.+.++..+.+.+ ++..+..+++
T Consensus 16 ~sl~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~ 94 (299)
T PRK14571 16 ISLRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICF 94 (299)
T ss_pred chHHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHc
Confidence 33345567777787755 66665543211111122234678888775433322 345667778886666 5689999999
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||..+.++|+ +|||+|++..+... . ....++.|+|+||.+|. .|-|+.
T Consensus 95 DK~~~k~~l~-~~ip~p~~~~~~~~------------~-----~~~~l~~P~vvKP~~g~-----------~s~Gv~--- 142 (299)
T PRK14571 95 DKLLTYRFLK-GTVEIPDFVEIKEF------------M-----KTSPLGYPCVVKPRREG-----------SSIGVF--- 142 (299)
T ss_pred CHHHHHHHHh-cCCCCCCEEEEech------------h-----hhhhcCCCEEEecCCCC-----------CcCCEE---
Confidence 9999999998 58999999888521 0 01235699999999985 233332
Q ss_pred hhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCCCC--ceeecCCCCcee--ee
Q 005046 176 RKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVR--YP 247 (716)
Q Consensus 176 rkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~---~vhAe~RKSPv~DG--~vrrN~~gke~r--~p 247 (716)
++.|.... ...+. ..+....+|+||||+ |+++.|-++|.. .+.+....-| .++ .+..+.++++.. .|
T Consensus 143 -~v~~~~el-~~~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 143 -ICESDEEF-QHALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred -EECCHHHH-HHHHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeC
Confidence 12111110 00000 112345799999996 899999999853 3555544333 122 133444445544 35
Q ss_pred eeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEeccCccccccchhhHHHH
Q 005046 248 VLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302 (716)
Q Consensus 248 v~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVNgwSFVK~n~kYYddc 302 (716)
..|+++. +++|.++++++|. .+|+||+.-.+|++||+|||.-+-......+...|
T Consensus 218 ~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~Pg~~~~s~~~~~~ 277 (299)
T PRK14571 218 APLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVPGLTELSDLPASA 277 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCCCCCccCHHHHHH
Confidence 6688764 5689999999995 79999999888899999999987776554444333
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=147.78 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=132.5
Q ss_pred CCcCeeeccccCCCcH-HHHHHHHHhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iN-dl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++.....+.. ..+-+.++..+.+.+| +..+..+++||..+.++|+++|||+|++..+.++.. . .
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--~------~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRA--S------A 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccc--c------c
Confidence 3579998854221122 3556677888866666 489999999999999999999999999999872210 0 0
Q ss_pred cce-eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 133 EDF-VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 133 ~d~-I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.+. +.--...++.|+|+||..|. ..+|++-... ..|.+.+.. ....+..+|+|||++ |++
T Consensus 134 ~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~------~el~~~~~~----------~~~~~~~~lvEe~i~--G~e 195 (315)
T TIGR01205 134 DELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSE------EELQAALDE----------AFEYDEEVLVEQFIK--GRE 195 (315)
T ss_pred hhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCH------HHHHHHHHH----------HHhcCCcEEEEcCCC--CEE
Confidence 000 00000134699999999974 2333222211 111111100 112356799999995 999
Q ss_pred eEEEEEC-CceeEEEeecCCCC-CCceeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCC-C
Q 005046 211 VKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEG-R 280 (716)
Q Consensus 211 IKvytVG-~~~vhAe~RKSPv~-DG~vrrN~~gke~r--~pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g-~ 280 (716)
+.|.++| +.....+.+-.... --.+..+.+.++.. .|..|++++ +++|.++++++|. .+|+||++.+.+ +
T Consensus 196 ~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~ 275 (315)
T TIGR01205 196 LEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGE 275 (315)
T ss_pred EEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 9999999 54334443322100 00123343433333 344677754 7899999999998 699999999864 6
Q ss_pred cEEEeccCc
Q 005046 281 SYVCDVNGW 289 (716)
Q Consensus 281 syV~DVNgw 289 (716)
+||+|||.-
T Consensus 276 ~~viEvN~~ 284 (315)
T TIGR01205 276 IYLNEINTI 284 (315)
T ss_pred EEEEEeeCC
Confidence 999999964
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-15 Score=170.38 Aligned_cols=179 Identities=22% Similarity=0.304 Sum_probs=121.2
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee-eecCeeecCcEEEeeccccCcceeEE
Q 005046 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I-~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
...+..+-.++.||..+-++|+++|||+|....+.... +....+ .+. ++|+|+||++|.
T Consensus 463 s~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~----g~PVVVKP~~g~------- 522 (737)
T TIGR01435 463 SKDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFE----NKAIVVKPKSTN------- 522 (737)
T ss_pred CCccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhc----CCCEEEeeCCCC-------
Confidence 34456667899999999999999999999998886321 011111 223 389999999997
Q ss_pred eccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--ee-
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM- 236 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--DG~--vr- 236 (716)
+|-|+. +++...+. .++...+. ..+.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||. ++
T Consensus 523 ----~G~GVs-i~~~~~~~-eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~e 594 (737)
T TIGR01435 523 ----YGLGIT-IFKNGFTL-EDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRE 594 (737)
T ss_pred ----CcCCeE-EecCcCCH-HHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHH
Confidence 666664 33322111 11111111 234566799999996 999999999999999999998866 553 11
Q ss_pred ----ecCC---CCcee-----------------------------------------------eee-eCCHHHHHHHHHH
Q 005046 237 ----RNPD---GKEVR-----------------------------------------------YPV-LLTPNEKQMAREV 261 (716)
Q Consensus 237 ----rN~~---gke~r-----------------------------------------------~pv-~Lt~eEk~iA~ka 261 (716)
.|.+ |++.+ -.+ .+.|+-+++|.+|
T Consensus 595 LI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~a 674 (737)
T TIGR01435 595 LVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRI 674 (737)
T ss_pred HHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHH
Confidence 1211 12111 111 4556779999999
Q ss_pred HHHhcCceeeEeEEeeC-C--------CcEEEeccCcc
Q 005046 262 CIAFRQAVCGFDLLRCE-G--------RSYVCDVNGWS 290 (716)
Q Consensus 262 ~kafgq~VcGfDLLRs~-g--------~syV~DVNgwS 290 (716)
|+|+|+.||||||+-.. . +.-|||||.=+
T Consensus 675 a~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 675 ATAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred HHhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 99999999999999542 1 12389999754
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-15 Score=144.58 Aligned_cols=145 Identities=22% Similarity=0.339 Sum_probs=92.0
Q ss_pred CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc
Q 005046 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (716)
Q Consensus 111 ~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (716)
+|.|++.... . +..++++-.| . +|+||+.|. .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~---~------~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDK---E------EIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-H---H------HHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCH---H------HHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 4788777622 1 2233343333 3 999999997 55566544333333344443
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 005046 191 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (716)
Q Consensus 191 ~~r~~--gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-- 265 (716)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.++ .|+||.|.+-|+...++.||++|++||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 54599999999999999999996 9999999999999999999999999999999887
Q ss_pred -cCceeeEeEEeeCCCcEEEeccCcc
Q 005046 266 -RQAVCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 266 -gq~VcGfDLLRs~g~syV~DVNgwS 290 (716)
|+..+|+|+| |.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7889999999 56999999765
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=140.62 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=151.6
Q ss_pred eeEEEEeec----CCccCChhHHHHHHHhhcCCceEEEEeCc--ceeecCCCcccCCcCeeec-cccCCCcHHHHHHHHH
Q 005046 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLIA-FYSSGYPLEKAESYAT 78 (716)
Q Consensus 6 ~i~iGVCaM----~~Ka~SkPm~~IL~rL~~~g~feiiiF~d--~vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~ 78 (716)
+++|+|-+= ++-+.-+-.++|++-|.+- .++++.++- .-++..=.+. .+|+++. +|+..--...+...++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 456666542 2233335677888888775 477777642 1112111111 3565444 4433222245666777
Q ss_pred hcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-C
Q 005046 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-D 156 (716)
Q Consensus 79 lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-d 156 (716)
+.+ ||+-++..+..+++||..+.++|+++|||||++.++... ... -..++.|+|+||.+|. .
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~------------~~~----~~~~~~P~vVKP~~ggss 143 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK------------LVA----EDEISFPVAVKPSSGGSS 143 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh------------hhh----HhhcCCCEEEEeCCCCCC
Confidence 877 556678899999999999999999999999999877621 001 1235699999999974 2
Q ss_pred cceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCcee
Q 005046 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vr 236 (716)
.+|++.... ..|.+.+. .....+.+|+||||+ |+++.|.++|+....+....++ .+.+.
T Consensus 144 ~Gv~~v~~~------~eL~~a~~-----------~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~ 202 (296)
T PRK14569 144 IATFKVKSI------QELKHAYE-----------EASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYD 202 (296)
T ss_pred cCeEEcCCH------HHHHHHHH-----------HHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCC
Confidence 222222211 11222111 111224689999995 8999999999876555544432 22221
Q ss_pred e-cCCCCceee--eeeCC----HHHHHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEEeccCcc
Q 005046 237 R-NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 237 r-N~~gke~r~--pv~Lt----~eEk~iA~ka~kafgq-~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
. +.+.++..+ |..++ .+-+++|.++++++|. .+|.||++-+. |.+||+|||.-+
T Consensus 203 ~~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~P 265 (296)
T PRK14569 203 YESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSP 265 (296)
T ss_pred hhhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCC
Confidence 1 222333333 44454 3567789999999995 69999998864 669999999543
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=136.67 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=128.3
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++|+.+....++ .+..+.++..+ +++.|+.++..+++||....++|+++|||+|++..+... +
T Consensus 69 ~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~ 136 (326)
T PRK12767 69 KIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------E 136 (326)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------H
Confidence 357888865444333 33334444555 467899999999999999999999999999999887622 1
Q ss_pred ceee-ecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~-v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+... +.-..++.|+|+||.+|. .|.|+. +++ |. .++.. .+.....+|+||||.-..-.+-
T Consensus 137 ~~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~ 197 (326)
T PRK12767 137 DFKAALAKGELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVD 197 (326)
T ss_pred HHHhhhhcccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEE
Confidence 2111 011235699999999885 333432 111 11 11110 1222348999999944455666
Q ss_pred EEEE-CCceeEEEeecCCCCCCceeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEeccC
Q 005046 213 VYTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 213 vytV-G~~~vhAe~RKSPv~DG~vrrN~~gke-~r~pv~Lt~eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVNg 288 (716)
+|+. ++++++...++.- ...+|. ....+...++-+++|.++++++|. .+++||++...|++||+|+|.
T Consensus 198 ~~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 198 VLCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 6776 6777776666531 112222 122234568889999999999999 599999999999999999995
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=137.25 Aligned_cols=206 Identities=18% Similarity=0.204 Sum_probs=129.0
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++-..-.+..+ .+..++++.+ ||+=++..+..+++||..+.++|+++|||+|++..+..... ..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~---------~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDW---------EE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEecccc---------ch
Confidence 6899888754333332 4556777777 45556789999999999999999999999999998874310 00
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
..+..-...++.|+|+||.+|. .-+|++..... .|.+.+.. ..+.+..+|+||||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~------el~~a~~~----------~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEE------ELAAALDL----------AFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHH------HHHHHHHH----------HHhcCCcEEEEcCcC--CEEEE
Confidence 0011011235699999999974 22222222111 11111110 123456799999997 89999
Q ss_pred EEEECCc-eeEEEeecCCCCCCcee--ecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeC-CCc
Q 005046 213 VYTVGPE-YAHAEARKSPVVDGVVM--RNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCE-GRS 281 (716)
Q Consensus 213 vytVG~~-~vhAe~RKSPv~DG~vr--rN~-~g-ke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLRs~-g~s 281 (716)
|-++|.+ .+......-+ -++-+. ..- .| .+...|..|+++ -+++|.++++++|. .+|.+|++-+. |.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 1111111111 011110 111 12 233456777765 46899999999997 79999999875 458
Q ss_pred EEEeccCc
Q 005046 282 YVCDVNGW 289 (716)
Q Consensus 282 yV~DVNgw 289 (716)
||+|||.-
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999955
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=138.33 Aligned_cols=194 Identities=16% Similarity=0.232 Sum_probs=130.0
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
+|++||..+..+.+.++.+.++..-.+..++.+....++||...++.++++|||+|+|..++.. ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 6889988876655555555554444567899999999999999999999999999999998732 1111
Q ss_pred eecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV 216 (716)
...-...+.|+|+||+.|. .|.|+.+ +.+. ..+. . .....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~-~~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-E-LPISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-c-cccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112489999999986 3434431 1111 1111 0 011234569999999965556777888
Q ss_pred CCceeEEEeecCCCCCCceeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecc
Q 005046 217 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (716)
Q Consensus 217 G~~~vhAe~RKSPv~DG~vrrN~~gk-e~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs-~g~syV~DVN 287 (716)
++++++...... .... .++ .+.+.....++-.++|.++++++|.. +++||++.+ +|..|++|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 888765444321 1111 111 12222234678899999999999977 999999998 5678999999
|
|
| >PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-13 Score=136.20 Aligned_cols=115 Identities=24% Similarity=0.214 Sum_probs=80.4
Q ss_pred ceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCCcceeecchhcHHHHHHHHhhhccCCCCCCCCCcchhhh
Q 005046 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDF 434 (716)
Q Consensus 355 eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 434 (716)
||+.|+.|+|||||||-.+++..+..+.+..+..
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELES---------------------------------------------- 34 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhh----------------------------------------------
Confidence 6999999999999999988775555554444331
Q ss_pred hchhhHHHHHHHHHcCCCCCccceeecccccccceEEEEEccCccccch------HHHHHHHhccchhhhhhcCCCCCCc
Q 005046 435 EHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGT 508 (716)
Q Consensus 435 e~~~kl~~l~~vL~~~~~f~G~nrvQlKp~~~~~~~~li~KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~ 508 (716)
.+...+.+++|++. .+| .......+||+ ||+. +||+.||+ . |+
T Consensus 35 --------~~~~~~~~~~~~~~-~~~-------~~~~~~~~~g~-LT~~G~~q~~~lG~~lr~-~---------Y~---- 83 (347)
T PF00328_consen 35 --------SAMSPETPGPFPGN-YIQ-------NEFNWPCKWGQ-LTPRGMEQHYQLGKRLRE-R---------YP---- 83 (347)
T ss_dssp --------HHHHHTGGSGGGGT-T---------TCCGSSSCTTS-BTHHHHHHHHHHHHHHHH-H---------HH----
T ss_pred --------hhcccCCCCCcccc-ccc-------cccccCCCCCc-ccchhhhHHHHHHHHHHH-H---------HH----
Confidence 22233444556654 222 12223468898 9998 99999999 5 65
Q ss_pred chhhhcccccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 509 gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
+|+.-+.+. .++.||||+..||++||+||+.||+...+
T Consensus 84 ~l~~~~~~~-~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~ 121 (347)
T PF00328_consen 84 GLFPDNYNP-EQVYVRSTNKQRTIQSAQAFLQGLYPPSG 121 (347)
T ss_dssp TSSTSSS-T-TTEEEEEESSHHHHHHHHHHHHHHSHTTS
T ss_pred Hhccccccc-cceeEEEeccchHHHHHHHHHHHHhCCCc
Confidence 666555555 89999999999999999999999997766
|
Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B .... |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=138.80 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=125.6
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
+|++++-+.. .+. .+++.++..+.++.++..+..+++||....+.| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 7888775543 333 345677778877889999999999999999975 8999999999888732 122
Q ss_pred eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
... ...++.|+|+||++|. .-++++..... -..+.++..... ....++.+|+||||+ .+..+-|.
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~~s~gv~~v~~~~---el~~~~~~~~~~---------~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSSSGKGQSVVRGPE---DIEKAWEYAQEG---------ARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HHH-HHHcCCCEEEEECCCcCCCCeEEECCHH---HHHHHHHHHHhh---------ccCCCCCEEEEEecC-CCEEEEEE
Confidence 111 1235699999999985 12222222111 011112211000 001245799999996 35678887
Q ss_pred EE---CCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEec
Q 005046 215 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 286 (716)
Q Consensus 215 tV---G~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs~g~syV~DV 286 (716)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22222222222334677788764 5788999999997 7889999999999999999
Q ss_pred c
Q 005046 287 N 287 (716)
Q Consensus 287 N 287 (716)
|
T Consensus 269 n 269 (380)
T TIGR01142 269 S 269 (380)
T ss_pred e
Confidence 9
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=134.00 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=124.4
Q ss_pred HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEe
Q 005046 72 KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (716)
Q Consensus 72 kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (716)
.+..++++.|. |+-++..+..+++||..+.++|+++|||+|++..+.+... ....++.+.. -..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~-~~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLK-LESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHH-HHhcCCCEEEe
Confidence 46678888875 4456789999999999999999999999999998875310 0001111111 12356999999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE
Q 005046 151 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (716)
Q Consensus 151 pv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~----~~---vh 222 (716)
|++| ...+|++..... .|-+.+.. ....+..+|+||||+ |+++.|-++|. +. +.
T Consensus 178 P~~ggsS~GV~~v~~~~------el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNAE------QLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCHH------HHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 9997 344444333221 12222210 112345789999995 89999999973 21 11
Q ss_pred --EEeecCCCCCCc---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccCcc
Q 005046 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 223 --Ae~RKSPv~DG~---vrrN~~gke~--r~pv~Lt~e----Ek~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNgwS 290 (716)
.|-+ | .|. ++..-+.++. ..|..|+++ -+++|.++++++|.. ++++|++-+.|++||+|||.-+
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 1 232 2233332332 346667765 588999999999965 9999999988889999999664
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=132.65 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=132.4
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcCCcccCCc-hhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~iNdl-~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++...-.+-.+ .+..++++.+.+.++.- .+..+++||..+.++|+++|||||++..+.+... ..+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787776654333343 77889999998777776 6999999999999999999999999887764310 00111
Q ss_pred ceeeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+...---..++.|+|+||.++ +..+|.+-.... .|-+.+.. ..+.+..+|+||||+ |+++.
T Consensus 161 ~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~~----------a~~~~~~vlVEefI~--GrEi~ 222 (364)
T PRK14570 161 GIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIEE----------AFKYDLTVVIEKFIE--AREIE 222 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHHH----------HHhCCCCEEEECCcC--CEEEE
Confidence 111101123569999999995 434443322211 12111110 122355689999997 99999
Q ss_pred EEEECCceeEE---EeecCCCCCCcee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEe
Q 005046 213 VYTVGPEYAHA---EARKSPVVDGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLR 276 (716)
Q Consensus 213 vytVG~~~vhA---e~RKSPv~DG~vr-----rN~~-gke~--r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLR 276 (716)
|-++|+....+ ..... .++.|- ...+ |+.. .-|..|++ +-+++|.++++++|. .+|.||++-
T Consensus 223 v~Vlg~~~~~v~~~~Ei~~--~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 223 CSVIGNEQIKIFTPGEIVV--QDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred EEEECCCCceEeeeEEEEe--CCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999753221 11110 022221 1112 2222 22556775 678899999999999 699999988
Q ss_pred eC--CCcEEEeccCcc
Q 005046 277 CE--GRSYVCDVNGWS 290 (716)
Q Consensus 277 s~--g~syV~DVNgwS 290 (716)
+. |.+||+|||.-+
T Consensus 301 ~~~~g~~yvlEiNt~P 316 (364)
T PRK14570 301 EKDTGLIYLNEINTIP 316 (364)
T ss_pred ECCCCcEEEEEeeCCC
Confidence 63 669999999553
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=129.43 Aligned_cols=200 Identities=16% Similarity=0.239 Sum_probs=133.0
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++-..-++-.+ .+..++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877754444553 6777888877 5566889999999999999999999999999999887431
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+ + .-..++.|+|+||.+|. ..+|.+..... .|...+.. ..+.+..+|+||||+ |+++-
T Consensus 158 ~-~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~------eL~~a~~~----------a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-P--DAATLTYPVFVKPARSGSSFGVSKVNSAD------ELDYAIES----------ARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-h--hhhhcCCCEEEEeCCCCCCCCEEEeCCHH------HHHHHHHH----------HHhcCCcEEEECCcC--CEEEE
Confidence 0 1 11245699999999974 33333332211 12221110 122356789999996 88999
Q ss_pred EEEECCc---eeEEEeecCCCCCCceeec----CC-C---CceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEe
Q 005046 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD-G---KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 276 (716)
Q Consensus 213 vytVG~~---~vhAe~RKSPv~DG~vrrN----~~-g---ke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLR 276 (716)
|-++|.. .+....+..+ ..|.++.. .. | .+...|..|+++ -+++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888753 2222233322 13333311 11 1 123467778765 46899999999999 799999998
Q ss_pred eC-CCcEEEeccCc
Q 005046 277 CE-GRSYVCDVNGW 289 (716)
Q Consensus 277 s~-g~syV~DVNgw 289 (716)
+. |..||+|||--
T Consensus 296 ~~~g~~~llEINt~ 309 (343)
T PRK14568 296 QEDGTVVLNEVNTL 309 (343)
T ss_pred eCCCCEEEEEeeCC
Confidence 74 56889999943
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=133.98 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=124.3
Q ss_pred cH-HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCc
Q 005046 69 PL-EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (716)
Q Consensus 69 pl-~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kP 146 (716)
|| .....+++..+..+ -.+..+..+.+||..+.++|+++|||+|++..+... + +..+++. .++.|
T Consensus 38 ~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~---~------ea~~~~~----~~g~P 104 (379)
T PRK13790 38 PLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK---K------DALTYIE----NCELP 104 (379)
T ss_pred HHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH---H------HHHHHHH----hcCCC
Confidence 44 45667788888544 466788899999999999999999999998777622 0 1112222 34599
Q ss_pred EEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE--E
Q 005046 147 FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH--A 223 (716)
Q Consensus 147 fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vh--A 223 (716)
+|+||..|. ..++.+.....+ ....++.+- ....++.+|+||||.-..-.|-+++-|..++. +
T Consensus 105 vVvKp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~ 170 (379)
T PRK13790 105 VVVKKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDC 170 (379)
T ss_pred EEEEeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEeccc
Confidence 999999874 233333332211 111111110 01224579999999766778888887765432 2
Q ss_pred EeecCC-CCCCceeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---cCceee---EeEEeeCCCcEEEeccC
Q 005046 224 EARKSP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 224 e~RKSP-v~DG~vrrN~~gke~r~pv-~Lt~eE-----k~iA~ka~kaf---gq~VcG---fDLLRs~g~syV~DVNg 288 (716)
..++.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |..++| +|++-+.+++||+|||.
T Consensus 171 ~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 171 IAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 232221 2467666676443333344 467654 68899999998 545555 59988888999999996
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-11 Score=126.94 Aligned_cols=198 Identities=18% Similarity=0.230 Sum_probs=123.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHH-hCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~-~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|++|+.... .+. .++..++..+..+..+.++..+++||....+.|. ++|||+|++..++.. ++
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~------------~~ 140 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSL------------EE 140 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCH------------HH
Confidence 48889887655 333 2345555667666788999999999999999985 789999999888732 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIK 212 (716)
..+.. ..++.|+|+||..|. ..++++.....+ ..+.++.... ..| ..+.+|+||||+ .|..+-
T Consensus 141 l~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~e---l~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 141 LRAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPED---IEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHHHH-HhcCCCEEEEeCCCcCCCCeEEECCHHH---HHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 22211 135699999999885 223333322211 1222222110 001 236799999997 366777
Q ss_pred EEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcC-ceeeEeEEeeCCCcEEE
Q 005046 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (716)
Q Consensus 213 vytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq-~VcGfDLLRs~g~syV~ 284 (716)
|.++.. ..... .| -+.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|+.-+++++||+
T Consensus 206 v~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFC----AP--IGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEe----cC--cccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 776632 22222 12 122222211122335777887654 489999999984 46779999988999999
Q ss_pred eccC
Q 005046 285 DVNG 288 (716)
Q Consensus 285 DVNg 288 (716)
|+|.
T Consensus 280 Einp 283 (395)
T PRK09288 280 EVSP 283 (395)
T ss_pred EecC
Confidence 9994
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=122.83 Aligned_cols=192 Identities=19% Similarity=0.279 Sum_probs=120.0
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
||++ ++=...+|. .++++++..+..+.++..+..+++||....+.|+++|||+|++..+... + +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDE---E------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCH---H------HHHHHH
Confidence 5654 433334444 3556777776677899999999999999999999999999999998732 1 111111
Q ss_pred eecCeeecCcEEEeecccc--CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
..++.|+|+||..|. ..++++...... ....++. . .+..+|+||||+- |..+-|.
T Consensus 130 ----~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~lvEe~I~~-~~E~sv~ 186 (352)
T TIGR01161 130 ----QELGFPVVLKARTGGYDGRGQYRIRNEAD---LPQAAKE--------------L-GDRECIVEEFVPF-ERELSVI 186 (352)
T ss_pred ----HHcCCCEEEEeCCCCCCCCCEEEECCHHH---HHHHHHh--------------c-CCCcEEEEecCCC-CeEEEEE
Confidence 124589999999863 233333222110 1111111 1 1347999999973 5677776
Q ss_pred EEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEe
Q 005046 215 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCD 285 (716)
Q Consensus 215 tVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~D 285 (716)
++. +++.. -|+..... ++-.......|..+++ +-+++|.++++++|. .++++|++.+.+| +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~~~-~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVENIH-QDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCcccEE-eCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 652 23221 23222211 1110111224555654 357889999999998 4999999998766 99999
Q ss_pred ccC
Q 005046 286 VNG 288 (716)
Q Consensus 286 VNg 288 (716)
||-
T Consensus 261 inp 263 (352)
T TIGR01161 261 LAP 263 (352)
T ss_pred ecC
Confidence 994
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=123.88 Aligned_cols=262 Identities=21% Similarity=0.351 Sum_probs=156.4
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhc-CC
Q 005046 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLR-KP 82 (716)
Q Consensus 4 ~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr-~p 82 (716)
.+..+||.|--.+|.+|==-+..+ -+.+...++++--. ++.|+++==-.||+|-=..+.--.....+|.+.. ..
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~-~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v 79 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFI-DLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEV 79 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHC-CCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTS
T ss_pred ccceEEEEEECHHHHHHhhHHHHH-HHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 467899988888886553333322 34444456665443 4566665545899998777643336667777763 34
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhC-------CCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG- 154 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~-------gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G- 154 (716)
.+|..++++..+.||...|++|++. +|.+|+.+++..+. .+ ..+.+.-. .+..|+|.||+-+
T Consensus 80 ~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~--~~------~~~~l~~a--gL~fPlI~KPlvA~ 149 (307)
T PF05770_consen 80 VVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA--ES------LPELLKEA--GLKFPLICKPLVAC 149 (307)
T ss_dssp EEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH--CC------HHHHHHCT--TS-SSEEEEESB-S
T ss_pred EEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH--HH------HHHHHHHC--CCcccEEeeehhhc
Confidence 6788899999999999888888764 78999999998541 11 11122223 3779999999984
Q ss_pred ---cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC-CC
Q 005046 155 ---DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PV 230 (716)
Q Consensus 155 ---edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKS-Pv 230 (716)
+.|...|-|... |-.. + +...++||||.-+|.=-||||||+.+ +...|+| |=
T Consensus 150 Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v-~~v~R~SLpn 205 (307)
T PF05770_consen 150 GSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKV-FVVKRPSLPN 205 (307)
T ss_dssp STSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEE-EEEEEE----
T ss_pred CCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEE-EEEECCCCCC
Confidence 578888888643 2221 1 22459999999999999999999774 5566666 21
Q ss_pred C-CCce-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHHHHhcCceeeEeEEeeCCC---cEEEec
Q 005046 231 V-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVCIAFRQAVCGFDLLRCEGR---SYVCDV 286 (716)
Q Consensus 231 ~-DG~v-------r----rN~~gke~-------r~pv~Lt--~eEk~iA~ka~kafgq~VcGfDLLRs~g~---syV~DV 286 (716)
+ .|+. . ++.+-... ...+... +.-+++|..+-+++|++..|||++|.++. .||+||
T Consensus 206 ~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 206 VSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp --SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEe
Confidence 1 1111 1 11110000 0112222 23478999999999999999999998644 789999
Q ss_pred cCccccccchhhHHHHHH
Q 005046 287 NGWSFVKNSYKYYDDAAC 304 (716)
Q Consensus 287 NgwSFVK~n~kYYddcA~ 304 (716)
|=|+=+|+-..|+..-.+
T Consensus 286 NyFPgY~~vp~f~~~l~~ 303 (307)
T PF05770_consen 286 NYFPGYKKVPDFESVLTD 303 (307)
T ss_dssp EES--TTTSCTHHHHHHH
T ss_pred ccCCCccCCCChHHHHHH
Confidence 999888888888765443
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-11 Score=115.58 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=95.7
Q ss_pred HhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChH
Q 005046 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 171 (716)
Q Consensus 93 ~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 171 (716)
++.||....+++.++|||+|++..+.... +..+.+. .++.|+|+||..|. .-++++.-... -.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~gs~gv~~~~~~~---~l 64 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGSGSRGVFIVHSPE---EL 64 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-STTTT-EEESSHH---HH
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccccCCCEEEeCCHH---HH
Confidence 46799999999999999999999988331 1122222 12389999999995 12222211111 01
Q ss_pred HHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC-CCCCCceeecCCCCceeeeee-
Q 005046 172 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PVVDGVVMRNPDGKEVRYPVL- 249 (716)
Q Consensus 172 ~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKS-Pv~DG~vrrN~~gke~r~pv~- 249 (716)
.+.++.+.+.+. ..++.||+||||+...-.+.+++.+++.+.+...+. ....+.+..+ ....+...
T Consensus 65 ~~~~~~~~~~~~---------~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 132 (184)
T PF13535_consen 65 EAALAEIREDSP---------LGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSGG---VPTGYSVPS 132 (184)
T ss_dssp HHHHHHHHHHHS----------HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSSS---EEEEEEES-
T ss_pred HHHHHHHHHhcc---------cCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEecccccccccc---eeeeeeccc
Confidence 112222210000 236789999999965577888888888755443333 1001111111 22333332
Q ss_pred ---CCHHHHHHHHHHHHHhcC--ceeeEeEEeeCCC-cEEEeccC
Q 005046 250 ---LTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 250 ---Lt~eEk~iA~ka~kafgq--~VcGfDLLRs~g~-syV~DVNg 288 (716)
+.++-++.+.++++++|. .++++|++...+| .|++|||.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 133 EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp -CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 227788899999999997 9999999999977 58999995
|
|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=126.11 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=124.2
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+ +...|+ ......++..+ |+.-++..+..+++||....++|+++|||+|++..+... + +..+
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA---E------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---H------HHHH
Confidence 466664 233444 34455666677 444577888999999999999999999999999887622 1 1112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
.+. .++.|+|+||..|. ..++++...... ....++.+-+. +.+. +..+.+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 24589999999874 123333222111 11122221110 0010 124579999999743344444
Q ss_pred EEECCceeE-EEeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc---C---ceeeEeEEeeCC
Q 005046 214 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 279 (716)
Q Consensus 214 ytVG~~~vh-Ae~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kafg---q---~VcGfDLLRs~g 279 (716)
++-|..+.. ...|. -...+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|+.-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 544444322 22221 1224666666766666666775 787543 36666777654 3 567889999999
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
|+||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999995
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=120.79 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=125.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|++|+..-.+.++...+ .+..++...|+..+...++||....+.|.++|||+|++..+... + +..+.
T Consensus 70 ~~d~vi~~~e~~~~~~a~l--~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~---~------e~~~~ 138 (416)
T PRK07206 70 GPEAIIAGAESGVELADRL--AEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADW---E------EAEAW 138 (416)
T ss_pred CCCEEEECCCccHHHHHHH--HHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCH---H------HHHHH
Confidence 3689999765555553333 23455555899999999999999999999999999999888622 1 11222
Q ss_pred eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
+.-.| -++.|+|+||++|. ..+|++...... ....++..-+..+.+. ..+..+|+||||+-.--.|-++
T Consensus 139 ~~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~ 208 (416)
T PRK07206 139 LRENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFV 208 (416)
T ss_pred HHhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEE
Confidence 22111 01249999999974 344444443321 2233333321111111 1246799999997544556667
Q ss_pred EECCceeE-EEee--cCCCCCCceeecCCCCceeee--eeCCHHHHHHHHHHHHHhcC--ceeeEeEEeeCCCcEEEecc
Q 005046 215 TVGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYP--VLLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 215 tVG~~~vh-Ae~R--KSPv~DG~vrrN~~gke~r~p--v~Lt~eEk~iA~ka~kafgq--~VcGfDLLRs~g~syV~DVN 287 (716)
+.+++... +..+ +.+..+|.+..+ ... ..| ....++-.++|.++++++|. .++.+|+..+.+|++|+|||
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 209 SLDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred EECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 76777443 2232 222223322111 001 011 11223455678999999998 57889999999999999999
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=116.47 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=121.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++ +|-....|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 57764 443344554 566677666 557799999999999999999999999999999988732 122
Q ss_pred eeecCeeecCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
... ...++.|+|+||..| . .+++++...... ....+... ..+.+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 111 113469999999984 3 344444332211 11122211 2457999999984 566776
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEecc
Q 005046 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (716)
Q Consensus 214 ytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~g~-syV~DVN 287 (716)
.++... .-+.+--|+.. .+.+|-.-.....|..+++ +-+++|.++++++|.. ++++|++.+.+| +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 655421 00111123211 1111100011223555554 5678899999999965 888999998666 9999999
Q ss_pred Cc
Q 005046 288 GW 289 (716)
Q Consensus 288 gw 289 (716)
-=
T Consensus 265 pR 266 (372)
T PRK06019 265 PR 266 (372)
T ss_pred CC
Confidence 63
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=136.88 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=130.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
..|.+|+.++.-.++ .....++..|. +.-|+.++..+++||....++|+++|||+|++..+... ++
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~------------ee 695 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV------------EE 695 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH------------HH
Confidence 368899988866666 45556667774 44578999999999999999999999999999988622 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-G~DIK 212 (716)
..... ..++.|+|+||..|. ..++++.+.... ....++..- ....++.+|+||||+-. .-+|-
T Consensus 696 ~~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~ee---L~~~~~~a~-----------~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 696 ALEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEE---LERYMREAV-----------KVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------hhCCCCcEEEEecCCCCEEEEEE
Confidence 22211 234599999998874 233333322110 111111110 11235679999999764 67888
Q ss_pred EEEECCce-eEE-EeecCCCCCCceeecCCCCceee---eeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeCCCcE
Q 005046 213 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (716)
Q Consensus 213 vytVG~~~-vhA-e~RKSPv~DG~vrrN~~gke~r~---pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLRs~g~sy 282 (716)
++.-|..+ +.+ +.+..+ ...|.|+... |..|+++ -+++|.++++++|. .++++|++.+.+++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 88766532 222 232221 2345454433 3567754 46688899999998 466799999999999
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999994
|
|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-10 Score=122.84 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=120.5
Q ss_pred CCcCeeeccccCCCcHH-HHHH-HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEE--EecCCCccccccc
Q 005046 55 PICDCLIAFYSSGYPLE-KAES-YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 129 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~-y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~--~~r~~~~~~~~~~ 129 (716)
..||+++|-| ||-.+ ..++ -++..+ ||+..+.++..+++||....++|+++|||+|++.. +. +
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~-~--------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIE-N--------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccC-C---------
Confidence 5789998865 33221 2222 234455 46789999999999999999999999999998753 22 1
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
.++....- ..++.|+|+||++|. .+++++.....+ ....++...+.+- ....++.+|+||||.. +
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~e---l~~a~~~~~~~~~-------~~~~~~~vivEe~i~g-~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEEE---LIKAFNTAKSEAK-------AAFGDDSMYIEKFIEN-P 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHHH---HHHHHHHHHHHHH-------HhcCCCeEEEEecCCC-C
Confidence 12222211 235699999999985 233333222111 1222222210000 0012467999999963 4
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCceee-EeEEeeCC
Q 005046 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVCG-FDLLRCEG 279 (716)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~kafgq~VcG-fDLLRs~g 279 (716)
+.+-|.+++. ++++.-.|... ..++|..--+.. |. .|++ +-+++|.++++++|..-++ +|++.+.+
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~ 281 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKD 281 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCC
Confidence 6788877763 45555333221 122221111111 22 4666 3457899999999976555 99998755
Q ss_pred C-cEEEeccC
Q 005046 280 R-SYVCDVNG 288 (716)
Q Consensus 280 ~-syV~DVNg 288 (716)
| .||+|||.
T Consensus 282 g~~~~iEvNp 291 (447)
T PRK05586 282 GNFYFMEMNT 291 (447)
T ss_pred CCEEEEEEEC
Confidence 5 79999994
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-10 Score=130.86 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=128.7
Q ss_pred CcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCcccccccc
Q 005046 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (716)
Q Consensus 51 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~ 130 (716)
+..++.+|+++++.-.+.++ |-+-.+..+.+ -|+.++..+++||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~v~~--aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYFIEV--ASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhhHHH--HHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45566788888874434333 33333444533 3788999999999999999999999999999887331
Q ss_pred CccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCc
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
+..+.+. .++.|+|+||++|. ..++++...... ....+..+. . ...+.||+||||+-.--
T Consensus 133 e~~~~~~----~~~~PvVVKP~~g~gS~GV~~v~~~~e---l~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 133 VALDALD----GLTYPVVVKPRMGSGSVGVRLCASVAE---AAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred HHHHHHH----hCCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 1112221 34599999999985 122222221100 111111110 0 12678999999986556
Q ss_pred eeEEEEECCc-eeEEEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC--ceeeEeEEeeCCCcE
Q 005046 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRSY 282 (716)
Q Consensus 210 DIKvytVG~~-~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq--~VcGfDLLRs~g~sy 282 (716)
.|-+++.++. .+.+..++.......|.-+ +.-+|..++++ -.+++.++++++|. .++++|+..+.+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777777544 4555566542111122111 12357777764 45788999999998 578999999999999
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 270 liEIn~ 275 (887)
T PRK02186 270 IIEINP 275 (887)
T ss_pred EEEECC
Confidence 999994
|
|
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-10 Score=123.47 Aligned_cols=202 Identities=18% Similarity=0.248 Sum_probs=118.1
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEE-ecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~-~r~~~~~~~~~~~e 131 (716)
.+|+++|-++ |.- ....+.++..|. +.-++.++..+++||....+.|.++|||+|++... -.+
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~----------- 142 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS----------- 142 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------
Confidence 4789998874 311 223345667774 66799999999999999999999999999886532 111
Q ss_pred ccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... -..++.|+|+||++|. ..++++-....+ ....|+... ++. .....++.+|+||||.. ++.
T Consensus 143 ~~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~~v~~~~e---L~~~~~~~~---~~~----~~~~~~~~vlvEe~i~g-~~e 210 (445)
T PRK08462 143 YEEAKKI-AKEIGYPVILKAAAGGGGRGMRVVEDESD---LENLYLAAE---SEA----LSAFGDGTMYMEKFINN-PRH 210 (445)
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH---HHH----HhccCCCcEEEeccCCC-CeE
Confidence 1111111 1235699999999985 122222221110 111111110 000 00113567999999965 556
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC-C
Q 005046 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-G 279 (716)
Q Consensus 211 IKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~-r~pv-~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~-g 279 (716)
+.|.++|. ++++.-.|...+ .+++ .+-. ..|. .|++ +-+++|.++++++|.. ++-||++-+. |
T Consensus 211 ~~v~v~~~~~g~~~~~g~~~~~~----~~~~--~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g 284 (445)
T PRK08462 211 IEVQILGDKHGNVIHVGERDCSL----QRRH--QKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNL 284 (445)
T ss_pred EEEEEEECCCCCEEEEEeccccc----eecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCC
Confidence 77777753 444442222211 0111 1110 0122 4554 5577899999999985 3349999875 5
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
++||+|||.
T Consensus 285 ~~~viEiNp 293 (445)
T PRK08462 285 DFYFMEMNT 293 (445)
T ss_pred CEEEEEEEC
Confidence 799999994
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=121.65 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.||+++|-| ||-- ..+.+.++..+ ||+-++.++..+++||....++|+++|||+|++....-. +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 489999855 3321 22345555666 456788999999999999999999999999887542101 11
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCc
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~ 209 (716)
++.... -..++.|+|+||.+|. -|-|+. +.+....-...|+--.. ....++.+++|+||.. +.
T Consensus 141 ~e~~~~-~~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~ 206 (472)
T PRK07178 141 DEALAE-AERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PK 206 (472)
T ss_pred HHHHHH-HHHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-Ce
Confidence 222221 1235699999999985 233332 22211100000000000 0012446889999954 66
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCc-eeeEeEEee-CCC
Q 005046 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 280 (716)
Q Consensus 210 DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~-VcGfDLLRs-~g~ 280 (716)
.+-|-++| ++++|...|... ..+++..-.|..-...|+++.+ ++|.++++++|.. ++.+|++-+ .|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 66665554 356666555331 1222322223221226777654 5999999999975 455999985 578
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999994
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-10 Score=121.96 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=116.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~ 132 (716)
.||+++|.++--.--..+.+.++..+. |+.++.++..+++||....+.|+++|||+|++. .+. + .
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~-~-----------~ 141 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVD-D-----------E 141 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccC-C-----------H
Confidence 489999877321111234455566664 567999999999999999999999999999864 332 1 1
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||++|. ..++++-....+ ....++.....+ . ....+..+++||||+. +..+
T Consensus 142 ~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~iv~~~~e---l~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 142 EEALAI-AKEIGYPVIIKATAGGGGRGMRVVRTEAE---LEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHHH-HHHcCCCEEEEECCCCCCceEEEECCHHH---HHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 122211 1134599999999985 133333222111 112222211000 0 0012456899999964 4456
Q ss_pred EEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCC----HHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcE
Q 005046 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (716)
Q Consensus 212 KvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt----~eEk~iA~ka~kafgq~-VcGfDLLRs-~g~sy 282 (716)
-+-+++ +++++.-.|.... .+++..-.+..-+..|+ .+-+++|.++++++|.. ++.||++.+ +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 554443 3455543222110 01000000000011345 45567899999999975 344999988 67799
Q ss_pred EEeccC
Q 005046 283 VCDVNG 288 (716)
Q Consensus 283 V~DVNg 288 (716)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999995
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-10 Score=122.42 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=121.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++.|+ |-. ..+.+.++..+.. .-++.++..+++||....++|.++|||+|+........ +.
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~---------~~ 141 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE---------SM 141 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC---------CH
Confidence 4789998763 321 1234445566644 45889999999999999999999999997743321100 01
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||.+|. ..++++-..... ....++... ++ ......++.+++||||.. ++.+
T Consensus 142 ~~~~~~-~~~igyPvvvKP~~ggGg~Gv~iv~~~~e---L~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~i 209 (478)
T PRK08463 142 EEIKIF-ARKIGYPVILKASGGGGGRGIRVVHKEED---LENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRHI 209 (478)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCceEEeCCHHH---HHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeEE
Confidence 122111 1234699999999985 233333222111 111222110 00 001123567999999975 5666
Q ss_pred EEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCHHHH----HHHHHHHHHhcCceee-EeEEeeC-CCc
Q 005046 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GRS 281 (716)
Q Consensus 212 KvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~eEk----~iA~ka~kafgq~VcG-fDLLRs~-g~s 281 (716)
-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| +|++.+. |++
T Consensus 210 ev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~ 284 (478)
T PRK08463 210 EFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRF 284 (478)
T ss_pred EEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCE
Confidence 6656654 466666564321 11221111221 22 4777665 4899999999977666 9999875 779
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||||||.
T Consensus 285 y~iEiN~ 291 (478)
T PRK08463 285 YFMEMNT 291 (478)
T ss_pred EEEEEEC
Confidence 9999994
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=117.16 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=117.9
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+... .++ ..+.+.++..+ |+.-++..+..+++||....++|+++|||+|++..+... ++
T Consensus 65 id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~ 130 (423)
T TIGR00877 65 IDLAVIGPE--APLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EE 130 (423)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 677776433 333 44666777778 556688899999999999999999999999999888632 12
Q ss_pred eeeecCeeecCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
....- ..++.| +|+||..|. ..++++...... ....++..-+.+ +. ..+..+|+||||. |..+-
T Consensus 131 ~~~~~-~~~g~P~~VvKp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 131 ALSYI-QEKGAPAIVVKADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 22211 134589 999999874 123333222110 111222211100 10 1245799999997 45555
Q ss_pred EEEE--CCceeE-EEeecC-CCCCCceeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhc------CceeeEeEEe
Q 005046 213 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (716)
Q Consensus 213 vytV--G~~~vh-Ae~RKS-Pv~DG~vrrN~~gke~r~pv-~Lt~e-----Ek~iA~ka~kafg------q~VcGfDLLR 276 (716)
|.++ |..+.. ..+|.- ...+|..--++.+-+.-.|. .++++ .++++.++.++++ -.++.+|++.
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 5443 544332 222211 11233222222221222232 35543 2456666777774 3678899999
Q ss_pred eCCCcEEEeccC
Q 005046 277 CEGRSYVCDVNG 288 (716)
Q Consensus 277 s~g~syV~DVNg 288 (716)
+.+++||+|||.
T Consensus 277 t~~g~~viEin~ 288 (423)
T TIGR00877 277 TKEGPKVLEFNC 288 (423)
T ss_pred ECCCcEEEEEEc
Confidence 988899999994
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=116.65 Aligned_cols=209 Identities=11% Similarity=0.112 Sum_probs=117.3
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++++.++- .+. ..+...++..+. +.-++.++..+++||....+.|.++|||+|++...... +.++
T Consensus 75 id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~----------~~~e 143 (450)
T PRK06111 75 AEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLE----------DAEE 143 (450)
T ss_pred CCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcC----------CHHH
Confidence 4778876421 111 124455666664 45688999999999999999999999999987322111 0112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
..... ..++.|+|+||.+|. .+++++.....+ ....++....... ....++.+|+||||.- +..+-+
T Consensus 144 ~~~~~-~~~~~P~VvKP~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 144 AIAIA-RQIGYPVMLKASAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHHHH-HHhCCCEEEEeCCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEEEE
Confidence 11111 134699999999984 345544443321 2223333211000 0112567999999973 344555
Q ss_pred EEEC---CceeEEEeecCCCCCCceeecCCCCcee-eeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEecc
Q 005046 214 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVN 287 (716)
Q Consensus 214 ytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r-~pv~Lt~eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~DVN 287 (716)
.+++ ++.++.-.|..++.... ..-....... ..-.+..+-+++|.++++++|. .++.||++.+.++ +||+|||
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN 290 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSVQRRH-QKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMN 290 (450)
T ss_pred EEEEcCCCCEEEEEeecccccccc-cceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEE
Confidence 4443 33444433332211100 0000000000 0011233556889999999998 5777999988776 9999999
Q ss_pred Cc
Q 005046 288 GW 289 (716)
Q Consensus 288 gw 289 (716)
.=
T Consensus 291 ~R 292 (450)
T PRK06111 291 TR 292 (450)
T ss_pred CC
Confidence 53
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=123.09 Aligned_cols=203 Identities=16% Similarity=0.248 Sum_probs=123.0
Q ss_pred CcCeeeccccCCCcHH--HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|+++|.| ||..+ ...+.++..+ +|+-++.++..+++||....++|+++|||+|+.....-. +.
T Consensus 74 ~~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~----------~~ 141 (499)
T PRK08654 74 GADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE----------DI 141 (499)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCC----------CH
Confidence 368899876 33331 3445555666 456688999999999999999999999999877543101 11
Q ss_pred cceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI 211 (716)
++.... -..++.|+|+||.+|. ..++.+-.... -....++... ++-. ..+ .++.+++|+||.. ++.|
T Consensus 142 ~e~~~~-a~~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~~-~r~i 209 (499)
T PRK08654 142 EEAKEI-AEEIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLEK-PRHI 209 (499)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCCC-CcEE
Confidence 222221 1235699999999985 12222222111 0111222111 0000 001 2567999999964 5678
Q ss_pred EEEEECC---ceeEEEeecCCCCCCceeecCCCCcee-eee-eCCHH----HHHHHHHHHHHhcCceee-EeEEeeCCCc
Q 005046 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRS 281 (716)
Q Consensus 212 KvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r-~pv-~Lt~e----Ek~iA~ka~kafgq~VcG-fDLLRs~g~s 281 (716)
-|-++|+ +++|.-.|...+ -|+ |.+-+- .|. .|+++ -+++|.++++++|..=+| ||++-.++++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 7777764 466666664321 122 222111 121 36654 367899999999987666 9999988899
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||+|||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999995
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-09 Score=125.81 Aligned_cols=199 Identities=18% Similarity=0.265 Sum_probs=129.0
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|.+|+.++.-.++ .+...++..+. +.-|+.++...+.||.+..++|+++|||+|++..+... ++
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee 695 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EE 695 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HH
Confidence 478999888755444 22233445564 44589999999999999999999999999999988732 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC-CCceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIK 212 (716)
....- ..++.|+|+||..|. ..++.+.+.... ....++... ....++.+|+||||+. ..-+|-
T Consensus 696 ~~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 696 AVEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 22111 134599999998864 233333332110 111122110 1124567999999974 456788
Q ss_pred EEEECCceeEEE-eecCCCCCCceeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 213 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 213 vytVG~~~vhAe-~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
+++.|++++... ... ..+.+.|.|... +|. .|++ +-+++|.++++++|. ..+.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888887765432 111 112345555543 332 5676 456788999999995 4555999999999999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-10 Score=105.72 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHH
Q 005046 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 94 l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (716)
+.||+++++.|+++|||+|.++...... . . ..|+|+||..|. -|.|..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~-~----~~~~viKp~~G~-----------Gg~~i~- 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE---------------P-I----DGPWVIKPRDGA-----------GGEGIR- 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS------------------B-
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc---------------c-c----CCcEEEEeCCCC-----------CCCCeE-
Confidence 4699999999999999999555444110 0 1 489999999996 333332
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCC-CCceeecCCCCce-eeee
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEV-RYPV 248 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~---~vhAe~RKSPv~-DG~vrrN~~gke~-r~pv 248 (716)
.++.- ++... . .....|+||||+ |+-.-+.++... .+-+..|+-=.. ++.++ .+|++ ....
T Consensus 49 ~~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~~~~~~ 114 (161)
T PF02655_consen 49 IVDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGIVPADT 114 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEEES---
T ss_pred EECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccccccCC
Confidence 33322 11111 0 111129999997 555555444432 344445543100 11121 22222 2222
Q ss_pred eCCHHHHHHHHHHHHHh-cC-ceeeEeEEeeCCCcEEEeccC
Q 005046 249 LLTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 249 ~Lt~eEk~iA~ka~kaf-gq-~VcGfDLLRs~g~syV~DVNg 288 (716)
...++-.++|.+++++| |+ ..+|||++.+.+++||+|||-
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEINP 156 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEINP 156 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEES
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEcC
Confidence 34667778899999999 75 599999999999999999993
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=116.83 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=124.6
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEE-EEecCCCccccccccCcc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~-~~~r~~~~~~~~~~~e~~ 133 (716)
+|.+|+... -||. .....++..|..+ ..+.++-.+.+||....+.|.++|||+|++. .+... +
T Consensus 66 id~Vi~~~d--~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVGPD--PVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEECCC--hHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 788998643 3553 3355666667655 4889999999999999999999999998654 44311 1
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccc-cccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyQEFi~~~G~DIK 212 (716)
+....- ..++.|+|+||..+. .|-|+........+....++. ... ...++.+|+||||.-.--.|=
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~-~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRY-AIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHH-HHHHhCCCCcEEEEeecCCceEEEE
Confidence 111111 112489999999987 566665221111111111110 001 133567999999964445666
Q ss_pred EEEECCceeEE-Eeec-CCCCCCceeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhcC------ceeeEeEE
Q 005046 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (716)
Q Consensus 213 vytVG~~~vhA-e~RK-SPv~DG~vrrN~~gke~r~-----pv~Lt~eEk----~iA~ka~kafgq------~VcGfDLL 275 (716)
+|+-|..+..- ..+. -.+.||+.--|+.|=+.-. +-.|++++. +++.+++++++. .+..+++.
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 77766664222 1110 1123666555554333211 112776554 677788899994 45678999
Q ss_pred eeCCCcEEEeccC
Q 005046 276 RCEGRSYVCDVNG 288 (716)
Q Consensus 276 Rs~g~syV~DVNg 288 (716)
-+.+||||+|+|.
T Consensus 279 lt~~gp~ViE~n~ 291 (435)
T PRK06395 279 DTPNGVKVIEINA 291 (435)
T ss_pred EeCCCcEEEEEeC
Confidence 9999999999993
|
|
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=110.72 Aligned_cols=187 Identities=24% Similarity=0.286 Sum_probs=122.3
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
|+-..-.++.||....+++.+.|||+|+.++..... --.+....+.++..+.-...-..+||+||..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888899999999999999999999999955522110 000000111122222111111278999999997
Q ss_pred CCCChHHHHHhhhCCCccccccccc----ccccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~----~~r~~g--syIyQEFi~~---------~G-~DIKvytV----G~~~vhAe~ 225 (716)
+|.|+.++ ...+. ..++.+.. .....+ .||+||||.- .+ -+|||.|+ ++.+++|+.
T Consensus 85 -~G~Gi~~i-~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGILVI-DRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEEEE-EeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 55555422 21110 11111111 111222 8999999863 12 68999999 346789999
Q ss_pred ecCCCCCCceeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-cCcee
Q 005046 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (716)
Q Consensus 226 RKSPv~DG~vrrN~~gke~r~pv~Lt----------------------------------~eEk~iA~ka~kaf-gq~Vc 270 (716)
|-+. .|...-|.|.|++..+|-+. ++-.++|.++++.| ++.+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 77777788877655444321 35577889999887 57999
Q ss_pred eEeEEeeCCCcEEEeccCc
Q 005046 271 GFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 271 GfDLLRs~g~syV~DVNgw 289 (716)
|.|+.=+.+||+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999988999999976
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-09 Score=116.35 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=113.8
Q ss_pred CcCeeecccc---CCCcHHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccc
Q 005046 56 ICDCLIAFYS---SGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s---~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~ 129 (716)
.||++++-++ ..- ...+.++..+ ||+.++.++..+++||....++|+++|||+|++. .+. +
T Consensus 74 ~id~I~pg~g~~se~~---~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~-~--------- 140 (449)
T TIGR00514 74 GADAIHPGYGFLSENA---NFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVE-D--------- 140 (449)
T ss_pred CCCEEEeCCCccccCH---HHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcC-C---------
Confidence 5899998762 221 1234455666 4677999999999999999999999999998864 232 1
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
.++....- ..++.|+|+||++|. ..++++..... -....++... +.- . ....++.+|+||||.. +
T Consensus 141 --~~e~~~~~-~~ig~PvvvKP~~g~gs~Gv~~v~~~~---el~~~~~~~~---~~~-~---~~~~~~~vlvEe~i~g-~ 206 (449)
T TIGR00514 141 --EEENVRIA-KRIGYPVIIKATAGGGGRGMRVVREPD---ELVKSISMTR---AEA-K---AAFGNDGVYIEKYIEN-P 206 (449)
T ss_pred --HHHHHHHH-HHhCCCEEEEeCCCCCCCccEEECCHH---HHHHHHHHHH---HHH-H---HhCCCCCEEEEECCCC-C
Confidence 11221111 234699999999985 12222211110 0111121110 000 0 0012456999999953 4
Q ss_pred ceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee-
Q 005046 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC- 277 (716)
Q Consensus 209 ~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs- 277 (716)
+.+-|-+++ ++.++...|-. .+.+. +.+-. .-+..|++ +-+++|.++++++|.. ++.||++-+
T Consensus 207 ~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~ 280 (449)
T TIGR00514 207 RHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK 280 (449)
T ss_pred eEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC
Confidence 555554444 34444432211 01110 11111 11124565 4456789999999974 455999987
Q ss_pred CCCcEEEeccC
Q 005046 278 EGRSYVCDVNG 288 (716)
Q Consensus 278 ~g~syV~DVNg 288 (716)
+|.+||+|||.
T Consensus 281 ~g~~~viEiNp 291 (449)
T TIGR00514 281 NGEFYFMEMNT 291 (449)
T ss_pred CCCEEEEEEEC
Confidence 56689999993
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=108.41 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=147.2
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccC--CchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iN--dl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|+++|.+..-+ |.+-.+-|+..|.-++= +.++..++.||...|+.++++|||+|.+..++.- ..|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4689999888887 88888889998876554 6889999999999999999999999999998732 1222222
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc------------ccCcceEEe
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~------------r~~gsyIyQ 201 (716)
..+...| .|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|++
T Consensus 139 ~~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 2233444 88999999998 34444433333322233344333222 135668999
Q ss_pred eccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEe-eCC
Q 005046 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (716)
Q Consensus 202 EFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLR-s~g 279 (716)
||++-.---|=|.+-++++++|-.|+= . |.+..+.-.++--++|.++|++||++ +.+|..-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 999986666667777799998888865 1 25677888899999999999999996 56899988 678
Q ss_pred CcEEEeccC
Q 005046 280 RSYVCDVNG 288 (716)
Q Consensus 280 ~syV~DVNg 288 (716)
.|+++|+|-
T Consensus 271 ~p~LLEINp 279 (329)
T PF15632_consen 271 NPKLLEINP 279 (329)
T ss_pred CEEEEEeCC
Confidence 899999994
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-09 Score=127.45 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=120.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|+++|-|+ |-- ....+.++..+ +|+-++.++..+++||..+.+++.++|||+|+.....-. +.
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~----------~~ 141 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPE----------TM 141 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcC----------CH
Confidence 4688988653 321 12234445555 566788999999999999999999999999986532101 01
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccc---cccccccCcceEEeeccCCCCc
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p---~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
++.... ...++.|+|+||..|. -|.|++ .++....-...++- +....-.++.+++||||.. ++
T Consensus 142 eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~r 207 (1143)
T TIGR01235 142 EEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PR 207 (1143)
T ss_pred HHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-Ce
Confidence 111111 1235699999999985 223332 22211100000000 0000012567899999953 67
Q ss_pred eeEEEEECCc---eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC-CC
Q 005046 210 DVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-GR 280 (716)
Q Consensus 210 DIKvytVG~~---~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~-g~ 280 (716)
.|.|-++|+. ++|...|-..+. ||+..--|..-...|++ +-.++|.++++++|.. ++.||++... |.
T Consensus 208 eIeVqVlgD~~G~vv~l~eRdcsvq----rr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~ 283 (1143)
T TIGR01235 208 HIEVQLLGDKHGNVVHLFERDCSVQ----RRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGK 283 (1143)
T ss_pred EEEEEEEEeCCCCEEEEEecccccc----ccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCc
Confidence 7888888654 677776744211 11111112221124555 4557899999999954 6669999875 57
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+|++|||-
T Consensus 284 ~yfIEVNP 291 (1143)
T TIGR01235 284 FYFIEVNP 291 (1143)
T ss_pred EEEEEeec
Confidence 99999993
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=123.39 Aligned_cols=196 Identities=13% Similarity=0.183 Sum_probs=124.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|.+|+-++...++ .+..-++..+ |+.-++.++...+.||.+..++|+++|||+|++..+... ++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HH
Confidence 378898877665433 2223334455 455688999999999999999999999999999988722 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
.... -..++.|+|+||..|. ..+++|.+... ...+.++.. ...++.+|+||||.-..-+|-+
T Consensus 697 ~~~~-~~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAF-AKRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHH-HHhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 2221 1234699999999874 23333333221 111222211 1235679999999533455555
Q ss_pred EEECCceeE-E-EeecCCCCCCceeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 214 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 214 ytVG~~~vh-A-e~RKSPv~DG~vrrN~~gke~r---~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
+.=|..+.. + +.+..+ ...|.|... .|..|++ +-+++|.++++++|. .++.||++...+++||
T Consensus 760 i~dg~~v~i~~i~e~~e~-------~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIEQ-------AGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEeec-------cCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 555554322 2 222111 223545432 2456775 456788999999984 4777999999999999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||-
T Consensus 833 iEiNp 837 (1068)
T PRK12815 833 LEVNP 837 (1068)
T ss_pred EEEeC
Confidence 99994
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=112.57 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=129.1
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++.+-..-++-. -....++++.+ ||+=.+..+..++.||..+-++|+++|||+|++..+.+..... +.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~------~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKR------EPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhccc------ChH
Confidence 478776654322223 36777888888 5666789999999999999999999999999998887431000 001
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
..+.-.-..++.|+|+||.++- ..+|.+-... ..|-+.+.. ....+..+|+|||+.. |+.+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~------~el~~a~~~----------a~~~~~~vlVEe~i~~-grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNV------EELRDKISE----------AFLYDTDVFVEESRLG-SREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCH------HHHHHHHHH----------HHhcCCcEEEEeccCC-CEEEE
Confidence 1111011235699999999973 3333322211 112222210 1223556899999863 89999
Q ss_pred EEEECCce---eEE--EeecCCCCCCc--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEE
Q 005046 213 VYTVGPEY---AHA--EARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 213 vytVG~~~---vhA--e~RKSPv~DG~--vrrN~--~gk---e~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLL 275 (716)
|-++|... +.+ ..+.. ..+- +..+- +|+ ...+|..|++ +-+++|.++.+++|. .+|.+|++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998752 111 22222 1121 11122 233 2335667775 456788999999995 47789999
Q ss_pred eeC-CCcEEEeccCc
Q 005046 276 RCE-GRSYVCDVNGW 289 (716)
Q Consensus 276 Rs~-g~syV~DVNgw 289 (716)
-+. |.+||+|||--
T Consensus 741 v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 741 LDEEGNFWLSEMNPI 755 (809)
T ss_pred EcCCCCEEEEEeeCC
Confidence 875 66999999944
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=115.08 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=123.2
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
||++ ++-....+.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dvI-t~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDVL-TVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCEE-EEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 5654 4444455543 458888888767799999999999999999999999999999888622 1111
Q ss_pred eecCeeecCcEEEeecccc--CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
. ....++.|+|+||.+|. ..++++-..... ....++... ..+..+|.|+||+ ....+-|.
T Consensus 150 ~-~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 K-AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H-HHHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 11235699999999753 345554433221 222222221 1234689999994 23667777
Q ss_pred EECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEeccC
Q 005046 215 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 215 tVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~g~-syV~DVNg 288 (716)
+++..- -+...-|+.+.. .+|........|..|++ +-+++|.++++++|.. ++.+|++-+.+| .||+|||.
T Consensus 212 v~r~~~--G~i~~~p~~E~~-~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSRD--GSTRCYPVVETI-HKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECCC--CCEEEecCcccE-EECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 664210 011113433221 22211112235667776 4567789999999743 557898888665 68999995
Q ss_pred cc
Q 005046 289 WS 290 (716)
Q Consensus 289 wS 290 (716)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=109.43 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=115.8
Q ss_pred CCcH-HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeec
Q 005046 67 GYPL-EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (716)
Q Consensus 67 gfpl-~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~ 144 (716)
-+|+ ..+.++++..|.. .-.+..+..+.+||..+-++|+++|||+|++..+... + +...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~---~------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP---A------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---H------HHHHHHH----HcC
Confidence 3555 5667777777655 4478889999999999999999999999998877522 1 1122222 345
Q ss_pred CcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc--ccc-ccCcceEEeeccCCCCceeEEEEE--CCc
Q 005046 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDVKVYTV--GPE 219 (716)
Q Consensus 145 kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~--~~~-r~~gsyIyQEFi~~~G~DIKvytV--G~~ 219 (716)
.|+|+||..+. .|-|+. +.+........+..-. ..+ ..+..+|+||||. |..+-|.++ |..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 89999999764 333432 2211110000000000 011 1245799999997 445555332 333
Q ss_pred eeEE-E-eecCCCCCCceeecCCCCceeeeee-CCHHHHH-HHHH-------HHHHhcCceee---EeEEee--CCCcEE
Q 005046 220 YAHA-E-ARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MARE-------VCIAFRQAVCG---FDLLRC--EGRSYV 283 (716)
Q Consensus 220 ~vhA-e-~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~-iA~k-------a~kafgq~VcG---fDLLRs--~g~syV 283 (716)
+... + .....+.||+..-|+.|-+.-.|.. ++++..+ ++.. +.++.|....| +|++-+ +|++||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3321 1 1233456888888887655444553 7775444 3333 33466776555 676665 466999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|+|.
T Consensus 284 LE~N~ 288 (434)
T PLN02257 284 LEYNV 288 (434)
T ss_pred EEEEC
Confidence 99994
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=112.46 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=117.5
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~ 130 (716)
.+|+++|.|+ |-. ....+.++..+ +|+-++.++..+++||....++|.++|||+|++. .+. +
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~-~---------- 143 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVA-S---------- 143 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcC-C----------
Confidence 4688988662 321 12234444555 5778899999999999999999999999998875 332 1
Q ss_pred CccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... ...++.|+|+||..|. ....++.-.+.- .....|+... ++-. ..+ .++.+++||||+. |+.
T Consensus 144 -~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 1222221 1235699999999985 122222211110 0111222110 0000 011 2567899999976 677
Q ss_pred eEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC--CCc
Q 005046 211 VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GRS 281 (716)
Q Consensus 211 IKvytVG~~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~--g~s 281 (716)
|-|-++|+. ++|.-.|..-+ . |++..--+..-+..|++ +-+++|.++++++|.. ++.||++-.. |.+
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~~-~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~ 287 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECSL-Q---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEF 287 (467)
T ss_pred EEEEEEeCCCcEEEEEEeeccc-c---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCE
Confidence 777777653 45554443211 0 01100000011123554 5567899999999986 3458998763 568
Q ss_pred EEEeccC
Q 005046 282 YVCDVNG 288 (716)
Q Consensus 282 yV~DVNg 288 (716)
||+|||.
T Consensus 288 ~~iEvNp 294 (467)
T PRK12833 288 YFIEMNT 294 (467)
T ss_pred EEEEEEC
Confidence 9999995
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-08 Score=99.98 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=100.5
Q ss_pred HHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCC
Q 005046 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (716)
Q Consensus 103 iL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~ 181 (716)
+|+++|||||+++++.+... ..+.+.-.-..++.|+|+||..+ +..+|.+-.. ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~---------~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~------~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNED---------DSDSIEKILEDLGFPLFVKPASEGSSIGISKVHN------EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSH---------HHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESS------HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEecccc---------cchhHHHHHhhcCCCEEEEECCCCccEEEEEcCC------HHHHHHHHHH-
Confidence 58899999999999996521 11111111234569999999985 5444443221 1223333321
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCCceee------cCCCCceeeeeeCCH
Q 005046 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMR------NPDGKEVRYPVLLTP 252 (716)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrr------N~~gke~r~pv~Lt~ 252 (716)
..+-+..+|+|||| .|+++-|-++| ..+...+....+ ++-+.- +........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12345678999999 79999999999 666666666664 333321 113334455666765
Q ss_pred ----HHHHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEeccCcccc
Q 005046 253 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWSFV 292 (716)
Q Consensus 253 ----eEk~iA~ka~kafgq-~VcGfDLLRs-~g~syV~DVNgwSFV 292 (716)
+-+++|.+|.+++|. .+|=||+.=+ +|.+||+|||.-+=.
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGl 177 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGL 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcccc
Confidence 456789999999998 7999999877 567999999976433
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-08 Score=100.77 Aligned_cols=85 Identities=32% Similarity=0.428 Sum_probs=57.9
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccCCCCc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~legeLtP 551 (716)
|+||+. ++|+.||+ . |+. ++.+......++.|+||+..||+.||++|+.||+.-.+. .|
T Consensus 17 ~~LT~~G~~q~~~~G~~lr~-~---------y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~~-~~ 81 (242)
T cd07061 17 GELTPFGRQQAFELGRYFRQ-R---------YGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDGW-QP 81 (242)
T ss_pred hhhhHHHHHHHHHHHHHHHH-H---------HHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCccc-CC
Confidence 899988 99999999 4 532 222244567899999999999999999999999986641 23
Q ss_pred ceeeeEecCCcccCCCCcchHHHHHHHHHHHH
Q 005046 552 ILVSLVSKDSSMLDGLDNASIEMEEAKARLNE 583 (716)
Q Consensus 552 ilv~~V~kd~~~ld~~~~a~~~m~~vK~~L~~ 583 (716)
+-+..+..+ .+ ++...++-+.-....
T Consensus 82 ~~i~~~~~~---~~---~~~~~~d~~~~~~~~ 107 (242)
T cd07061 82 IAVHTIPEE---ED---DVSNLFDLCAYETVA 107 (242)
T ss_pred CceEEecCC---Cc---hHHHHHHHCHHHHHh
Confidence 333434322 11 444455555444443
|
Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been |
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=118.24 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=120.4
Q ss_pred CcCeeeccccCCCcHHHHHH-----HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAES-----YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~-----y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++.++....+.-++. .++..+ ++.-.+.++..+++||....+.|.++|||+|++..++..
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 152 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--------- 152 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH---------
Confidence 47999998775545533321 355666 455689999999999999999999999999999988732
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
++.... -..++.|+|+||..|. ..++++...... ...+++.. + .....+.+|+||||+-.
T Consensus 153 ---~e~~~~-~~~ig~PvVVKP~~g~gg~Gv~iv~~~ee---L~~a~~~~------~-----~~s~~~~vlvEe~I~G~- 213 (1066)
T PRK05294 153 ---EEALEV-AEEIGYPVIIRPSFTLGGTGGGIAYNEEE---LEEIVERG------L-----DLSPVTEVLIEESLLGW- 213 (1066)
T ss_pred ---HHHHHH-HHHcCCCeEEEcCCCCCCCCeEEECCHHH---HHHHHHHH------H-----hhCCCCeEEEEEcccCc-
Confidence 122111 1234589999999874 122332221110 11111100 0 11124579999999631
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhcCc--eeeEeE
Q 005046 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFDL 274 (716)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~eE----k~iA~ka~kafgq~--VcGfDL 274 (716)
..+=+-++.+ +.+ ..+.+..| .| .|.|++. .|. .|++++ +++|.++++++|.. +|.||+
T Consensus 214 ~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 214 KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 2333333321 111 12333333 12 3444442 233 577644 58999999999997 999999
Q ss_pred Eee-C-CCcEEEecc
Q 005046 275 LRC-E-GRSYVCDVN 287 (716)
Q Consensus 275 LRs-~-g~syV~DVN 287 (716)
.-+ . |..||+|||
T Consensus 287 ~~~~~~g~~~viEiN 301 (1066)
T PRK05294 287 ALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEECCCCcEEEEEee
Confidence 987 3 558999999
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-08 Score=100.10 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
.+-+|++.-|+ +..+.+.+-|||++|..|+.+ +++|.|.... + - .+-+|+||
T Consensus 94 i~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~-~------------------~----~~k~ViKp 145 (307)
T COG1821 94 IYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWA-E------------------E----PKKYVIKP 145 (307)
T ss_pred HHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCccccc-c------------------C----CceEEecc
Confidence 45567666665 578999999999999999999 9999997532 1 1 26699999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC--------CCceeEEEEECCceeEE
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT--------GGTDVKVYTVGPEYAHA 223 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~--------~G~DIKvytVG~~~vhA 223 (716)
.+|. +|.|.. | +.-.| ++ .|.||||+- .|+++.+.+|...++.-
T Consensus 146 ~dgC-----------gge~i~--~-------~~~~p-------d~-~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~ 197 (307)
T COG1821 146 ADGC-----------GGEGIL--F-------GRDFP-------DI-EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIF 197 (307)
T ss_pred cccC-----------Ccceee--c-------cCCCc-------ch-hhHHHhcCCcceEEEEecCCccccceechhhhhh
Confidence 9997 555542 1 11122 23 799999974 37777777776654432
Q ss_pred EeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhc--CceeeEeEEeeCCCcEEEeccCc
Q 005046 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 224 e~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafg--q~VcGfDLLRs~g~syV~DVNgw 289 (716)
+..+.--.||..+++.+|..+-.+.|+++++-++ -...||||.-+ +.|||+|||.-
T Consensus 198 ---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINpR 255 (307)
T COG1821 198 ---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINPR 255 (307)
T ss_pred ---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CCcEEEEecCC
Confidence 4445566789999999999999999999999998 35789999999 99999999963
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-08 Score=119.24 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=117.9
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEE--EecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~--~~r~~~~~~~~~~~ 130 (716)
.+|++++.| ||-- ....+.++..+ +|+-++.++..+++||....++|.++|||+|+... +. +
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~-s---------- 144 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPID-D---------- 144 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCC-C----------
Confidence 478999865 3221 12233334455 45678999999999999999999999999977653 22 1
Q ss_pred CccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCc
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
.++.... ...++.|+|+||..|. ..++.+..... -....|+... ++ . .....++.+++||||+. ++
T Consensus 145 -~eea~~~-a~~iGyPvVVKP~~GgGGrGv~vV~~~e---EL~~a~~~a~---~e-a---~~~fg~~~vlVEefI~g-~~ 211 (1146)
T PRK12999 145 -IEEALEF-AEEIGYPIMLKASAGGGGRGMRIVRSEE---ELEEAFERAK---RE-A---KAAFGNDEVYLEKYVEN-PR 211 (1146)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCCCCCCeEEeCCHH---HHHHHHHHHH---HH-H---HhhcCCCcEEEecCCCC-Ce
Confidence 1222221 1235699999999985 12222222111 0111222110 00 0 00012567999999974 56
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCC--ceeeeeeCCHH----HHHHHHHHHHHhcCce-eeEeEEeeCC
Q 005046 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPN----EKQMAREVCIAFRQAV-CGFDLLRCEG 279 (716)
Q Consensus 210 DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gk--e~r~pv~Lt~e----Ek~iA~ka~kafgq~V-cGfDLLRs~g 279 (716)
.|-|-++| ++++|--.|-..+ .|| |.+ |..-...|+++ -.++|.++++++|..= +.+|++.+.+
T Consensus 212 ~ieVqvl~D~~G~vv~l~erdcsv----qrr--~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d 285 (1146)
T PRK12999 212 HIEVQILGDKHGNVVHLYERDCSV----QRR--HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD 285 (1146)
T ss_pred EEEEEEEEECCCCEEEEEccccce----eec--CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC
Confidence 67776665 3556654443321 112 222 11111256654 4558999999999854 4499998754
Q ss_pred -CcEEEeccC
Q 005046 280 -RSYVCDVNG 288 (716)
Q Consensus 280 -~syV~DVNg 288 (716)
++|++|||-
T Consensus 286 g~~yfIEINp 295 (1146)
T PRK12999 286 GNFYFIEVNP 295 (1146)
T ss_pred CCEEEEEEEC
Confidence 799999994
|
|
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=101.20 Aligned_cols=239 Identities=18% Similarity=0.232 Sum_probs=153.3
Q ss_pred HHHHHHHhhcCCceEEEEeCc----ceeecCCCc--ccCCcCeeeccccCCCcH-HHHHHHHHhcC-CcccCCchhhhHh
Q 005046 23 MGQILDRLQAFGEFEVIHFGD----KVILEDPIE--KWPICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLL 94 (716)
Q Consensus 23 m~~IL~rL~~~g~feiiiF~d----~vIL~e~ve--~wP~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l 94 (716)
.+++++-|...+ +++.-|.- .+.+++.+. ..-.+|++++.-.-.+-. ..+..|++..+ ||+.....+=...
T Consensus 23 a~~v~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~ 101 (317)
T COG1181 23 AKAVLRALKGFG-YDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGA 101 (317)
T ss_pred HHHHHHHHhhcC-ceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhc
Confidence 677777777643 44433322 223333111 112344433321111112 36778888888 9999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (716)
-|+..+-++++..|+|++..+.+.++.. .+..++-.-..++.|+++||...- --+.+.-.++.|-|-
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~v~~~~d~~--- 168 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFVKPAREG-SSVGRSPVNVEGDLQ--- 168 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEEEcCCcc-ceeeEEEeeeccchH---
Confidence 9999999999999999999999997621 111111122235699999998852 123333333333332
Q ss_pred HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce---eEEEeecCCCCCC-ce----eecCCCCceee
Q 005046 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY---AHAEARKSPVVDG-VV----MRNPDGKEVRY 246 (716)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~---vhAe~RKSPv~DG-~v----rrN~~gke~r~ 246 (716)
+..+. ..+.+...+.|+|+. |+.|.|=+.|... +..--+.-| +| .| ..|++.|+..+
T Consensus 169 --------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l~~~eI~~--~~~~fydye~Ky~~~gg~~~ 233 (317)
T COG1181 169 --------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDYEEQALPLGEIPP--KGEEFYDYEAKYLSTGGAQY 233 (317)
T ss_pred --------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcccceecCceEEec--CCCeEEeeeccccCCCCcee
Confidence 21111 456788889999999 9999999999865 221122222 43 33 26788444333
Q ss_pred ee--eCCH----HHHHHHHHHHHHhc-CceeeEeEEeeC--CCcEEEeccCcc
Q 005046 247 PV--LLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 290 (716)
Q Consensus 247 pv--~Lt~----eEk~iA~ka~kafg-q~VcGfDLLRs~--g~syV~DVNgwS 290 (716)
.+ .||+ +-+++|.+|.+|+| ..+||+|++-.. |..|++|||.-+
T Consensus 234 ~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 234 DIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 22 3665 56889999999999 999999999988 789999999654
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=113.41 Aligned_cols=198 Identities=14% Similarity=0.221 Sum_probs=123.2
Q ss_pred CcCeeeccccCCCcHHHH---HHHHHhc----------CCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCC
Q 005046 56 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~ 122 (716)
.+|++|+-|+...|+.-| .+++... =++...+.++..++.||.+.-++|+++|||+|++..+...
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~-- 726 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSE-- 726 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCH--
Confidence 379999999877776322 2223222 2467789999999999999999999999999999877621
Q ss_pred ccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEe
Q 005046 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 201 (716)
Q Consensus 123 ~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQ 201 (716)
++.... -..++.|+|+||..|. ..++.|.+...+ ....++... ....++.+|+|
T Consensus 727 ----------eea~~~-a~~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a~-----------~~~~~~~vlVE 781 (1102)
T PLN02735 727 ----------ADALAI-AKRIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETAV-----------EVDPERPVLVD 781 (1102)
T ss_pred ----------HHHHHH-HHhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------HhcCCCCEEEE
Confidence 222221 1235699999999974 233333332211 111111110 11235579999
Q ss_pred eccCCCCceeEEEEECC---ceeE--EEeecCCCCCCceeecCCCCceeeee---eCCHHH----HHHHHHHHHHhcC-c
Q 005046 202 EFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-A 268 (716)
Q Consensus 202 EFi~~~G~DIKvytVG~---~~vh--Ae~RKSPv~DG~vrrN~~gke~r~pv---~Lt~eE----k~iA~ka~kafgq-~ 268 (716)
+||.. |.-+=|-++++ +++. .+.+.- +...|-|+....+ .|+++. +++|.++++++|. .
T Consensus 782 efI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G 853 (1102)
T PLN02735 782 KYLSD-ATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCG 853 (1102)
T ss_pred EecCC-cEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 99953 66666666653 2221 111111 1223545443333 577554 5679999999985 4
Q ss_pred eeeEeEEee-CCCcEEEeccC
Q 005046 269 VCGFDLLRC-EGRSYVCDVNG 288 (716)
Q Consensus 269 VcGfDLLRs-~g~syV~DVNg 288 (716)
++.+|++-+ +|++||+|||-
T Consensus 854 ~~~vqf~v~~dg~~yviEiNp 874 (1102)
T PLN02735 854 LMNCQYAITPSGEVYIIEANP 874 (1102)
T ss_pred eeeEEEEEcCCCcEEEEEEeC
Confidence 777999985 57799999994
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=114.58 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=125.1
Q ss_pred CcCeeeccccCCCcHHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++-++...++.-++ .-++..+ |+.-++..+..++.||...-++|.++|||+|++..+... +
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~---e----- 169 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL---D----- 169 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---H-----
Confidence 6899999877555553233 2345666 577889999999999999999999999999999888622 0
Q ss_pred cCccceeeecCeeec-CcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC
Q 005046 130 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 207 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~ 207 (716)
+..+.+. .++ .|+|+||..|. ..+++|-+.... ....++..- ....++.+|+||||.-
T Consensus 170 -ea~~~~~----~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a~-----------~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 170 -ECFEIAE----DIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAGL-----------AASITSQVLVEKSLLG- 229 (1102)
T ss_pred -HHHHHHH----HhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEecCC-
Confidence 1111121 233 89999999853 234444332211 111121110 1124667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC--ceeeEe
Q 005046 208 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 273 (716)
Q Consensus 208 G~DIKvytVG~---~~--vhAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~kafgq--~VcGfD 273 (716)
..-+=|=++++ +. +..+.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24455555543 22 233444444 23 2444432 244 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecc
Q 005046 274 LLRC--EGRSYVCDVN 287 (716)
Q Consensus 274 LLRs--~g~syV~DVN 287 (716)
+.-+ +|..||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9876 4668999999
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=94.83 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=104.0
Q ss_pred CCchhhhHhhhHHHHH----HHHH---hCCCCC-CcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCc
Q 005046 86 NELEPQHLLHDRRKVY----EQLE---KYGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~l----qiL~---~~gIP~-P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedH 157 (716)
|+|.+.+.+.||--++ +|-. ....|+ +.|.+-+ ..+.+.-- ..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn-------------h~em~s~~----~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN-------------HREMLSAP----RFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS-------------GGGGCS-S----SSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC-------------hhhhccCC----CCCEEEEEcccc--
Confidence 8899999999993222 2222 334443 3333333 23333322 379999986654
Q ss_pred ceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCcee
Q 005046 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vr 236 (716)
+|-|-. |+.|....-|-. ..+. .+.=+-.|-||.. --||||--||++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GKv----kv~n~~~~qDi~-sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGKV----KVDNQQDFQDIA-SLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTEE----EE-SHHHHHHHH-HHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeEE----EEccHHHHHHHH-HHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 565643 444443222111 1223 3333456778855 6899999999997 89999995 99999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeC-CCcEEEeccCccc
Q 005046 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCE-GRSYVCDVNGWSF 291 (716)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk~iA~ka~kaf-gq~VcGfDLLRs~-g~syV~DVNgwSF 291 (716)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-++ |+-|++|||+-|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 4566778999999999999999999 9999999999998 5588999998543
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.8e-08 Score=108.25 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceee-ecCeeecCcEEEe
Q 005046 73 AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEK 150 (716)
Q Consensus 73 ai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~-v~G~~~~kPfVeK 150 (716)
..+.++..| ||+.-+..+..++.||..+.++++++|||+|++..+..+. .++... +....++.|+|+|
T Consensus 118 iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVVK 187 (493)
T PRK06524 118 TEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVVQ 187 (493)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEEE
Confidence 334444555 5669999999999999999999999999999998764221 111111 1111367999999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCcee--EEEEECC-ceeEEEee
Q 005046 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV--KVYTVGP-EYAHAEAR 226 (716)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DI--KvytVG~-~~vhAe~R 226 (716)
|..|. .+++++...... ...++.++ -.+..+++|+||. |.-+ =|++-+. .+++...+
T Consensus 188 P~~GGSS~GV~~Vkn~eE---Le~a~~~~--------------~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~ 248 (493)
T PRK06524 188 TPYGDSGSTTFFVRGQRD---WDKYAGGI--------------VGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMT 248 (493)
T ss_pred ECCCCCCcCEEEeCCHHH---HHHHHHHh--------------cCCCCEEEEeccC--cEEEEEEEEEeCCCCEEecccc
Confidence 99874 344444333211 11111111 1124478899995 4332 2343332 22221111
Q ss_pred cCCCCCCceeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhc----CceeeEeEEee--CCCcEEEecc
Q 005046 227 KSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (716)
Q Consensus 227 KSPv~DG~vrrN~~gke---~r~pv~Lt~----eEk~iA~ka~kafg----q~VcGfDLLRs--~g~syV~DVN 287 (716)
. ++-..++. .-.+|. ...|..|++ +-+++|.+++++++ ..+++||++-+ +|+.|++|||
T Consensus 249 e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 249 S-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred c-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 1 11000121 011222 234778888 77789999999984 68899999998 4679999999
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=113.02 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=119.2
Q ss_pred CcCeeeccccCCCcHHHH-----HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++.++-..++.-+ ..-++..|. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 479999988754444212 224556674 55588999999999999999999999999999888622
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-cc--ccCcceEEeeccCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~--r~~gsyIyQEFi~~ 206 (716)
++.... ...++.|+|+||..|. .|.|+. + +.|.. ++..-+. .. ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 222221 1235699999999874 233332 1 11111 1110000 01 12357899999974
Q ss_pred CCceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCce--eeee-eCCHHH----HHHHHHHHHHhcCc-eeeEe
Q 005046 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNE----KQMAREVCIAFRQA-VCGFD 273 (716)
Q Consensus 207 ~G~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~--r~pv-~Lt~eE----k~iA~ka~kafgq~-VcGfD 273 (716)
. ..+=+-++++ +.+ ..+.+-.| .| .|-|++ -.|. .|++++ +++|.++++++|.. +|.||
T Consensus 212 ~-~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 W-KEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred c-eEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 1 2333333321 222 22344344 22 233333 2344 377754 46889999999984 78899
Q ss_pred EEee--CCCcEEEeccC
Q 005046 274 LLRC--EGRSYVCDVNG 288 (716)
Q Consensus 274 LLRs--~g~syV~DVNg 288 (716)
+.-+ +++.||+|||-
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 35689999993
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=101.47 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=116.3
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+.... |+. .+...++..|..++ -+..+-.+.+||..+-++|.++|||+|++..+... + +..+
T Consensus 69 iD~Vv~g~E~--~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---~------ea~~ 137 (426)
T PRK13789 69 FDLIVVGPED--PLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---S------SSLS 137 (426)
T ss_pred CCEEEECCch--HHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---H------HHHH
Confidence 6777754333 342 23344556665443 23346668899999999999999999998776521 0 1122
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
++. .++.|+|+||..+. ..++++.....+ ..+.++.+-.. +.|. ..+..+|+||||. |+-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEE
Confidence 222 24589999999764 344444333221 11111111000 1110 1234799999997 444444
Q ss_pred EEE--CCceeE---EEeecCCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---c---CceeeEeEEe
Q 005046 214 YTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLR 276 (716)
Q Consensus 214 ytV--G~~~vh---Ae~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kaf---g---q~VcGfDLLR 276 (716)
.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-
T Consensus 202 ~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i 280 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI 280 (426)
T ss_pred EEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE
Confidence 444 333221 11111 224676666777666666765 476322 3445556555 4 4567789888
Q ss_pred eCCC-cEEEeccCc
Q 005046 277 CEGR-SYVCDVNGW 289 (716)
Q Consensus 277 s~g~-syV~DVNgw 289 (716)
+++| +||+|+|.=
T Consensus 281 t~~g~~~vlE~n~R 294 (426)
T PRK13789 281 SPEGEPKVVEFNCR 294 (426)
T ss_pred cCCCCEEEEEEecC
Confidence 8766 999999974
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=113.34 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=117.2
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCc-EEEEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~-t~~~~r~~~~~~~~~~~e 131 (716)
.+|++|+-|+ |-. ....+.++..+. |+-++.++..+++||....++|+++|||+|. +.++. +
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~-s----------- 138 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLS-S----------- 138 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecC-C-----------
Confidence 4678887653 321 223556667774 6678899999999999999999999999865 54444 1
Q ss_pred ccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D 210 (716)
.++.... -..++.|+|+||..|. ..++.+..... -....|+.+.+.+..+ + .+..+++||||.. |+-
T Consensus 139 ~dea~~~-a~~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~g-~~e 206 (1201)
T TIGR02712 139 LDEALEA-AKEIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGESF------F-GDAGVFLERFVEN-ARH 206 (1201)
T ss_pred HHHHHHH-HHhcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHHh------c-CCCcEEEEecCCC-CEE
Confidence 1222211 1234699999999985 23333332211 1222333332111000 0 1345899999974 566
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC--CC
Q 005046 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GR 280 (716)
Q Consensus 211 IKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~--g~ 280 (716)
+-|.++|+ .+++--.|..- .-++|...-+..-+..|++ +-.++|.++++++|.. ++.+|++-+. ++
T Consensus 207 veV~v~~Dg~g~vv~lg~rd~s----~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~ 282 (1201)
T TIGR02712 207 VEVQIFGDGKGKVVALGERDCS----LQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE 282 (1201)
T ss_pred EEEEEEECCCCeEEEeeEEEee----eEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC
Confidence 77766653 34443333210 0111111111111112443 4566888999999865 7779999864 67
Q ss_pred cEEEeccC
Q 005046 281 SYVCDVNG 288 (716)
Q Consensus 281 syV~DVNg 288 (716)
+||+|||.
T Consensus 283 ~y~lEVNp 290 (1201)
T TIGR02712 283 FYFLEVNT 290 (1201)
T ss_pred EEEEEEEC
Confidence 99999995
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=107.13 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=121.3
Q ss_pred CcCeeeccccCCCcHHHHH--H---HHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAE--S---YATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai--~---y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++|+.++....+.-+. . .++..+.. .-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 5899999876443443332 1 45566643 4578999999999999999999999999999988732
Q ss_pred cCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G 208 (716)
++.... -..++.|+|+||..|. ..++++.+.... ...+++..- .....+.+|+|||++- .
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~gG~Gv~iv~~~eE---L~~a~~~~~-----------~~s~~~~vLVEe~I~G-~ 213 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTLGGTGGGIAENLEE---LEQLFKQGL-----------QASPIHQCLLEESIAG-W 213 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEccCC-C
Confidence 121111 1234589999999874 222322221110 111111110 0112357999999963 1
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC-ceeeEeEE
Q 005046 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~kafgq-~VcGfDLL 275 (716)
..+=|-++.+ +.+ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 2344444432 222 22233333 22 2223221 233 47765 36788999999998 57889988
Q ss_pred eeC--CCcEEEeccCccccccchhh
Q 005046 276 RCE--GRSYVCDVNGWSFVKNSYKY 298 (716)
Q Consensus 276 Rs~--g~syV~DVNgwSFVK~n~kY 298 (716)
-+. +++||+||| +=+-++..+
T Consensus 287 l~~~~g~~~ViEIN--PR~~~s~~l 309 (1068)
T PRK12815 287 LDPKSKQYYLIEVN--PRVSRSSAL 309 (1068)
T ss_pred EECCCCcEEEEEEe--cCcccchhh
Confidence 763 569999999 333344444
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=98.16 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=116.7
Q ss_pred cCeeeccccCCCcHH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCC-cEEEEecCCCccccccccCcc
Q 005046 57 CDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P-~t~~~~r~~~~~~~~~~~e~~ 133 (716)
+|++|+...+ |+. .+...++..+.. .-++..+-.+.+||..+-++|+++|||+| .+..+. + .+
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~-~-----------~~ 135 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFY-D-----------VE 135 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeC-C-----------HH
Confidence 6888875443 442 344455566654 45888999999999999999999999997 454443 2 12
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCC-Ccccc--------cc---ccccc-ccCcceEE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RSSEF--------HP---DVRRV-RREGSYIY 200 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign-~sS~~--------~p---~~~~~-r~~gsyIy 200 (716)
++...- ..+ .|+|+||..+. .|-|+. +...... .++.+ +. +...+ ..+..+|+
T Consensus 136 ea~~~~-~~~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 136 EAAKFI-EYG-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHHHH-hhc-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 222211 112 49999999986 454553 2221110 00000 00 00011 13567999
Q ss_pred eeccCCCCceeEEEEECCceeE-EEeecC-CCCCCceeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhcCc-
Q 005046 201 EEFMPTGGTDVKVYTVGPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQA- 268 (716)
Q Consensus 201 QEFi~~~G~DIKvytVG~~~vh-Ae~RKS-Pv~DG~vrrN~~gke~r~p----v~-Lt~eE----k~iA~ka~kafgq~- 268 (716)
||||.-.--.|=+++-|..+.. ...+.- .+.+|+.--|+.|=+.-.| +. +++++ .+++.++.++++..
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~ 281 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKET 281 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999843334455554544331 112111 1236666667766554334 33 34433 34577777777643
Q ss_pred ------eeeEeEEee-CCCcEEEeccC
Q 005046 269 ------VCGFDLLRC-EGRSYVCDVNG 288 (716)
Q Consensus 269 ------VcGfDLLRs-~g~syV~DVNg 288 (716)
++-+++.-+ .+||+|+|+|.
T Consensus 282 g~~~~G~l~~elmlt~~~GP~vIE~n~ 308 (486)
T PRK05784 282 GERYVGVISGQMMLTELWGPTVIEYYS 308 (486)
T ss_pred CCCcEEEEEEEEEEecCCCcEEEEEec
Confidence 445688888 89999999994
|
|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-06 Score=87.17 Aligned_cols=193 Identities=19% Similarity=0.258 Sum_probs=118.5
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCC-CC--CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc
Q 005046 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (716)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~g-IP--~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge 155 (716)
.++....|. ...|||.+|+.|.+.. +. +|.|...... + +...++.- .+-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---~------~l~~~L~~-----y~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---E------DLREMLNK-----YKSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---H------HHHHHHHH-----CCEEEEEeCCCC
Confidence 345556665 3479999999999864 44 7888777631 1 12222221 245889999996
Q ss_pred CcceeEEeccCCCChHHHHHhhhCC-Cccccc------ccccccccCcceEEeeccCC---CC--ceeEEEEEC--C---
Q 005046 156 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 218 (716)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrkign-~sS~~~------p~~~~~r~~gsyIyQEFi~~---~G--~DIKvytVG--~--- 218 (716)
.+..|+.=...++|..--++.-+. ....+. .-+........||+|+.|+- +| -|+||++-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 444444433333322100111110 000111 00011125669999999985 45 899999982 2
Q ss_pred ceeEEEeecCCCCCCceeecCCCCceeeeee-----------CCHHHHHHHH----HHHHHhcC--ceeeEeEEeeC-CC
Q 005046 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMAR----EVCIAFRQ--AVCGFDLLRCE-GR 280 (716)
Q Consensus 219 ~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-----------Lt~eEk~iA~----ka~kafgq--~VcGfDLLRs~-g~ 280 (716)
.+....+|.++ .|.+-+|.++||...++. +..+-+++|. .+.+.||. .-.|+||-=.. |+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 56788999998 999999999888765541 2222334444 44455674 67899998875 56
Q ss_pred cEEEeccCccccc
Q 005046 281 SYVCDVNGWSFVK 293 (716)
Q Consensus 281 syV~DVNgwSFVK 293 (716)
..++|||+=+-..
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 7799999876543
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=88.84 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=128.7
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCCcccCC--chhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNE--LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~iNd--l~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e 131 (716)
.+|+++|.|+ |-- .+..+-++..+ ++..- .+....++||...-++++++|||+|+.. ++. ..+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs----~~~------~~~ 140 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS----DGA------VAD 140 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCC----CCC------cCC
Confidence 5789999887 433 44555555666 44443 4667789999999999999999999986 211 001
Q ss_pred ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCC
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G 208 (716)
.++... .-+.++.|+|+||..|- -|.|+ |+++....-...|..-.. ....++.++.|+|+.. -
T Consensus 141 ~ee~~~-~a~~iGyPVivKa~~Gg-----------Gg~G~-r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~ 206 (449)
T COG0439 141 NEEALA-IAEEIGYPVIVKAAAGG-----------GGRGM-RVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-P 206 (449)
T ss_pred HHHHHH-HHHHcCCCEEEEECCCC-----------CcccE-EEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-C
Confidence 223333 12334599999999986 34454 355544322222221110 0114777999999987 3
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee-CC
Q 005046 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EG 279 (716)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~----iA~ka~kafgq~VcG-fDLLRs-~g 279 (716)
+-|=+-+.|+ .++|.-.|-. +.=||+-.=.|..-...++++.+. .|.+++++.|-.-|| |..|=. ++
T Consensus 207 rhievqv~gD~~g~~i~l~eRdc----siqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~ 282 (449)
T COG0439 207 RHIEVQVLGDGHGNVIHLGERDC----SIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNG 282 (449)
T ss_pred ceEEEEEEEcCcccEEEEEeccC----CCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Confidence 4555666665 4588888863 234555555666645556665554 467888888777776 788888 49
Q ss_pred CcEEEecc
Q 005046 280 RSYVCDVN 287 (716)
Q Consensus 280 ~syV~DVN 287 (716)
++|++|+|
T Consensus 283 ~~yfiEmN 290 (449)
T COG0439 283 EFYFIEMN 290 (449)
T ss_pred CEEEEEEe
Confidence 99999999
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.7e-05 Score=80.67 Aligned_cols=150 Identities=25% Similarity=0.386 Sum_probs=102.0
Q ss_pred cccCCch-hhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeE
Q 005046 83 FLVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (716)
Q Consensus 83 ~~iNdl~-~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~I 161 (716)
+.=|+.. ....+-+|.+.|..|...|.|.|.+.-.. -+..+ .+|.|+||++|.
T Consensus 107 v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e----------------~~~~g----ekt~IlKPv~Ga------ 160 (389)
T COG2232 107 VAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE----------------PLEEG----EKTLILKPVSGA------ 160 (389)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------------hhhhc----ceeeEEeeccCC------
Confidence 3345655 77888889999999999999988763221 11112 399999999995
Q ss_pred EeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC---------CCceeEEEEECCceeEEEeecCCCCC
Q 005046 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVD 232 (716)
Q Consensus 162 Yyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~---------~G~DIKvytVG~~~vhAe~RKSPv~D 232 (716)
||. ++.+. ++-+. ++ .-+|.||||+- +|+|....+|...++-
T Consensus 161 -------GG~---~el~~-----~~Ee~--~~--~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~---------- 211 (389)
T COG2232 161 -------GGL---VELVK-----FDEED--PP--PGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID---------- 211 (389)
T ss_pred -------Cce---eeecc-----ccccc--CC--cceehhhhcCCceeEEEEEecCcceEEEEEeeeeec----------
Confidence 342 33331 22111 01 67899999973 3566666666555443
Q ss_pred CceeecCC-----CCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccC
Q 005046 233 GVVMRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 233 G~vrrN~~-----gke~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNg 288 (716)
|. +.+-. |-=+.+|+....|-.++|..+..-||+. --|||+|-...||||+|||=
T Consensus 212 ~~-~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNP 272 (389)
T COG2232 212 GL-RGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNP 272 (389)
T ss_pred cc-ccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEecC
Confidence 21 11111 4445667777767788999999999974 67999999999999999995
|
|
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=79.12 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=101.6
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcc
Q 005046 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (716)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHn 158 (716)
+..| +.-+..+.....||....+.|.++|||+|++ +. + .++ +..|+|+||..|.+ +
T Consensus 107 ~~~p-~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~-~-----------~~~--------i~~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVP-MFGNREILRWEADRDKERKLLEEAGIRIPRK--YE-S-----------PED--------IDRPVIVKLPGAKG-G 162 (358)
T ss_pred CCCC-cCCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--eC-C-----------HHH--------cCCCEEEEeCCCCC-C
Confidence 3344 3335668889999999999999999999996 22 1 111 23799999988752 3
Q ss_pred eeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeecCCC-CCCc
Q 005046 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 234 (716)
Q Consensus 159 i~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV---G~~~vhAe~RKSPv-~DG~ 234 (716)
-.++...+..- ....++.+-++. . +.....+|+||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~E-l~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPEE-FKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHHH-HHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 33333333221 222333321110 1 1125779999999742223335653 55555666555433 4566
Q ss_pred eee--c---CCCCceeee------eeCC----HHHHHHHHHHHHH----h-cCcee--eEeEEeeCCC-cEEEeccCcc
Q 005046 235 VMR--N---PDGKEVRYP------VLLT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCEGR-SYVCDVNGWS 290 (716)
Q Consensus 235 vrr--N---~~gke~r~p------v~Lt----~eEk~iA~ka~ka----f-gq~Vc--GfDLLRs~g~-syV~DVNgwS 290 (716)
+|- + ..+.+-.++ +.+. ++-.+++.+++++ + +..+| .+|...+.++ .||+|||+=-
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 651 1 112222222 2222 4555677777777 5 44444 5677776555 6999998743
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.1e-05 Score=81.89 Aligned_cols=165 Identities=21% Similarity=0.292 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||.++.+++++.|||+|+....--. +.++.+.+ -+.++.|+++||..|- ||-+++++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~-a~~iGyPVliKas~gg------------GG~gm~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEF-AEEIGYPVLIKASAGG------------GGRGMRIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHH-HHHH-SSEEEEETTSS------------TTTSEEEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHH-HHhcCCceEEeecccc------------cccccccc
Confidence 7999999999999999988665211 12333432 2245699999999984 33222233
Q ss_pred hhhCCCccccccccccc---ccCcceEEeeccCC-CCceeEEEEECC-ceeEEEeecCCCCCCceeecCCCC--ceeeee
Q 005046 176 RKVGNRSSEFHPDVRRV---RREGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVRYPV 248 (716)
Q Consensus 176 rkign~sS~~~p~~~~~---r~~gsyIyQEFi~~-~G~DIKvytVG~-~~vhAe~RKSPv~DG~vrrN~~gk--e~r~pv 248 (716)
.....-.+.+....... =.++.+++|+|+.. .--+|-|..=|. +++|.-.|-.- ..+ -+|+ +..=+.
T Consensus 58 ~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P~~ 131 (211)
T PF02786_consen 58 HNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAPAQ 131 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES-S
T ss_pred cchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEeecc
Confidence 32211111111100000 02788999999987 444444433322 34555455431 111 1122 334355
Q ss_pred eCCHHHH----HHHHHHHHHhcC-ceeeEeEEee--CCCcEEEeccCc
Q 005046 249 LLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (716)
Q Consensus 249 ~Lt~eEk----~iA~ka~kafgq-~VcGfDLLRs--~g~syV~DVNgw 289 (716)
.||++++ ++|.++|+++|. .+|-|-.+-. ++..||+|||--
T Consensus 132 ~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 132 TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 7888665 478999999986 4788899998 688999999964
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00062 Score=74.87 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccC-cceeEEeccCCCChHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKE 173 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~r 173 (716)
+|++..|.+|.++|||+|+++-.. ..+..|+|+||..|.- -...++.-++ -..
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~p----------------------~eId~PVIVKp~~asG~~srG~f~a~s----~eE 178 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKDP----------------------EEIDRPVIVKLPEAKRRLERGFFTASS----YED 178 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecCc----------------------cccCccEEEEECCCCCccccCeEeeCC----HHH
Confidence 567889999999999999997621 0124899999999960 0111111111 011
Q ss_pred HHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CC--ceeEEEeecCCCCCCceee------------
Q 005046 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR------------ 237 (716)
Q Consensus 174 Lfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytV--G~--~~vhAe~RKSPv~DG~vrr------------ 237 (716)
|.++....+ ......-.....+++||||.-.--.+-+|.. -+ +++..-.|----+||.+|-
T Consensus 179 l~~~a~~l~---~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p 255 (366)
T PRK13277 179 FYEKSEELI---KAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEP 255 (366)
T ss_pred HHHHHHhhh---hcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCC
Confidence 211111000 0000000122567899999742233335544 34 4444554422225776652
Q ss_pred -cCCCCceeeeeeC----CHHHHHHHHHHHHHhcC-----ce--eeEeEEeeC-CCcEEEeccC
Q 005046 238 -NPDGKEVRYPVLL----TPNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVNG 288 (716)
Q Consensus 238 -N~~gke~r~pv~L----t~eEk~iA~ka~kafgq-----~V--cGfDLLRs~-g~syV~DVNg 288 (716)
+.--|+ .|+.+ -++-.+++.+++++++. .+ ..+|...+. +..||+|||.
T Consensus 256 ~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp 317 (366)
T PRK13277 256 RYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP 317 (366)
T ss_pred ceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC
Confidence 112222 23333 35667788888899883 22 345666655 6688999993
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=71.97 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=113.2
Q ss_pred CcCeeeccccCCCcHHHHHHHHHh-----cC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
+.|++++-++-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++..
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~--------- 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSV--------- 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccH---------
Confidence 459999999999999666653332 12 4578999999999999999999999999999 3343311
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc-cccc--cCcceEEeeccCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 206 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~-~~~r--~~gsyIyQEFi~~ 206 (716)
.+.++.... ++.|+|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||++..
T Consensus 140 ~e~~~~~~~----ig~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIADE----IGYPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHhh----cCCCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 123333333 3499999999986 332443 33221 1111000 0111 2235677888765
Q ss_pred CCc--eeEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHH----HHHHHHHhcCc-eeeEeEEee
Q 005046 207 GGT--DVKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQM----AREVCIAFRQA-VCGFDLLRC 277 (716)
Q Consensus 207 ~G~--DIKvytVG~~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~i----A~ka~kafgq~-VcGfDLLRs 277 (716)
..+ =..+..--.+ ++-.|.+-=| .|.-.++.--. +-.-.||+.|-++ |.++.+++|.. =|-|+.-=+
T Consensus 200 ~ke~e~ev~rd~~~n~ivvc~men~dp--~gvhtgdsi~v--apaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~ 275 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVVCNMENLDP--MGVHTGDSITV--APAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVD 275 (400)
T ss_pred ceEEEEEEEEeCCCCEEEEEeCCcccc--ccccccceeee--ccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEc
Confidence 211 1111111111 2223444333 33322211111 1123466665554 45777888765 244665544
Q ss_pred C--CCcEEEecc-Ccccc
Q 005046 278 E--GRSYVCDVN-GWSFV 292 (716)
Q Consensus 278 ~--g~syV~DVN-gwSFV 292 (716)
. +..||+||| .+|=.
T Consensus 276 ~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 276 PGGGELYVIEINPRVSRS 293 (400)
T ss_pred CCCceEEEEEecCCcCcc
Confidence 4 347899999 66643
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=63.93 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=76.9
Q ss_pred HHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhhCCC
Q 005046 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (716)
Q Consensus 104 L~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~ 181 (716)
|+++|||+|++..+... +|.-. ....++.|+|.|+..| - .++.++-.+.+ -..+.++.+
T Consensus 1 l~~~gip~~~~~~i~~~------------~~l~~-a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL------------EDLEE-AAESIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH------------HHHHH-HHHHHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCH------------HHHHH-HHHHcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 78999999999999833 12211 2234569999997665 3 22233333221 122233322
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHH
Q 005046 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (716)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~i 257 (716)
..+.+|.|+|++- ...|=|.++-. ..-+.+-=|++. .+.+|-.-...-.|..+++ +-++|
T Consensus 62 ------------~~~~~ilE~~v~f-~~EiSvivaR~--~~G~~~~yp~~e-n~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPF-DREISVIVARD--QDGEIRFYPPVE-NVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---E-SEEEEEEEEEE--TTSEEEEEEEEE-EEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCC-cEEEEEEEEEc--CCCCEEEEcCce-EEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999984 33343333311 011111111110 1112222233455677775 45678
Q ss_pred HHHHHHHhcC-ceeeEeEEeeCCC--cEEEecc
Q 005046 258 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDVN 287 (716)
Q Consensus 258 A~ka~kafgq-~VcGfDLLRs~g~--syV~DVN 287 (716)
|.+|+.+++. .|-+|.+.-+++| -||-|+-
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 8888888864 5778899888655 4788874
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0036 Score=68.50 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=131.8
Q ss_pred HHHHhcCCcccCCchhhhHhhhHHHHHHHHHh----CC---CCC-CcEEEEecCCCccccccccCccceeeecCeeecCc
Q 005046 75 SYATLRKPFLVNELEPQHLLHDRRKVYEQLEK----YG---IPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (716)
Q Consensus 75 ~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~----~g---IP~-P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kP 146 (716)
.-+..-+.+.||++.+.+-+-||--+..-|.+ -| +|+ |.|.+-+ ....+..- .+|
T Consensus 179 ig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn-------------HK~m~s~~----tyP 241 (488)
T KOG3895|consen 179 IGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN-------------HKEMLSQP----TYP 241 (488)
T ss_pred HHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-------------chhhccCC----CCc
Confidence 33445678899999999999999544444443 23 332 2222222 22333322 389
Q ss_pred EEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEe
Q 005046 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 225 (716)
Q Consensus 147 fVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~ 225 (716)
+|+|-=.|- +|.|-. |+.|....-|-+. .+. .+.-.-.|-||.. --|||+=-||.+|-+=|+
T Consensus 242 vVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDa-KYDiriQKIG~nYKaymR 304 (488)
T KOG3895|consen 242 VVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMR 304 (488)
T ss_pred EEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccccccc-cceeehhhhhhhHHHHhh
Confidence 999997776 777744 3433332222110 111 2222346778776 479999999999877665
Q ss_pred ecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhc-CceeeEeEEeeC-CCcEEEeccCccccccchhhH----
Q 005046 226 RKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYY---- 299 (716)
Q Consensus 226 RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafg-q~VcGfDLLRs~-g~syV~DVNgwSFVK~n~kYY---- 299 (716)
| | +.|.|.+|+ |-..-+.|-.++..|...--++..|| +.||.||+|-++ |+-||+|||+-| .-|+
T Consensus 305 t-s--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ 375 (488)
T KOG3895|consen 305 T-S--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQ 375 (488)
T ss_pred h-h--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccch
Confidence 5 5 599999997 55666778888888988888888886 799999999998 569999999843 3333
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 005046 300 DDAACVLRKMFLEAKAPHL 318 (716)
Q Consensus 300 ddcA~IL~~~~l~~~~~~~ 318 (716)
++=.+.+..++....++.+
T Consensus 376 eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 376 EEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hHHHHHHHHHHHHHhhhcc
Confidence 2333455566666665544
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=66.55 Aligned_cols=165 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 172 (716)
||..+=++++++||||+.+...... .+...+|+-.+ .|. |+|+--- .-.++.|.-.... --...
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~---------~~A~~~l~~~~----~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDY---------EEALEYLEEQG----YPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSH---------HHHHHHHHHHS----SSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCH---------HHHHHHHHhcC----CCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 5777889999999999987777622 13445554333 777 9998542 2244444432221 11122
Q ss_pred HHHhhhCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEE-----eecCCCCCCceeecCCCCceee
Q 005046 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (716)
Q Consensus 173 rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe-----~RKSPv~DG~vrrN~~gke~r~ 246 (716)
++|.. . .+. .+...|+|||+.-.---+=++|=|..++.-- .|-- ||+-=-|+-|=|.-.
T Consensus 69 ~~~~~-----~-------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD-----R-------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS-----S-------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc-----c-------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22220 0 111 3567899999975555666777787765422 2444 898888998877777
Q ss_pred eeeC-CHHHH-----HHHHHHHHHh---cCceee---EeEEeeCCCcEEEeccC
Q 005046 247 PVLL-TPNEK-----QMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 247 pv~L-t~eEk-----~iA~ka~kaf---gq~VcG---fDLLRs~g~syV~DVNg 288 (716)
|+.. |+++. .|...+.+++ |...+| +.++-+.+||+|+|-|-
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN~ 187 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFNV 187 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEES
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEeC
Confidence 7765 55442 3344455554 455555 57778899999999983
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=62.92 Aligned_cols=182 Identities=20% Similarity=0.265 Sum_probs=119.2
Q ss_pred HHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 73 AESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 73 ai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
++--++..+-.+|-...+-.+..||-..-++. ++.|+||-++-|++.. +++.. .-+.++.|.|+||
T Consensus 90 ~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~------------~e~~~-a~~~iGfPcvvKP 156 (394)
T COG0027 90 ALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL------------EELRA-AVEKIGFPCVVKP 156 (394)
T ss_pred HHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH------------HHHHH-HHHHcCCCeeccc
Confidence 44446677777888888888888885443333 3579999999998722 22222 2234569999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEeeccCCC--CceeEEEEECCc--eeEEEee
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTG--GTDVKVYTVGPE--YAHAEAR 226 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQEFi~~~--G~DIKvytVG~~--~vhAe~R 226 (716)
+-++ .|-|-- +.++..+-.+.++-...--| ..+..|+|+||+-+ =|=+-|=.+++. ||+-.--
T Consensus 157 vMSS-----------SGkGqs-vv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGH 224 (394)
T COG0027 157 VMSS-----------SGKGQS-VVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGH 224 (394)
T ss_pred cccc-----------CCCCce-eecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCccc
Confidence 9987 777753 66666544444442221224 56779999999863 233333334443 5543222
Q ss_pred cCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhc-CceeeEeEEeeCCCcEEEecc
Q 005046 227 KSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 227 KSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafg-q~VcGfDLLRs~g~syV~DVN 287 (716)
+-+ ||+. -|.-+|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 225 rq~--dgdY------~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 225 RQE--DGDY------RESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred ccC--CCCh------hcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 221 5554 577789999974 4678888888986 579999998888888877774
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.041 Score=60.93 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
.+++++... ..+-=..++..+++||+.==+.|+++|||+|.+..+.+. +|... -...|+.|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~~~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AAADLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HHHHcCCceEEEe
Confidence 466666666 334446788999999999999999999999999999843 12221 2234569999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~ 231 (716)
--|- ..|-|.. .++......+... ..-..+..|.|+|++=+. -|-|.++ | ++
T Consensus 142 r~gG----------YDGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~~-EiSvi~a---------R-~~-- 193 (375)
T COG0026 142 RRGG----------YDGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFER-EISVIVA---------R-SN-- 193 (375)
T ss_pred cccc----------ccCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccce-EEEEEEE---------E-cC--
Confidence 9873 1355543 3332221111111 111234449999998632 3344333 2 21
Q ss_pred CCcee-----ecCCCCceee----eeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEeccCccccccch
Q 005046 232 DGVVM-----RNPDGKEVRY----PVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVNGWSFVKNSY 296 (716)
Q Consensus 232 DG~vr-----rN~~gke~r~----pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~-syV~DVNgwSFVK~n~ 296 (716)
+|.+. -|.|..++-. |..+++ +-++||.+++.+++. .|-||.+.-+.+| -+|-|.- +=|-||-
T Consensus 194 ~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--PRvHNSG 271 (375)
T COG0026 194 DGEVAFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--PRVHNSG 271 (375)
T ss_pred CCCEEEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--CCCCCcc
Confidence 55443 3666555432 323454 566788888888875 5778888888875 4454442 4455555
Q ss_pred hhHHHHHH
Q 005046 297 KYYDDAAC 304 (716)
Q Consensus 297 kYYddcA~ 304 (716)
+|=-+.+.
T Consensus 272 H~T~~gc~ 279 (375)
T COG0026 272 HWTIDGCE 279 (375)
T ss_pred ccchhhcc
Confidence 55544443
|
|
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.45 Score=49.64 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=102.5
Q ss_pred hhhhHhhhHHHHHHHHHhCC--CCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccC
Q 005046 89 EPQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (716)
Q Consensus 89 ~~q~~l~DR~~~lqiL~~~g--IP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~ 166 (716)
+-...+-||..|-..+++.+ ..+|+++-+..+. +. ++=..+..+||+||..|+. .+.|+.-++
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~------------~~--i~~~~Lp~~fViK~nhgsg-~~~i~~dk~ 77 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDNP------------DD--IDFDSLPDKFVIKPNHGSG-SNIIVRDKS 77 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCCh------------hh--hhhhcCCCCEEEEEecCCC-cEEEEeCCc
Confidence 34457889999999999886 4455555544221 11 2333456899999999974 445555544
Q ss_pred CCC--hHHHHHhh-hCCCcccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeecCC-----CC
Q 005046 167 AGG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSP-----VV 231 (716)
Q Consensus 167 ~Gg--G~~rLfrk-ign~sS~~~p~~~~~r-~~gsyIyQEFi~~-~G---~DIKvytVG~~--~vhAe~RKSP-----v~ 231 (716)
..- -+++.+++ ....-.....+- ..+ -.--.|.|||+.. .| .|.|+|+.+++ ++.......+ ..
T Consensus 78 ~~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~y 156 (239)
T PF14305_consen 78 KLDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFY 156 (239)
T ss_pred ccCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEE
Confidence 321 11112222 111111111111 222 3445899999998 55 79999999995 5555444221 01
Q ss_pred CCceeecC------CCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecc
Q 005046 232 DGVVMRNP------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 232 DG~vrrN~------~gke~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVN 287 (716)
|.+|.+=. .+.....|-.| ++..++|.++|+-|. .|=||+..++++.|.-|.=
T Consensus 157 d~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 157 DRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred CcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 11111100 12222222222 355667888887765 6889999999999999874
|
|
| >KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.073 Score=59.58 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=44.6
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccCC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~lege 548 (716)
|+||.. +||+.+|+.-|+ | + ++| -..| +.++.|+|||=-|+.+||++..+||+.-++.
T Consensus 69 GqLT~~G~~Q~~~LG~~LR~rYvr-------~---~-~fL--~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 69 GQLTDRGMEQMFELGRFLRKRYVR-------Y---G-NFL--SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhh-------c---c-ccC--CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 789987 999999992211 0 1 122 2222 6799999999999999999999999999754
|
|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.44 Score=53.79 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=112.5
Q ss_pred HHHHHHhcCCcccCCchh-hhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEee
Q 005046 73 AESYATLRKPFLVNELEP-QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (716)
Q Consensus 73 ai~y~~lr~p~~iNdl~~-q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (716)
+...++.+|..+.--... -.+=+||..+=++++++|||++.+-..+.. .+..++|.--| .|+|+||
T Consensus 79 vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~---------e~a~ayi~~~g----~piVVKa 145 (428)
T COG0151 79 VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDP---------EEAKAYIDEKG----APIVVKA 145 (428)
T ss_pred hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCH---------HHHHHHHHHcC----CCEEEec
Confidence 556666666666554433 335578888999999999999988776621 13456665333 9999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhhCCCcccccccc--cccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--
Q 005046 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A-- 223 (716)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~--~~~r-~~gsyIyQEFi~~~G~DIKvytVG~~~vh---A-- 223 (716)
.-=. .|-|+. .......+....+.-+ ..+. .....++|||+.-.---+=|+|=|..++- |
T Consensus 146 dGLa-----------aGKGV~-V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQD 213 (428)
T COG0151 146 DGLA-----------AGKGVI-VAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQD 213 (428)
T ss_pred cccc-----------CCCCeE-EcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccc
Confidence 4323 455664 3332221111111000 0111 12468999999865566777777766532 1
Q ss_pred EeecCCCCCCceeecCCCCceeeeee-CCHHHHH-----HHHHHHHHhcC---ceeeE---eEEeeCCCcEEEeccC
Q 005046 224 EARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-----MAREVCIAFRQ---AVCGF---DLLRCEGRSYVCDVNG 288 (716)
Q Consensus 224 e~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~-----iA~ka~kafgq---~VcGf---DLLRs~g~syV~DVNg 288 (716)
-.| +.||+-=-|+-|=|.=.|.. +|++.-+ |-..+.+++.. ..+|| =|+-+.+||+|+|-|-
T Consensus 214 hKr---a~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~ 287 (428)
T COG0151 214 HKR---AYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNA 287 (428)
T ss_pred ccc---ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEec
Confidence 123 24888888888877655554 4555333 33445555544 47776 3455678899999995
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.65 Score=50.75 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHH
Q 005046 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 95 ~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (716)
-.|=.-|.+-.+.|+|.|+|+.++.. .| ..+-.+..|+|.||=.|- |+-+.
T Consensus 113 ceKPllY~ra~elgl~~P~Ty~v~S~------------~d---~~~~el~FPvILKP~mgg--------------~~~~~ 163 (415)
T COG3919 113 CEKPLLYNRAEELGLPYPKTYLVNSE------------ID---TLVDELTFPVILKPGMGG--------------SVHFE 163 (415)
T ss_pred hhCcHHHHHHHHhCCCCcceEEecch------------hh---hhhhheeeeEEecCCCCC--------------cceee
Confidence 34446688888999999999999932 11 123345689999996552 22222
Q ss_pred HhhhCC-Ccccccccccccc-----cCcceEEeeccCCCCceeEEEEE----CCce---eEEEeecCCCCCCceeecCCC
Q 005046 175 FRKVGN-RSSEFHPDVRRVR-----REGSYIYEEFMPTGGTDVKVYTV----GPEY---AHAEARKSPVVDGVVMRNPDG 241 (716)
Q Consensus 175 frkign-~sS~~~p~~~~~r-----~~gsyIyQEFi~~~G~DIKvytV----G~~~---vhAe~RKSPv~DG~vrrN~~g 241 (716)
.|+..- +++.-+-.+-.+| --.+.|+||||+-+|+.-++|.- |-.+ .+--+|+=||--
T Consensus 164 araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdf--------- 234 (415)
T COG3919 164 ARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDF--------- 234 (415)
T ss_pred hhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCccc---------
Confidence 222110 0111000000111 12357999999999998888642 3332 233356666332
Q ss_pred CceeeeeeCCH--HHHHHHHHHHHHhc-CceeeEeEEeeC-CCcE-EEecc
Q 005046 242 KEVRYPVLLTP--NEKQMAREVCIAFR-QAVCGFDLLRCE-GRSY-VCDVN 287 (716)
Q Consensus 242 ke~r~pv~Lt~--eEk~iA~ka~kafg-q~VcGfDLLRs~-g~sy-V~DVN 287 (716)
|=..+.|++-+ +--+-|+++-+..+ -..+-||+=+.. +||| ++|||
T Consensus 235 gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 235 GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 22345566655 23334555554444 346678888874 7899 99999
|
|
| >PRK10172 phosphoanhydride phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.2 Score=56.85 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=44.4
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.. +||+.+|+.. . ..|||--+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 70 ~GqLT~~G~~~~~~lG~~lR~rY-----------~-~~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 70 LGWLTPRGGELVTLLGHYQRQRL-----------V-ADGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-----------H-hcCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 3899987 9999999944 1 23565221112 457899998888999999999999998766
|
|
| >cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.34 Score=44.45 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=34.6
Q ss_pred ccCccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhh
Q 005046 475 LVSGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (716)
Q Consensus 475 KWGGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L 543 (716)
.+++.||.. .+|+.|+. . | ..-..||||+-.||+.||++|+.++.
T Consensus 21 ~~d~~Lt~~G~~qa~~l~~~l~~-~---------~--------------~~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 21 WGDGPLTEKGRQQARELGKALRE-R---------Y--------------IKFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHH-h---------C--------------CCCCEEEECChHHHHHHHHHHHHHhc
Confidence 356677766 77777776 3 2 23346999999999999999999985
|
Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi |
| >KOG3672 consensus Histidine acid phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.17 Score=56.49 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=48.8
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccCCCCc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~legeLtP 551 (716)
|+||.. .+|..||+ . |----..++ =|.---.|+-++|+--+|.-.||-||-=+||--. ...|
T Consensus 167 G~LT~~G~~QhL~~G~~~r~-~---------Y~k~~lk~~-pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~ 234 (487)
T KOG3672|consen 167 GMLTAEGALQHLRLGKYFRH-R---------YEKTKLKAD-PNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAP 234 (487)
T ss_pred cceeHHhHHHHHhhhHHHHH-H---------HhhccccCC-ccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhe
Confidence 777765 99999999 5 522111111 1333445788999999999999999988888764 4667
Q ss_pred ceeeeEecCCcccC
Q 005046 552 ILVSLVSKDSSMLD 565 (716)
Q Consensus 552 ilv~~V~kd~~~ld 565 (716)
| .||-...|+-
T Consensus 235 i---~iR~s~s~~f 245 (487)
T KOG3672|consen 235 I---QIRASNSSYF 245 (487)
T ss_pred e---eeecCcccce
Confidence 6 4555444443
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.8 Score=40.16 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=53.0
Q ss_pred cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHH--HhcCce
Q 005046 192 VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAV 269 (716)
Q Consensus 192 ~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~k--afgq~V 269 (716)
...+..++..|-+. -..--|+|++.++++.+- += .|.. .....++...-|.++.+ .-.-..
T Consensus 32 ~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s-~Y----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~ 94 (130)
T PF14243_consen 32 LDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGS-PY----RGDW-----------DLEPDPDVVAFAIQALAAAWTLPPA 94 (130)
T ss_pred CCCCceEEEeceEe-eeeeEEEEEECCEEEEEe-ec----CCCc-----------ccCCCHHHHHHHHHHHHhcccCCCe
Confidence 33566677777776 367789999999866543 22 1111 11124444445555554 455788
Q ss_pred eeEeEEee-CCCcEEEecc-Ccc
Q 005046 270 CGFDLLRC-EGRSYVCDVN-GWS 290 (716)
Q Consensus 270 cGfDLLRs-~g~syV~DVN-gwS 290 (716)
|.+|+=++ .|+.+|+|+| ||+
T Consensus 95 ~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 95 YVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEEeCCCCEEEEEecCccc
Confidence 99999999 5789999999 553
|
|
| >KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.4 Score=54.61 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=28.8
Q ss_pred ceEeecCchhHHHHHHHHHHhhhcccCCCCcceeeeE
Q 005046 521 LKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLV 557 (716)
Q Consensus 521 lkIysSdEgRVq~tAaafakg~L~legeLtPilv~~V 557 (716)
.-|++|.--||..||++||-||.+-.+..-| ++.++
T Consensus 161 y~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t-~~~~~ 196 (467)
T KOG1382|consen 161 YNINTTASQRVVDSAQAFAYGLFGEDHFNIT-LQTVS 196 (467)
T ss_pred EEeeccchHHHHHHHHHHHhhhccccccCCC-ceeee
Confidence 3589999999999999999999987776666 44333
|
|
| >PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.62 Score=52.48 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=44.2
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccc-ccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst-~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.- .+|+.+|+ . | ...|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 68 ~G~LT~~G~~~~~~~G~~~r~-~---------~--~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 68 GGQLTTKGGVLEVYMGHYMRE-W---------L--AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred cccccHHHHHHHHHHHHHHHH-H---------H--HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 3899986 89999999 4 3 23356521100 1247999999999999999999999998765
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.90 E-value=1 Score=54.52 Aligned_cols=178 Identities=22% Similarity=0.282 Sum_probs=117.5
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|+==..+....+-||-++-.+-.++|||+=. ..+++++. .++..+ -++..++|+++|-.-|-
T Consensus 108 FIGP~~e~ld~~GdKv~Ar~~A~~agvPvip----gt~~~~~~------~ee~~~-fa~~~gyPvmiKA~~GG------- 169 (1149)
T COG1038 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPVIP----GTDGPIET------IEEALE-FAEEYGYPVMIKAAAGG------- 169 (1149)
T ss_pred EeCCCHHHHHHhccHHHHHHHHHHcCCCccC----CCCCCccc------HHHHHH-HHHhcCCcEEEEEccCC-------
Confidence 4445678899999999988888899999522 22332221 122222 22345599999998874
Q ss_pred eccCCCChHHHHHhhhC-------CCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCC
Q 005046 163 YPSSAGGGMKELFRKVG-------NRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVD 232 (716)
Q Consensus 163 yp~~~GgG~~rLfrkig-------n~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~D 232 (716)
||-++|..|+.. .++|+=.. .+ -++...+|.|+.. ..-|-|=+.|+ +++|--.|-+-|
T Consensus 170 -----GGRGMR~vr~~~~l~~~~~~AksEAka---AF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv-- 237 (1149)
T COG1038 170 -----GGRGMRVVRSEADLAEAFERAKSEAKA---AF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV-- 237 (1149)
T ss_pred -----CccceeeecCHHHHHHHHHHHHHHHHH---hc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch--
Confidence 443344544332 12222111 12 3455566888876 56677777774 689999998753
Q ss_pred CceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEeeC-CCcEEEeccCcccc
Q 005046 233 GVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GRSYVCDVNGWSFV 292 (716)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~VcG-fDLLRs~-g~syV~DVNgwSFV 292 (716)
=|||-.==|++-.+-|+++-+ +-|+|+|+..|-.=+| |..|-.+ +.-|.+|||----|
T Consensus 238 --QRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 238 --QRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred --hhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 366666668888888999766 4689999999977777 6667766 47999999975554
|
|
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=0.24 Score=54.56 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeee-cCcEEEeec
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 152 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~-~kPfVeKpv 152 (716)
-..+.++|+++|||+|++.++... ++....- ..+ +.|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~~------------~ea~~~a-~~i~g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATTP------------EEAVEAA-EELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCCH------------HHHHHHH-HHcCCCcEEEEEe
Confidence 346678999999999999988732 2233211 113 599999996
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.66 E-value=1.1 Score=51.80 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=110.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|.==+..++.-+-||..+-+|..++|||+=+- .++..+ +++.... ....|++|+.+|++-|-
T Consensus 98 FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g~~q------s~e~~~~-~a~eIgyPvMiKa~~GG------- 159 (670)
T KOG0238|consen 98 FIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHGEDQ------SDEEAKK-VAREIGYPVMIKATAGG------- 159 (670)
T ss_pred EECCCHHHHHHhcchHHHHHHHHhcCCccccC----cccccc------cHHHHHH-HHHhcCCcEEEEeccCC-------
Confidence 33345688999999999999999999995322 121101 1222223 33467799999999885
Q ss_pred eccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCcee
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVM 236 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vr 236 (716)
||-++|++..-+.-.-.|...-. ..=-+...++|.||.. -+-|-|=|.|+ +++|--.|-+-+ =|
T Consensus 160 -----GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCSv----QR 229 (670)
T KOG0238|consen 160 -----GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCSV----QR 229 (670)
T ss_pred -----CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccch----hh
Confidence 33233454432211111110000 0013455688999988 55666666665 566767776642 35
Q ss_pred ecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEE-eeCCCcEEEeccCcccc
Q 005046 237 RNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLL-RCEGRSYVCDVNGWSFV 292 (716)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk----~iA~ka~kafgq~VcG-fDLL-Rs~g~syV~DVNgwSFV 292 (716)
||-.==|.+-.-.|+++-+ +-|+++|+|.|-.=+| |..| .+++..|.+|+|--=-|
T Consensus 230 RnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 230 RNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred hhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 6655445554555666543 6789999999987776 4444 45677889999976555
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.04 E-value=1.4 Score=52.36 Aligned_cols=180 Identities=20% Similarity=0.230 Sum_probs=113.1
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
-+.+-..-+-||-.+-++--++|||+=. ..|+ | +....|..++..-- +.|+|+|..-|-
T Consensus 137 PspeVi~~mGDKv~AR~~Ai~agVpvVP----GTpg-P--itt~~EA~eF~k~y----G~PvI~KAAyGG---------- 195 (1176)
T KOG0369|consen 137 PSPEVIDSMGDKVAARAIAIEAGVPVVP----GTPG-P--ITTVEEALEFVKEY----GLPVIIKAAYGG---------- 195 (1176)
T ss_pred CCHHHHHHhhhHHHHHHHHHHcCCCccC----CCCC-C--cccHHHHHHHHHhc----CCcEEEeecccC----------
Confidence 3456677888998888889999999522 1232 1 11222333344323 399999998885
Q ss_pred CCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecC
Q 005046 166 SAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNP 239 (716)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~ 239 (716)
||-++|..|+...-.-.|.-..+ +-=-||+..+|.|++. -.-|-|=..|+ +++|--.|-+-|. ||--
T Consensus 196 --GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQ----RRHQ 268 (1176)
T KOG0369|consen 196 --GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQ----RRHQ 268 (1176)
T ss_pred --CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchh----hhhc
Confidence 44344566654322222221101 1116899999999987 45667777774 6799999977533 2222
Q ss_pred CCCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee-CCCcEEEeccCccccc
Q 005046 240 DGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (716)
Q Consensus 240 ~gke~r~pv~Lt~eEk~----iA~ka~kafgq~VcG-fDLLRs-~g~syV~DVNgwSFVK 293 (716)
.==|++-.-.|.++-++ -|+|+|+..|-.=+| +..|-. +|+-|.+|||.-=-|-
T Consensus 269 KVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVE 328 (1176)
T KOG0369|consen 269 KVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVE 328 (1176)
T ss_pred ceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeee
Confidence 22355555566666553 479999999988777 556655 4779999999866553
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=81.49 E-value=0.74 Score=48.33 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=28.1
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEECC
Q 005046 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVGP 218 (716)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~----~G--~DIKvytVG~ 218 (716)
-+|.||..|. +|-|.. |++... .+.. ......+.||+|+||+. +| -|||+||+=.
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 4888998887 777764 665442 1110 01236899999999985 56 8999998733
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 716 | ||||
| 3t7a_A | 330 | Crystal Structure Of The Catalytic Domain Of Human | 1e-107 | ||
| 3t54_A | 334 | Crystal Structure Of The Catalytic Domain Of Human | 1e-107 |
| >pdb|3T7A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2) In Complex With Adp At Ph 5.2 Length = 330 | Back alignment and structure |
|
| >pdb|3T54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2) In Complex With Atp And Cadmium Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 716 | |||
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 1e-180 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 5e-30 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 6e-24 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 |
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A* Length = 330 | Back alignment and structure |
|---|
Score = 516 bits (1330), Expect = e-180
Identities = 185/328 (56%), Positives = 243/328 (74%), Gaps = 3/328 (0%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+F+
Sbjct: 6 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 65
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 66 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 125
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 126 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 185
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 186 YSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 244
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 245 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 304
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE 332
+L + + AP IP +P + +
Sbjct: 305 ILGNIVMRELAPQFH--IPWSIPLEAED 330
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 5e-30
Identities = 47/354 (13%), Positives = 94/354 (26%), Gaps = 86/354 (24%)
Query: 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCL 60
M + +++ + + E K + + V L + +
Sbjct: 6 MTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIF-----DVTLSTELPDKEPNAII 60
Query: 61 IAF-YSSGYPLEKAESYATLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 118
+ G ++ Y L E ++ R ++ L K IP+P V
Sbjct: 61 TKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVK 120
Query: 119 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD----DHSIMIYYPSSAGGGMKEL 174
+ E ++ PF+ KP + H + I G+ ++
Sbjct: 121 SKE---------EVIQLLQSKQLIL--PFIVKPENAQGTFNAHQMKIVLEQE---GIDDI 166
Query: 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGV 234
+ + ++ VKV+ +G P V
Sbjct: 167 --------------------HFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRC 206
Query: 235 VMRNPD-----------------------------------GKEVRYPVLLTPNEKQMAR 259
+++ D + + + +A
Sbjct: 207 GIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAY 266
Query: 260 EVCIAFRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFL 311
+V A +CG D ++ G V DVN + SY D + K+ L
Sbjct: 267 KVRCALGVQLCGIDFIKENEQGNPLVVDVNVFP----SYGGKVDFDWFVEKVAL 316
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 48/344 (13%), Positives = 99/344 (28%), Gaps = 67/344 (19%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFG-EFEVIHFGD--------KVILEDPIEKWP 55
K +G + EKK+ + + G E ++ VI+ +
Sbjct: 17 KGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVIL 76
Query: 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRY 114
D S + + + Y +V + L L DR K YE + K +
Sbjct: 77 EAD--QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 134
Query: 115 ALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD---HSIMIYYPSSAGGGM 171
+ + P+ EL ++ + N PF+ K H + I + G+
Sbjct: 135 RICSP--PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQE---GL 189
Query: 172 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231
+ + + + F+ KV+ VG Y +
Sbjct: 190 NAI--------------------QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNF 229
Query: 232 DGVVMRN-------------------PDGKEVRYPVLLTPNE--KQMAREVCIAFRQAVC 270
+ ++ +E ++++R + A ++
Sbjct: 230 SAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLF 289
Query: 271 GFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 312
G D++ G+ V D+N + Y+ + L
Sbjct: 290 GIDIIINNQTGQHAVIDINAFP----GYEGVSEFFTDLLNHIAT 329
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 38/270 (14%)
Query: 25 QILDRLQAFG-EFEVIHFGD-KVILEDPIEKWPICDCLI----AFYSSGYPLEKAESYAT 78
+ +R +A G ++ ++ ++L + ++ + + +
Sbjct: 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALGI 74
Query: 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEV 138
+VN E D+ L K G+P P+ AL E +E
Sbjct: 75 ----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDRE---------EALRLMEA 121
Query: 139 HGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY 198
G P V KPV G S G + +V + +
Sbjct: 122 FG----YPVVLKPVIG-----------SWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLF 166
Query: 199 IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 258
+E++ G D++V+ VG A R+S R G+ P LT +++
Sbjct: 167 YIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTARG--GQAENCP--LTEEVARLS 222
Query: 259 REVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288
+ A V DL E V +VN
Sbjct: 223 VKAAEAVGGGVVAVDLFESERGLLVNEVNH 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 77/490 (15%), Positives = 160/490 (32%), Gaps = 126/490 (25%)
Query: 291 FVKNSYKY-YDDAACVLRKMF---LEAKAPHLSSAIPPILPWK-----VNEPVQPTEG-- 339
F ++Y Y D V F + K + IL + + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 340 ------LTRQGSGLGTFGQSEELRC----VIAVMRHGDRTPKQKVKLKVTE-EKLLN--- 385
L++Q + F E LR +++ ++ R P ++ + + ++L N
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 386 LMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEH----SKKRI 441
+ KYN R + KL+ A L +L A +L+ S K
Sbjct: 125 VFAKYNVSRLQPYLKLRQA--LLELRPAKNVLI-----------------DGVLGSGKTW 165
Query: 442 ICVAILHLGGQFEKFFNVQDVLLSI-QCH---LLLANLVSGQFIDFLIEQFYQDNGVNEI 497
+ + + L + + + + L++ C+ +L L Q + + I+ + +
Sbjct: 166 VALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSS 221
Query: 498 AYWWGSHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMS--AAAFAKGLLDLEGQLTPIL 553
HS L RL Y + L + VQ + AF +L + IL
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL--LN--VQNAKAWNAF-----NLSCK---IL 269
Query: 554 VSLVSKDSSMLDGLDNAS---IEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVG-L 609
+ ++ + D L A+ I ++ L K + ++ L
Sbjct: 270 L--TTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLK------YLDCRPQDL 318
Query: 610 PPNASELLPKLVKLTKKVT-------EQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGK 662
P P+ + + + + + + D+ + E++ +V+ P + K +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDR 377
Query: 663 TNI---DVDRIAAGLPCGSEGFLLMYARWRKLERD-------------LYNERKERFDIT 706
++ +P L + W + + L ++ + I+
Sbjct: 378 LSVFPPSAH-----IP---TILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 707 QIPDVYDSCK 716
IP +Y K
Sbjct: 428 -IPSIYLELK 436
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 716 | |||
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 100.0 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.97 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.97 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.96 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.95 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.87 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.87 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.79 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.78 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.76 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 99.75 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 99.72 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 99.66 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 99.59 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 99.58 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 99.57 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 99.56 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 99.56 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 99.54 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.51 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 99.47 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 99.47 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 99.47 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 99.43 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.43 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 99.43 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.42 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 99.41 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 99.4 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 99.4 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 99.4 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.39 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 99.38 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 99.38 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 99.36 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 99.34 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 99.32 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 99.32 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.31 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 99.3 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 99.29 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 99.28 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 99.27 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.25 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 99.24 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 99.24 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 99.24 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.23 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 99.23 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.22 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 99.21 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 99.2 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 99.16 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 99.14 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 99.13 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 99.08 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 99.03 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 99.02 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 99.01 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 99.01 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 98.99 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 98.97 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 98.93 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 98.93 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 98.92 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 98.53 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 98.12 | |
| 1nd6_A | 354 | Prostatic acid phosphatase; PAP, prostate, phospha | 98.09 | |
| 1dkq_A | 410 | Phytase; histidine acid phosphatase fold, hydrolas | 97.97 | |
| 2wnh_A | 418 | 3-phytase; histidine acid phosphatase, hydrolase; | 97.68 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 97.59 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 97.37 | |
| 2gfi_A | 458 | Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces | 95.75 | |
| 3it3_A | 342 | Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A | 95.74 | |
| 1qfx_A | 460 | Protein (PH 2.5 acid phosphatase); phosphomonoeste | 95.34 | |
| 1qwo_A | 442 | Phytase; alpha barrel, beta sandwich, orthogonal b | 95.32 | |
| 2io8_A | 619 | Bifunctional glutathionylspermidine synthetase/ami | 95.08 | |
| 3k4q_A | 444 | 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hex | 94.67 | |
| 3ntl_A | 398 | Acid glucose-1-phosphate phosphatase; histidine ac | 94.47 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 92.06 | |
| 3it3_A | 342 | Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A | 90.46 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 90.46 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 87.06 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 84.35 | |
| 3ntl_A | 398 | Acid glucose-1-phosphate phosphatase; histidine ac | 83.23 |
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-124 Score=977.06 Aligned_cols=321 Identities=57% Similarity=1.058 Sum_probs=311.5
Q ss_pred CCCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCC
Q 005046 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKP 82 (716)
Q Consensus 3 ~~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p 82 (716)
..++|+|||||||+||+|||||+||+||.++++||||||+|+||||+|||+||.|||||||||+||||+|||+|+++|+|
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p 83 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP 83 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCC
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHhCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
|+|||+.+|.++|||+++|++|+++|||||+|++++|+++++....+++.+|+|+++|+++++|||+||++|||||||||
T Consensus 84 ~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iy 163 (330)
T 3t7a_A 84 FVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIY 163 (330)
T ss_dssp EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEE
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccccccCcceee
Confidence 99999999999999999999999999999999999999877666789999999999999999999999999999999999
Q ss_pred eccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCC
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gk 242 (716)
||++|||||+|||||++|+||+|+|++ .+|++++|||||||+++|+||||||||++|||||+|+||++||+||||+|||
T Consensus 164 yp~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG 242 (330)
T 3t7a_A 164 YPTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGK 242 (330)
T ss_dssp CCGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSC
T ss_pred cccccCCchhhhhhhhCCcccccChhh-hhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCCCCCCcEEEcCCCC
Confidence 999999999999999999999999987 6799999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCC
Q 005046 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAI 322 (716)
Q Consensus 243 e~r~pv~Lt~eEk~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~~~~~~~~~~~ 322 (716)
|+|++|+||+||++||+|||+||||+||||||||++++|||||||||||||+|.+|||+||+||+.+|+++++|++
T Consensus 243 ~~~~~v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~~~~~---- 318 (330)
T 3t7a_A 243 EVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQF---- 318 (330)
T ss_dssp BCCEECCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ceeeeecCCHHHHHHHHHHHHHhCCceEEEEEEEECCccEEEEeCCCccccCchhHHHHHHHHHHHHHHHHhCccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCC
Q 005046 323 PPILPWKV 330 (716)
Q Consensus 323 ~~~lp~~~ 330 (716)
++||+.
T Consensus 319 --~~~~~~ 324 (330)
T 3t7a_A 319 --HIPWSI 324 (330)
T ss_dssp --TCCCCC
T ss_pred --CCcccC
Confidence 466654
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=275.02 Aligned_cols=220 Identities=14% Similarity=0.126 Sum_probs=172.1
Q ss_pred CCcCeeeccccCCC-----cHHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCcEEEEecCCC
Q 005046 55 PICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVP 122 (716)
Q Consensus 55 P~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---P~P~t~~~~r~~~ 122 (716)
+..|++|.+-.+.. ....++++++.+|.+++|++.+...++|| ..++++|++.|+ |+|.+.+.. +
T Consensus 67 ~~~D~vi~R~~~~~~~~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~-~-- 143 (309)
T 1i7n_A 67 FRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYP-N-- 143 (309)
T ss_dssp ECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES-S--
T ss_pred ccCCEEEEecccccccccchHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeC-C--
Confidence 46799998887665 22577889999999999999999999999 789999999999 854544442 1
Q ss_pred ccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEe
Q 005046 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYE 201 (716)
Q Consensus 123 ~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQ 201 (716)
..+.++. ++.|+|+||++|+ +|-|+. |++......+..+ .++ .+..++.|
T Consensus 144 ---------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lv~~~~~~~~~~~----~~~~~~~~~~vQ 194 (309)
T 1i7n_A 144 ---------HREMLTL----PTFPVVVKIGHAH-----------SGMGKV-KVENHYDFQDIAS----VVALTQTYATAE 194 (309)
T ss_dssp ---------GGGGSSC----CCSSEEEEESSCS-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEEE
T ss_pred ---------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EECCHHHHHHHHH----HHhccCCeEEEE
Confidence 1223332 3589999999999 999986 6655543333332 333 34566789
Q ss_pred eccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCC
Q 005046 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR 280 (716)
Q Consensus 202 EFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-gq~VcGfDLLRs~g~ 280 (716)
|||+ .|.||||+|||++++ |+.|+|+ .|.|++|.+ ++...++.||++++++|.+++++| |+.+||||||++++|
T Consensus 195 efI~-~g~DiRv~VvGg~v~-a~~Rr~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~g 269 (309)
T 1i7n_A 195 PFID-AKYDIRVQKIGNNYK-AYMRTSI--SGNWKTNTG-SAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDG 269 (309)
T ss_dssp ECCC-EEEEEEEEEETTEEE-EEEEESS--CTTTSCSCC-CSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTS
T ss_pred eecC-CCceEEEEEECCEEE-EEEEEcC--CCCCeecCC-cceeeecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Confidence 9999 699999999999987 6777786 899999996 577789999999999999999999 799999999999877
Q ss_pred -cEEEeccC--ccccccchhhHHHHHHHHHHHHHHhh
Q 005046 281 -SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAK 314 (716)
Q Consensus 281 -syV~DVNg--wSFVK~n~kYYddcA~IL~~~~l~~~ 314 (716)
+||||||+ .++.++... +.+.-+...++..+
T Consensus 270 ~~~V~EVN~~~~P~~~~~~~---~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 270 KDYIFEVMDCSMPLIGEHQV---EDRQLITDLVISKM 303 (309)
T ss_dssp CEEEEEEECTTCCCCSSCHH---HHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCccchhh---hhHHHHHHHHHHHH
Confidence 58999999 999986653 44444444444443
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=274.80 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=172.1
Q ss_pred CcCeeeccccCCC-----cHHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCcEEEEecCCCc
Q 005046 56 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 123 (716)
Q Consensus 56 ~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---P~P~t~~~~r~~~~ 123 (716)
..|++|.+-.+.. ....++++++.+|.+++|++.++..++|| ..++++|.+.|+ |+|.+.+.. +
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~-~--- 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFP-N--- 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEES-S---
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecC-c---
Confidence 6799999987743 12477889999999999999999999999 889999999999 854544442 1
Q ss_pred cccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEee
Q 005046 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 202 (716)
Q Consensus 124 ~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQE 202 (716)
..+.+.. ++.|+|+||++|+ +|-|+. |++......+..+ .++ .+..++.||
T Consensus 161 --------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lve~~~~~~~~~~----~~~~~~~~~~vQe 212 (344)
T 2p0a_A 161 --------HKPMVTA----PHFPVVVKLGHAH-----------AGMGKI-KVENQLDFQDITS----VVAMAKTYATTEA 212 (344)
T ss_dssp --------STTCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEEEE
T ss_pred --------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EECCHHHHHHHHH----HHhccCCeEEEEe
Confidence 1233432 3489999999999 999986 6655543333332 222 345567899
Q ss_pred ccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCCc
Q 005046 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGRS 281 (716)
Q Consensus 203 Fi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-gq~VcGfDLLRs~g~s 281 (716)
||+ .|.||||||||++++ |+.|+++ .|.|++|.+ ++...++.||++++++|.+++++| |+.+||||||++++|+
T Consensus 213 fI~-~g~DiRv~VVGg~vv-a~~R~~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~ 287 (344)
T 2p0a_A 213 FID-SKYDIRIQKIGSNYK-AYMRTSI--SGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 287 (344)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-SEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ccC-CCccEEEEEECCEEE-EEEEecC--CCCCeecCC-ceEEEeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 5666676 899999996 577789999999999999999999 7999999999998875
Q ss_pred -EEEeccC--ccccccchhhHHHHHHHHHHHHHHhhCC
Q 005046 282 -YVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKAP 316 (716)
Q Consensus 282 -yV~DVNg--wSFVK~n~kYYddcA~IL~~~~l~~~~~ 316 (716)
||||||+ -++.++.. .+++.-+...+++.+..
T Consensus 288 ~~VlEVN~~~~P~~~~~~---~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 288 DYIIEVMDSSMPLIGEHV---EEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp EEEEEEECTTCCCCGGGH---HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCcccchh---hhHHHHHHHHHHHHHHH
Confidence 8999999 66666444 45565556666665533
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=272.82 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=171.7
Q ss_pred CcCeeeccccCCC-----cHHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCcEEEEecCCCc
Q 005046 56 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 123 (716)
Q Consensus 56 ~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---P~P~t~~~~r~~~~ 123 (716)
..|++|.+-.+.. ....++++++..|.+++|++.++.+++|| ..++++|.+.|+ |+|.+.+.. +
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~-~--- 255 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYP-N--- 255 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES-S---
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecC-c---
Confidence 6799999887655 12578899999999999999999999999 788999999999 844444442 1
Q ss_pred cccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-cCcceEEee
Q 005046 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 202 (716)
Q Consensus 124 ~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyQE 202 (716)
..+.+.. ++.|+|+||+.|+ +|-|+. |++......+..+ .++ .+..|++||
T Consensus 256 --------~~~~i~~----~g~PvVvKp~~GS-----------~G~GV~-lve~~~~l~~ii~----~~~~~~~~~~vQE 307 (422)
T 1pk8_A 256 --------HKEMLSS----TTYPVVVKMGHAH-----------SGMGKV-KVDNQHDFQDIAS----VVALTKTYATAEP 307 (422)
T ss_dssp --------GGGCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTSCEEEEE
T ss_pred --------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EeCCHHHHHHHHH----HHhccCceEEEEe
Confidence 1233332 3589999999999 999986 6655543333333 333 345567899
Q ss_pred ccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCC-
Q 005046 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 280 (716)
Q Consensus 203 Fi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-gq~VcGfDLLRs~g~- 280 (716)
||+ .|.||||+|||++++ |+.|+++ .|.|++|++ ++...++.||++++++|.+++++| |+.|||||||++++|
T Consensus 308 fI~-~g~DIRv~VVGg~vv-a~~Rr~~--~g~WrtNvg-~g~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~dG~ 382 (422)
T 1pk8_A 308 FID-AKYDVRVQKIGQNYK-AYMRTSV--SGNWKTNTG-SAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGR 382 (422)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-CEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ecC-CCceEEEEEECCEEE-EEEEEcC--CCCceeccC-ceeeeeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 6666675 899999996 577789999999999999999999 899999999999977
Q ss_pred cEEEeccC--ccccccchhhHHHHHHHHHHHHHHhhC
Q 005046 281 SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKA 315 (716)
Q Consensus 281 syV~DVNg--wSFVK~n~kYYddcA~IL~~~~l~~~~ 315 (716)
.||||||+ -++.++.. .+.+.-+.++++..+.
T Consensus 383 ~~VlEVN~s~~P~~~g~~---~~~~~~IA~~ii~~i~ 416 (422)
T 1pk8_A 383 DHIIEVVGSSMPLIGDHQ---DEDKQLIVELVVNKMT 416 (422)
T ss_dssp EEEEEEECTTCCCCTTCH---HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCccchh---hhHHHHHHHHHHHHHH
Confidence 58999999 56666554 3555555566665553
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=249.27 Aligned_cols=274 Identities=18% Similarity=0.241 Sum_probs=194.2
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCc-----------HHH
Q 005046 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYP-----------LEK 72 (716)
Q Consensus 4 ~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfp-----------l~k 72 (716)
.+..+||.|--.+|.+|--.+.+++-|.+.| ++++.+.-. .+......+|++|......++ ...
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G-~~~~~iD~~----~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRG-MEVVQLNLS----RPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTT-CEEEECCTT----SCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCC-cEEEEcccc----cchhhcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 3568999999999988887788888888776 677666543 233444689999998876433 223
Q ss_pred HHHHHH--hcCCcccCCchhhhHhhhHHHHHHHHHhC-------CCCCCcEEEEecCCCccccccccCccceeeecCeee
Q 005046 73 AESYAT--LRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (716)
Q Consensus 73 ai~y~~--lr~p~~iNdl~~q~~l~DR~~~lqiL~~~-------gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~ 143 (716)
.++.++ ..+.++||+..++..++||+.++++|++. |||+|+|+++.+... . +..+.+...+ +
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~-~------~~~~~~~~~~--l 161 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCG-D------DTMRLLEKNG--L 161 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCC-T------THHHHHHHTT--C
T ss_pred HHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCH-H------HHHHHHHhcC--C
Confidence 333333 35899999999999999999999999997 999999999974311 1 1122222122 4
Q ss_pred cCcEEEeecccc---CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce
Q 005046 144 WKPFVEKPVHGD---DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (716)
Q Consensus 144 ~kPfVeKpv~Ge---dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~ 220 (716)
+.|+|+||+.|+ -|++.+-+.. .. +. . .+..+++||||+.+|.|+||||||+.+
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~v~~~----------------~~-l~----~--~~~~~lvQefI~~~G~dirv~VvG~~v 218 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAIVFNQ----------------EG-LN----A--IQPPCVVQNFINHNAVLYKVFVVGESY 218 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEEECSG----------------GG-TT----C----CCEEEEECCCCTTEEEEEEEETTEE
T ss_pred CCCEEEEecCCCcceeeeeEEecCH----------------HH-HH----h--cCCCEEEEEeeCCCCeEEEEEEECCEE
Confidence 699999999763 3333332221 11 11 1 245699999999899999999999999
Q ss_pred eEEEeecCCCC-CC-------ceee-cCC-CCceee---------eeeC--CHHHHHHHHHHHHHhcCceeeEeEEeeC-
Q 005046 221 AHAEARKSPVV-DG-------VVMR-NPD-GKEVRY---------PVLL--TPNEKQMAREVCIAFRQAVCGFDLLRCE- 278 (716)
Q Consensus 221 vhAe~RKSPv~-DG-------~vrr-N~~-gke~r~---------pv~L--t~eEk~iA~ka~kafgq~VcGfDLLRs~- 278 (716)
++++.|..|-+ .| .|.+ |.+ +|+.++ ...+ +++.+++|.++++++|++++|||++++.
T Consensus 219 ~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~ 298 (346)
T 2q7d_A 219 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ 298 (346)
T ss_dssp EEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTT
T ss_pred EEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecC
Confidence 98866655411 01 2332 323 344321 2333 4688999999999999999999999986
Q ss_pred -CCcEEEeccCccccccchhhHHHHHHHHHHHHHHhh
Q 005046 279 -GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAK 314 (716)
Q Consensus 279 -g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~~~ 314 (716)
|++||+|||.|+=.++-.+|...+.+.|.+.+.+.-
T Consensus 299 ~g~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~ 335 (346)
T 2q7d_A 299 TGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQS 335 (346)
T ss_dssp TCCEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCccccccchHHHHHHHHHHHHhhccC
Confidence 679999999999999988898888877777665443
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=201.06 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=171.8
Q ss_pred CCCCCeeEEEEeecCCccCChhHHHHHHHhhcCCceEE--EEeCcceeecCCCcccC-CcCeeeccccCCCc-HHHHHHH
Q 005046 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV--IHFGDKVILEDPIEKWP-ICDCLIAFYSSGYP-LEKAESY 76 (716)
Q Consensus 1 ~~~~~~i~iGVCaM~~Ka~SkPm~~IL~rL~~~g~fei--iiF~d~vIL~e~ve~wP-~~D~lIsf~s~gfp-l~kai~y 76 (716)
|...+..+|||+.-+++. |- .+...+.+.| +++ +++.-.. |...+- .+|+++...+.-+. +..+++.
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G-~~v~~~~~d~~~----~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQ-FELNNIIFDVTL----STELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEE-EEETTEEEEEEE----ESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhcC-cEEEEEEecCCC----CccccCCCceEEEEeccchHHHHHHHHHH
Confidence 556677899998855544 21 3333344433 777 7775422 332222 57988877644332 2455555
Q ss_pred HHh--cCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc
Q 005046 77 ATL--RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (716)
Q Consensus 77 ~~l--r~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G 154 (716)
+.. .+..++|+..+..++.||..++++|+++|||+|++..++.. + +..+.+.-.| ++.|+|+||..|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~---~------~~~~~~~~~~--~~~P~vvKP~~g 145 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSK---E------EVIQLLQSKQ--LILPFIVKPENA 145 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSH---H------HHHHHHHTTC--SCSSEEEEESBC
T ss_pred HHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCH---H------HHHHHHHHcC--CCCCEEEeeCCC
Confidence 544 67678999999999999999999999999999999998733 1 1111121111 348999999997
Q ss_pred c-C---cceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCC
Q 005046 155 D-D---HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPV 230 (716)
Q Consensus 155 e-d---Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv 230 (716)
. . |++++..... .+. ..+..+|+||||+..|.|++|+++|+++++++ |+++.
T Consensus 146 ~g~~~s~gv~~v~~~~-----------------~l~------~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~-~~~~~ 201 (324)
T 1z2n_X 146 QGTFNAHQMKIVLEQE-----------------GID------DIHFPCLCQHYINHNNKIVKVFCIGNTLKWQT-RTSLP 201 (324)
T ss_dssp SSSSGGGEEEEECSGG-----------------GGT------TCCSSEEEEECCCCTTCEEEEEEETTEEEEEE-ECCCC
T ss_pred CCCccceeeEEEeCHH-----------------HHh------hcCCCEEEEEccCCCCcEEEEEEECCEEEEEE-ecCcc
Confidence 5 1 3333333211 111 12567999999998899999999999999985 54541
Q ss_pred -C-----------------------------------CCceeecCCCCceeeeeeCC-HHHHHHHHHHHHHhcCceeeEe
Q 005046 231 -V-----------------------------------DGVVMRNPDGKEVRYPVLLT-PNEKQMAREVCIAFRQAVCGFD 273 (716)
Q Consensus 231 -~-----------------------------------DG~vrrN~~gke~r~pv~Lt-~eEk~iA~ka~kafgq~VcGfD 273 (716)
+ .+.|+.|.+. +...+..++ ++.+++|.++++++|..+||||
T Consensus 202 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD 280 (324)
T 1z2n_X 202 NVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGID 280 (324)
T ss_dssp CCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccCCCccceeeccccchhhhccccccccccccccccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeE
Confidence 1 2456677765 344577888 7999999999999999999999
Q ss_pred EEee-C-CCcEEEeccCccccccchhhH
Q 005046 274 LLRC-E-GRSYVCDVNGWSFVKNSYKYY 299 (716)
Q Consensus 274 LLRs-~-g~syV~DVNgwSFVK~n~kYY 299 (716)
++.. . |.+||+|||..+-...-..|.
T Consensus 281 ~~~~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 281 FIKENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp EECGGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred EEEEcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 9987 4 569999999665444445554
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=191.32 Aligned_cols=237 Identities=21% Similarity=0.208 Sum_probs=162.3
Q ss_pred hhHHHHHHHhhcCCceEEEEeCcc-eee--cCCCcccCCcC-eeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhh
Q 005046 21 APMGQILDRLQAFGEFEVIHFGDK-VIL--EDPIEKWPICD-CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHD 96 (716)
Q Consensus 21 kPm~~IL~rL~~~g~feiiiF~d~-vIL--~e~ve~wP~~D-~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~D 96 (716)
...+.+...+.+.| ++++++.-. ... ......|+.+| ++++.+++ +....+.++++..+...+|+..+..+++|
T Consensus 11 ~~~~~~~~a~~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~d 88 (280)
T 1uc8_A 11 PDERMLFERAEALG-LPYKKVYVPALPMVLGERPKELEGVTVALERCVSQ-SRGLAAARYLTALGIPVVNRPEVIEACGD 88 (280)
T ss_dssp HHHHHHHHHHHHHT-CCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSH-HHHHHHHHHHHHTTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHHHHcC-CcEEEEehhhceeeccCCCcccCCCCEEEECCccc-hhhHHHHHHHHHCCCceeCCHHHHHHhCC
Confidence 34566777777766 666665431 111 11013478899 88887763 22345667778888777899999999999
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHh
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (716)
|....++|+++|||+|++..+... + +....+. .++.|+|+||..|. .|.|+. +++
T Consensus 89 K~~~~~~l~~~gi~~p~~~~~~~~---~------~~~~~~~----~~~~p~vvKp~~g~-----------~~~gv~-~v~ 143 (280)
T 1uc8_A 89 KWATSVALAKAGLPQPKTALATDR---E------EALRLME----AFGYPVVLKPVIGS-----------WGRLLA-XXX 143 (280)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH---H------HHHHHHH----HHCSSEEEECSBCC-----------BCSHHH-HHH
T ss_pred HHHHHHHHHHcCcCCCCeEeeCCH---H------HHHHHHH----HhCCCEEEEECCCC-----------Ccccce-ecc
Confidence 999999999999999999988632 1 1111111 23489999999997 566775 555
Q ss_pred hhCCCcccccccccccc--cCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHH
Q 005046 177 KVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 254 (716)
Q Consensus 177 kign~sS~~~p~~~~~r--~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eE 254 (716)
....-...+.. +.... .+..+|+||||+..|.+++|+++|++++++..|++ +.|+.|.+.++...|..|+++.
T Consensus 144 ~~~el~~~~~~-~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~----~~~~~~~~~g~~~~p~~l~~~~ 218 (280)
T 1uc8_A 144 XXXXXXXXXXX-KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS----AHWITNTARGGQAENCPLTEEV 218 (280)
T ss_dssp HHHC-------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC------------------CEECCCCHHH
T ss_pred cccccchhhhh-HhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec----CCccccccCCccccCCCCCHHH
Confidence 44322222221 00012 26789999999988999999999999999888863 7899999988888899999999
Q ss_pred HHHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCc
Q 005046 255 KQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 255 k~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgw 289 (716)
+++|.++++++|..++|||++.+.+++||+|||..
T Consensus 219 ~~~~~~~~~~lg~g~~~vD~~~~~~g~~~iEiN~r 253 (280)
T 1uc8_A 219 ARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHT 253 (280)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHhCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 99999999999999999999999888999999964
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-20 Score=211.92 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=140.2
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEE
Q 005046 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (716)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IY 162 (716)
...+...+..+++||..+.++|+++|||+|++.++.... +..+.+ ...++.|+|+||..|.
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~---------ea~~~~---~~~~g~PvVVKP~~G~------- 531 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRK---------EALNYF---SQIQDKPIVVKPKSTN------- 531 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTT---------THHHHH---HHSSSSCEEEEETTCC-------
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHH---------HHHHHH---HHhcCCcEEEEeCCCC-------
Confidence 345566778888999999999999999999999887431 111222 1223599999999997
Q ss_pred eccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--C-------
Q 005046 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--D------- 232 (716)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~--D------- 232 (716)
+|.|+. +++.+.+....... +. ..+.+..+|+||||+ |.|++|+|+|+++++|+.|.+|.+ |
T Consensus 532 ----~G~GV~-iv~~~~s~eel~~a-~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~e 603 (750)
T 3ln6_A 532 ----FGLGIS-IFKTSANLASYEKA-IDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQ 603 (750)
T ss_dssp ----SSSSCE-EESSCCCHHHHHHH-HHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHH
T ss_pred ----CCCCEE-EEeCCCCHHHHHHH-HHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHH
Confidence 677765 44433222221110 00 112467899999998 899999999999999999998743 1
Q ss_pred ---------------------------------------------Cc-----eeecCCCCceeeee--eCCHHHHHHHHH
Q 005046 233 ---------------------------------------------GV-----VMRNPDGKEVRYPV--LLTPNEKQMARE 260 (716)
Q Consensus 233 ---------------------------------------------G~-----vrrN~~gke~r~pv--~Lt~eEk~iA~k 260 (716)
|+ +++|.+.|+....+ .++|+.+++|.+
T Consensus 604 LI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~ 683 (750)
T 3ln6_A 604 LVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAE 683 (750)
T ss_dssp HHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHH
T ss_pred HHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHH
Confidence 23 67999999999999 799999999999
Q ss_pred HHHHhcCceeeEeEEeeC---------CCcEEEeccCccccc
Q 005046 261 VCIAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFVK 293 (716)
Q Consensus 261 a~kafgq~VcGfDLLRs~---------g~syV~DVNgwSFVK 293 (716)
||+++|+.||||||+... ++.+|||||+=+-.+
T Consensus 684 aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~ 725 (750)
T 3ln6_A 684 MAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLMY 725 (750)
T ss_dssp HHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCH
T ss_pred HHHHhCCCeEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 999999999999999874 356899999876443
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-20 Score=211.11 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=136.3
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEecc
Q 005046 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~ 165 (716)
++..+..+++||..+.++|+++|||+|++.++... ++....-...++.|+|+||..|.
T Consensus 479 ~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~g~---------- 536 (757)
T 3ln7_A 479 DSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL------------EKAVASYALFENRAVVIKPKSTN---------- 536 (757)
T ss_dssp SBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH------------HHHHHGGGGSSSSCEEEEESSCS----------
T ss_pred CHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCCEEEEeCCCC----------
Confidence 45567788899999999999999999999988732 12211111234599999999997
Q ss_pred CCCChHHHHHh-hhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC------------
Q 005046 166 SAGGGMKELFR-KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV------------ 231 (716)
Q Consensus 166 ~~GgG~~rLfr-kign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~------------ 231 (716)
.|.|+. ++. ++.+... +..-+. ..+.+..+|+||||+ |+|++|+|+|+++++|+.|.+|-+
T Consensus 537 -~G~GV~-iv~~~v~~~ee-l~~al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi 611 (757)
T 3ln7_A 537 -YGLGIT-IFQQGVQNRED-FAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELV 611 (757)
T ss_dssp -TTTTCE-ECSSCCCCHHH-HHHHHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHH
T ss_pred -CCCCeE-EecCCCCCHHH-HHHHHHHHHhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHH
Confidence 666765 331 1122111 111000 122467899999995 899999999999999999998632
Q ss_pred ------------------------------------------CCc-----eeecCCCCceeeee--eCCHHHHHHHHHHH
Q 005046 232 ------------------------------------------DGV-----VMRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (716)
Q Consensus 232 ------------------------------------------DG~-----vrrN~~gke~r~pv--~Lt~eEk~iA~ka~ 262 (716)
.|+ +++|.+.|+....+ .++|+.+++|.+||
T Consensus 612 ~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa 691 (757)
T 3ln7_A 612 AMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGIT 691 (757)
T ss_dssp HHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHH
T ss_pred HhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHH
Confidence 243 58899999999999 99999999999999
Q ss_pred HHhcCceeeEeEEeeC---------CCcEEEeccCcccc
Q 005046 263 IAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 292 (716)
Q Consensus 263 kafgq~VcGfDLLRs~---------g~syV~DVNgwSFV 292 (716)
+++|+.||||||+... ++..|+|||+=+-.
T Consensus 692 ~~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~ 730 (757)
T 3ln7_A 692 KAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMM 730 (757)
T ss_dssp HHHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCH
T ss_pred HHhCCCEEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 9999999999999882 46789999987644
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-19 Score=178.18 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=147.8
Q ss_pred ccCCcCeeeccccCCCc-----HHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccc
Q 005046 53 KWPICDCLIAFYSSGYP-----LEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 127 (716)
Q Consensus 53 ~wP~~D~lIsf~s~gfp-----l~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~ 127 (716)
.|..+|+++.+...++. ....++.++..+..++|+..+..++.||+..+++|+ |+|+|..++..
T Consensus 76 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~------- 144 (316)
T 1gsa_A 76 PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNK------- 144 (316)
T ss_dssp EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT----TSCCEEEESCH-------
T ss_pred ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCH-------
Confidence 45679999987655442 235677777788778899999999999999999887 99999988632
Q ss_pred cccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc--cCcceEEeeccC
Q 005046 128 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMP 205 (716)
Q Consensus 128 ~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyQEFi~ 205 (716)
++....- ..++ |+|+||..|. .|.|+. +++. +. .++..-+.... ....+|+||||+
T Consensus 145 -----~~~~~~~-~~~~-p~vvKP~~g~-----------~g~Gv~-~v~~--~~-~~l~~~~~~~~~~~~~~~lvqe~i~ 202 (316)
T 1gsa_A 145 -----AQLKAFW-EKHS-DIILKPLDGM-----------GGASIF-RVKE--GD-PNLGVIAETLTEHGTRYCMAQNYLP 202 (316)
T ss_dssp -----HHHHHHH-HHHS-SEEEECSSCC-----------TTTTCE-EECT--TC-TTHHHHHHHHTTTTTSCEEEEECCG
T ss_pred -----HHHHHHH-HHcC-CEEEEECCCC-----------CcccEE-EecC--Ch-HHHHHHHHHHHhcCCceEEEecccC
Confidence 1211111 1234 9999999986 444443 1110 11 11110000111 246799999999
Q ss_pred C-CCceeEEEEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHH---hcCceeeEeEEeeCCC
Q 005046 206 T-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIA---FRQAVCGFDLLRCEGR 280 (716)
Q Consensus 206 ~-~G~DIKvytVG~~~vh-Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~ka---fgq~VcGfDLLRs~g~ 280 (716)
. .+.|++|+++|+++++ +..|+++ +|.|+.|.|.|+...|..|+++.+++|.+++++ +|..++|||++ |
T Consensus 203 ~~~~~~~~v~~~~g~~~~~~~~r~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~vD~~----g 276 (316)
T 1gsa_A 203 AIKDGDKRVLVVDGEPVPYCLARIPQ--GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII----G 276 (316)
T ss_dssp GGGGCEEEEEEETTEECSEEEEEECC--SSCSCCCGGGTCEEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEE----T
T ss_pred CCCCCCEEEEEECCEEeeeEEEEeCC--CCCceeEEccCCccccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEec----C
Confidence 7 5899999999999998 9999975 789999999888889999999999999999987 59999999998 4
Q ss_pred cEEEeccCc
Q 005046 281 SYVCDVNGW 289 (716)
Q Consensus 281 syV~DVNgw 289 (716)
+||+|||..
T Consensus 277 ~~~iEvN~r 285 (316)
T 1gsa_A 277 DRLTEINVT 285 (316)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEcCC
Confidence 699999973
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=175.51 Aligned_cols=253 Identities=13% Similarity=0.153 Sum_probs=168.6
Q ss_pred HHHHHHHhhcCCceEEEEeCcceeecCCCcccCCcCeeeccccCCCcHH-HHHHHHHhcCCccc-CCchhhhHhhhHHHH
Q 005046 23 MGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKV 100 (716)
Q Consensus 23 m~~IL~rL~~~g~feiiiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~ 100 (716)
-+.|++-|.+.| ++++.++-.-. ...++....+|++++....++..+ .+...++..+..++ |+..+..+++||..+
T Consensus 24 ~~~v~~al~~~g-~~v~~i~~~~~-~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~ 101 (307)
T 3r5x_A 24 GNEMIANLDKNK-YEIVPITLNEK-MDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNIS 101 (307)
T ss_dssp HHHHHHHSCTTT-EEEEEEECSSG-GGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCC-CEEEEEcccCc-hhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHH
Confidence 457777787766 88877653210 111344568999998765443221 23446667776555 669999999999999
Q ss_pred HHHHHhCCCCCCcEEEEecCCCccccccccCccc-eeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhC
Q 005046 101 YEQLEKYGIPVPRYALVNREVPYQELDYFIEEED-FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG 179 (716)
Q Consensus 101 lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d-~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig 179 (716)
.++|+++|||+|++..+.... +... .+. .++.|+|+||..|. .|.|+. ++.
T Consensus 102 ~~~l~~~Gip~p~~~~~~~~~---------~~~~~~~~----~~~~P~vvKP~~~~-----------~s~Gv~----~v~ 153 (307)
T 3r5x_A 102 KKILRYEGIETPDWIELTKME---------DLNFDELD----KLGFPLVVKPNSGG-----------SSVGVK----IVY 153 (307)
T ss_dssp HHHHHHTTCCCCCEEEEESSS---------CCCHHHHH----HHCSSEEEEECC---------------CCCE----EEC
T ss_pred HHHHHHCCCCCCCEEEEeChh---------hhhHHHHH----hcCCCEEEEeCCCC-----------CCCCEE----EeC
Confidence 999999999999999998431 1111 111 23589999999985 233332 111
Q ss_pred CCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecC-CCCceeeeeeCCHHH-
Q 005046 180 NRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNP-DGKEVRYPVLLTPNE- 254 (716)
Q Consensus 180 n~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG--~vrrN~-~gke~r~pv~Lt~eE- 254 (716)
+.. ++..-+. ..+.+..+|+||||+ |.+++|.++|+++.++..+.+. .+ .++++. ++|...+|+.|++++
T Consensus 154 ~~~-el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~l~~~~~ 228 (307)
T 3r5x_A 154 DKD-ELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHA--AEFFDYNAKYDDASTIEEVIELPAELK 228 (307)
T ss_dssp SHH-HHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEE--EEEETTEEEEEEEEEEEEECCCCHHHH
T ss_pred CHH-HHHHHHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcC--CcccChhhcCCCCCCeEecCCCCHHHH
Confidence 111 0110000 112367899999998 8999999999988666555443 44 566666 677767799999976
Q ss_pred ---HHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccCccccc-----------cchhhHHHHHHHHHHHH
Q 005046 255 ---KQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWSFVK-----------NSYKYYDDAACVLRKMF 310 (716)
Q Consensus 255 ---k~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNgwSFVK-----------~n~kYYddcA~IL~~~~ 310 (716)
+++|.++++++|.. +++||++.+.|++||+|||..+-.. ....|-+-+++||..-+
T Consensus 229 ~~i~~~a~~~~~~lg~~G~~~vD~~~~~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~ 299 (307)
T 3r5x_A 229 ERVNKASLACYKALKCSVYARVDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 299 (307)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEECCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999998 9999999998889999999653221 22345555666665544
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=164.52 Aligned_cols=234 Identities=14% Similarity=0.161 Sum_probs=151.0
Q ss_pred HHHHHHhhcCCceEEEEeCcceeecCCCccc--CCcCeeeccccCCCcHH-HHHHHHHhcCC-cccCCchhhhHhhhHHH
Q 005046 24 GQILDRLQAFGEFEVIHFGDKVILEDPIEKW--PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRK 99 (716)
Q Consensus 24 ~~IL~rL~~~g~feiiiF~d~vIL~e~ve~w--P~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~ 99 (716)
+.+...|.+.| ++++++.-. +.+.... ..+|+++.....++..+ ...+.++..+. ++-|+..+..+++||..
T Consensus 24 ~~l~~al~~~G-~~v~~~~~~---~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 24 AAVLAGLREGG-IDAYPVDPK---EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHHTT-CEEEEECTT---TSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHHCC-CeEEEEecC---chHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHH
Confidence 56777777765 788877643 2221111 36798887763332221 12334555564 45589999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEecCCCccccccccC--ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhh
Q 005046 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIE--EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (716)
Q Consensus 100 ~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e--~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrk 177 (716)
..++|+++|||+|++..+... ++....+ ....+ ..++.|+|+||..|. .|.|+. +
T Consensus 100 ~~~~l~~~gi~~p~~~~~~~~----~~~~~~~~~~~~~~----~~~~~p~vvKP~~g~-----------~~~gv~-~--- 156 (306)
T 1iow_A 100 SKLLWQGAGLPVAPWVALTRA----EFEKGLSDKQLAEI----SALGLPVIVKPSREG-----------SSVGMS-K--- 156 (306)
T ss_dssp HHHHHHHTTCCBCCEEEEEHH----HHHHCCCTHHHHHH----HTTCSSEEEEETTCC-----------TTTTCE-E---
T ss_pred HHHHHHHCCCCCCCeEEEchh----hhhccchhhhhhHH----hccCCCEEEEeCCCC-----------CCCCEE-E---
Confidence 999999999999999988732 0000000 00011 123489999999985 333432 1
Q ss_pred hCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecCCCCcee--eeeeCCH
Q 005046 178 VGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP 252 (716)
Q Consensus 178 ign~sS~~~p~~~~-~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG--~vrrN~~gke~r--~pv~Lt~ 252 (716)
+.+.. ++..-+.. .+.+..+|+||||+ |.+++|.++|+++.++..+... ++ .++.|.+.|+.. .|..|++
T Consensus 157 v~~~~-el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~l~~ 231 (306)
T 1iow_A 157 VVAEN-ALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS--GTFYDYEAKFLSDETQYFCPAGLEA 231 (306)
T ss_dssp ESSGG-GHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS--SSSSCHHHHHTCSCCEEESSCCCCH
T ss_pred eCCHH-HHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC--CCeEchhheecCCCeeEEcCCCCCH
Confidence 21111 11100001 12367899999998 8999999999987777665432 22 344555545443 3556775
Q ss_pred ----HHHHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEeccCc
Q 005046 253 ----NEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 289 (716)
Q Consensus 253 ----eEk~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVNgw 289 (716)
+-+++|.++++++|.. ++|+|++.+. |.+||+|||..
T Consensus 232 ~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~r 274 (306)
T 1iow_A 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCC
Confidence 4578999999999996 9999999986 45999999965
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=159.99 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=151.2
Q ss_pred hHHHHHHHhhcCCceEEEEeCcceeecCCCc--ccCCcCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhH
Q 005046 22 PMGQILDRLQAFGEFEVIHFGDKVILEDPIE--KWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDR 97 (716)
Q Consensus 22 Pm~~IL~rL~~~g~feiiiF~d~vIL~e~ve--~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR 97 (716)
--++|++-|.+.| ++++.++.. +..++ .+..+|++++....++-. ..+...++..+...+ |+..+..+++||
T Consensus 33 s~~~v~~al~~~g-~~v~~i~~~---~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK 108 (317)
T 4eg0_A 33 SGRLVLQGLRDAG-IDAHPFDPA---ERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDK 108 (317)
T ss_dssp HHHHHHHHHHHTT-CEEEEECTT---TSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCH
T ss_pred HHHHHHHHHHHCC-CEEEEEeCC---CchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCH
Confidence 4688888898876 888887732 11111 234678887755443332 244566667776655 678999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhh
Q 005046 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (716)
Q Consensus 98 ~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrk 177 (716)
..+.++|+++|||+|++..+.... +..+.+.---..++.|+|+||..|. .|.|+. +
T Consensus 109 ~~~k~~l~~~Gip~p~~~~~~~~~---------~~~~~~~~~~~~~g~PvvvKP~~~~-----------~s~Gv~----~ 164 (317)
T 4eg0_A 109 FRTKLVWQQTGVPTPPFETVMRGD---------DYAARATDIVAKLGLPLFVKPASEG-----------SSVAVL----K 164 (317)
T ss_dssp HHHHHHHHHTTCCCCCEEEEETTS---------CHHHHHHHHHHHHCSCEEEEECC----------------CCE----E
T ss_pred HHHHHHHHHCCcCCCCEEEEECch---------hHHHHHHHHHHhcCCCEEEEeCCCC-----------CCCCEE----E
Confidence 999999999999999999998431 1111110000234589999999985 233332 1
Q ss_pred hCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecCCCCcee--eeeeCCH
Q 005046 178 VGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP 252 (716)
Q Consensus 178 ign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG--~vrrN~~gke~r--~pv~Lt~ 252 (716)
+.+... +..-+. ....+..+|+||||+. |.++.|.++|+.+.++..+.+. .+ .++.+.+.++.. .|..|++
T Consensus 165 v~~~~e-l~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~--~~~~~~~~k~~~g~~~~~~P~~l~~ 240 (317)
T 4eg0_A 165 VKTADA-LPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA--GEFYDYHAKYVANDTQYLIPCGLPA 240 (317)
T ss_dssp ECSGGG-HHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-----------------CEEESSCSSCH
T ss_pred ECCHHH-HHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeC--CceechhhcccCCCeeEEcCCCCCH
Confidence 222111 110000 1234678999999987 8999999999987777766542 22 223444444444 3556775
Q ss_pred ----HHHHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEeccCcccc
Q 005046 253 ----NEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGWSFV 292 (716)
Q Consensus 253 ----eEk~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVNgwSFV 292 (716)
+-+++|.++++++|.. +|+||++.+. |.+||+|||-.+-.
T Consensus 241 ~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~ 286 (317)
T 4eg0_A 241 EQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGM 286 (317)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCC
Confidence 4578899999999996 9999999885 56999999965433
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=153.77 Aligned_cols=199 Identities=15% Similarity=0.225 Sum_probs=135.0
Q ss_pred CCcCeeeccccCCCcHH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++.+.-.+-.+ .+...++..+... -++..+..+++||..+.++|+++|||+|++..+.+.. .
T Consensus 75 ~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------~ 144 (322)
T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGE----------P 144 (322)
T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTS----------C
T ss_pred cCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECch----------h
Confidence 46899998764332221 3445566766544 4679999999999999999999999999999987441 1
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCC-ce
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD 210 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G-~D 210 (716)
+.+ .++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ | ++
T Consensus 145 -~~~-----~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~~E 200 (322)
T 2fb9_A 145 -PVV-----PFDPPFFVKPANTG-----------SSVGIS----RVERFQ-DLEAALALAFRYDEKAVVEKALS--PVRE 200 (322)
T ss_dssp -CCC-----CSCSCEEEEETTCC-----------TTTTCE----EESSHH-HHHHHHHHHTTTCSEEEEEECCS--SCEE
T ss_pred -hhh-----ccCCCEEEEeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCeEEEEeCCC--CCee
Confidence 111 35689999999985 333432 121111 1111000 122467899999996 7 89
Q ss_pred eEEEEECCc---eeEEEeecCCCCCCc--eeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeC
Q 005046 211 VKVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE 278 (716)
Q Consensus 211 IKvytVG~~---~vhAe~RKSPv~DG~--vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~ 278 (716)
+.|.++|.. +.++..+... .+. +..+.+.|.. ..|..|++ +.+++|.++++++|. .+|+||++.++
T Consensus 201 ~~v~vl~~~~~~~~~~~ei~~~--~~~~~~~~k~~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 278 (322)
T 2fb9_A 201 LEVGVLGNVFGEASPVGEVRYE--APFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE 278 (322)
T ss_dssp EEEEEESSSSCEEEEEEEEEEE--CCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEET
T ss_pred EEEEEEeCCCceEeeeEEEeeC--CCccCHHHcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEEC
Confidence 999999985 5555444431 121 2223333433 34666776 778899999999999 89999999986
Q ss_pred CCcEEEeccCc
Q 005046 279 GRSYVCDVNGW 289 (716)
Q Consensus 279 g~syV~DVNgw 289 (716)
|++||+|||..
T Consensus 279 g~~~vlEiN~r 289 (322)
T 2fb9_A 279 GELYLNELNTI 289 (322)
T ss_dssp TEEEEEEEESS
T ss_pred CcEEEEEEECC
Confidence 66999999964
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=147.16 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=132.3
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++.+.-.+.. ..+..++++.+. |+-++..+..+++||..+.++|+++|||+|++..+.+.. .
T Consensus 90 ~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~-----------~ 158 (346)
T 3se7_A 90 RLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE-----------K 158 (346)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS-----------C
T ss_pred CCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH-----------H
Confidence 478888877544433 245567777775 555678999999999999999999999999999998441 1
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIK 212 (716)
.. -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |.++.
T Consensus 159 ~~----~~~lg~PvvvKP~~~~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~E~~ 216 (346)
T 3se7_A 159 IP----TDQLTYPVFVKPARSG-----------SSFGVS----KVAREE-DLQGAVEAAREYDSKVLIEEAVI--GTEIG 216 (346)
T ss_dssp CC----TTTCCSSEEEEESSCC-----------TTTTCE----EECSHH-HHHHHHHHHTTTCSEEEEEECCC--SEEEE
T ss_pred HH----HHhcCCCEEEEeCCCC-----------CCcCEE----EECCHH-HHHHHHHHHHhCCCcEEEEeCcC--CEEEE
Confidence 11 1234589999999985 233332 121111 1110000 123467899999998 89999
Q ss_pred EEEECCc---eeEEEeecCCCCCCce-------eecCC--CCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEE
Q 005046 213 VYTVGPE---YAHAEARKSPVVDGVV-------MRNPD--GKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 213 vytVG~~---~vhAe~RKSPv~DG~v-------rrN~~--gke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLL 275 (716)
|.++|.. .+....+..+ .+.| ....+ +.....|..|++ +-+++|.++++++|. .+++||++
T Consensus 217 v~vl~~~~~~~~~~~~e~~~--~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 294 (346)
T 3se7_A 217 CAVMGNGPELITGEVDQITL--SHGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLF 294 (346)
T ss_dssp EEEEEETTEEEECCCEEECC--C--------------CGGGSCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred EEEEecCCCeEEEeeEEEec--CCCCcCcccchhccccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 9999874 3333444443 2322 22222 123345777887 667899999999999 69999999
Q ss_pred eeCCC-cEEEeccCc
Q 005046 276 RCEGR-SYVCDVNGW 289 (716)
Q Consensus 276 Rs~g~-syV~DVNgw 289 (716)
.+.++ +||+|||..
T Consensus 295 ~~~~g~~~vlEiN~r 309 (346)
T 3se7_A 295 LTEDGKVVLNEVNTF 309 (346)
T ss_dssp ECTTSCEEEEEEESS
T ss_pred EeCCCCEEEEEEeCC
Confidence 98654 999999954
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=153.43 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=145.5
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++...-.+..+ .+...++..+... -|+..+..+++||..+.++|+++|||+|++..+.+.. ..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKN----------RA 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTTT----------GG
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCCc----------hH
Confidence 5899998765444442 4555667777544 5889999999999999999999999999999987431 11
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCC-ce-
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD- 210 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G-~D- 210 (716)
+... -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ | ++
T Consensus 177 ~~~~--~~~lg~PvvVKP~~g~-----------ss~Gv~----~v~~~~-el~~a~~~~~~~~~~vlVEe~I~--G~~E~ 236 (367)
T 2pvp_A 177 NALD--LMNFNFPFIVKPSNAG-----------SSLGVN----VVKEEK-ELIYALDSAFEYSKEVLIEPFIQ--GVKEY 236 (367)
T ss_dssp GHHH--HCCSCSCEEEEESSCC-----------TTTTCE----EESSTT-SHHHHHHHHTTTCSCEEEEECCT--TCEEE
T ss_pred HHHH--HhccCCCEEEEECCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeCCC--CCcee
Confidence 2211 1235689999999985 344442 222221 1111011 112367899999997 7 89
Q ss_pred --eEEEEECCceeEEEeecCCCCCCc---eeecCCCCc--eeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC
Q 005046 211 --VKVYTVGPEYAHAEARKSPVVDGV---VMRNPDGKE--VRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (716)
Q Consensus 211 --IKvytVG~~~vhAe~RKSPv~DG~---vrrN~~gke--~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~ 278 (716)
+.|.+ +++.+....+..| ++. ++.+.+.|+ ...|..|++ +-+++|.++++++|.. +|++|++.++
T Consensus 237 svi~v~v-~g~~~~~~~ei~~--~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 313 (367)
T 2pvp_A 237 NLAGCKI-KKDFCFSYIEEPN--KQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE 313 (367)
T ss_dssp EEEEEEE-TTEEEEEEEEETT--TTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEET
T ss_pred eEEEEEE-CCEEEEEEEEEec--CCceEcccccccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEEC
Confidence 88888 7774444324444 332 234444343 445777885 4678999999999975 9999999987
Q ss_pred CCcEEEeccCccccccchhhHHHHHHHHHHHHHH
Q 005046 279 GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 312 (716)
Q Consensus 279 g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~ 312 (716)
|++||+|||.-.=.- ....|-+-+.++..++..
T Consensus 314 g~~~vlEiN~rpg~t-~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 314 NEVYLNEINPIPGSL-ANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp TEEEEEEEESSCGGG-GGGGSSSHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCC-cccccCCHHHHHHHHHhC
Confidence 789999999642111 112222445666666554
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=149.44 Aligned_cols=202 Identities=14% Similarity=0.217 Sum_probs=131.9
Q ss_pred CCcCeeeccccCCCcHH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++...-.+-.+ .+...++..+. |+-|+..+..+++||..+.++|+++|||+|++..+.+..
T Consensus 89 ~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------- 157 (343)
T 1e4e_A 89 NHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD----------- 157 (343)
T ss_dssp EECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTC-----------
T ss_pred ccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechh-----------
Confidence 35899998764332111 23444556664 455889999999999999999999999999999987431
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DI 211 (716)
+ +. . ..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |.++
T Consensus 158 -~-~~-~-~~~~~PvvvKP~~~~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~~lvEe~I~--G~E~ 215 (343)
T 1e4e_A 158 -R-PV-A-ATFTYPVFVKPARSG-----------SSFGVK----KVNSAD-ELDYAIESARQYDSKILIEQAVS--GCEV 215 (343)
T ss_dssp -C-CC-G-GGSCSCEEEEESSCC-----------TTTTCE----EECSGG-GHHHHHHHHTTTCSSEEEEECCC--SEEE
T ss_pred -h-hh-h-hccCCCEEEEeCCCC-----------CCCCEE----EeCCHH-HHHHHHHHHHhcCCcEEEEeCcC--CeEE
Confidence 1 11 0 345689999999985 333432 122111 1111000 112467899999997 8999
Q ss_pred EEEEECCc----eeEEEeecCCCCCCceeecCC----CCcee--eeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEe
Q 005046 212 KVYTVGPE----YAHAEARKSPVVDGVVMRNPD----GKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLR 276 (716)
Q Consensus 212 KvytVG~~----~vhAe~RKSPv~DG~vrrN~~----gke~r--~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLR 276 (716)
.|.++|.. +.....+...----.++.+.+ .|+.. .|..|++ +-+++|.++++++|.. +|+||++.
T Consensus 216 ~v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 295 (343)
T 1e4e_A 216 GCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL 295 (343)
T ss_dssp EEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 99999865 223333322100012344554 44433 4555775 6788999999999994 99999999
Q ss_pred eC-CCcEEEeccCc
Q 005046 277 CE-GRSYVCDVNGW 289 (716)
Q Consensus 277 s~-g~syV~DVNgw 289 (716)
+. |.+||+|||..
T Consensus 296 ~~~g~~~viEiN~r 309 (343)
T 1e4e_A 296 QDNGRIVLNEVNTL 309 (343)
T ss_dssp CTTCCEEEEEEESS
T ss_pred eCCCCEEEEEeeCC
Confidence 75 55999999953
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=153.89 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=136.9
Q ss_pred cCCcCeeeccccCCCcHH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccC
Q 005046 54 WPICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (716)
Q Consensus 54 wP~~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e 131 (716)
...+|++++.+.-.+..+ .+...++..+...+ |+..+..+++||..+.++|+++|||+|++..+.+.. +
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~---------~ 161 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPES---------A 161 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTTG---------G
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEeccc---------c
Confidence 346899998874333332 34455677776555 999999999999999999999999999999987431 0
Q ss_pred cc-ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCC-
Q 005046 132 EE-DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG- 208 (716)
Q Consensus 132 ~~-d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G- 208 (716)
.+ ....+ -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ....+..+|+||||+ |
T Consensus 162 ~~~~~~~~-~~~~g~PvvVKP~~~~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~ 222 (377)
T 1ehi_A 162 NNWSWDKI-VAELGNIVFVKAANQG-----------SSVGIS----RVTNAE-EYTEALSDSFQYDYKVLIEEAVN--GA 222 (377)
T ss_dssp GGCCHHHH-HHHHCSCEEEEESSCC-----------TTTTEE----EECSHH-HHHHHHHHHTTTCSCEEEEECCC--CS
T ss_pred chHHHHHH-HHhcCCCEEEEeCCCC-----------CCcCEE----EeCCHH-HHHHHHHHHHhcCCcEEEEcCCC--CC
Confidence 00 01111 1124589999999985 333432 121111 1110000 112356799999996 7
Q ss_pred ceeEEEEECCc---eeEEEeecCCC---CCCce--eecCCCC-ce--eeeeeCCHH----HHHHHHHHHHHhcCc-eeeE
Q 005046 209 TDVKVYTVGPE---YAHAEARKSPV---VDGVV--MRNPDGK-EV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGF 272 (716)
Q Consensus 209 ~DIKvytVG~~---~vhAe~RKSPv---~DG~v--rrN~~gk-e~--r~pv~Lt~e----Ek~iA~ka~kafgq~-VcGf 272 (716)
+++.|.++|+. +.+...+.... ..|.+ +.+.+.| +. ..|..|+++ -+++|.++++++|.. +|+|
T Consensus 223 ~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~v 302 (377)
T 1ehi_A 223 RELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARM 302 (377)
T ss_dssp CEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 89999999874 66665554410 12322 2333333 33 347778865 477999999999997 9999
Q ss_pred eEEeeC-CCcEEEeccC
Q 005046 273 DLLRCE-GRSYVCDVNG 288 (716)
Q Consensus 273 DLLRs~-g~syV~DVNg 288 (716)
|++.+. |.+||+|||.
T Consensus 303 D~~~~~~g~~~vlEiN~ 319 (377)
T 1ehi_A 303 DFLLDENNVPYLGEPNT 319 (377)
T ss_dssp EEEECTTCCEEEEEEES
T ss_pred EEEEeCCCCEEEEEEeC
Confidence 999985 5699999994
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-15 Score=153.05 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=130.0
Q ss_pred CCcCeeeccccCCCcHH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++.+...+..+ .+...++..+... -++..+..+++||..+.++|+++|||+|++..+.+...... ..
T Consensus 86 ~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~-----~~ 160 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY-----EH 160 (364)
T ss_dssp SBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHH-----HH
T ss_pred cCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhccc-----ch
Confidence 45899998763322221 3345556666544 46689999999999999999999999999999874310000 00
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DI 211 (716)
++...+ -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |+++
T Consensus 161 ~~~~~~-~~~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~~lvEe~I~--G~E~ 221 (364)
T 2i87_A 161 NILKLV-NDKLNYPVFVKPANLG-----------SSVGIS----KCNNEA-ELKEGIKEAFQFDRKLVIEQGVN--AREI 221 (364)
T ss_dssp HHHHHH-HHHCCSSEEEEESSCS-----------SCTTCE----EESSHH-HHHHHHHHHHTTCSEEEEEECCC--CEEE
T ss_pred hHHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCeEEEEeCcc--CeEE
Confidence 011111 0124589999999985 333432 121111 1110000 112467899999998 8999
Q ss_pred EEEEECCc---eeEEEeecCCCCCC--ceeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeC-
Q 005046 212 KVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE- 278 (716)
Q Consensus 212 KvytVG~~---~vhAe~RKSPv~DG--~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~- 278 (716)
.|.++|+. +.+...+... .+ .+..+.+.|+. ..|..|++ +.+++|.++++++|. .+++||++.+.
T Consensus 222 ~v~vl~~~~~~~~~~~e~~~~--~~~~~~~~k~~~g~~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~ 299 (364)
T 2i87_A 222 EVAVLGNDYPEATWPGEVVKD--VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTED 299 (364)
T ss_dssp EEEEEESSSCEECCCEEECCS--CCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEEcCCCcEEeeeEEEecC--CCcCCHHHcccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence 99999875 4444444331 22 23344444433 34666876 668899999999999 69999999975
Q ss_pred CCcEEEeccCc
Q 005046 279 GRSYVCDVNGW 289 (716)
Q Consensus 279 g~syV~DVNgw 289 (716)
|.+||+|||.-
T Consensus 300 g~~~viEiN~r 310 (364)
T 2i87_A 300 NQIYINETNAM 310 (364)
T ss_dssp CCEEEEEEESS
T ss_pred CCEEEEEEeCC
Confidence 55999999964
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=144.71 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=125.7
Q ss_pred cCCcCeeecc-ccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 54 WPICDCLIAF-YSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 54 wP~~D~lIsf-~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+.||+.+.. ++....+...++.++..++++.|+..+..+++||....++|++ |||+|++.+.
T Consensus 67 ~~~~D~~~~i~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~~--------------- 130 (305)
T 3df7_A 67 LEKSDAFLIIAPEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSLR--------------- 130 (305)
T ss_dssp HTTCSEEEEECCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEESS---------------
T ss_pred HHhcCEEEEEccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEecc---------------
Confidence 4678874433 2333445677787777788999999999999999999999999 9999999741
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
.++.|+|+||..|. .|.|+. ++.+ .+..+|+||||+ |.++.
T Consensus 131 ---------~~~~P~vvKP~~g~-----------gs~Gv~----~v~~-------------~~~~~lvEe~I~--G~e~s 171 (305)
T 3df7_A 131 ---------PLDCKFIIKPRTAC-----------AGEGIG----FSDE-------------VPDGHIAQEFIE--GINLS 171 (305)
T ss_dssp ---------CCSSSEEEEESSCC---------------CB----CCSS-------------CCTTEEEEECCC--SEEEE
T ss_pred ---------cCCCCEEEEeCCCC-----------CCCCEE----EEec-------------CCCCEEEEeccC--CcEEE
Confidence 12489999999986 344443 2222 367899999999 89999
Q ss_pred EEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCC----HHHHHHHHHHHHHh-c-CceeeEeEEeeCCCcEEEec
Q 005046 213 VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAF-R-QAVCGFDLLRCEGRSYVCDV 286 (716)
Q Consensus 213 vytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt----~eEk~iA~ka~kaf-g-q~VcGfDLLRs~g~syV~DV 286 (716)
|.++++..+++..+... +..+..-.+...|..|+ ++-+++|.++++++ | ..++|+|++.+ |++||+||
T Consensus 172 v~v~~g~~~~~~~~~~~-----~~~~~~~~g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~-~~~~viEi 245 (305)
T 3df7_A 172 VSLAVGEDVKCLSVNEQ-----IINNFRYAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS-DQPYVIEI 245 (305)
T ss_dssp EEEEESSSEEEEEEEEE-----EEETTEEEEEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES-SSEEEEEE
T ss_pred EEEEeCCeEEEEEEeeE-----eccCceeccccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC-CCEEEEEE
Confidence 99997555555443211 11111111223466677 57788999999999 8 46999999996 88999999
Q ss_pred cC
Q 005046 287 NG 288 (716)
Q Consensus 287 Ng 288 (716)
|.
T Consensus 246 Np 247 (305)
T 3df7_A 246 NA 247 (305)
T ss_dssp ES
T ss_pred cC
Confidence 94
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-13 Score=139.46 Aligned_cols=229 Identities=14% Similarity=0.200 Sum_probs=142.1
Q ss_pred CCcCeeecc-ccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAF-YSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf-~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++- |+..---..+...+++.+. |+-++..+..+++||..+.++|+++|||+|++..+.+.... .
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~--------~ 168 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRH--------A 168 (364)
T ss_dssp CCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEETTTGG--------G
T ss_pred CCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEccccc--------h
Confidence 357888877 4432111245667778774 55567899999999999999999999999999999854100 0
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DI 211 (716)
.+...+ -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |.++
T Consensus 169 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~I~--G~E~ 229 (364)
T 3i12_A 169 FSFAEV-ESRLGLPLFVKPANQG-----------SSVGVS----KVANEA-QYQQAVALAFEFDHKVVVEQGIK--GREI 229 (364)
T ss_dssp CCHHHH-HHHHCSSEEEEETTCC-----------TTTTCE----EESSHH-HHHHHHHHHHHHCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------CCcCeE----EeCCHH-HHHHHHHHHHhcCCcEEEEcCcC--CeEE
Confidence 111111 1234589999999985 334432 122111 1111000 123467899999997 7999
Q ss_pred EEEEECCce---eEEEeecCCCCCCceeec---CCC--CceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeC
Q 005046 212 KVYTVGPEY---AHAEARKSPVVDGVVMRN---PDG--KEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE 278 (716)
Q Consensus 212 KvytVG~~~---vhAe~RKSPv~DG~vrrN---~~g--ke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~ 278 (716)
.|.++|+.. ....... | .++.+..+ .++ .....|..|++ +-+++|.++++++|. .++++|++.+.
T Consensus 230 ~v~vl~~~~~~~~~~~ei~-~-~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIV-L-NSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEE-C-CTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEe-c-CCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 999998763 2222222 2 13322221 112 23344667776 456789999999999 59999999884
Q ss_pred -CCcEEEeccCc------ccc-----ccchhhHHHHHHHHHHHHHH
Q 005046 279 -GRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLE 312 (716)
Q Consensus 279 -g~syV~DVNgw------SFV-----K~n~kYYddcA~IL~~~~l~ 312 (716)
|.+||+|||.. |.+ -....|-+-|.+||..-+.+
T Consensus 308 ~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~ 353 (364)
T 3i12_A 308 DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALER 353 (364)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 56999999933 222 12345666666666655543
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=142.94 Aligned_cols=229 Identities=14% Similarity=0.224 Sum_probs=142.0
Q ss_pred CCcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++-..-.+-.+ .+...+++.+ ||+-|+..+..+++||..+.++|+++|||+|++..+.+... ..
T Consensus 116 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~--------~~ 187 (386)
T 3e5n_A 116 AQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTA--------AH 187 (386)
T ss_dssp CCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEEEHHHH--------TT
T ss_pred CCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCccc--------ch
Confidence 35788877632111121 4556677777 56678899999999999999999999999999999984310 00
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DI 211 (716)
.+...+ -..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++
T Consensus 188 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~e-l~~a~~~a~~~~~~vlVEe~I~--G~E~ 248 (386)
T 3e5n_A 188 ADVDTL-IAQLGLPLFVKPANQG-----------SSVGVS----QVRTADA-FAAALALALAYDHKVLVEAAVA--GREI 248 (386)
T ss_dssp CCHHHH-HHHHCSSEEEEESBSC-----------SSTTCE----EECSGGG-HHHHHHHHTTTCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------cCCCEE----EECCHHH-HHHHHHHHHhCCCcEEEEcCCC--CeEE
Confidence 011111 1234589999999985 344442 2222211 111111 123467899999998 7999
Q ss_pred EEEEECCceeEEE---eecCCCCCC--ceeecC-CC--CceeeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeC
Q 005046 212 KVYTVGPEYAHAE---ARKSPVVDG--VVMRNP-DG--KEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE 278 (716)
Q Consensus 212 KvytVG~~~vhAe---~RKSPv~DG--~vrrN~-~g--ke~r~pv~Lt~e----Ek~iA~ka~kafgq~-VcGfDLLRs~ 278 (716)
.|-++|+....+. .+..+ .+ .+.... ++ .....|..|+++ -+++|.++++++|.. ++++|++.+.
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~--~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVH--DAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-------------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT
T ss_pred EEEEEeCCCceEEEeEEEEeC--CcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 9999998753332 33321 33 122222 22 334446778774 468999999999997 9999999885
Q ss_pred -CCcEEEeccCcc------cc-----ccchhhHHHHHHHHHHHHHH
Q 005046 279 -GRSYVCDVNGWS------FV-----KNSYKYYDDAACVLRKMFLE 312 (716)
Q Consensus 279 -g~syV~DVNgwS------FV-----K~n~kYYddcA~IL~~~~l~ 312 (716)
|.+||+|||--+ .+ .....|-+-|.+||..-+.+
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r 372 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALER 372 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 459999999432 22 12235656666666655544
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-14 Score=148.82 Aligned_cols=262 Identities=13% Similarity=0.172 Sum_probs=155.2
Q ss_pred hhHHHHHHHhhcCCceEEEEeC-c---ceeecCC-------Cccc------------------CCcCeeeccccCCCcH-
Q 005046 21 APMGQILDRLQAFGEFEVIHFG-D---KVILEDP-------IEKW------------------PICDCLIAFYSSGYPL- 70 (716)
Q Consensus 21 kPm~~IL~rL~~~g~feiiiF~-d---~vIL~e~-------ve~w------------------P~~D~lIsf~s~gfpl- 70 (716)
.--++|++-|.+.| ||++.++ + ...+..+ ...| ..+|++++-..-.+-.
T Consensus 56 ~Sa~~v~~al~~~~-~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEd 134 (383)
T 3k3p_A 56 LSAESVMRAINYDN-FLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGED 134 (383)
T ss_dssp HHHHHHHHHSCTTT-EEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGCCTTCEEEEECCSTTTSS
T ss_pred HHHHHHHHHhhhcC-CEEEEEEecCCCCEEecccccccccccccccccccccccccccccccccCCCEEEEcCCCCCcch
Confidence 45678888887655 8887765 2 1221100 0122 1578888766544433
Q ss_pred HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCC-CCCCcEEEEecCCCccccccccCccceeeecCeeecCcEE
Q 005046 71 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYG-IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFV 148 (716)
Q Consensus 71 ~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~g-IP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfV 148 (716)
-.+...+++.+ ||+-|+..+..+++||..+.++|+++| ||+|++..+.+.... .++...+ -..++.|+|
T Consensus 135 g~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~--------~~~~~~~-~~~lg~Pvv 205 (383)
T 3k3p_A 135 GSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEPL--------ESKLAEV-EEKLIYPVF 205 (383)
T ss_dssp SHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSCH--------HHHHHHH-HHHCCSSEE
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccch--------hHHHHHH-HHhcCCCEE
Confidence 24566677777 566688999999999999999999999 999999999854100 0011111 123569999
Q ss_pred EeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEE---E
Q 005046 149 EKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA---E 224 (716)
Q Consensus 149 eKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhA---e 224 (716)
+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |+++.|-++|+....+ .
T Consensus 206 VKP~~gg-----------ss~GV~----~v~~~~-el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~~~~~ 267 (383)
T 3k3p_A 206 VKPANMG-----------SSVGIS----KAENRT-DLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKTTLPG 267 (383)
T ss_dssp EEECC-----------------CE----EESSHH-HHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEECCCE
T ss_pred EEeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeEEeeE
Confidence 9999985 233332 122211 1111000 123467899999998 8999999998754322 2
Q ss_pred eecCCCCCCc--eeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEeccCccccc-
Q 005046 225 ARKSPVVDGV--VMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGWSFVK- 293 (716)
Q Consensus 225 ~RKSPv~DG~--vrrN~~gk--e~r~pv~Lt~eE----k~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVNgwSFVK- 293 (716)
.+..+ .+. +.+.-+.+ ....|..|+++. +++|.++++++|.. ++++|++.+. |.+||+|||--+=.-
T Consensus 268 ei~~~--~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t~ 345 (383)
T 3k3p_A 268 EIVKD--VAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFTQ 345 (383)
T ss_dssp EEC-------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC-
T ss_pred EEecC--CCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCCc
Confidence 22221 221 22222222 233456677654 68999999999997 9999999975 559999999543211
Q ss_pred ----------cchhhHHHHHHHHHHHHHH
Q 005046 294 ----------NSYKYYDDAACVLRKMFLE 312 (716)
Q Consensus 294 ----------~n~kYYddcA~IL~~~~l~ 312 (716)
....|-+-|.+||..-+.+
T Consensus 346 ~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 346 WSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp -CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1234555566666554443
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=140.26 Aligned_cols=206 Identities=15% Similarity=0.193 Sum_probs=132.6
Q ss_pred CcCeeeccccCCCcHH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++-..-.+-.+ .+..++++.+. |+-++..+..++.||..+.++|+++|||+|++..+.+.... ...
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~-------~~~ 181 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRST-------LHR 181 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEECTTCCC-------CCH
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEECcccc-------hhH
Confidence 5888888774332221 45566777775 55556899999999999999999999999999999854100 000
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+. -..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.
T Consensus 182 ~~----~~~lg~PvvVKP~~gg-----------ss~GV~----~v~~~~e-L~~a~~~a~~~~~~vlVEe~I~--G~E~~ 239 (373)
T 3lwb_A 182 QE----CERLGLPVFVKPARGG-----------SSIGVS----RVSSWDQ-LPAAVARARRHDPKVIVEAAIS--GRELE 239 (373)
T ss_dssp HH----HHHHCSCEEEEESBCS-----------TTTTCE----EECSGGG-HHHHHHHHHTTCSSEEEEECCE--EEEEE
T ss_pred HH----HHhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHhcCCCEEEeCCCC--CeEEE
Confidence 11 2235699999999985 333432 2222211 111011 123467899999998 89999
Q ss_pred EEEECCcee-----EEEeecCCCCCC----c--eeecCCCC--ceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeE
Q 005046 213 VYTVGPEYA-----HAEARKSPVVDG----V--VMRNPDGK--EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDL 274 (716)
Q Consensus 213 vytVG~~~v-----hAe~RKSPv~DG----~--vrrN~~gk--e~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDL 274 (716)
|-++|.... ....+...-..+ - +..+.+.+ +...|..|++ +-+++|.++++++|. .+++||+
T Consensus 240 v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 319 (373)
T 3lwb_A 240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDF 319 (373)
T ss_dssp EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEE
Confidence 999987632 122222110011 1 11222222 2334677775 567899999999999 5999999
Q ss_pred EeeCCCcEEEeccCcc
Q 005046 275 LRCEGRSYVCDVNGWS 290 (716)
Q Consensus 275 LRs~g~syV~DVNgwS 290 (716)
+.+.+|.||+|||..+
T Consensus 320 ~~~~dg~~vlEIN~~P 335 (373)
T 3lwb_A 320 FLTDDGPVINEINTMP 335 (373)
T ss_dssp EEETTEEEEEEEESSC
T ss_pred EEECCCCEEEEecCCC
Confidence 9987555999999543
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=137.09 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=121.8
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++|+.+....++ ....+.++..+. ++.|+..+..+++||....++|+++|||+|++.... ++ ..
T Consensus 72 ~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-----~~------~~ 140 (331)
T 2pn1_A 72 GVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATM-----AS------FE 140 (331)
T ss_dssp TCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSH-----HH------HH
T ss_pred CCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecH-----HH------hh
Confidence 478898876544444 344556666664 678999999999999999999999999999986421 11 11
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
+.+ ....++.|+|+||..|. .|.|+. +++... ++.. .++....+|+||||+ |..+.|
T Consensus 141 ~~~--~~~~~~~P~vvKp~~g~-----------g~~gv~-~v~~~~----el~~---~~~~~~~~lvee~i~--G~e~~v 197 (331)
T 2pn1_A 141 EAL--AAGEVQLPVFVKPRNGS-----------ASIEVR-RVETVE----EVEQ---LFSKNTDLIVQELLV--GQELGV 197 (331)
T ss_dssp HHH--HTTSSCSCEEEEESBC------------------------------------------CEEEEECCC--SEEEEE
T ss_pred hhh--hcccCCCCEEEEeCCCC-----------CCCCeE-EeCCHH----HHHH---HHHhCCCeEEEecCC--CcEEEE
Confidence 111 11234589999999996 455654 333221 1211 233456899999998 577777
Q ss_pred EEEC----CceeEEEeecCCCCCCceeecCCCCcee-eeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEecc
Q 005046 214 YTVG----PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVN 287 (716)
Q Consensus 214 ytVG----~~~vhAe~RKSPv~DG~vrrN~~gke~r-~pv~Lt~eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVN 287 (716)
.+++ ++++++..|.. +. ..+|... .+..+.++-+++|.++++++|. .+++||++...|++||+|||
T Consensus 198 ~~~~d~~~G~~~~~~~~~~------~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~g~~~~iEiN 269 (331)
T 2pn1_A 198 DAYVDLISGKVTSIFIKEK------LT--MRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269 (331)
T ss_dssp EEEECTTTCCEEEEEEEEE------EE--EETTEEEEEEEECCHHHHHHHHHHHTTTCCCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEEE------EE--ecCCceeEeEEeccHHHHHHHHHHHHHhCCcceEEEEEEEcCCCEEEEEEe
Confidence 6665 56665554432 00 0122222 2335789999999999999999 68999999777889999999
Q ss_pred C
Q 005046 288 G 288 (716)
Q Consensus 288 g 288 (716)
.
T Consensus 270 ~ 270 (331)
T 2pn1_A 270 P 270 (331)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=141.44 Aligned_cols=205 Identities=15% Similarity=0.181 Sum_probs=128.2
Q ss_pred CCcCeeeccccCCCcHH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 55 PICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
..+|++++-..-.+-.+ .+..++++.+ ||+-++..+..++.||..+.++|+++|||+|++..+.+... .
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~---------~ 167 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDA---------T 167 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEEECTTSC---------C
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEechhh---------h
Confidence 35898888765444343 4667777877 46667899999999999999999999999999999985410 0
Q ss_pred cceeeecCeeecCc-EEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCce
Q 005046 133 EDFVEVHGNRFWKP-FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 133 ~d~I~v~G~~~~kP-fVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~D 210 (716)
+..+.---..++.| +|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |++
T Consensus 168 ~~~~~~~~~~lg~P~vvVKP~~gg-----------ss~Gv~----~v~~~~-eL~~a~~~a~~~~~~vlVEe~I~--G~E 229 (372)
T 3tqt_A 168 EGVYQRLLDRWGTSELFVKAVSLG-----------SSVATL----PVKTET-EFTKAVKEVFRYDDRLMVEPRIR--GRE 229 (372)
T ss_dssp TTHHHHHHHHC---CEEEEESSCC-----------SGGGEE----EECSHH-HHHHHHHHHTTTCSCEEEEECCC--SEE
T ss_pred hhHHHHHHHhcCCCeEEEEECCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCCEEEECCCC--CEE
Confidence 11111011235699 999999974 233331 222211 1111000 123467899999998 899
Q ss_pred eEEEEECCceeEE--EeecCCCCCC--ceeecCC-CC--ceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC
Q 005046 211 VKVYTVGPEYAHA--EARKSPVVDG--VVMRNPD-GK--EVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (716)
Q Consensus 211 IKvytVG~~~vhA--e~RKSPv~DG--~vrrN~~-gk--e~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~ 278 (716)
+.|-++|+....+ ..+.-| .++ .++..-+ |+ ....|..|++ +-+++|.++++++|.. +|+||++.+.
T Consensus 230 ~~v~vl~~~~~~~~~~~ei~~-~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~ 308 (372)
T 3tqt_A 230 IECAVLGNGAPKASLPGEIIP-HHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP 308 (372)
T ss_dssp EEEEEEESSSCEECCCEEEEC-C---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEeCCCceEeeeEEEec-CCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC
Confidence 9999999873221 111111 122 2223223 22 2334667776 4568999999999997 9999999886
Q ss_pred -CCcEEEecc
Q 005046 279 -GRSYVCDVN 287 (716)
Q Consensus 279 -g~syV~DVN 287 (716)
|.+||+|||
T Consensus 309 dg~~~vlEIN 318 (372)
T 3tqt_A 309 NNKVLVNEIN 318 (372)
T ss_dssp TCCEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 569999999
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=142.23 Aligned_cols=196 Identities=17% Similarity=0.243 Sum_probs=128.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|++++.+.. +...+.+.++..+.++.|+..+..+++||....++| +++|||+|++..+... + +..+
T Consensus 74 ~~d~v~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~---~------~~~~ 142 (391)
T 1kjq_A 74 KPHYIVPEIEA--IATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSE---S------LFRE 142 (391)
T ss_dssp CCSEEEECSSC--SCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSH---H------HHHH
T ss_pred CCCEEEECCCc--CCHHHHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCH---H------HHHH
Confidence 68999987753 334566778888877889999999999999999999 7999999999887632 1 1111
Q ss_pred eeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 005046 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-----~~gsyIyQEFi~~~G~ 209 (716)
++. .++.|+|+||..|. .|.|+. + +.+. .++..-+.... .++.+|+||||+. |.
T Consensus 143 ~~~----~~g~P~vvKp~~g~-----------gg~Gv~-~---v~~~-~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 201 (391)
T 1kjq_A 143 AVA----DIGYPCIVKPVMSS-----------SGKGQT-F---IRSA-EQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DF 201 (391)
T ss_dssp HHH----HHCSSEEEEESCC--------------CCCE-E---ECSG-GGHHHHHHHHHHHSGGGCCCEEEEECCCC-SE
T ss_pred HHH----hcCCCEEEEeCCCC-----------CCCCeE-E---ECCH-HHHHHHHHHHHhhcccCCCCEEEEEecCC-Ce
Confidence 121 24589999999875 333432 1 1111 11110000111 2568999999986 88
Q ss_pred eeEEEEECCc-eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 210 DIKvytVG~~-~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
++.|.+++.. -++ -.|+. +.++.+.+..+.-.|..|++ +-+++|.++++++|. .++++|++.+.+++||
T Consensus 202 E~sv~~~~~~~g~~----~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~~~~v 276 (391)
T 1kjq_A 202 EITLLTVSAVDGVH----FCAPV-GHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIF 276 (391)
T ss_dssp EEEEEEEEETTEEE----ECCCE-EEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEeCCCeE----EccCc-ceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCcEEE
Confidence 9999887531 111 11111 12222111112224667886 356789999999998 7999999999889999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||.
T Consensus 277 iEiN~ 281 (391)
T 1kjq_A 277 SEVSP 281 (391)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99996
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=142.47 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=127.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|++++.+.. +...+.+.++..+.++.|+..+..+++||....++| +++|||+|++..+... + +..+
T Consensus 82 ~~d~V~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~---~------~~~~ 150 (433)
T 2dwc_A 82 KPDAIIPEIEA--INLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL---D------ELYE 150 (433)
T ss_dssp CCSEEEECSSC--SCHHHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSH---H------HHHH
T ss_pred CCCEEEECccc--CCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCH---H------HHHH
Confidence 68999988753 334566777788877889999999999999999999 8999999999887622 1 1111
Q ss_pred eeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 005046 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-----~~gsyIyQEFi~~~G~ 209 (716)
++. .++.|+|+||..|. .|-|+. .+.+.. ++..-+.... .++.+|+||||+. |.
T Consensus 151 ~~~----~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 209 (433)
T 2dwc_A 151 ACE----KIGYPCHTKAIMSS-----------SGKGSY----FVKGPE-DIPKAWEEAKTKARGSAEKIIVEEHIDF-DV 209 (433)
T ss_dssp HHH----HHCSSEEEEECCC-----------------E----EECSGG-GHHHHHHC---------CCEEEEECCCC-SE
T ss_pred HHH----hcCCCEEEEECCCc-----------CCCCeE----EECCHH-HHHHHHHHHHhhcccCCCCEEEEccCCC-Ce
Confidence 121 24589999999875 233332 222111 1110000111 2567999999976 88
Q ss_pred eeEEEEEC-----CceeEEE----eecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEE
Q 005046 210 DVKVYTVG-----PEYAHAE----ARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 210 DIKvytVG-----~~~vhAe----~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLL 275 (716)
++.|.+++ ++.++.. ..+. .+|... +.-.|..|+++ -+++|.++++++|. .++++|++
T Consensus 210 E~sv~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 281 (433)
T 2dwc_A 210 EVTELAVRHFDENGEIVTTFPKPVGHYQ--IDGDYH------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMF 281 (433)
T ss_dssp EEEECCEEEECTTSCEEEEEECCEEEEE--SSSSEE------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEE
T ss_pred eEEEEEEecccCCCCEeEEEecccceEE--EcCEEE------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 89888763 3422221 1111 133332 22246678874 47889999999998 79999999
Q ss_pred eeCCCcEEEeccCc
Q 005046 276 RCEGRSYVCDVNGW 289 (716)
Q Consensus 276 Rs~g~syV~DVNgw 289 (716)
.+.+++||+|||.-
T Consensus 282 ~~~~~~~viEiN~R 295 (433)
T 2dwc_A 282 VKGDKVWANEVSPR 295 (433)
T ss_dssp EETTEEEEEEEESS
T ss_pred EeCCcEEEEEEeCC
Confidence 99889999999953
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=143.90 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=127.3
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++... .++ ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++..+... +
T Consensus 61 ~~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~ 126 (417)
T 2ip4_A 61 GIDLTLVGPE--APLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREP------------L 126 (417)
T ss_dssp TCCEEEECSS--HHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSH------------H
T ss_pred CCCEEEECCc--hHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCH------------H
Confidence 4788887533 232 345566666774 44599999999999999999999999999999877622 1
Q ss_pred ceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc---ccCcceEEeeccCCCCce
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTD 210 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~~gsyIyQEFi~~~G~D 210 (716)
+....- ..++.|+|+||..|. .|.|+. +++.. .++..-+... ..++.+|+||||+ |.+
T Consensus 127 ~~~~~~-~~~~~P~vvKp~~~~-----------gg~Gv~-~v~~~----~el~~~~~~~~~~~~~~~~lvEe~i~--g~E 187 (417)
T 2ip4_A 127 EALAYL-EEVGVPVVVKDSGLA-----------AGKGVT-VAFDL----HQAKQAVANILNRAEGGEVVVEEYLE--GEE 187 (417)
T ss_dssp HHHHHH-HHHCSSEEEECTTSC-----------SSTTCE-EESCH----HHHHHHHHHHTTSSSCCCEEEEECCC--SCE
T ss_pred HHHHHH-HHcCCCEEEEECCCC-----------CCCCEE-EeCCH----HHHHHHHHHHHhhccCCeEEEEECcc--CcE
Confidence 211110 124589999999985 333432 11111 0111000011 1126799999998 889
Q ss_pred eEEEEEC-CceeEEE--eec-CCCCCCceeecCCCCceeeeeeCCHHHH-----HHHHHHHHHh-----c-CceeeEeEE
Q 005046 211 VKVYTVG-PEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVLLTPNEK-----QMAREVCIAF-----R-QAVCGFDLL 275 (716)
Q Consensus 211 IKvytVG-~~~vhAe--~RK-SPv~DG~vrrN~~gke~r~pv~Lt~eEk-----~iA~ka~kaf-----g-q~VcGfDLL 275 (716)
+.|.+++ ++.+++. .|. .+..++...-|..+-+.-.|..|+++.. ++|.++++++ + ..+++||++
T Consensus 188 ~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~ 267 (417)
T 2ip4_A 188 ATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLM 267 (417)
T ss_dssp EEEEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE
Confidence 9998883 3445543 232 2223444444544444556777988643 3477778876 4 356779999
Q ss_pred eeCCCcEEEeccC
Q 005046 276 RCEGRSYVCDVNG 288 (716)
Q Consensus 276 Rs~g~syV~DVNg 288 (716)
.+.+|+||+|||.
T Consensus 268 ~~~~g~~viEiN~ 280 (417)
T 2ip4_A 268 LTREGPKVLEFNA 280 (417)
T ss_dssp ECSSCEEEEEEES
T ss_pred EeCCCeEEEEEec
Confidence 9887799999996
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=139.30 Aligned_cols=195 Identities=17% Similarity=0.146 Sum_probs=128.8
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|++++.+.. ++..++++++..+ +..|+..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 59 ~~d~v~~~~e~--~~~~~~~~l~~~g-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 123 (369)
T 3aw8_A 59 GLALVTYEFEN--VPVEAARRLEGRL-PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGP------------EDL 123 (369)
T ss_dssp TCSEEEECCTT--CCHHHHHHHHHHS-CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSH------------HHH
T ss_pred CCCEEEECCCC--cCHHHHHHHHHcC-CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCH------------HHH
Confidence 58999877754 4466777888888 89999999999999999999999999999999887632 122
Q ss_pred eeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvyt 215 (716)
...- ..++.|+|+||..|. | .|.|+. + +.+.. ++..-+... .+..+|+||||+. |.++.|.+
T Consensus 124 ~~~~-~~~g~P~vvKp~~~~------~----~g~Gv~-~---v~~~~-el~~~~~~~-~~~~~lvEe~i~~-g~e~sv~~ 185 (369)
T 3aw8_A 124 EEGL-KRVGLPALLKTRRGG------Y----DGKGQA-L---VRTEE-EALEALKAL-GGRGLILEGFVPF-DREVSLLA 185 (369)
T ss_dssp HHHH-TTTCSSEEEEECCC----------------EE-E---ECSHH-HHHHHHTTT-CSSSEEEEECCCC-SEEEEEEE
T ss_pred HHHH-HHcCCCEEEEEcCCC------C----CcceEE-E---ECCHH-HHHHHHHhc-CCCcEEEEEcCCC-CEEEEEEE
Confidence 1110 124589999999874 1 122322 1 21111 111000011 1567999999975 88999998
Q ss_pred ECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEec
Q 005046 216 VGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDV 286 (716)
Q Consensus 216 VG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs~g~syV~DV 286 (716)
++. +++ +..+ ...+.++..+...-.|.. |++ +-+++|.++++++|.. ++++|++.+.|++||+||
T Consensus 186 ~~d~~G~~~-~~~~-----~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~~~~viEi 259 (369)
T 3aw8_A 186 VRGRTGEVA-FYPL-----VENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVGEELLFNEM 259 (369)
T ss_dssp EECTTSCEE-ECCC-----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEE
T ss_pred EECCCCCEE-EECC-----eeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEEEEE
Confidence 873 333 2211 112222222222334555 776 4577889999999996 999999998888999999
Q ss_pred cCc
Q 005046 287 NGW 289 (716)
Q Consensus 287 Ngw 289 (716)
|.-
T Consensus 260 N~R 262 (369)
T 3aw8_A 260 APR 262 (369)
T ss_dssp ESS
T ss_pred eCC
Confidence 963
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=135.18 Aligned_cols=188 Identities=20% Similarity=0.237 Sum_probs=126.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|++++.+.. ++..+.++++..+..+.|+..+..+++||....++|+++|||+|++..+... +++
T Consensus 62 ~~d~v~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 127 (380)
T 3ax6_A 62 GSDVTTYDLEH--IDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDL------------ESD 127 (380)
T ss_dssp TCSEEEESCSC--SCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSH------------HHH
T ss_pred cCCEEEecccC--CCHHHHHHHHHCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCH------------HHH
Confidence 47888876643 3355677788888657799999999999999999999999999999887622 122
Q ss_pred eeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvyt 215 (716)
+. .++.|+|+||..|. | .|.|+. .+.+.. ++.. .++ ..+|+||||+. |.++.|.+
T Consensus 128 ~~----~~~~P~vvKp~~~~------y----~g~Gv~----~v~~~~-el~~---~~~--~~~lvEe~i~~-g~e~sv~~ 182 (380)
T 3ax6_A 128 VR----EFGFPVVQKARKGG------Y----DGRGVF----IIKNEK-DLEN---AIK--GETYLEEFVEI-EKELAVMV 182 (380)
T ss_dssp HH----TTCSSEEEEESCCC---------------EE----EECSGG-GGGG---CCC--SSEEEEECCCE-EEEEEEEE
T ss_pred HH----hcCCCEEEEecCCC------C----CCCCeE----EECCHH-HHHH---Hhc--CCEEEEeccCC-CeeEEEEE
Confidence 21 24589999999874 0 122332 222221 1111 122 78999999975 89999999
Q ss_pred ECC---ceeE-EEeecC--CCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCC-CcEE
Q 005046 216 VGP---EYAH-AEARKS--PVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEG-RSYV 283 (716)
Q Consensus 216 VG~---~~vh-Ae~RKS--Pv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g-~syV 283 (716)
++. ++.. ...++- + ..|.. ...-.|..|++ +-+++|.++++++|. .++++|++.+.+ .+||
T Consensus 183 ~~~~~G~~~~~~~~~~~~~~-~~~~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~v 255 (380)
T 3ax6_A 183 ARNEKGEIACYPVVEMYFDE-DANIC------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILV 255 (380)
T ss_dssp EECSSCCEEEEEEEEEC---------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEE
T ss_pred EECCCCCEEEECCeeeeecc-cCCee------EEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEE
Confidence 864 3322 111111 1 01211 12234666886 567889999999999 499999999865 5999
Q ss_pred EeccCc
Q 005046 284 CDVNGW 289 (716)
Q Consensus 284 ~DVNgw 289 (716)
+|||.-
T Consensus 256 iEiN~R 261 (380)
T 3ax6_A 256 NEIAPR 261 (380)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 999964
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-13 Score=140.77 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=126.5
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|++++. +.-.++..+.+.++..+. ..|+.++..+++||....++|+++|||+|++..+... ++.
T Consensus 71 ~~d~v~~~-~~~~~~~~~a~~~~~~gl-~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 136 (403)
T 4dim_A 71 NLDGAATC-CLDTGIVSLARICDKENL-VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNE------------NEL 136 (403)
T ss_dssp CCSEEECC-SCSTTHHHHHHHHHHHTC-SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSH------------HHH
T ss_pred CCCEEEeC-CcchhHHHHHHHHHHcCc-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHH
Confidence 47999986 333444444455555564 4799999999999999999999999999999877622 122
Q ss_pred eeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc---ccCcceEEeeccCCCCceeE
Q 005046 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~~gsyIyQEFi~~~G~DIK 212 (716)
... -..++.|+|+||..|. .|.|+. + +.+.. ++..-.... ..++.+|+||||+-..-+|.
T Consensus 137 ~~~-~~~~g~P~vvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~ 199 (403)
T 4dim_A 137 KNA-LENLKLPVIVKATDLQ-----------GSKGIY-I---AKKEE-EAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQ 199 (403)
T ss_dssp HHH-HHTSCSSEEEECSCC----------------CE-E---ESSHH-HHHHHHHHHHHHCSSSCCEEEECCCSEEEEEE
T ss_pred HHH-HhcCCCCEEEEECCCC-----------CCCCEE-E---ECCHH-HHHHHHHHHHhcCcCCcEEEEEccCCcEEEEE
Confidence 111 0124599999999985 233332 1 21111 111000011 13577999999996556777
Q ss_pred EEEECCceeEEEeecCCCCCCceeecCC-CC--ceeeeeeCCHHH----HHHHHHHHHHhcCc--eeeEeEEeeCCCcEE
Q 005046 213 VYTVGPEYAHAEARKSPVVDGVVMRNPD-GK--EVRYPVLLTPNE----KQMAREVCIAFRQA--VCGFDLLRCEGRSYV 283 (716)
Q Consensus 213 vytVG~~~vhAe~RKSPv~DG~vrrN~~-gk--e~r~pv~Lt~eE----k~iA~ka~kafgq~--VcGfDLLRs~g~syV 283 (716)
+++.++++...... +.+..+.+ +. +...|..|+++. +++|.++++++|.. +++||++.+.+++||
T Consensus 200 ~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~~~~~~ 273 (403)
T 4dim_A 200 AFVYKNDVLFVMPH------GDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNEVYI 273 (403)
T ss_dssp EEEETTEEEEEEEE------EEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEE
T ss_pred EEEECCEEEEEEEe------cceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEECCcEEE
Confidence 77777776543311 11111111 11 233567788766 67999999999986 789999999889999
Q ss_pred EeccCc
Q 005046 284 CDVNGW 289 (716)
Q Consensus 284 ~DVNgw 289 (716)
+|||.-
T Consensus 274 iEiN~R 279 (403)
T 4dim_A 274 IELTGR 279 (403)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 999964
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=140.80 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=128.9
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++-.. |+.- -.....+++.+ ||+=.+..+..++.||..+.++|+++|||+|++..+.+.. .
T Consensus 97 ~~D~vf~~l~-G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~ 165 (357)
T 4fu0_A 97 KVDLVFPVLH-GKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFN----------E 165 (357)
T ss_dssp ECSEEEECCC-SHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEGGG----------H
T ss_pred CCCEEEECCc-CccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecCCC----------h
Confidence 3676665422 2211 14556777877 5666899999999999999999999999999999987541 1
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DI 211 (716)
+..+.---..++.|+|+||..|. .|.|+. ++.+... +..-+. ....+..++.|+|+. |+.+
T Consensus 166 ~~~~~~~~~~lg~PvvVKP~~gg-----------~s~Gv~----~v~~~~e-l~~~~~~a~~~~~~vlvE~~i~--G~e~ 227 (357)
T 4fu0_A 166 EAAMKEIEANLTYPLFIKPVRAG-----------SSFGIT----KVIEKQE-LDAAIELAFEHDTEVIVEETIN--GFEV 227 (357)
T ss_dssp HHHHHHHHHHCCSSEEEEETTCS-----------SSTTCE----EESSHHH-HHHHHHHHTTTCSEEEEEECCC--SEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCCC-----------CCCceE----EeccHHh-HHHHHHHHhccCCeEEEEEecC--CEEE
Confidence 11111011235699999999985 344442 2222111 111111 234567899999994 8899
Q ss_pred EEEEECCceeEE-----EeecCCCCCCceee----cCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEee
Q 005046 212 KVYTVGPEYAHA-----EARKSPVVDGVVMR----NPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC 277 (716)
Q Consensus 212 KvytVG~~~vhA-----e~RKSPv~DG~vrr----N~~gke~r~pv~Lt~eE----k~iA~ka~kafgq-~VcGfDLLRs 277 (716)
-|.++|.....+ ..+. .+.++. +....+...|..|+++. +++|.++++++|. .+|+||++.+
T Consensus 228 ~v~vl~~~~~~~~~v~~~~~~----~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~ 303 (357)
T 4fu0_A 228 GCAVLGIDELIVGRVDEIELS----SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303 (357)
T ss_dssp EEEEEESSSEEECCCEEEEEC----HHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEecCCceEEEEEEEEcc----cccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEe
Confidence 998888764322 1111 111111 11222334567788754 5789999999998 4999999887
Q ss_pred C-CCcEEEeccCc
Q 005046 278 E-GRSYVCDVNGW 289 (716)
Q Consensus 278 ~-g~syV~DVNgw 289 (716)
. |.+||+|||--
T Consensus 304 ~dg~~~vlEvNt~ 316 (357)
T 4fu0_A 304 PSGEIVFNEVNTI 316 (357)
T ss_dssp TTCCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 5 55999999954
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-13 Score=141.06 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=138.5
Q ss_pred hhHHHHHHHhhcCCceEEEEeCcc---eeecC--CCccc------CCcCeeeccccCCCcHHHHHHHHHhcCCcccCCch
Q 005046 21 APMGQILDRLQAFGEFEVIHFGDK---VILED--PIEKW------PICDCLIAFYSSGYPLEKAESYATLRKPFLVNELE 89 (716)
Q Consensus 21 kPm~~IL~rL~~~g~feiiiF~d~---vIL~e--~ve~w------P~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~ 89 (716)
--++.|...+.+... +|++..+. ...++ +++.+ -.+|++++..-.+ .+..+.+.+.. +.-|+.+
T Consensus 25 gr~~a~a~~~a~~~g-~v~~~~~np~~~~~d~~id~~~l~~~~~~~~~d~V~~~~E~~-~~a~~~~~l~~---~~g~~~~ 99 (412)
T 1vkz_A 25 GREHAIGWAFAKQGY-EVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEF-LVEGVSNWRSN---VFGPVKE 99 (412)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEECCTTGGGTSEECCCCTHHHHHTSCSSCEECCSSGGG-TCC-----CTT---BSSCCHH
T ss_pred HHHHHHHHHHHhCCC-CEEEECCChhhhcccccCCHHHHHHHHHHcCCCEEEECCcHH-HHHHHHHHhhh---hhCCCHH
Confidence 345666766644333 88887431 00000 11111 2579999843332 22345554443 6779999
Q ss_pred hhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCC
Q 005046 90 PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAG 168 (716)
Q Consensus 90 ~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~G 168 (716)
+..+++||..+.++|+++|||+|++..+... ++....- ..++.|+|+||..|. ..++++.....
T Consensus 100 ~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~e~~~~~-~~~g~PvvvKp~~~~gg~Gv~~v~~~~-- 164 (412)
T 1vkz_A 100 VARLEGSKVYAKRFMKKYGIRTARFEVAETP------------EELREKI-KKFSPPYVIKADGLARGKGVLILDSKE-- 164 (412)
T ss_dssp HHHHHHCHHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-TTSCSSEEEEESSCCSSCCEEEESSHH--
T ss_pred HHHHhcCHHHHHHHHHHcCCCCCCEEEECCH------------HHHHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH--
Confidence 9999999999999999999999999877622 1222111 124589999999985 22333322111
Q ss_pred ChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEEC-CceeEEEe---ecCCCCCCceeecCCCCce
Q 005046 169 GGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG-PEYAHAEA---RKSPVVDGVVMRNPDGKEV 244 (716)
Q Consensus 169 gG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG-~~~vhAe~---RKSPv~DG~vrrN~~gke~ 244 (716)
-....++.+-+.+..|. ..+.+|+||||+ |..+.|.+++ ++.+.+.. ...+..++...-|+.+-+.
T Consensus 165 -el~~a~~~~~~~~~~~g-------~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (412)
T 1vkz_A 165 -ETIEKGSKLIIGELIKG-------VKGPVVIDEFLA--GNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGS 234 (412)
T ss_dssp -HHHHHHHHHHHTSSSTT-------CCSCEEEEECCC--SEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEE
T ss_pred -HHHHHHHHHHhhccccC-------CCCeEEEEECCc--CcEEEEEEEECCCEEEEeeeeEeeeeccCCCCCCCCCCceE
Confidence 01111221110000111 124899999998 8888888873 33333322 1111123333334433334
Q ss_pred eeeeeCCHHH----HHHHHHHHHHh-----cC-ceeeEeEEeeCCCcEEEeccC
Q 005046 245 RYPVLLTPNE----KQMAREVCIAF-----RQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 245 r~pv~Lt~eE----k~iA~ka~kaf-----gq-~VcGfDLLRs~g~syV~DVNg 288 (716)
-.|..|+++. +++|.++++++ +. .++++|++.+.+|+||+|||-
T Consensus 235 ~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g~~viEiN~ 288 (412)
T 1vkz_A 235 WGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNV 288 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCCcEEEEEec
Confidence 4677788754 67899999999 44 677899999877799999996
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.7e-13 Score=140.22 Aligned_cols=207 Identities=17% Similarity=0.144 Sum_probs=127.1
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++..- .++ ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++..+... +
T Consensus 62 ~~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~ 127 (424)
T 2yw2_A 62 GVDFTIVGPE--APLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDF------------E 127 (424)
T ss_dssp TCSEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------H
T ss_pred CCCEEEECCc--hHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCH------------H
Confidence 3688887432 333 345566777774 44599999999999999999999999999999877622 1
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+....- ..++.|+|+||..|. ..++++..... -....++.+.+. +.|. ..+..+|+||||+ |.++.
T Consensus 128 ~~~~~~-~~~~~PvvvKp~~g~gg~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~s 194 (424)
T 2yw2_A 128 KAKEYV-EKVGAPIVVKADGLAAGKGAVVCETVE---KAIETLDRFLNK-KIFG------KSSERVVIEEFLE--GEEAS 194 (424)
T ss_dssp HHHHHH-HHHCSSEEEEESSCCTTCSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEE
T ss_pred HHHHHH-HHcCCcEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CcEEE
Confidence 221110 124589999999875 22333322111 011222222110 1111 0246799999998 77777
Q ss_pred EEEEC-CceeEE--Eeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---cC---ceeeEeEEe
Q 005046 213 VYTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLR 276 (716)
Q Consensus 213 vytVG-~~~vhA--e~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kaf---gq---~VcGfDLLR 276 (716)
|.++. ++.+++ +.|. ..+.++...-|+.+-+.-.|.. |+++.. ++|.++++++ |. .++++|++.
T Consensus 195 v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 274 (424)
T 2yw2_A 195 YIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMI 274 (424)
T ss_dssp EEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 76663 334443 3332 2223444333443434445665 888653 5677888887 43 467799999
Q ss_pred eCCCcEEEeccCc
Q 005046 277 CEGRSYVCDVNGW 289 (716)
Q Consensus 277 s~g~syV~DVNgw 289 (716)
+.+|+||+|||.-
T Consensus 275 ~~~g~~viEiN~R 287 (424)
T 2yw2_A 275 TKEGPKVLEFNVR 287 (424)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCcEEEEEecC
Confidence 9877999999964
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=130.30 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=124.7
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
+|++|++...+.++...+ .+..+-+ =|+.++..+++||....++|+++|||+|++..+... +|..
T Consensus 76 id~V~~~~e~~~~~~a~l--~e~lglp-g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~~ 140 (425)
T 3vot_A 76 FDGVMTLFEPALPFTAKA--AEALNLP-GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTL------------ADLE 140 (425)
T ss_dssp CSEEECCCGGGHHHHHHH--HHHTTCS-SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSG------------GGGT
T ss_pred CCEEEECCchhHHHHHHH--HHHcCCC-CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcH------------HHHH
Confidence 577888766665553322 1233322 368899999999999999999999999999988732 1111
Q ss_pred eecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEE
Q 005046 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
...++.|+|+||..|. ..++++-..... ....++.+...+. .+.. ....+..+|.||||+-.--.|-++
T Consensus 141 ---~~~~g~P~vvKp~~g~gs~Gv~~v~~~~e---l~~a~~~~~~~~~---~~~~~~~~~~~~~lvEe~i~G~e~sv~~~ 211 (425)
T 3vot_A 141 ---NRKLSYPLVVKPVNGFSSQGVVRVDDRKE---LEEAVRKVEAVNQ---RDLNRFVHGKTGIVAEQFIDGPEFAIETL 211 (425)
T ss_dssp ---TCCCCSSEEEEESCC-----CEEECSHHH---HHHHHHHHHHHTT---SSHHHHHTTCCCEEEEECCCSCEEEEEEE
T ss_pred ---HhhcCCcEEEEECCCCCCCCceEechHHH---HHHHHHHHHhhhh---hhhhhhccCCCcEEEEEEecCcEEEEEEE
Confidence 1345699999999985 122222221110 1122222211100 0000 112467799999997544456667
Q ss_pred EECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC--ceeeEeEEeeCCC-cEEEec
Q 005046 215 TVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDV 286 (716)
Q Consensus 215 tVG~~~vh-Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~kafgq--~VcGfDLLRs~g~-syV~DV 286 (716)
+.+++... +..++-. ..|. +....+...|..|+++. .++|.++++++|. .++.+|++.+.+| +||+||
T Consensus 212 ~~~g~~~~~~~~~~~~-~~~~---~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEi 287 (425)
T 3vot_A 212 SIQGNVHVLSIGYKGN-SKGP---FFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEV 287 (425)
T ss_dssp EETTEEEEEEEEEEEC-CCCS---BCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEE
T ss_pred EeCCcEEEEeEEEEec-cCCC---ccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEE
Confidence 76766533 3333332 1222 12234445688888864 4678999999997 4999999988654 999999
Q ss_pred cC
Q 005046 287 NG 288 (716)
Q Consensus 287 Ng 288 (716)
|.
T Consensus 288 N~ 289 (425)
T 3vot_A 288 GA 289 (425)
T ss_dssp ES
T ss_pred ec
Confidence 96
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.5e-13 Score=141.87 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=124.6
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++.+. .++ ..+.+.++..+..++ ++..+..+++||....++|+++|||+|++..+... + +..
T Consensus 83 ~~d~vi~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~ 151 (451)
T 2yrx_A 83 AIDLTIVGPE--APLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSY---E------EAK 151 (451)
T ss_dssp TCSEEEECSH--HHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCH---H------HHH
T ss_pred CCCEEEECCc--hHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH---H------HHH
Confidence 4788887433 232 345666777775444 89999999999999999999999999999887622 1 111
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+++. .++.|+|+||..|. ..++++..... -....++.+-+. +.|. ..+..+|+||||+ |.++.
T Consensus 152 ~~~~----~~~~PvVvKp~~~~gg~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~s 215 (451)
T 2yrx_A 152 AYIE----QKGAPIVIKADGLAAGKGVTVAQTVE---EALAAAKAALVD-GQFG------TAGSQVVIEEYLE--GEEFS 215 (451)
T ss_dssp HHHH----HHCSSEEEEECC----CCEEEESSHH---HHHHHHHHHHHH-SCCB------TTBCCEEEEECCC--SEEEE
T ss_pred HHHH----hcCCcEEEEeCCCCCCCcEEEECCHH---HHHHHHHHHHhc-cccC------CCCCeEEEEECCc--CcEEE
Confidence 1221 24589999999985 12222222110 011112211100 0011 0246799999999 78888
Q ss_pred EEEE-CCceeEEE--eec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---cC---ceeeEeEEe
Q 005046 213 VYTV-GPEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLR 276 (716)
Q Consensus 213 vytV-G~~~vhAe--~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kaf---gq---~VcGfDLLR 276 (716)
|.++ .++.+.+. .|. ..+.++...-|..+.+.-.|.. |+++.. ++|.++++++ |. .+++||++.
T Consensus 216 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 295 (451)
T 2yrx_A 216 FMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMA 295 (451)
T ss_dssp EEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 8776 33444443 221 2223444333444444445665 888653 3567777776 43 467789999
Q ss_pred eCCCcEEEeccC
Q 005046 277 CEGRSYVCDVNG 288 (716)
Q Consensus 277 s~g~syV~DVNg 288 (716)
+.+|+||+|||.
T Consensus 296 ~~~g~~viEiN~ 307 (451)
T 2yrx_A 296 TANGPKVIEFNA 307 (451)
T ss_dssp ETTEEEEEEEES
T ss_pred eCCCcEEEEEec
Confidence 987899999994
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=129.00 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=147.2
Q ss_pred EEEEeecCCccCChhHHHHHHHhhcCCceEEEEeCcc-----------eeecCC-----C-cccCCcCeeeccccCCCcH
Q 005046 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDK-----------VILEDP-----I-EKWPICDCLIAFYSSGYPL 70 (716)
Q Consensus 8 ~iGVCaM~~Ka~SkPm~~IL~rL~~~g~feiiiF~d~-----------vIL~e~-----v-e~wP~~D~lIsf~s~gfpl 70 (716)
+|||.--.. --+.+...+.+.| ++++++... .+.... + +-...||++...+ ...+.
T Consensus 16 ~IlIlG~G~-----~g~~la~aa~~~G-~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~-e~~~~ 88 (389)
T 3q2o_A 16 TIGIIGGGQ-----LGRMMALAAKEMG-YKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF-ENIDY 88 (389)
T ss_dssp EEEEECCSH-----HHHHHHHHHHHTT-CEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC-CCCCH
T ss_pred EEEEECCCH-----HHHHHHHHHHHcC-CEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc-ccccH
Confidence 566654332 2455666666666 777777521 111000 0 1123478764433 33444
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEe
Q 005046 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (716)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (716)
.++++++..+. +.|+.++..+++||....++|+++|||+|++..+... ++.... -..++.|+|+|
T Consensus 89 -~~~~~l~~~g~-~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~~~~-~~~~g~P~vvK 153 (389)
T 3q2o_A 89 -RCLQWLEKHAY-LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQ------------EQLTEA-IAELSYPSVLK 153 (389)
T ss_dssp -HHHHHHHHHSC-CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSEEEE
T ss_pred -HHHHHHHhhCc-cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHhcCCCEEEE
Confidence 45666777776 7799999999999999999999999999999988732 122111 11345999999
Q ss_pred ecccc-C-cceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeE-EE
Q 005046 151 PVHGD-D-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAH-AE 224 (716)
Q Consensus 151 pv~Ge-d-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vh-Ae 224 (716)
|..|. + .++++...... ....++.. .++.+|+||||+ ++.++.|.++++ +++. ..
T Consensus 154 p~~~~~~g~Gv~~v~~~~e---l~~~~~~~---------------~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~~~ 214 (389)
T 3q2o_A 154 TTTGGYDGKGQVVLRSEAD---VDEARKLA---------------NAAECILEKWVP-FEKEVSVIVIRSVSGETKVFPV 214 (389)
T ss_dssp ESSCCSSSCCEEEESSGGG---HHHHHHHH---------------HHSCEEEEECCC-CSEEEEEEEEECTTCCEEECCC
T ss_pred eCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEeccc-CceEEEEEEEEcCCCCEEEecC
Confidence 99983 2 55555443321 12222211 146799999998 358999999864 2211 11
Q ss_pred eecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeCC-CcEEEeccCcc
Q 005046 225 ARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCDVNGWS 290 (716)
Q Consensus 225 ~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq~-VcGfDLLRs~g-~syV~DVNgwS 290 (716)
.+.-+ .+|.+ .+...|..|+++ -+++|.++++++|.. ++++|++.+.+ .+||+|||--.
T Consensus 215 ~e~~~-~~g~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~ 279 (389)
T 3q2o_A 215 AENIH-VNNIL------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRP 279 (389)
T ss_dssp EEEEE-ETTEE------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSC
T ss_pred eeeEE-cCCce------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCC
Confidence 11100 13332 123345667764 467899999999996 99999999854 59999999653
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-13 Score=141.05 Aligned_cols=207 Identities=16% Similarity=0.162 Sum_probs=125.7
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcc
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~ 133 (716)
.+|++++.+. .++ ..+.+.++..+..++ |+..+..+++||....++|+++|||+|++..+... + +..
T Consensus 62 ~~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~---~------~~~ 130 (422)
T 2xcl_A 62 QVGLTIVGPE--VPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSF---D------EAK 130 (422)
T ss_dssp TEEEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH---H------HHH
T ss_pred CCCEEEECCc--HHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCH---H------HHH
Confidence 3677777433 232 455666777775444 99999999999999999999999999999887622 1 111
Q ss_pred ceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
+++. .++.|+|+||..|. ..++++..... -....++.+-+. +.|. ..+..+|+||||+ |.++.
T Consensus 131 ~~~~----~~~~P~vvKp~~~~~g~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~s 194 (422)
T 2xcl_A 131 AYVQ----EKGAPIVIKADGLAAGKGVTVAMTEE---EAIACLHDFLED-EKFG------DASASVVIEEYLS--GEEFS 194 (422)
T ss_dssp HHHH----HHCSSEEEEESSCGGGTCEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEE
T ss_pred HHHH----hcCCCEEEEeCCCCCCCcEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCc--CcEEE
Confidence 1221 24589999999985 22333332111 111222222110 1111 0246799999998 88898
Q ss_pred EEEEC-CceeEE--Eeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---cC---ceeeEeEEe
Q 005046 213 VYTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLR 276 (716)
Q Consensus 213 vytVG-~~~vhA--e~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kaf---gq---~VcGfDLLR 276 (716)
|.++. ++.+++ +.|. ..+.++...-|..|-+.-.|.. |+++.. ++|.++++++ |. .+++||++.
T Consensus 195 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~ 274 (422)
T 2xcl_A 195 LMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLML 274 (422)
T ss_dssp EEEEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEE
Confidence 88773 333443 2221 1122333333333333445665 888643 3677788776 44 457789999
Q ss_pred eCCCcEEEeccCc
Q 005046 277 CEGRSYVCDVNGW 289 (716)
Q Consensus 277 s~g~syV~DVNgw 289 (716)
+.+|+||+|||.-
T Consensus 275 ~~~g~~viEiN~R 287 (422)
T 2xcl_A 275 TENGSKVIEFNAR 287 (422)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCcEEEEEecC
Confidence 9878999999953
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=127.42 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=124.8
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++++.|+.-..+..+.+..+..+.++.++.++..+++||....++|+++|||+|.+.
T Consensus 63 ~~D~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~-------------------- 122 (363)
T 4ffl_A 63 RVDAVLPVNENLACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR-------------------- 122 (363)
T ss_dssp SSSEEEECCCCHHHHHHHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS--------------------
T ss_pred CCCEEEECCCChhHHHHHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce--------------------
Confidence 589999887643233334444566677788999999999999999999999999998641
Q ss_pred eeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvyt 215 (716)
.++.|+|+||..|. .|.|+. . +.|... .......++.|||+. |..+-|.+
T Consensus 123 ------~ig~P~vvKp~~g~-----------g~~gv~-~---v~~~~~-------~~~~~~~~~~ee~i~--g~e~sv~~ 172 (363)
T 4ffl_A 123 ------PSKPPYFVKPPCES-----------SSVGAR-I---IYDDKD-------LEGLEPDTLVEEYVE--GEVVSLEV 172 (363)
T ss_dssp ------CSSSCEEEECSSCC-----------TTTTCE-E---EC-------------CCCTTCEEEECCC--SEEEEEEE
T ss_pred ------ecCCCEEEEECCCC-----------CCcCeE-E---eccHHH-------hhhhccchhhhhhcc--CcEEEEEE
Confidence 12499999999886 444543 2 222211 122466789999996 66666666
Q ss_pred ECC--cee-EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccC
Q 005046 216 VGP--EYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 216 VG~--~~v-hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNg 288 (716)
++. ..+ +...+. ...+..+...-.|..+.++-+++|.++++++|.. +++||++.+.+++||+|||-
T Consensus 173 ~~d~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~~~~viEiN~ 242 (363)
T 4ffl_A 173 VGDGSHFAVVKETLV-------HIDETYDCHMVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPKGLRVIEIDA 242 (363)
T ss_dssp EEESSCEEECCCEEE-------EECTTSCEEEEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETTEEEEEEEEC
T ss_pred EEECCeEEEEEEEEe-------ccCCcccceeecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCCeEEEEEEeC
Confidence 643 222 112221 1223344455668889999999999999999985 99999999999999999997
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=140.35 Aligned_cols=206 Identities=13% Similarity=0.137 Sum_probs=124.2
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++++... .++ ..+.+.++..+..++ |+..+..+++||....++|+++|||+|++..+... ++
T Consensus 89 ~d~V~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 154 (452)
T 2qk4_A 89 IEFVVVGPE--APLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKP------------EE 154 (452)
T ss_dssp CCEEEECSS--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSH------------HH
T ss_pred CCEEEECCc--HHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 688887432 332 345566667775444 99999999999999999999999999999887622 12
Q ss_pred eeeecCeeecCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeE
Q 005046 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIK 212 (716)
....- ..++.| +|+||..|. ..++++. .+.. -....++.+-+. +.|. ..+..+|+||||+ |.++.
T Consensus 155 ~~~~~-~~~g~P~vvvKp~~~~gg~Gv~~v--~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~s 221 (452)
T 2qk4_A 155 ACSFI-LSADFPALVVKASGLAAGKGVIVA--KSKE-EACKAVQEIMQE-KAFG------AAGETIVIEELLD--GEEVS 221 (452)
T ss_dssp HHHHH-HHCSSCEEEEEESBC---CCEEEC--SSHH-HHHHHHHHHTTC--------------CCEEEEECCC--SEEEE
T ss_pred HHHHH-HhCCCCeEEEEeCCCCCCCCEEEe--CCHH-HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CCeEE
Confidence 21110 124589 999999885 1222222 1110 111222222110 0010 0246799999999 88999
Q ss_pred EEEEC-Cc-eeE-EEeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc------CceeeEeEEe
Q 005046 213 VYTVG-PE-YAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR------QAVCGFDLLR 276 (716)
Q Consensus 213 vytVG-~~-~vh-Ae~RK-SPv~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~kafg------q~VcGfDLLR 276 (716)
|.+++ ++ +++ ...|. -.+.++...-|+.+-+.-.|.. |+++.. ++|.+++++++ ..+++||++.
T Consensus 222 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~ 301 (452)
T 2qk4_A 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIML 301 (452)
T ss_dssp EEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEE
T ss_pred EEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 98884 33 332 22221 1123443333333333345665 887543 57788888873 3589999999
Q ss_pred eCCCcEEEeccCc
Q 005046 277 CEGRSYVCDVNGW 289 (716)
Q Consensus 277 s~g~syV~DVNgw 289 (716)
+.+|+||+|||.-
T Consensus 302 ~~~g~~viEiN~R 314 (452)
T 2qk4_A 302 TKNGPKVLEFNCR 314 (452)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCcEEEEEecc
Confidence 8877999999963
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=136.99 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=132.4
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|++|+. ...|+ ..+.+.++..+..++ |+..+..+++||..+.++|+++|||+|++..+... + +..+
T Consensus 84 id~vv~g--~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~---~------ea~~ 152 (442)
T 3lp8_A 84 IELVVIG--PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDT---N------SAYK 152 (442)
T ss_dssp CCEEEEC--SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSH---H------HHHH
T ss_pred CCEEEEC--CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCH---H------HHHH
Confidence 5777762 33344 245667778887666 99999999999999999999999999999888722 1 1112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
++. .++.|+|+||..|. ..++++-.... -....++.+-+. ..|. ..+..+|+||||+ |.++-|
T Consensus 153 ~~~----~~g~PvVvKp~~~~gg~GV~iv~~~e---el~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv 216 (442)
T 3lp8_A 153 FID----KHKLPLVVKADGLAQGKGTVICHTHE---EAYNAVDAMLVH-HKFG------EAGCAIIIEEFLE--GKEISF 216 (442)
T ss_dssp HHH----HSCSSEEEEESSCCTTTSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHH----HcCCcEEEeECCCCCCCeEEEeCCHH---HHHHHHHHHHhh-cccC------CCCCeEEEEEeec--CcEEEE
Confidence 222 24599999999875 22333322111 011222222110 0111 1235799999999 788877
Q ss_pred EEE--CCceeE-EEee-cCCCCCCceeecCCCCceeeeee-CCHHHHHH--------HHHHHHHhcCce---eeEeEEee
Q 005046 214 YTV--GPEYAH-AEAR-KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQM--------AREVCIAFRQAV---CGFDLLRC 277 (716)
Q Consensus 214 ytV--G~~~vh-Ae~R-KSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~i--------A~ka~kafgq~V---cGfDLLRs 277 (716)
.++ |..++. +..+ .-++.||+.--|+-|-+.-.|.. |+++..+- |.++.+++|..+ +++|++.+
T Consensus 217 ~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~ 296 (442)
T 3lp8_A 217 FTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIK 296 (442)
T ss_dssp EEEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE
T ss_pred EEEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe
Confidence 776 444432 2322 23334666666776767667876 88866543 556668888754 55999999
Q ss_pred CCCcEEEeccCc
Q 005046 278 EGRSYVCDVNGW 289 (716)
Q Consensus 278 ~g~syV~DVNgw 289 (716)
.+++||+|||.-
T Consensus 297 ~~g~~viEiN~R 308 (442)
T 3lp8_A 297 KNEPKLLEYNVR 308 (442)
T ss_dssp TTEEEEEEEESS
T ss_pred CCCeEEEEEecC
Confidence 888999999953
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-11 Score=127.54 Aligned_cols=190 Identities=13% Similarity=0.180 Sum_probs=125.9
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++++-|. ..+ ..++++++.. .++.++..+..+++||....++|+++|||+|++..+... ++.
T Consensus 96 ~~D~V~~~~e-~~~-~~~~~~l~~~-~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~------------~e~ 160 (419)
T 4e4t_A 96 LCEAVSTEFE-NVP-AASLDFLART-TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESA------------AAL 160 (419)
T ss_dssp HCSEEEECCT-TCC-HHHHHHHHTT-SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSH------------HHH
T ss_pred cCCEEEEccC-cCC-HHHHHHHHcc-CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCH------------HHH
Confidence 5888884432 233 4666777776 689999999999999999999999999999999988732 222
Q ss_pred eeecCee----ecCcEEEeec-cccC-cceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCc
Q 005046 136 VEVHGNR----FWKPFVEKPV-HGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (716)
Q Consensus 136 I~v~G~~----~~kPfVeKpv-~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~ 209 (716)
.... .. + .|+|+||. .|.+ .++++...... ....++.. .++.+|+||||+- +.
T Consensus 161 ~~~~-~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~e---l~~a~~~~---------------~~~~~lvEe~i~~-~~ 219 (419)
T 4e4t_A 161 AALD-DAALDAV-LPGILKTARLGYDGKGQVRVSTARE---ARDAHAAL---------------GGVPCVLEKRLPL-KY 219 (419)
T ss_dssp HTSC-HHHHHTT-CSEEEEESSSCCTTTTEEEECSHHH---HHHHHHHT---------------TTCCEEEEECCCE-EE
T ss_pred HHHH-Hhhcccc-CCEEEEecCCCCCCCceEEECCHHH---HHHHHHhc---------------CCCcEEEeecCCC-Ce
Confidence 2211 22 5 89999999 6652 33333322110 11112111 3577999999986 67
Q ss_pred eeEEEEECC---ceeE---EEeecCCCCCCceeecCCCCceeeeee-CCH----HHHHHHHHHHHHhcCc-eeeEeEEee
Q 005046 210 DVKVYTVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRC 277 (716)
Q Consensus 210 DIKvytVG~---~~vh---Ae~RKSPv~DG~vrrN~~gke~r~pv~-Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs 277 (716)
.+-|.++++ +++. .+.+.. +|.+. +.-.|.. |++ +-+++|.++++++|.. +++||++.+
T Consensus 220 Eisv~v~~~~~G~~~~~~~~e~~~~---~g~~~------~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~ 290 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPLAQNVHH---NGILA------LTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVL 290 (419)
T ss_dssp EEEEEEEECTTSCEEECCCEEEEEE---TTEEE------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEeCeEEEee---CCeEE------EEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEe
Confidence 888988853 2221 111211 22221 1123555 776 4467899999999986 999999998
Q ss_pred CC-CcEEEeccCcc
Q 005046 278 EG-RSYVCDVNGWS 290 (716)
Q Consensus 278 ~g-~syV~DVNgwS 290 (716)
.+ .+||+|||-=.
T Consensus 291 ~dG~~~v~EiNpR~ 304 (419)
T 4e4t_A 291 EDGSFVANEMAPRP 304 (419)
T ss_dssp TTCCEEEEEEESSC
T ss_pred CCCCEEEEEEeCCC
Confidence 65 49999999643
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=127.36 Aligned_cols=185 Identities=17% Similarity=0.234 Sum_probs=121.0
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEe
Q 005046 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (716)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (716)
..++++++. +..+.++..+..+++||....++|+++|||+|++..+.... .++.... -..++.|+|+|
T Consensus 99 ~~~l~~l~~-g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------~~~~~~~-~~~~g~P~VvK 166 (403)
T 3k5i_A 99 TYALEEVAS-EVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENT----------PAELAKV-GEQLGYPLMLK 166 (403)
T ss_dssp HHHHHHHTT-TSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCC----------HHHHHHH-HHHHCSSEEEE
T ss_pred HHHHHHHHc-CCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCC----------HHHHHHH-HHHhCCCEEEE
Confidence 456777777 77789999999999999999999999999999999987321 1111111 12345899999
Q ss_pred eccc--cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC
Q 005046 151 PVHG--DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 228 (716)
Q Consensus 151 pv~G--edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKS 228 (716)
|..| ...++++...... ....++.. .+..+|+||||+- |.++.|.++++..- .+--
T Consensus 167 p~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~lvEe~i~~-~~E~sv~v~~~~~g---~~~~ 224 (403)
T 3k5i_A 167 SKTMAYDGRGNFRVNSQDD---IPEALEAL---------------KDRPLYAEKWAYF-KMELAVIVVKTKDE---VLSY 224 (403)
T ss_dssp ESSSCCTTTTEEEECSTTS---HHHHHHHT---------------TTSCEEEEECCCE-EEEEEEEEEECSSC---EEEC
T ss_pred eCCCCcCCCCEEEECCHHH---HHHHHHhc---------------CCCcEEEecCCCC-CeEEEEEEEEcCCC---EEEe
Confidence 9876 3344444332211 12222211 2567999999963 78999999875321 1122
Q ss_pred CCCCCceeecCCCCceeeeee-CCHHH----HHHHHHHHHHhcCc-eeeEeEEeeCC-CcEEEeccCcc
Q 005046 229 PVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCDVNGWS 290 (716)
Q Consensus 229 Pv~DG~vrrN~~gke~r~pv~-Lt~eE----k~iA~ka~kafgq~-VcGfDLLRs~g-~syV~DVNgwS 290 (716)
|+. ..+.++-.-.+.-.|.. |+++. +++|.++++++|.. +++||++.+.+ .+||+|||-=.
T Consensus 225 p~~-~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~ 292 (403)
T 3k5i_A 225 PTV-ETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRI 292 (403)
T ss_dssp CCE-EEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSC
T ss_pred CCe-eeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCC
Confidence 311 11111111112234666 77755 47899999999985 88999998854 59999999653
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.3e-12 Score=134.95 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=131.8
Q ss_pred cCeeeccccCCCcH-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 57 CDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
+|.+|+. ...|+ ..+.+.++..+..++ ++..+..+++||..+.++|+++|||+|++..+... + +..+
T Consensus 68 id~vv~g--~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~---~------ea~~ 136 (431)
T 3mjf_A 68 IGLTIVG--PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDV---E------AALA 136 (431)
T ss_dssp EEEEEEC--SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCH---H------HHHH
T ss_pred cCEEEEC--CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCH---H------HHHH
Confidence 5666653 23344 346677778886665 99999999999999999999999999999888732 1 1112
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
++. .++.|+|+||..|. ..++++...... ....++.+-.. ..|. ..+..+|+||||+ |.++.|
T Consensus 137 ~~~----~~g~PvVvKp~~~~gg~GV~iv~~~~e---l~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv 200 (431)
T 3mjf_A 137 YVR----QKGAPIVIKADGLAAGKGVIVAMTQEE---AETAVNDMLAG-NAFG------DAGHRIVVEEFLD--GEEASF 200 (431)
T ss_dssp HHH----HHCSSEEEEESSSCTTCSEEEECSHHH---HHHHHHHHHTT-HHHH------CCCCCEEEEECCC--SEEEEE
T ss_pred HHH----HcCCeEEEEECCCCCCCcEEEeCCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEEeeC--CcEEEE
Confidence 222 24589999999875 223322221110 11122221100 0010 1245799999999 788888
Q ss_pred EEE--CCceeEE-E-eecCCCCCCceeecCCCCceeeeee-CCHHHHHHHH--------HHHHHhcCce---eeEeEEee
Q 005046 214 YTV--GPEYAHA-E-ARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQMAR--------EVCIAFRQAV---CGFDLLRC 277 (716)
Q Consensus 214 ytV--G~~~vhA-e-~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk~iA~--------ka~kafgq~V---cGfDLLRs 277 (716)
.++ |..++.. + .+..++.+|+..-|+-|-+.-.|.. |+++..+-+. ++.+++|..+ +.+|++.+
T Consensus 201 ~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~ 280 (431)
T 3mjf_A 201 IVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMIS 280 (431)
T ss_dssp EEEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEC
T ss_pred EEEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEe
Confidence 777 4344331 1 1223335776666777777777887 8987765544 4457778755 45999999
Q ss_pred CCC-cEEEeccCc
Q 005046 278 EGR-SYVCDVNGW 289 (716)
Q Consensus 278 ~g~-syV~DVNgw 289 (716)
.+| +||+|+|.-
T Consensus 281 ~~g~~~viEiN~R 293 (431)
T 3mjf_A 281 ADGQPKVIEFNCR 293 (431)
T ss_dssp TTSCEEEEEECGG
T ss_pred CCCCeEEEEEecC
Confidence 877 999999954
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=123.19 Aligned_cols=191 Identities=14% Similarity=0.228 Sum_probs=124.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++++-| ...+. .++++++... ++.++..+..+++||....++|+++|||+|++..+... ++.
T Consensus 73 ~~dvi~~~~-E~~~~-~~l~~l~~~~-~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~ 137 (377)
T 3orq_A 73 KCDVITYEF-ENISA-QQLKLLCEKY-NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKES------------TDI 137 (377)
T ss_dssp HCSEEEESS-TTSCH-HHHHHHHHHS-CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSS------------THH
T ss_pred hCCcceecc-cccCH-HHHHHHhhhc-CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHH
Confidence 378765433 34444 3556666654 45589999999999999999999999999999988733 121
Q ss_pred eeecCeeecCcEEEeecccc--CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 005046 136 VEVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKv 213 (716)
... ...++.|+|+||..|. .+++++...... ....++.. .++.+|+||||+- ...+.|
T Consensus 138 ~~~-~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~i~g-~~E~sv 197 (377)
T 3orq_A 138 DKA-IETLGYPFIVKTRFGGYDGKGQVLINNEKD---LQEGFKLI---------------ETSECVAEKYLNI-KKEVSL 197 (377)
T ss_dssp HHH-HHHTCSSEEEEESSSCCTTTTEEEECSTTS---HHHHHHHH---------------TTSCEEEEECCCE-EEEEEE
T ss_pred HHH-HHHcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCcEEEEccCCC-CEEEEE
Confidence 111 1124589999999873 334433322211 12222222 2377999999982 278999
Q ss_pred EEE-CC--ceeE---EEeecCCCCCCceeecCCCCceeeeeeCCH--HHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEE
Q 005046 214 YTV-GP--EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTP--NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYV 283 (716)
Q Consensus 214 ytV-G~--~~vh---Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~--eEk~iA~ka~kafgq~-VcGfDLLRs-~g~syV 283 (716)
.++ +. ++.. .+.... +|.+ .+.-.|..+++ +-+++|.++++++|.. +++||++.+ .|.+||
T Consensus 198 ~~~~~~~g~~~~~~~~e~~~~---~g~~------~~~~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v 268 (377)
T 3orq_A 198 TVTRGNNNQITFFPLQENEHR---NQIL------FKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYV 268 (377)
T ss_dssp EEEECGGGCEEECCCEEEEEE---TTEE------EEEEESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEE
T ss_pred EEEEeCCCCEEEECCEeEEEE---CCEE------EEEECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEE
Confidence 998 42 2221 111111 3332 12234555654 6678999999999996 999999998 566999
Q ss_pred EeccCcc
Q 005046 284 CDVNGWS 290 (716)
Q Consensus 284 ~DVNgwS 290 (716)
+|||--.
T Consensus 269 ~EinpR~ 275 (377)
T 3orq_A 269 NEIAPRP 275 (377)
T ss_dssp EEEESSC
T ss_pred EEeeCCc
Confidence 9999765
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-11 Score=124.74 Aligned_cols=189 Identities=12% Similarity=0.122 Sum_probs=128.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.||++++-|.. .|. .++++++..+ ++.++..+..+++||...-++|+++|||+|++..+... ++.
T Consensus 42 ~~d~it~e~e~-v~~-~~l~~l~~~~-~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~------------~e~ 106 (355)
T 3eth_A 42 QQSVITAEIER-WPE-TALTRQLARH-PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAER------------SEW 106 (355)
T ss_dssp TTSEEEESCSC-CCC-CHHHHHHHTC-TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCG------------GGH
T ss_pred cCCEEEECcCC-cCH-HHHHHHHhcC-CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCH------------HHH
Confidence 89999987753 343 4778888887 89999999999999999999999999999999888732 122
Q ss_pred eeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 005046 136 VEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvy 214 (716)
... ...++.|+|+||..| . .|-|+. +.+. .+. +++... .+ + .+|+||||+- |..|-|.
T Consensus 107 ~~~-~~~~G~P~VvKp~~~G~-----------~GkGv~-~v~~-~~~-~el~~a--~~--~-~vivEe~I~~-~~Eisv~ 165 (355)
T 3eth_A 107 PAV-FDRLGELAIVKRRTGGY-----------DGRGQW-RLRA-NET-EQLPAE--CY--G-ECIVEQGINF-SGEVSLV 165 (355)
T ss_dssp HHH-HHHHCSEEEEEESSSCC-----------TTTTEE-EEET-TCG-GGSCGG--GT--T-TEEEEECCCC-SEEEEEE
T ss_pred HHH-HHHcCCCEEEEecCCCC-----------CCCeEE-EEcC-CCH-HHHHHH--hh--C-CEEEEEccCC-CcEEEEE
Confidence 211 123559999999984 6 344543 2222 001 112211 11 1 6999999984 6778888
Q ss_pred EECC---ceeE---EEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 215 TVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 215 tVG~---~~vh---Ae~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
+++. ++++ .+..+. +|.+. +...|..|+++ -+++|.++++++|. .+++||++.+.+++||
T Consensus 166 v~~~~~G~~~~~p~~e~~~~---~g~~~------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~~~~~v 236 (355)
T 3eth_A 166 GARGFDGSTVFYPLTHNLHQ---DGILR------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQGLLI 236 (355)
T ss_dssp EEECTTSCEEECCCEEEEEE---TTEEE------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEE
T ss_pred EEEcCCCCEEEECCEEEEee---CCeEE------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEE
Confidence 8742 2221 111111 23321 12235567765 36788999999987 4999999999889999
Q ss_pred EeccCc
Q 005046 284 CDVNGW 289 (716)
Q Consensus 284 ~DVNgw 289 (716)
+|||-=
T Consensus 237 ~EinpR 242 (355)
T 3eth_A 237 NELAPR 242 (355)
T ss_dssp EEEESS
T ss_pred EEeeCC
Confidence 999964
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-12 Score=134.21 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=125.7
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e 131 (716)
.+|++++.|+. ++. ..+.+.++..+. +.-|+.++..+++||....++|+++|||+|++. .+...
T Consensus 74 ~~d~v~~~~g~-~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----------- 141 (449)
T 2w70_A 74 GAVAIHPGYGF-LSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDD----------- 141 (449)
T ss_dssp TCCEEECCSST-TTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSC-----------
T ss_pred CCCEEEECCCC-cccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCH-----------
Confidence 47999987642 121 134566666775 456799999999999999999999999999986 44311
Q ss_pred ccce-eeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeec
Q 005046 132 EEDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 203 (716)
Q Consensus 132 ~~d~-I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEF 203 (716)
++. ...- ..++.|+|+||..|. .|.|+. + +.+.. ++..-+.... .++.+|+|||
T Consensus 142 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 203 (449)
T 2w70_A 142 -MDKNRAIA-KRIGYPVIIKASGGG-----------GGRGMR-V---VRGDA-ELAQSISMTRAEAKAAFSNDMVYMEKY 203 (449)
T ss_dssp -HHHHHHHH-HHHCSSEEEEETTCC-----------TTTTCE-E---ECSHH-HHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHHHHHH-HHhCCcEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 122 1110 124589999999985 333432 1 11111 1110000110 1568999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeE
Q 005046 204 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (716)
Q Consensus 204 i~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~kafgq~-VcGfDL 274 (716)
|+- +.++.|.+++ +++++...|..+. .++-..-....|.. |+++ -+++|.++++++|.. +++||+
T Consensus 204 i~g-~~e~~v~~~~~~~G~~~~~~~~~~~~-----~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 277 (449)
T 2w70_A 204 LEN-PRHVEIQVLADGQGNAIYLAERDCSM-----QRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEF 277 (449)
T ss_dssp CSS-CEEEEEEEEECTTSCEEEEEEEEEEE-----EETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cCC-CeEEEEEEEEcCCCCEEEEeceeccc-----ccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 974 4788888776 4567666654321 11100001113443 6654 467899999999975 789999
Q ss_pred EeeCCCcEEEeccCc
Q 005046 275 LRCEGRSYVCDVNGW 289 (716)
Q Consensus 275 LRs~g~syV~DVNgw 289 (716)
+.+.+++||+|||.-
T Consensus 278 ~~~~~~~~viEiN~R 292 (449)
T 2w70_A 278 LFENGEFYFIEMNTR 292 (449)
T ss_dssp EEETTEEEEEEEECS
T ss_pred EEECCCEEEEEEECC
Confidence 999888999999974
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=125.41 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=109.6
Q ss_pred cCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCcccee
Q 005046 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (716)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I 136 (716)
+|++++.. ...++ .+++.++..+...+|+..+..+++||....++|+++|||+|++ +. + .++
T Consensus 63 ~d~i~~~~-e~~~~-~~~~~le~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~-~-----------~~~-- 124 (334)
T 2r85_A 63 NAVVVPTG-SFVAH-LGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEV--YE-D-----------PDD-- 124 (334)
T ss_dssp TEEECCCT-THHHH-HCHHHHHTCCSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CS-C-----------GGG--
T ss_pred CCEEEECc-chhhh-hHHHHHHHcCCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cC-C-----------hHH--
Confidence 36665432 21122 2344556777667899999999999999999999999999998 32 1 111
Q ss_pred eecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce-----
Q 005046 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD----- 210 (716)
Q Consensus 137 ~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D----- 210 (716)
+..|+|+||..|. ..+|++..... -....++...+.. .| .....+|+||||+-.--+
T Consensus 125 ------l~~P~vvKP~~g~~s~Gv~~v~~~~---el~~~~~~~~~~~-~~-------~~~~~~lvee~i~G~e~~~~~~~ 187 (334)
T 2r85_A 125 ------IEKPVIVKPHGAKGGKGYFLAKDPE---DFWRKAEKFLGIK-RK-------EDLKNIQIQEYVLGVPVYPHYFY 187 (334)
T ss_dssp ------CCSCEEEEECC----TTCEEESSHH---HHHHHHHHHHCCC-SG-------GGCCSEEEEECCCCEEEEEEEEE
T ss_pred ------cCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhhc-cc-------CCCCcEEEEeccCCceeEEEEee
Confidence 2389999999985 22332222111 1111222211000 01 123679999999852112
Q ss_pred ------eEEEEECCceeEEEeecCCCCCCcee--------ecCCCCceee---eeeCC----HHHHHHHHHHHHHhc---
Q 005046 211 ------VKVYTVGPEYAHAEARKSPVVDGVVM--------RNPDGKEVRY---PVLLT----PNEKQMAREVCIAFR--- 266 (716)
Q Consensus 211 ------IKvytVG~~~vhAe~RKSPv~DG~vr--------rN~~gke~r~---pv~Lt----~eEk~iA~ka~kafg--- 266 (716)
+.++++++++... .+|.++ .|........ |..|+ ++-+++|.++++++|
T Consensus 188 ~~~~~~v~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~ 260 (334)
T 2r85_A 188 SKVREELELMSIDRRYESN-------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELM 260 (334)
T ss_dssp ETTTTEEEEEEEEEEEEEE-------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred cCcCceeeeeeeccEEEec-------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333211 012111 0100001111 66666 677889999999996
Q ss_pred ---CceeeEeEEeeC-CCcEEEeccC
Q 005046 267 ---QAVCGFDLLRCE-GRSYVCDVNG 288 (716)
Q Consensus 267 ---q~VcGfDLLRs~-g~syV~DVNg 288 (716)
..++++|++.+. |++||+|||.
T Consensus 261 ~~~~G~~~vd~~~~~~g~~~viEiN~ 286 (334)
T 2r85_A 261 GGLWGPFCLEGVFTPDLEFVVFEISA 286 (334)
T ss_dssp SCCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred ccccccEEEEEEECCCCCEEEEEEeC
Confidence 668999999885 6799999995
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=131.62 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=124.7
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++-|+.-.-.....+.++..+..+ -|+.++..+++||....++|+++|||+|++. .+.. .
T Consensus 78 ~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~------------~ 145 (446)
T 3ouz_A 78 EADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAG------------A 145 (446)
T ss_dssp TCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCS------------H
T ss_pred CcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCC------------H
Confidence 47899987642211134556666777554 4999999999999999999999999999986 3331 1
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeeccC
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEFi~ 205 (716)
++.... -..++.|+|+||..|. .|.|+. +++ +.. ++..-....+ .++.+|+||||+
T Consensus 146 ~e~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i~ 208 (446)
T 3ouz_A 146 EAAKKL-AKEIGYPVILKAAAGG-----------GGRGMR-VVE---NEK-DLEKAYWSAESEAMTAFGDGTMYMEKYIQ 208 (446)
T ss_dssp HHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-EEC---SGG-GHHHHHHHHHHHHHHHHSCCCEEEEECCS
T ss_pred HHHHHH-HHHhCCCEEEEECCCC-----------CCCCEE-EEC---CHH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 222211 1124599999999986 344443 222 111 1110000111 167899999998
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceee-cCCCCceeeee-eCCHH----HHHHHHHHHHHhcC-ceeeEeEE
Q 005046 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMR-NPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (716)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrr-N~~gke~r~pv-~Lt~e----Ek~iA~ka~kafgq-~VcGfDLL 275 (716)
- +.++.|.+++. .+++.-.|... +.+ +....+ ..|. .|+++ -.++|.++++++|. .+++||++
T Consensus 209 g-~~e~~v~v~~d~~g~~~~~~~~~~~-----~~~~~~~~~~-~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~ 281 (446)
T 3ouz_A 209 N-PRHIEVQVIGDSFGNVIHVGERDCS-----MQRRHQKLIE-ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFL 281 (446)
T ss_dssp S-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEE-EESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred C-CcEEEEEEEEcCCCCEEEEeeceee-----eeecCceEEE-ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 5 36888888753 45665544321 111 111111 2244 46664 44689999999997 56789999
Q ss_pred eeC-CCcEEEeccCc
Q 005046 276 RCE-GRSYVCDVNGW 289 (716)
Q Consensus 276 Rs~-g~syV~DVNgw 289 (716)
.+. |++||+|||.-
T Consensus 282 ~~~~g~~~~iEiNpR 296 (446)
T 3ouz_A 282 VDKNLDFYFIEMNTR 296 (446)
T ss_dssp ECTTCCEEEEEEESS
T ss_pred EeCCCCEEEEEeECC
Confidence 987 48999999964
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=131.60 Aligned_cols=197 Identities=17% Similarity=0.268 Sum_probs=123.9
Q ss_pred CcCeeeccccCCCcH-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e 131 (716)
.+|++++.|+. ++. ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++. .+...
T Consensus 73 ~~d~v~~~~g~-~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----------- 140 (451)
T 1ulz_A 73 GADAIHPGYGF-LAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSL----------- 140 (451)
T ss_dssp TCCEEECCSST-TTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCH-----------
T ss_pred CCCEEEECCCc-cccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH-----------
Confidence 47899887642 111 134556667775 455899999999999999999999999999986 34311
Q ss_pred ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeecc
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEFi 204 (716)
++....- ..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+||||
T Consensus 141 -~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 1ulz_A 141 -EEAKALA-REIGYPVLLKATAGG-----------GGRGIR-ICR---NEE-ELVKNYEQASREAEKAFGRGDLLLEKFI 202 (451)
T ss_dssp -HHHHHHH-HHHCSSEEEEECSSS-----------SCCSCE-EES---SHH-HHHHHHHHHHHHHHHTTSCCCEEEEECC
T ss_pred -HHHHHHH-HHcCCCEEEEECCCC-----------CCccEE-EeC---CHH-HHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 1222110 124589999999986 333442 111 110 0100000000 15689999999
Q ss_pred CCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeE
Q 005046 205 PTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (716)
Q Consensus 205 ~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gk-e~r~pv~-Lt~e----Ek~iA~ka~kafgq~-VcGfDL 274 (716)
+- ++++.|.+++ +++++...|..+ +.++ |.+ ....|.. |+++ -+++|.++++++|.. +++||+
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 275 (451)
T 1ulz_A 203 EN-PKHIEYQVLGDKHGNVIHLGERDCS-----IQRR-NQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEF 275 (451)
T ss_dssp CS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cC-CeEEEEEEEEcCCCCEEEEeeeecc-----cccc-cccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 74 4788888886 356666655432 1121 111 1112443 6653 467899999999976 788999
Q ss_pred EeeCC-CcEEEeccCc
Q 005046 275 LRCEG-RSYVCDVNGW 289 (716)
Q Consensus 275 LRs~g-~syV~DVNgw 289 (716)
+.+.+ .+||+|||.-
T Consensus 276 ~~~~~g~~~viEiN~R 291 (451)
T 1ulz_A 276 IADQEGNLYFIEMNTR 291 (451)
T ss_dssp EECTTCCEEEEEEECS
T ss_pred EEeCCCCEEEEEeeCC
Confidence 99854 5999999974
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=129.45 Aligned_cols=201 Identities=14% Similarity=0.180 Sum_probs=124.2
Q ss_pred CCcCeeeccccCCCcHHHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccC
Q 005046 55 PICDCLIAFYSSGYPLEKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (716)
Q Consensus 55 P~~D~lIsf~s~gfpl~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e 131 (716)
-.+|++++.|+.-.-...+.+.++..+.. .-++..+..+++||..+.++|+++|||+|++. .+..
T Consensus 72 ~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~------------ 139 (451)
T 2vpq_A 72 TGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKD------------ 139 (451)
T ss_dssp TTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSC------------
T ss_pred cCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCC------------
Confidence 35899999865211012345666677754 55689999999999999999999999998865 4431
Q ss_pred ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeecc
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEFi 204 (716)
.++.... -..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+||||
T Consensus 140 ~~~~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 2vpq_A 140 VSEAKKI-AKKIGYPVIIKATAGG-----------GGKGIR-VAR---DEK-ELETGFRMTEQEAQTAFGNGGLYMEKFI 202 (451)
T ss_dssp HHHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-EES---SHH-HHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHH-HHhcCCcEEEEECCCC-----------CCCCEE-EeC---CHH-HHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 1122211 0124589999999986 333432 111 110 1110000000 25789999999
Q ss_pred CCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeEE
Q 005046 205 PTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDLL 275 (716)
Q Consensus 205 ~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~kafgq~-VcGfDLL 275 (716)
+- +.++.|-+++ +++++...|..+ +.++...-....|.. |+++ -+++|.++++++|.. ++++|++
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 276 (451)
T 2vpq_A 203 EN-FRHIEIQIVGDSYGNVIHLGERDCT-----IQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFI 276 (451)
T ss_dssp CS-EEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CC-CeEEEEEEEEcCCCCEEEEeccccc-----hhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 74 3688887775 356665544332 111111111123554 7764 467899999999976 6789999
Q ss_pred ee-C-CCcEEEeccCcc
Q 005046 276 RC-E-GRSYVCDVNGWS 290 (716)
Q Consensus 276 Rs-~-g~syV~DVNgwS 290 (716)
.+ . |++||+|||.-.
T Consensus 277 ~~~~~g~~~viEiN~R~ 293 (451)
T 2vpq_A 277 YDLNDNKFYFMEMNTRI 293 (451)
T ss_dssp EETTTTEEEEEEEECSC
T ss_pred EECCCCCEEEEEeeCCC
Confidence 98 5 459999999743
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=131.52 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=124.8
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~ 130 (716)
.+|++++-+ ||.. ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++. .+..
T Consensus 79 ~id~v~~~~--g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------- 145 (461)
T 2dzd_A 79 DVDAIHPGY--GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDG----------- 145 (461)
T ss_dssp TCCEEECCS--SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSS-----------
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 478999876 3321 134455666675 566999999999999999999999999999986 3431
Q ss_pred CccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeec
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 203 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEF 203 (716)
.++....- ..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+|||
T Consensus 146 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 207 (461)
T 2dzd_A 146 -LEDVVAFA-EAHGYPIIIKAALGG-----------GGRGMR-IVR---SKS-EVKEAFERAKSEAKAAFGSDEVYVEKL 207 (461)
T ss_dssp -HHHHHHHH-HHHCSCEEEEESTTC-----------SSSSEE-EEC---CGG-GHHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred -HHHHHHHH-HhcCCcEEEEeCCCC-----------CCCCEE-EeC---CHH-HHHHHHHHHHHHHHhhcCCCcEEEEEC
Confidence 12222110 124589999999985 333432 111 111 1110000000 1467999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCcee-eEeE
Q 005046 204 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVC-GFDL 274 (716)
Q Consensus 204 i~~~G~DIKvytVG---~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~kafgq~Vc-GfDL 274 (716)
|+- ++++.|-+++ +.+++...|..++ .+++..-.+. .|. .|++ +-+++|.++++++|..-+ ++|+
T Consensus 208 i~g-~~e~~v~v~~~~~G~~~~~~~~~~~~----~~~~~~~~~~-~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~ 281 (461)
T 2dzd_A 208 IEN-PKHIEVQILGDYEGNIVHLYERDCSV----QRRHQKVVEV-APSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEF 281 (461)
T ss_dssp CCS-CEEEEEEEEECTTCCEEEEEEEEEEE----EETTEEEEEE-ESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCC-CeEEEEEEEEcCCCCEEEEEeccccc----cccccceEEE-CCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 974 4778887775 3467666664321 1211111111 233 4665 356799999999999754 5999
Q ss_pred EeeCCCcEEEeccCcc
Q 005046 275 LRCEGRSYVCDVNGWS 290 (716)
Q Consensus 275 LRs~g~syV~DVNgwS 290 (716)
+.+.+++||+|||.-.
T Consensus 282 ~~~~~~~~viEiN~R~ 297 (461)
T 2dzd_A 282 LVSGDEFYFIEVNPRI 297 (461)
T ss_dssp EEETTEEEEEEEESSC
T ss_pred EEeCCCEEEEEEECCC
Confidence 9998889999999743
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=131.87 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=101.5
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++-|+--.--....+.++..+...+ ++.++..++.||..+.++|+++|||+|++. .+. + .
T Consensus 74 ~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~-s-----------~ 141 (681)
T 3n6r_A 74 GAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIE-D-----------A 141 (681)
T ss_dssp CCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC--------------------
T ss_pred CcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcC-C-----------H
Confidence 378888876321111245566667765554 999999999999999999999999999975 332 1 1
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeeccC
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEFi~ 205 (716)
++.... -..++.|+|+||..|. .|.|++ +++....-...+. ..+ .++.+++||||+
T Consensus 142 ~e~~~~-a~~igyPvVvKp~~gg-----------ggkGv~-iv~~~~el~~a~~----~~~~ea~~~fg~~~vlvEe~I~ 204 (681)
T 3n6r_A 142 DEAVKI-SNQIGYPVMIKASAGG-----------GGKGMR-IAWNDQEAREGFQ----SSKNEAANSFGDDRIFIEKFVT 204 (681)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHHHH-HHhcCCcEEEEECCCC-----------CCCCEE-EECCHHHHHHHHH----HHHHHHHHhCCCCcEEEEeccC
Confidence 222221 1235699999999986 444553 5554332222222 111 256899999998
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHHHH----HHHHHHHHHhcCc-eeeEeEEe
Q 005046 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK----QMAREVCIAFRQA-VCGFDLLR 276 (716)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~eEk----~iA~ka~kafgq~-VcGfDLLR 276 (716)
. ++++-|-++++ ++++...|... ..+++....+. .|.. |+++.+ ++|.++++++|.. ++.||++.
T Consensus 205 g-~rei~V~v~~d~~G~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~ 278 (681)
T 3n6r_A 205 Q-PRHIEIQVLCDSHGNGIYLGERECS----IQRRNQKVVEE-APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIV 278 (681)
T ss_dssp S-CEEEEEEEECCSSSCCEEEEEEECC----CEETTEECEEE-ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEE
T ss_pred C-CcEEEEEEEEeCCCCEEEEeeeecc----eeccCccEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 6 37888888874 66777777542 12232222222 2444 787665 7899999999985 77799999
Q ss_pred eCCC-cEEEeccCcc
Q 005046 277 CEGR-SYVCDVNGWS 290 (716)
Q Consensus 277 s~g~-syV~DVNgwS 290 (716)
+.++ +|++|||-=.
T Consensus 279 d~dg~~~~lEiNpR~ 293 (681)
T 3n6r_A 279 DGQKNFYFLEMNTRL 293 (681)
T ss_dssp CTTSCCCCCEEECSC
T ss_pred eCCCCEEEEeccccc
Confidence 8655 9999999643
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=124.29 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=122.7
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccce
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~ 135 (716)
.+|+++++ +.. .+..+.+.++..+.. -++..+..++.||..+.++|+++|||+|++..+... ++.
T Consensus 102 ~id~Vip~-sE~-~l~~~a~~~e~~Gi~-g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~------------ee~ 166 (474)
T 3vmm_A 102 GADAITTN-NEL-FIAPMAKACERLGLR-GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTL------------EDF 166 (474)
T ss_dssp TCSEEEES-CGG-GHHHHHHHHHHTTCC-CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSH------------HHH
T ss_pred CCCEEEEC-Ccc-cHHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------HHH
Confidence 36888883 333 233355555666665 899999999999999999999999999999888632 122
Q ss_pred eeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCC------
Q 005046 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG------ 208 (716)
Q Consensus 136 I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G------ 208 (716)
... -..++.|+|+||..|. ..++.+-..... ....++...+....+... ..+..++.+|+||||+-.-
T Consensus 167 ~~~-~~~lg~PvVVKP~~g~gg~Gv~iv~~~ee---l~~a~~~~~~~~~~~~~~-~a~~~~~~vlVEe~I~G~e~~~~q~ 241 (474)
T 3vmm_A 167 RAA-LEEIGTPLILKPTYLASSIGVTLITDTET---AEDEFNRVNDYLKSINVP-KAVTFEAPFIAEEFLQGEYGDWYQT 241 (474)
T ss_dssp HHH-HHHSCSSEEEEESSCCTTTTCEEECCTTS---HHHHHHHHHHHHTTSCCC-TTCCCSCSEEEEECCCBCHHHHCSS
T ss_pred HHH-HHHcCCCEEEEECCCCcCceEEEECCHHH---HHHHHHHHHHHHhhcccc-ccccCCCeEEEEeCCCCceeeeeec
Confidence 211 1234599999999985 122222111110 111221111000000000 0112357899999998421
Q ss_pred ------ceeEEEEECCcee--EEEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCceee--EeE
Q 005046 209 ------TDVKVYTVGPEYA--HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQAVCG--FDL 274 (716)
Q Consensus 209 ------~DIKvytVG~~~v--hAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~kafgq~VcG--fDL 274 (716)
-.|.+++.+++.. +...|.. .+.+ . .-....|..|+++ -+++|.++++++|..-+| ||+
T Consensus 242 ~~~~~e~sv~~v~~dg~~~~v~i~~~~~---~~~~---~-~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef 314 (474)
T 3vmm_A 242 EGYSDYISIEGIMADGEYFPIAIHDKTP---QIGF---T-ETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEI 314 (474)
T ss_dssp SSSCSEEEEEEEEETTEEEEEEEEEECC---CBTT---B-CCEEEESCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred ccccceeEEEEEEECCeEEEEEEEeecc---CCCc---c-ceEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Confidence 2466677777643 2223322 1111 1 1122346677775 556889999999998777 899
Q ss_pred EeeCCC-cEEEeccC
Q 005046 275 LRCEGR-SYVCDVNG 288 (716)
Q Consensus 275 LRs~g~-syV~DVNg 288 (716)
+.+.+| +||+|||.
T Consensus 315 ~~~~dg~~~~iEvNp 329 (474)
T 3vmm_A 315 KLMKNREPGLIESAA 329 (474)
T ss_dssp EEEGGGEEEEEEEES
T ss_pred EEcCCCCEEEEEEeC
Confidence 987554 99999994
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=134.44 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=127.9
Q ss_pred CcCeeeccccCCCcHHHHHH-----HHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccc
Q 005046 56 ICDCLIAFYSSGYPLEKAES-----YATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~-----y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~ 129 (716)
.+|++++.++....+.-+++ .++..+...+ |+.++...+.||....++|+++|||+|++..+...
T Consensus 82 ~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~--------- 152 (1073)
T 1a9x_A 82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTM--------- 152 (1073)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSH---------
T ss_pred CCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCH---------
Confidence 57999988764333432221 4556776555 99999999999999999999999999999988732
Q ss_pred cCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCC
Q 005046 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 206 (716)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~ 206 (716)
++.... -..++.|+|+||..|. .|.|+. +++ |. .++..-.. ....++.+|+||||+-
T Consensus 153 ---~ea~~~-~~~ig~PvVvKp~~~~-----------Gg~Gv~-iv~---~~-eel~~~~~~~~~~~~~~~vlvEe~I~G 212 (1073)
T 1a9x_A 153 ---EEALAV-AADVGFPCIIRPSFTM-----------GGSGGG-IAY---NR-EEFEEICARGLDLSPTKELLIDESLIG 212 (1073)
T ss_dssp ---HHHHHH-HHHHCSSEEEEETTCC-----------TTTTCE-EES---SH-HHHHHHHHHHHHHCTTSCEEEEECCTT
T ss_pred ---HHHHHH-HHHcCCCEEEEECCCC-----------CCCceE-EeC---CH-HHHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 222221 1234589999999874 233332 111 11 01110000 0113568999999983
Q ss_pred CCceeEEEEECCc---ee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcCc--eeeE
Q 005046 207 GGTDVKVYTVGPE---YA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQA--VCGF 272 (716)
Q Consensus 207 ~G~DIKvytVG~~---~v--hAe~RKSPv~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~kafgq~--VcGf 272 (716)
...+.|-++++. ++ -.+.|-.| .| .|.|... .|. .||++ -+++|.++++++|.. +|+|
T Consensus 213 -~~E~~v~v~~d~~g~~v~~~~~e~~dp--~~-----v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~v 284 (1073)
T 1a9x_A 213 -WKEYEMEVVRDKNDNCIIVCSIENFDA--MG-----IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNV 284 (1073)
T ss_dssp -SEEEEEEEEECTTCCEEEEEEEEESSC--TT-----SCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred -CeEEEEEEEEeCCCCEEEEEEEecccC--Cc-----cccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEE
Confidence 268888888743 22 23445455 23 2323322 244 48874 467899999999997 9999
Q ss_pred eEEeeC--CCcEEEeccC
Q 005046 273 DLLRCE--GRSYVCDVNG 288 (716)
Q Consensus 273 DLLRs~--g~syV~DVNg 288 (716)
|++... |++||+|||-
T Consensus 285 df~~~~~~g~~~viEiNp 302 (1073)
T 1a9x_A 285 QFAVNPKNGRLIVIEMNP 302 (1073)
T ss_dssp EEEECTTTCCEEEEEEES
T ss_pred EEEEECCCCCEEEEEecC
Confidence 999984 6799999994
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.1e-11 Score=131.86 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=120.3
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEE----EecCCC--------
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL----VNREVP-------- 122 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~----~~r~~~-------- 122 (716)
.+|++++-|+.-.--....+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. +...+.
T Consensus 123 ~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~ 202 (540)
T 3glk_A 123 PVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRI 202 (540)
T ss_dssp TCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CC
T ss_pred CCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccccccccccccc
Confidence 478888765421111233445567776665 9999999999999999999999999999754 000000
Q ss_pred --cccc---ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc---c
Q 005046 123 --YQEL---DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR---R 194 (716)
Q Consensus 123 --~~~~---~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r---~ 194 (716)
+.+. ....+.++.... -..++.|+|+||..|. .|-|+ +.+.+... +..-....+ .
T Consensus 203 ~~~~~~~~~~~v~s~~ea~~~-a~~igyPvVVKp~~gg-----------GG~Gv----~iv~~~~e-L~~a~~~~~~~~~ 265 (540)
T 3glk_A 203 SVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKGI----RKAESAED-FPILFRQVQSEIP 265 (540)
T ss_dssp CCCHHHHHHTSCCSHHHHHHH-HHHHCSSEEEEETTCC---------------E----EEECSTTT-HHHHHHHHHHHST
T ss_pred ccccccccccCcCCHHHHHHH-HHhcCCcEEEEECCCC-----------CCCCE----EEECCHHH-HHHHHHHHHhhcc
Confidence 0000 001111222221 1235699999999985 22232 22322211 111000111 2
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhc
Q 005046 195 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFR 266 (716)
Q Consensus 195 ~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~kafg 266 (716)
++.+++||||+- +..+-|-++++ .+++.-.|..- ..+++..--+. .|.. |+++ -.++|.++++++|
T Consensus 266 ~~~vlVEe~I~g-~rei~V~vl~d~~G~vv~l~~rd~s----~qr~~~k~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alG 339 (540)
T 3glk_A 266 GSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVG 339 (540)
T ss_dssp TCCEEEEECCSS-EEEEEEEEEECTTSCEEEEEEEEEE----EC---CCSEEE-ESCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeceeee----eeecccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678999999953 48888888874 56776555431 11222111111 2443 4553 4578999999999
Q ss_pred C-ceeeEeEEeeC-CCcEEEeccCc
Q 005046 267 Q-AVCGFDLLRCE-GRSYVCDVNGW 289 (716)
Q Consensus 267 q-~VcGfDLLRs~-g~syV~DVNgw 289 (716)
. .+++||++.+. |.+|++|||-=
T Consensus 340 ~~G~~~VEf~~d~dg~~~~lEiNpR 364 (540)
T 3glk_A 340 YVSAGTVEYLYSQDGSFHFLELNPR 364 (540)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEECS
T ss_pred CccceEEEEEEcCCCCEEEEEEECC
Confidence 8 58889999875 55999999964
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-10 Score=131.22 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=127.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCcEEE--E--ec------CC---
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NR------EV--- 121 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIP~P~t~~--~--~r------~~--- 121 (716)
.+|++++-|+.-.--....+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + .. .+
T Consensus 139 ~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~ 218 (587)
T 3jrx_A 139 PVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRI 218 (587)
T ss_dssp TCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCC
T ss_pred CCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccccccccc
Confidence 478887776532222234455667776666 9999999999999999999999999999754 0 00 00
Q ss_pred -Ccccc---ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc---cc
Q 005046 122 -PYQEL---DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RR 194 (716)
Q Consensus 122 -~~~~~---~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~ 194 (716)
.+++. ....+.++.... -..++.|+|+||..|. .|-|++ + +.+.. ++..-.... ..
T Consensus 219 ~~~~~~~~~~~v~s~eea~~~-a~~iGyPvVVKp~~Gg-----------GGkGv~-i---V~s~e-EL~~a~~~a~~~~~ 281 (587)
T 3jrx_A 219 SVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKGIR-K---AESAE-DFPILFRQVQSEIP 281 (587)
T ss_dssp CCCHHHHHTTSCCSHHHHHHH-HHHHCSSEEEEETTCC-----------SSSSEE-E---ECSTT-THHHHHHHHHHHST
T ss_pred ccchhhccccccCCHHHHHHH-HHhcCCeEEEEeCCCC-----------CCCCeE-E---eCCHH-HHHHHHHHHHhhcc
Confidence 00000 001112222221 1245699999999985 333442 2 22211 111100011 12
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhc
Q 005046 195 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFR 266 (716)
Q Consensus 195 ~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~kafg 266 (716)
++.+++||||+- ++.+-|-++++ .+++.-.|..- ..+++..--+. .|.. |+++ -.++|.++++++|
T Consensus 282 ~~~vlVEeyI~g-~rei~V~vl~D~~G~vv~l~~rd~s----iqrr~qk~ie~-aPa~~l~~~~~~~i~~~A~~~a~alG 355 (587)
T 3jrx_A 282 GSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVG 355 (587)
T ss_dssp TCCEEEEECCCS-CEEEEEEEEECSSSCEEEEEEEEEE----EESSSCEEEEE-ESCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeecc----ccccccceeEe-cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678999999964 48888888875 56666555321 12222111111 2443 5554 4578999999999
Q ss_pred C-ceeeEeEEeeC-CCcEEEeccCcc
Q 005046 267 Q-AVCGFDLLRCE-GRSYVCDVNGWS 290 (716)
Q Consensus 267 q-~VcGfDLLRs~-g~syV~DVNgwS 290 (716)
. .+++||++.+. |.+|++|||-=.
T Consensus 356 y~G~~~VEfl~d~dG~~yflEINpRl 381 (587)
T 3jrx_A 356 YVSAGTVEYLYSQDGSFHFLELNPRL 381 (587)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEESSC
T ss_pred CcceeEEEEEEeCCCCEEEEEEeCCC
Confidence 8 58889999875 559999999643
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=130.59 Aligned_cols=200 Identities=17% Similarity=0.207 Sum_probs=98.1
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCcccccccc
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~ 130 (716)
.+|++++-|+ |.. ..+.+.++..+. |+-++.++..+++||..+.++|+++|||+|++. .+..
T Consensus 93 ~iD~V~pg~g--~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s----------- 159 (1165)
T 2qf7_A 93 GADAIHPGYG--LLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDD----------- 159 (1165)
T ss_dssp TCSEEECCSS--TTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--------------------
T ss_pred CCCEEEECCC--chhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCC-----------
Confidence 4788888663 221 234555666665 556899999999999999999999999999987 3431
Q ss_pred CccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc---cCcceEEeeccCCC
Q 005046 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR---REGSYIYEEFMPTG 207 (716)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r---~~gsyIyQEFi~~~ 207 (716)
.++.... -..++.|+|+||..|. .|-|+. +.+........+..-....+ .++.+++||||+.
T Consensus 160 -~eea~~~-a~~igyPvVVKp~~g~-----------GG~Gv~-iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g- 224 (1165)
T 2qf7_A 160 -MAEVAKM-AAAIGYPVMLKASWGG-----------GGRGMR-VIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER- 224 (1165)
T ss_dssp --------------------------------------------------------------------------CCCSS-
T ss_pred -HHHHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-
Confidence 1222221 1235699999999986 444553 44433222222221000000 2467999999974
Q ss_pred CceeEEEEECC---ceeEEEeecCCCCCCceeecCCCC-ceeeee-eCCHHH----HHHHHHHHHHhcCc-eeeEeEEee
Q 005046 208 GTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK-EVRYPV-LLTPNE----KQMAREVCIAFRQA-VCGFDLLRC 277 (716)
Q Consensus 208 G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gk-e~r~pv-~Lt~eE----k~iA~ka~kafgq~-VcGfDLLRs 277 (716)
|..+.|.++++ .+++...|.. .+.|+ +++ ....|. .|+++. .++|.++++++|.. +++||++.+
T Consensus 225 g~EisV~vl~D~~G~vv~l~~r~~-----s~~r~-~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd 298 (1165)
T 2qf7_A 225 ARHVESQILGDTHGNVVHLFERDC-----SVQRR-NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMD 298 (1165)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEE-----EEEET-TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred CcEEEEEEEEcCCCcEEEEEeecc-----cceec-ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEE
Confidence 67888888875 3666655532 22222 122 112243 477643 57999999999986 678999998
Q ss_pred -C-CCcEEEeccCc
Q 005046 278 -E-GRSYVCDVNGW 289 (716)
Q Consensus 278 -~-g~syV~DVNgw 289 (716)
. |++||+|||.-
T Consensus 299 ~~dg~~~~iEiNpR 312 (1165)
T 2qf7_A 299 ADTGKFYFIEVNPR 312 (1165)
T ss_dssp TTTTEEEEEEEECS
T ss_pred CCCCCEEEEEEEcC
Confidence 5 55999999964
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=128.92 Aligned_cols=199 Identities=15% Similarity=0.183 Sum_probs=120.1
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d 134 (716)
.+|.+|+.++.-.++ ...+.++..+.. .-|+..+..++.||.+..++|+++|||+|++..+... ++
T Consensus 634 ~~d~Vi~~~g~~~~~-~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~------------ee 700 (1073)
T 1a9x_A 634 KPKGVIVQYGGQTPL-KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAI------------EM 700 (1073)
T ss_dssp CCSEEECSSSTHHHH-TTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSH------------HH
T ss_pred CcceEEeecCCchHH-HHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCH------------HH
Confidence 468888876643343 444555667754 4499999999999999999999999999999988622 22
Q ss_pred eeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 005046 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (716)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-G~DIK 212 (716)
....- ..++.|+|+||..|. ..++.|-+.... ....++... ....+..+|+||||+.. --+|-
T Consensus 701 a~~~~-~~ig~PvvVKP~~~~gG~Gv~iv~~~~e---l~~~~~~a~-----------~~~~~~~vlvEefI~g~~E~~V~ 765 (1073)
T 1a9x_A 701 AVEKA-KEIGYPLVVRASYVLGGRAMEIVYDEAD---LRRYFQTAV-----------SVSNDAPVLLDHFLDDAVEVDVD 765 (1073)
T ss_dssp HHHHH-HHHCSSEEEEC-------CEEEECSHHH---HHHHHHHCC-------------------EEEBCCTTCEEEEEE
T ss_pred HHHHH-HHcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------hhCCCCcEEEEEccCCCcEEEEE
Confidence 22211 124599999999874 222332222110 111111110 11135679999999753 44555
Q ss_pred EEEECCc-eeEEEeecCCCCCCceeecCCCCceee--ee-eCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEE
Q 005046 213 VYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRY--PV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (716)
Q Consensus 213 vytVG~~-~vhAe~RKSPv~DG~vrrN~~gke~r~--pv-~Lt~----eEk~iA~ka~kafgq-~VcGfDLLRs~g~syV 283 (716)
++.-|.. ++.+..+.- .+.+.|-|+... |. .|++ +-+++|.++++++|. .++++|++...+++||
T Consensus 766 ~l~d~~~v~~~~i~e~~------~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~~~~~v 839 (1073)
T 1a9x_A 766 AICDGEMVLIGGIMEHI------EQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYL 839 (1073)
T ss_dssp EEECSSCEEEEEEEEES------SCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCEEE
T ss_pred EEEECCeEEEEeeEEEE------eccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCeEEE
Confidence 5554543 344443321 122445444333 32 5665 567799999999999 8999999998889999
Q ss_pred EeccC
Q 005046 284 CDVNG 288 (716)
Q Consensus 284 ~DVNg 288 (716)
+|||-
T Consensus 840 iEvNp 844 (1073)
T 1a9x_A 840 IEVNP 844 (1073)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99994
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-10 Score=127.69 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=120.8
Q ss_pred CcCeeeccccC--CCcHHHHHHHHHhcC---CcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEE-----ecCC----
Q 005046 56 ICDCLIAFYSS--GYPLEKAESYATLRK---PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-----NREV---- 121 (716)
Q Consensus 56 ~~D~lIsf~s~--gfpl~kai~y~~lr~---p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~-----~r~~---- 121 (716)
.+|++++.++. -.+. ....++..+ ++.-++..+..+++||..+.++|+++|||+|++..+ ..+.
T Consensus 130 ~id~Vi~g~G~~sE~~~--~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l 207 (554)
T 1w96_A 130 DVDAVWAGWGHASENPL--LPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGL 207 (554)
T ss_dssp TCSEEECCSSTTTTCTH--HHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCC
T ss_pred CCCEEEECCCccccCHH--HHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccc
Confidence 37999987632 1222 222344554 567788889999999999999999999999997543 0000
Q ss_pred --Ccccc---ccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccccc---c
Q 005046 122 --PYQEL---DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---R 193 (716)
Q Consensus 122 --~~~~~---~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r 193 (716)
.+... ....+.++.... -..++.|+|+||..|. .|-|+. + +.+.. ++..-+... .
T Consensus 208 ~~ip~~~~~~~~~~~~~e~~~~-~~~~g~PvVvKp~~g~-----------gg~Gv~-~---v~~~~-el~~a~~~~~~~~ 270 (554)
T 1w96_A 208 VSVDDDIYQKGCCTSPEDGLQK-AKRIGFPVMIKASEGG-----------GGKGIR-Q---VEREE-DFIALYHQAANEI 270 (554)
T ss_dssp EECCHHHHGGGSCSSHHHHHHH-HHHHCSSEEEEETTCC-----------TTTTEE-E---ECSHH-HHHHHHHHHHHHS
T ss_pred cccccccccccCCCCHHHHHHH-HHHcCCCEEEEECCCC-----------CCceEE-E---ECCHH-HHHHHHHHHHhhc
Confidence 00000 000011222221 1134589999999985 333432 1 11111 111000001 1
Q ss_pred cCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCce-eeeee-CCH----HHHHHHHHHHHH
Q 005046 194 REGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPVL-LTP----NEKQMAREVCIA 264 (716)
Q Consensus 194 ~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~-r~pv~-Lt~----eEk~iA~ka~ka 264 (716)
.++.+|+||||+. |..+-|.++++ ++++...|...+.+ + |.+-+ -.|.. +++ +-+++|.+++++
T Consensus 271 ~~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~~~~~~~----~--~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~a 343 (554)
T 1w96_A 271 PGSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGRDCSVQR----R--HQKIIEEAPVTIAKAETFHEMEKAAVRLGKL 343 (554)
T ss_dssp TTCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEEEEEE----T--TEEEEEEESCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeeeeeEe----e--ccceeeeCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2578999999984 57888877764 45554444221111 1 01100 12333 554 457789999999
Q ss_pred hcC-ceeeEeEEee-C-CCcEEEeccC
Q 005046 265 FRQ-AVCGFDLLRC-E-GRSYVCDVNG 288 (716)
Q Consensus 265 fgq-~VcGfDLLRs-~-g~syV~DVNg 288 (716)
+|. .+++||++.+ . |++||+|||.
T Consensus 344 lg~~G~~~ve~~~~~~dg~~~~iEiN~ 370 (554)
T 1w96_A 344 VGYVSAGTVEYLYSHDDGKFYFLELNP 370 (554)
T ss_dssp HTCCEEEEEEEEECTTTCCEEEEEEEC
T ss_pred cCCcceEEEEEEEECCCCCEEEEEeeC
Confidence 998 7999999986 4 6799999996
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=129.39 Aligned_cols=200 Identities=15% Similarity=0.190 Sum_probs=94.4
Q ss_pred CcCeeeccccCCCcH--HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCcE-EEEecCCCccccccccC
Q 005046 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRY-ALVNREVPYQELDYFIE 131 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t-~~~~r~~~~~~~~~~~e 131 (716)
.+|++++-| ||-. ..+.+.++..+... -++.++..+++||..+.++|+++|||+|+. ..+. +
T Consensus 103 ~iDaI~pg~--g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~-s----------- 168 (1236)
T 3va7_A 103 GAQAIIPGY--GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIK-D----------- 168 (1236)
T ss_dssp TCSEEECCS--SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-------------------
T ss_pred CCCEEEECC--ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecC-C-----------
Confidence 389999977 4322 23455666666554 499999999999999999999999999884 3333 1
Q ss_pred ccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc---ccccCcceEEeeccCCCC
Q 005046 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (716)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyQEFi~~~G 208 (716)
.++.... -..++.|+|+||..|. .|-|+. +++........++.-.. ....++.+|+||||+- +
T Consensus 169 ~eea~~~-a~~iGyPvVVKP~~Gg-----------GGkGV~-iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~ 234 (1236)
T 3va7_A 169 AKEAKEV-AKKLEYPVMVKSTAGG-----------GGIGLQ-KVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-A 234 (1236)
T ss_dssp -----------------------------------------------------------------------------C-C
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-C
Confidence 1222221 1235699999999986 455654 55443322222221000 0013567999999975 5
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeC-
Q 005046 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE- 278 (716)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN~~gke~r~pv-~Lt~e----Ek~iA~ka~kafgq~-VcGfDLLRs~- 278 (716)
..+-|.++++ .+++.-.|..- ..+++..-.+. .|. .|+++ -.++|.++++++|.. +++||++.+.
T Consensus 235 rEisV~vl~Dg~g~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d 309 (1236)
T 3va7_A 235 RHVEIQMMGDGFGKAIAIGERDCS----LQRRNQKVIEE-TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQ 309 (1236)
T ss_dssp EEEEEEEEEESSSCEEEEEEEEEE----EEETTEEEEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETT
T ss_pred eEEEEEEEecCCceEEEEeeeeee----eeecCcceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC
Confidence 7888888864 45665555321 11112111111 244 36664 357889999999995 9999999985
Q ss_pred -CCcEEEeccC
Q 005046 279 -GRSYVCDVNG 288 (716)
Q Consensus 279 -g~syV~DVNg 288 (716)
+++||+|||-
T Consensus 310 ~g~~y~iEINp 320 (1236)
T 3va7_A 310 RDEFYFLEVNA 320 (1236)
T ss_dssp TTEEEEEEEEC
T ss_pred CCcEEEEEEEC
Confidence 6899999996
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=129.95 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=120.6
Q ss_pred CcCeeeccccCCCcHHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCc
Q 005046 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (716)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~ 132 (716)
.+|++++-|+.-.-.....+.++..+. |.-++.++..+++||..+.++|+++|||+|++. .+... + +.
T Consensus 77 ~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~---e------ea 147 (1150)
T 3hbl_A 77 NVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---E------LA 147 (1150)
T ss_dssp TCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSS---S------TT
T ss_pred CCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCH---H------HH
Confidence 478999876531111234555667775 445999999999999999999999999999987 33311 0 11
Q ss_pred cceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccc-------cCcceEEeeccC
Q 005046 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (716)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyQEFi~ 205 (716)
.... ..++.|+|+||..|. .|-|+ +.+.+... +..-....+ .++.+++||||+
T Consensus 148 ~~~a----~~iGyPvVVKP~~Gg-----------Gg~Gv----~vv~s~ee-L~~a~~~a~~~a~~~fg~~~vlVEeyI~ 207 (1150)
T 3hbl_A 148 KEFA----EEAGFPLMIKATSGG-----------GGKGM----RIVREESE-LEDAFHRAKSEAEKSFGNSEVYIERYID 207 (1150)
T ss_dssp TTTG----GGTCSSEEEECCC----------------------CEECCSSS-CTHHHHSSSSSCC------CBEEECCCS
T ss_pred HHHH----HHcCCCEEEEeCCCC-----------CCCCE----EEECCHHH-HHHHHHHHHHHHHhhcCCCcEEEEEccC
Confidence 1112 234599999999885 33333 23333221 111111111 157899999997
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceeec-CCCCceeeee-eCCHH----HHHHHHHHHHHhcCc-eeeEeEE
Q 005046 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRN-PDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLL 275 (716)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RKSPv~DG~vrrN-~~gke~r~pv-~Lt~e----Ek~iA~ka~kafgq~-VcGfDLL 275 (716)
- .+.+-|-++|+ .++|...|... +.++ ....+. .|. .|+++ -.++|.++++++|.. ++.||++
T Consensus 208 G-~reieV~vl~d~~G~vv~l~er~~s-----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEfl 280 (1150)
T 3hbl_A 208 N-PKHIEVQVIGDEHGNIVHLFERDCS-----VQRRHQKVVEV-APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFL 280 (1150)
T ss_dssp S-CEEEEEEEEECSSSCEEEEEEEEEE-----EESSSCEEEEE-SSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred C-CcEEEEEEEEeCCCCEEEEEeeccc-----eeccCceeEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 4 36777777754 56776666432 2221 111122 233 46664 457899999999964 5669999
Q ss_pred eeCCCcEEEeccCc
Q 005046 276 RCEGRSYVCDVNGW 289 (716)
Q Consensus 276 Rs~g~syV~DVNgw 289 (716)
.+.+++|++|||-=
T Consensus 281 vd~d~~y~iEINpR 294 (1150)
T 3hbl_A 281 VSGDEFFFIEVNPR 294 (1150)
T ss_dssp EETTEEEEEEEECS
T ss_pred EECCeEEEEEEeCC
Confidence 98889999999964
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.3e-07 Score=95.00 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=90.2
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCc
Q 005046 78 TLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (716)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedH 157 (716)
+..+..+.-+..+.....||..-.+.|+++|||+|++. . + + |. .++.|+|+||..|.
T Consensus 80 e~~~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~--~-~---e---------e~------~i~~PviVKp~~g~-- 136 (320)
T 2pbz_A 80 EKAKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVV--E-P---E---------DA------KPDELYFVRIEGPR-- 136 (320)
T ss_dssp HTCCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBC--C-S---C---------CC------CSSCCEEEECC-----
T ss_pred HHcCCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCee--C-H---h---------Hc------CcCCcEEEEECCCC--
Confidence 45555566777888899999888899999999999986 1 1 1 11 25699999999996
Q ss_pred ceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE--CCceeEEEeecCCCCCCc
Q 005046 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV--GPEYAHAEARKSPVVDGV 234 (716)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIKvytV--G~~~vhAe~RKSPv~DG~ 234 (716)
.|-|.. +.+ | .++....... .+.+|+||||+. .......|-+ |.-.+-...++--..||.
T Consensus 137 ---------ggkG~~-~v~---~--eel~~~~~~~--~~~~IiEEfI~g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~ 199 (320)
T 2pbz_A 137 ---------GGSGHF-IVE---G--SELEERLSTL--EEPYRVERFIPGVYLYVHFFYSPILERLELLGVDERVLIADGN 199 (320)
T ss_dssp ----------------------C--EECSCCCC------CCEEEECCCSCEEEEEEEEETTTTEEEEEEEEEEEETTCSS
T ss_pred ---------CCCCEE-EEC---h--HHHHHHHHhc--CCCEEEEeeeceEecceeEEeccccCceeEEEecceEEEECCe
Confidence 344543 333 3 2333211011 267999999984 2111111110 000000011110003555
Q ss_pred eee-cCCCCcee---eeeeCC----HHHHHHHHHHHHHhc-------CceeeEeEEeeCCCcEEEeccC
Q 005046 235 VMR-NPDGKEVR---YPVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 235 vrr-N~~gke~r---~pv~Lt----~eEk~iA~ka~kafg-------q~VcGfDLLRs~g~syV~DVNg 288 (716)
.+- +...--+- .|..++ ++-.++|.+++++++ ..+.++| +...++.||+|||.
T Consensus 200 ~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~~~dg~~~v~EIap 267 (320)
T 2pbz_A 200 ARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-FAYDGSFKAIGIAS 267 (320)
T ss_dssp SSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-EECSSSCEEEEEES
T ss_pred eecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-EcCCCcEEEEEecC
Confidence 433 11100000 155544 567789999999983 4566889 65557899999985
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-06 Score=88.84 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=93.6
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-Cc
Q 005046 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DH 157 (716)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dH 157 (716)
..+..+.-+-.+..+..||....+.|+++|||||++ +. + .++. ..|+|+||..+. .+
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~-~-----------~~e~--------~~PvVVK~~~~a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKK--YE-S-----------PEDI--------DGTVIVKFPGARGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCE--ES-S-----------GGGC--------CSCEEEECSCCCC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCE--eC-C-----------HHHc--------CCCEEEeeCCCCCCC
Confidence 556555556677777888988889999999999976 22 1 1111 279999999875 23
Q ss_pred ceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE-CCc-eeEEEeec--CCCCC
Q 005046 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV-GPE-YAHAEARK--SPVVD 232 (716)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIKvytV-G~~-~vhAe~RK--SPv~D 232 (716)
+++|--.... ....++..-.. ..+.. ..+..+|.||||.. .......|-+ +++ .+-.+.++ +. .|
T Consensus 165 Gv~v~~s~ee---~~~a~~~~~~~-~~~~~-----~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~-~d 234 (361)
T 2r7k_A 165 GYFIASSTEE---FYKKAEDLKKR-GILTD-----EDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN-ID 234 (361)
T ss_dssp -EEEESSHHH---HHHHHHHHHHT-TSCCH-----HHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEE-HH
T ss_pred CEEEECCHHH---HHHHHHHHHhc-ccccc-----CCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEee-cc
Confidence 3333322111 11111111000 00000 11246999999984 1111112221 110 01111111 10 12
Q ss_pred Ccee----ec-CCCCceee------eeeCC----HHHHHHHHHHHHHhc-------CceeeEeEEeeCC-CcEEEeccC
Q 005046 233 GVVM----RN-PDGKEVRY------PVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCEG-RSYVCDVNG 288 (716)
Q Consensus 233 G~vr----rN-~~gke~r~------pv~Lt----~eEk~iA~ka~kafg-------q~VcGfDLLRs~g-~syV~DVNg 288 (716)
|..+ .. ..+.+..+ |..|+ ++-.++|.++++++| -.+.++++.-+.+ +.||+|||.
T Consensus 235 gi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIap 313 (361)
T 2r7k_A 235 GLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSA 313 (361)
T ss_dssp HHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEES
T ss_pred cceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcC
Confidence 2221 00 01111112 66665 567789999999984 6677899987764 589999985
|
| >1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.1e-06 Score=84.75 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=44.3
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
|+||.. +||+.||+ - |+ +|| ...| ..++.|+||+-.|+.+||++|+.||..-.|
T Consensus 36 g~LT~~G~~q~~~lG~~lr~-r---------Y~----~ll--~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~p~~~ 96 (354)
T 1nd6_A 36 GQLTQLGMEQHYELGEYIRK-R---------YR----KFL--NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG 96 (354)
T ss_dssp TCBCHHHHHHHHHHHHHHHH-H---------TT----TTT--CSSCCGGGEEEEEESCHHHHHHHHHHHHHHSCCCG
T ss_pred chhHHHHHHHHHHHHHHHHH-H---------HH----HHh--ccccCcCeEEEEECCchHHHHHHHHHHHhcCCCCC
Confidence 899987 99999999 5 75 344 3444 357999999999999999999999996543
|
| >1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=86.25 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=45.2
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccccc---ccceEeecCchhHHHHHHHHHHhhhcc
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYR---HDLKIYSSDEGRVQMSAAAFAKGLLDL 545 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~r---hdlkIysSdEgRVq~tAaafakg~L~l 545 (716)
.|+||.. +||+.+|+. |. ..||| ...|. +++.|+||+-.|+.+||++|+.||.--
T Consensus 44 ~g~LT~~G~~~~~~lG~~lr~r----------y~--~~~ll--~~~~~p~~~~v~v~st~~~RT~~SA~~~l~GlfP~ 107 (410)
T 1dkq_A 44 LGWLTPRGGELIAYLGHYQRQR----------LV--ADGLL--AKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPD 107 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHH----------HH--HTTSS--CSSSCCCTTTEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCccchHHHHHHHHHHHHHHHH----------HH--hcCCC--ccccCCCcceEEEEeCCcHHHHHHHHHHHhhcCCC
Confidence 5899988 999999994 42 12554 66663 789999999999999999999999854
|
| >2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A | Back alignment and structure |
|---|
Probab=97.68 E-value=4.9e-05 Score=81.75 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=44.6
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcc-ccc-ccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHS-TYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhs-t~r-hdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.. ++|+.||+ - |+. .+|| .. .|- .++.++||+-.|+++||++|+.||..-.+
T Consensus 53 ~g~LT~~G~~q~~~lG~~lr~-r---------Y~~--~~ll--~~~~~~~~~v~~rst~~~Rt~~Sa~~fl~Gl~p~~~ 117 (418)
T 2wnh_A 53 DGELTGHGYAAVVNKGREEGQ-H---------YRQ--LGLL--QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117 (418)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH-H---------HHH--TTSS--CSSSCCTTTEEEEECSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCccChhHHHHHHHHHHHHHH-H---------HHh--cCCc--ccCCCCCCeEEEEECCCHHHHHHHHHHHHHcCCCCC
Confidence 5799987 99999999 4 542 2444 23 244 57999999999999999999999986543
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=1.1e-07 Score=81.67 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=56.2
Q ss_pred hHhhhHHHHHHHHHhCCCCCCcEE--EEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCC
Q 005046 92 HLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGG 169 (716)
Q Consensus 92 ~~l~DR~~~lqiL~~~gIP~P~t~--~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~Gg 169 (716)
.+++||..+.++|+++|||+|++. .+... ++.... ...++.|+|+||.+|. ....++.-.+.-
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~------------~~~~~~-~~~~~~P~vvKp~~~~-~~~gv~~v~~~~- 68 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDA------------EEAVRI-AREIGYPVMIKASAGG-GGKGMRIAWDDE- 68 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSH------------HHHHHH-HHHHCSSEEEEETTSC-CTTTCEEESSHH-
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCCH------------HHHHHH-HHhcCCCEEEEECCCC-CCccEEEeCCHH-
Confidence 467888899999999999999986 44411 122111 1234599999999985 111111111100
Q ss_pred hHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEEC
Q 005046 170 GMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG 217 (716)
Q Consensus 170 G~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG 217 (716)
-....++.+..... ....+..+|+||||+- ..++.|-+||
T Consensus 69 el~~~~~~~~~~~~-------~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 69 ETRDGFRLSSQEAA-------SSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHH-------HHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHH-------hhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 01111111100000 0001467999999974 3577777665
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.37 E-value=8.5e-06 Score=80.93 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc-cCcceeEEeccCCCChHH
Q 005046 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMK 172 (716)
Q Consensus 94 l~DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~ 172 (716)
..|+..+.++|+++|||+|++.++... ++.... -..++.|+|+||.++ .-| .+.|||+.
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~------------~ea~~~-a~~lg~PvvvKp~~~~~~~-------r~~~gGv~ 78 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTL------------DEALEY-AKEIGYPVVLKLMSPQILH-------KSDAKVVM 78 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSH------------HHHHHH-HHHHCSSEEEEEECTTCCC-------HHHHTCEE
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCH------------HHHHHH-HHHhCCCEEEEEccCCCCc-------CCccCCEE
Confidence 458899999999999999999988632 122221 123569999999997 211 11344543
Q ss_pred HHHhhhCCCccccccccccc----------ccCcceEEeeccCCCCceeEEEEECCc
Q 005046 173 ELFRKVGNRSSEFHPDVRRV----------RREGSYIYEEFMPTGGTDVKVYTVGPE 219 (716)
Q Consensus 173 rLfrkign~sS~~~p~~~~~----------r~~gsyIyQEFi~~~G~DIKvytVG~~ 219 (716)
+ .+.+... ...-.... .....+|+|||++ .|..+-|-++++.
T Consensus 79 -~--~v~~~~e-l~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 79 -L--NIKNEEE-LKKKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp -E--EECSHHH-HHHHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred -E--eCCCHHH-HHHHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 2 1111111 00000000 0135799999998 4667766666544
|
| >2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.011 Score=64.33 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=42.6
Q ss_pred HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccCCCCcceeeeEe
Q 005046 484 LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVS 558 (716)
Q Consensus 484 ~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~legeLtPilv~~V~ 558 (716)
+||+.||+ - || +|| .. ...+.|+||+-.||.+||++|+.||+.......|+-+..+.
T Consensus 139 ~lG~~lr~-r---------Y~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glfp~~~~~~~~~~~ii~ 195 (458)
T 2gfi_A 139 KHGIAFRT-K---------YG----ELF--DT--NDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIIS 195 (458)
T ss_dssp HHHHHHHH-H---------HG----GGC--CT--TSCEEEEEESBHHHHHHHHHHHHHHHGGGCSTTTEEEEEEC
T ss_pred HHHHHHHH-H---------hH----Hhc--Cc--CCceEEEecCCchHHHHHHHHHHhccCCCcccCCcceEEee
Confidence 99999999 5 64 344 22 46789999999999999999999999876442234333443
|
| >3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0077 Score=63.31 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=46.4
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccc-cccceEeecCchhHHHHHHHHHHhhhcccCC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~-rhdlkIysSdEgRVq~tAaafakg~L~lege 548 (716)
|+||.. +||+.||+ . |-. ..||| ..+| .+++.++||+..|+++||++|+.||..-.+.
T Consensus 38 g~LT~~G~~q~~~lG~~lr~-~---------Yv~-~~~~l--~~~~~~~~v~~rst~~~Rt~~Sa~~~l~Gl~p~~~~ 102 (342)
T 3it3_A 38 SELTPIGMNQEYNLGLQLRK-R---------YID-KFGLL--PEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTG 102 (342)
T ss_dssp TCBCHHHHHHHHHHHHHHHH-H---------HTT-TSCSS--CSSCCTTSEEEEECSSHHHHHHHHHHHHHHSCTTSS
T ss_pred HhhhHHHHHHHHHHHHHHHH-H---------Hhh-ccccc--cccccCceEEEEECCChHHHHHHHHHHHHhCCCCCC
Confidence 889987 99999999 4 521 12454 3445 5799999999999999999999999987663
|
| >1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0098 Score=64.94 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=43.3
Q ss_pred Cccccc----h------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhccc
Q 005046 477 SGQFID----F------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (716)
Q Consensus 477 GGelT~----~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~le 546 (716)
+|+||. . +||+.||+ - || +|| .. ...+.|+||+-.||.+||++|+.||...+
T Consensus 111 ~g~LT~~~~~~G~~q~~~lG~~lr~-r---------Y~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glf~~~ 172 (460)
T 1qfx_A 111 YNAETTSGPYAGLLDAYNHGNDYKA-R---------YG----HLW--NG--ETVVPFFSSGYGRVIETARKFGEGFFGYN 172 (460)
T ss_dssp TTSBCCSSTTCHHHHHHHHHHHHHH-H---------HG----GGC--CS--SSCEEEEEESBHHHHHHHHHHHHHHHGGG
T ss_pred cchhccCCcCCcHHHHHHHHHHHHH-H---------hH----HHh--CC--CCceEEEECCCcHHHHHHHHHHHHhcCCc
Confidence 689999 5 99999999 5 64 244 22 56789999999999999999999999754
|
| >1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.015 Score=62.59 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=47.7
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccC---
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG--- 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~leg--- 547 (716)
.|+||.. +||+.||+ - || .|| .. +.+.|.||+-.||.+||++|+.||....+
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~-r---------Y~----~ll--~~---~~v~vrST~~~Rti~Sa~~fl~Gl~p~~~~~~ 161 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQ-R---------YK----ALA--RS---VVPFIRASGSDRVIASGEKFIEGFQQAKLADP 161 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHH-H---------TH----HHH--TT---CCCEEEEESCHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccchHHHHHHHHHHHHHHHH-H---------HH----HHh--cc---CceEEEeCCccHHHHHHHHHHHHhcCCccccc
Confidence 5799987 99999999 5 64 344 22 46889999999999999999999997542
Q ss_pred ----CCCcceeeeE
Q 005046 548 ----QLTPILVSLV 557 (716)
Q Consensus 548 ----eLtPilv~~V 557 (716)
.+.|+.+..+
T Consensus 162 ~~~~~~~p~~~~~i 175 (442)
T 1qwo_A 162 GATNRAAPAISVII 175 (442)
T ss_dssp TCCCCCCCCEEEEE
T ss_pred ccccccCccceEEe
Confidence 2557664344
|
| >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.12 Score=59.15 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred HHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCC-CC---cEEEEecCCCccccccccCccceeeecCeeecCcEEEe
Q 005046 75 SYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIP-VP---RYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (716)
Q Consensus 75 ~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIP-~P---~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (716)
++++..+...+|.+.++- +.+|...--+.+.. | +| .|.+- +..+ +. ...+|.|
T Consensus 477 ~~l~~~~v~iieP~~~~l-lsNKailalLw~l~--p~hp~LLpT~f~-------------~~~~-l~------~~~yV~K 533 (619)
T 2io8_A 477 DVLLRPEVLVFEPLWTVI-PGNKAILPILWSLF--PHHRYLLDTDFT-------------VNDE-LV------KTGYAVK 533 (619)
T ss_dssp HHHTCTTCEEESCGGGGT-TTSTTHHHHHHHHS--TTCTTCCCEESS-------------CCHH-HH------HHCEEEE
T ss_pred HHHHhCCCEEECHHHHHH-hhhHHHHHHHHHhC--CCCCCCCCeeec-------------CCcc-cc------cCCEEEc
Confidence 334466788999998865 77775433333322 3 34 44321 1111 11 1349999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCCCce-----eEEEEECCceeEEE
Q 005046 151 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD-----VKVYTVGPEYAHAE 224 (716)
Q Consensus 151 pv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~D-----IKvytVG~~~vhAe 224 (716)
|+-| +-.||.|+-+ +|. . +.+..-.| .+..||||||++-...| |-+|+||++++.+.
T Consensus 534 Pi~gReG~nV~i~~~--~~~--~-----~~~~~~~y--------~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~ 596 (619)
T 2io8_A 534 PIAGRCGSNIDLVSH--HEE--V-----LDKTSGKF--------AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTC 596 (619)
T ss_dssp ETTCCTTTTCEEECT--TSC--E-----EEECCCTT--------TTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCCCEEEEeC--CCh--h-----Hhhccccc--------cCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEE
Confidence 9999 6666666643 111 0 00001111 35679999999987788 99999999999999
Q ss_pred eecC
Q 005046 225 ARKS 228 (716)
Q Consensus 225 ~RKS 228 (716)
.|.+
T Consensus 597 ~R~~ 600 (619)
T 2io8_A 597 LRGD 600 (619)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9997
|
| >3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.032 Score=60.98 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=41.4
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.. ++|+.||. - ||. |+ .. ..+.++||+..||.+||++|+.||+..++
T Consensus 102 ~g~LT~~G~~~~~~lG~~~r~-r---------Y~~----l~--~~---~~~~~rst~~~Rt~~Sa~~f~~Gl~~~~~ 159 (444)
T 3k4q_A 102 ADDLTPFGEQELVNSGIKFYQ-R---------YES----LT--RN---IVPFIRSSGSSRVIASGKKFIEGFQSTKL 159 (444)
T ss_dssp CSSBCHHHHHHHHHHHHHHHH-H---------THH----HH--TT---CCCEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH-H---------hHH----hc--cC---CceEEEeCCccHHHHHHHHHHHhcCCCcc
Confidence 3688886 99999999 4 652 33 21 35789999999999999999999998653
|
| >3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.019 Score=62.06 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=44.6
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccc--c-cccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHST--Y-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst--~-rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
.|+||.. +||+.||+ . |- ..||| ... | ..++.|+||+--|+++||++|+.||.--.|
T Consensus 44 ~g~LT~~G~~q~~~lG~~lr~-r---------Y~--~~~ll--~~~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~P~~~ 109 (398)
T 3ntl_A 44 GGQLTTKGGVLEVYMGHYMRE-W---------LA--QQGMV--KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCD 109 (398)
T ss_dssp TTSBCHHHHHHHHHHHHHHHH-H---------HH--HTTSS--CTTSCCCTTSEEEEECSSHHHHHHHHHHHHHHSTTSC
T ss_pred ccccchHHHHHHHHHHHHHHH-H---------Hh--hcCCC--ccccCCCcCeEEEEECCchHHHHHHHHHHHHhCCCCC
Confidence 3899986 99999999 4 51 12454 232 3 379999999999999999999999987654
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.2 Score=54.07 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCc-EEEeeccc
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP-FVEKPVHG 154 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kP-fVeKpv~G 154 (716)
...+-++|+++|||+|+..++... ++.... -..++.| +|+||..+
T Consensus 5 E~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~P~vVvK~~~~ 50 (388)
T 2nu8_B 5 EYQAKQLFARYGLPAPVGYACTTP------------REAEEA-ASKIGAGPWVVKCQVH 50 (388)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSCEEEEECCS
T ss_pred HHHHHHHHHHCCcCCCCeeEECCH------------HHHHHH-HHHhCCCeEEEEEecC
Confidence 456789999999999999988733 222221 1235589 99999874
|
| >3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.12 Score=54.40 Aligned_cols=55 Identities=24% Similarity=0.211 Sum_probs=34.0
Q ss_pred CcceeEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCCcceeecchhcHHHHHHHHhhhc
Q 005046 353 SEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILV 418 (716)
Q Consensus 353 ~~eLr~vv~ViRHgDRTPKqK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~~~l~~~l~~~~~~~ 418 (716)
+.+|+-|+.+.|||||||..-.. ..+ .. +..+ .+++.-+...|+..+-...|.-.
T Consensus 5 ~~~L~~v~v~~RHG~R~p~~~~p----~~~----~~-w~~~--~g~LT~~G~~q~~~lG~~lr~~Y 59 (342)
T 3it3_A 5 SSKLIFVSMITRHGDRAPFANIE----NAN----YS-WGTE--LSELTPIGMNQEYNLGLQLRKRY 59 (342)
T ss_dssp -CEEEEEEEEEECCCBCCSSCCT----TCC----CC-CSSC--TTCBCHHHHHHHHHHHHHHHHHH
T ss_pred ccEeeEEEEEEeCCCCCCcccCC----CCc----cc-CCCC--hHhhhHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999985321 110 00 2122 35666666677766666655443
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.038 Score=59.82 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccc
Q 005046 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (716)
Q Consensus 98 ~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~G 154 (716)
..+.++|+++|||+|++.++... ++.... -..++.|+|+||.+.
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~PvVvKa~~~ 49 (397)
T 3ufx_B 6 YQAKEILARYGVPVPPGKVAYTP------------EEAKRI-AEEFGKRVVIKAQVH 49 (397)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTSCEEEEECCS
T ss_pred HHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHHcCCCEEEEEccc
Confidence 46788999999999999998733 222221 123459999999883
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=87.06 E-value=0.12 Score=55.87 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecC-cEEEeec
Q 005046 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWK-PFVEKPV 152 (716)
Q Consensus 98 ~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~k-PfVeKpv 152 (716)
..+-++|+++|||+|+..++... ++.... -..++. |+|+||.
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------~ea~~~-a~~lg~~PvVvK~~ 48 (395)
T 2fp4_B 6 YQSKKLMSDNGVKVQRFFVADTA------------NEALEA-AKRLNAKEIVLKAQ 48 (395)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTCSSEEEEEC
T ss_pred HHHHHHHHHCCcCCCCeEEECCH------------HHHHHH-HHHcCCCcEEEEEe
Confidence 46778999999999999988633 222221 112446 9999995
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=0.2 Score=54.28 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=35.1
Q ss_pred cCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCC------CC--ceeEEEE
Q 005046 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT------GG--TDVKVYT 215 (716)
Q Consensus 144 ~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~------~G--~DIKvyt 215 (716)
+.++|+||..|. +|-|.. |++....-...++ .....||+|+||.. +| -|||+||
T Consensus 147 ~~~wI~KP~~~s-----------rG~GI~-l~~~~~~i~~~~~------~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yv 208 (380)
T 3tig_A 147 GNVWIAKSSSGA-----------KGEGIL-ISSDATELLDFID------NQGQVHVIQKYLESPLLLEPGHRKFDIRSWV 208 (380)
T ss_dssp CCCEEEEESCC---------------CCB-CCSCSHHHHHHHH------HHTSCEEEEECCSSBCCBTTTTBCEEEEEEE
T ss_pred CCeEEEeCCccC-----------CCCCEE-EeCCHHHHHHHHh------ccCCcEEEEecccCceeecCCCceeEEEEEE
Confidence 488999999998 888875 6664421100011 13568999999975 44 5999998
Q ss_pred EC
Q 005046 216 VG 217 (716)
Q Consensus 216 VG 217 (716)
+-
T Consensus 209 lv 210 (380)
T 3tig_A 209 LV 210 (380)
T ss_dssp EE
T ss_pred EE
Confidence 83
|
| >3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=0.49 Score=51.14 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.3
Q ss_pred CcceeEEEEEEEcCCCCcc
Q 005046 353 SEELRCVIAVMRHGDRTPK 371 (716)
Q Consensus 353 ~~eLr~vv~ViRHgDRTPK 371 (716)
..+|+-|+.|.|||||||-
T Consensus 4 ~~~L~~V~vl~RHG~R~P~ 22 (398)
T 3ntl_A 4 GYQLEQVLIMSRANLRAPL 22 (398)
T ss_dssp TEEEEEEEEEEECCSBCCC
T ss_pred CCEEEEEEEEecCCCCCCC
Confidence 4699999999999999993
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 716 | ||||
| d1i7na2 | 206 | d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor | 3e-07 | |
| d1uc8a2 | 192 | d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly | 9e-06 | |
| d1nt4a_ | 391 | c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia c | 0.004 |
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 37/231 (16%)
Query: 86 NELEPQHLLHDRRKVYEQLEKY--GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143
N LE + D+ V+ Q+ + ++ L+ + +
Sbjct: 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTL-----------P 49
Query: 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEF 203
P V K H +G G ++ +F V +Y E
Sbjct: 50 TFPVVVKIGHA-----------HSGMGKVKVENHY-----DFQDIASVVALTQTYATAEP 93
Query: 204 MPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI 263
D++V +G Y G N + + + + +
Sbjct: 94 FIDAKYDIRVQKIGNNYKAYMRTSIS---GNWKTNTGSAMLEQIAMSDRYKLWVDACSEM 150
Query: 264 AFRQAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYYDD----AACVLRKM 309
+C + + G+ Y+ +V S +D V+ KM
Sbjct: 151 FGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 201
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Score = 44.6 bits (104), Expect = 9e-06
Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 28/184 (15%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
L K G+P P+ AL +E +E F P V KPV G
Sbjct: 8 LAKAGLPQPKTALATDR---EEALRLMEA----------FGYPVVLKPVIGSWGR----- 49
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA 223
+ +V + + +E++ G D++V+ VG A
Sbjct: 50 ------LLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAA 103
Query: 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYV 283
R+S + N LT +++ + A V DL E V
Sbjct: 104 IYRRSA----HWITNTARGGQAENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLV 159
Query: 284 CDVN 287
+VN
Sbjct: 160 NEVN 163
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.004
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 508 TGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLL----------DLEGQLTPILVSL 556
G+++ + + Y++ R +A F G + G + P +
Sbjct: 71 QGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPV 130
Query: 557 VSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDC 600
++ DS+ A++E E +K +L + + K+++ S C
Sbjct: 131 ITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPAC 174
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 716 | |||
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.79 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.77 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 99.71 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.26 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.21 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.17 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 98.87 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 98.7 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 98.55 | |
| d1nd6a_ | 342 | Prostatic acid phosphatase {Human (Homo sapiens) [ | 98.52 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.47 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 98.46 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.45 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 98.43 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 98.42 | |
| d1nt4a_ | 391 | Glucose-1-phosphatase {Escherichia coli [TaxId: 56 | 98.42 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 98.37 | |
| d1dkla_ | 409 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 98.31 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 98.3 | |
| d1qwoa_ | 435 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 98.1 | |
| d1ihpa_ | 438 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 98.01 | |
| d1qfxa_ | 447 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 97.94 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 97.86 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 95.73 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 82.16 |
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=3.6e-19 Score=164.29 Aligned_cols=165 Identities=22% Similarity=0.274 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHh
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (716)
|++++|.|+++|||+|+|++++.. ++..++. ..++.|+|+||..|. .|.|+.....
T Consensus 1 K~~~~~~l~~~GipvP~t~~~~~~------------~~~~~~~-~~~g~P~ivKP~~g~-----------~g~gv~~~~~ 56 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTALATDR------------EEALRLM-EAFGYPVVLKPVIGS-----------WGRLLAXXXX 56 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-HHHCSSEEEECSBCC-----------BCSHHHHHHH
T ss_pred CHHHHHHHHHcCcCCCCEEEECCH------------HHHHHHH-HHhCCCEEEECCcCC-----------cccceeeccc
Confidence 678999999999999999998732 2222211 234599999999997 6777642222
Q ss_pred hhCCCcccccc-cccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH
Q 005046 177 KVGNRSSEFHP-DVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK 255 (716)
Q Consensus 177 kign~sS~~~p-~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk 255 (716)
.-. ....... +......+..+|+||||+....|++|+++|++++++..|+.+ .+..+........+..+.++..
T Consensus 57 ~~~-~~~~~~~~~~~~~~~~~~~lvqefi~g~~~~~~v~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 131 (192)
T d1uc8a2 57 XXX-XXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSA----HWITNTARGGQAENCPLTEEVA 131 (192)
T ss_dssp HHC-------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC------------------CEECCCCHHHH
T ss_pred ccc-chhhHHHHHHHhccCCCCEEEEEecCCCCeeEEEEEECCEEEeEEEeeec----ccccccccccccccccchhhhh
Confidence 221 1111111 111223566799999999877899999999999999998764 3445566666777889999999
Q ss_pred HHHHHHHHHhcCceeeEeEEeeCCCcEEEeccCcc
Q 005046 256 QMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 256 ~iA~ka~kafgq~VcGfDLLRs~g~syV~DVNgwS 290 (716)
.++.+++++.+...||||++.+++++||+|||.-.
T Consensus 132 ~~~~~~~~~~~~g~~~vD~~~~~~~~~vlEiN~r~ 166 (192)
T d1uc8a2 132 RLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTM 166 (192)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETTC
T ss_pred hhhhhHHHhhhccccceEEEecCCCEEEEEEcCCC
Confidence 99999999999999999999999999999999654
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=3.5e-19 Score=171.09 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=130.6
Q ss_pred CCchhhhHhhhHHHHHH--HHHhC-----CCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcc
Q 005046 86 NELEPQHLLHDRRKVYE--QLEKY-----GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (716)
Q Consensus 86 Ndl~~q~~l~DR~~~lq--iL~~~-----gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHn 158 (716)
|+++++..+.||-.+|. ++... ++|++.+.... +..+..... +.|+|+||..|.
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~------------~~~~~~~~~----~~PvVvKP~~g~--- 61 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYP------------NHREMLTLP----TFPVVVKIGHAH--- 61 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES------------SGGGGSSCC----CSSEEEEESSCS---
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeeccccc------------chhHHhhhc----CCceEEecCCCC---
Confidence 89999999999965543 22334 45555443322 112222222 489999999997
Q ss_pred eeEEeccCCCChHHHHHhhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceee
Q 005046 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (716)
Q Consensus 159 i~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrr 237 (716)
.|-|+. +++.. .+ +..-+. ....+..+++||||+. +.|+||+++|+.++++..|.. .|.|+.
T Consensus 62 --------~g~Gv~-~v~~~---~~-l~~~~~~~~~~~~~~~vqe~I~~-~~dirv~vig~~~~~~~~~~~---~~~~~~ 124 (206)
T d1i7na2 62 --------SGMGKV-KVENH---YD-FQDIASVVALTQTYATAEPFIDA-KYDIRVQKIGNNYKAYMRTSI---SGNWKT 124 (206)
T ss_dssp --------TTTTEE-EECSH---HH-HHHHHHHHHHHTCCEEEEECCCE-EEEEEEEEETTEEEEEEEESS---CTTTSC
T ss_pred --------CCCCeE-EEeec---ch-hhhHHHHHhhccCeEEEEEeecc-cceEEEEEEecceeEEEeecc---cccccc
Confidence 666764 33221 11 111011 2235678999999975 589999999999999888855 688999
Q ss_pred cCCCCceeeeeeCCHHHHHHHHHHHHHhc-CceeeEeEEeeC-CCcEEEeccCccccccchhhHHHHHHHHHHHHHHhhC
Q 005046 238 NPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKA 315 (716)
Q Consensus 238 N~~gke~r~pv~Lt~eEk~iA~ka~kafg-q~VcGfDLLRs~-g~syV~DVNgwSFVK~n~kYYddcA~IL~~~~l~~~~ 315 (716)
|.++++...+. ..+++++++.+++++++ ..+||||++.+. |++||+|||+-++..-....+.+ .+++.+++++.+.
T Consensus 125 n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gvD~~~~~dG~~yvlEvN~~~~~~~~~~~~~~-~~~i~d~v~~~~~ 202 (206)
T d1i7na2 125 NTGSAMLEQIA-MSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVED-RQLITDLVISKMN 202 (206)
T ss_dssp SCCCSSEEEEC-CCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHH-HHHHHHHHHHHHH
T ss_pred ccccCcccccc-CChHHHHHHHHHhhhccccceeeEEEEEcCCCCEEEEEEcCCCcccccchHHHH-HHHHHHHHHHHHH
Confidence 99988877555 55666777777877775 799999999986 56999999997765444333333 4677777777653
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.3e-18 Score=164.46 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=108.9
Q ss_pred CCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccccccccc
Q 005046 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (716)
Q Consensus 111 ~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 190 (716)
+|+|++.+.. + +..++++-+ .|+|.||+.|+ .|.|+. ++... .+.....+.
T Consensus 13 ~P~Tlit~~~---~------~~~~f~~~~-----g~vV~Kpl~gs-----------~G~gv~-~~~~~---~~~~~~~~~ 63 (192)
T d1gsaa2 13 TPETLVTRNK---A------QLKAFWEKH-----SDIILKPLDGM-----------GGASIF-RVKEG---DPNLGVIAE 63 (192)
T ss_dssp SCCEEEESCH---H------HHHHHHHHH-----SSEEEECSSCC-----------TTTTCE-EECTT---CTTHHHHHH
T ss_pred CCCeEEECCH---H------HHHHHHHHc-----CCeEEEEcCCC-----------eEEEEE-EeecC---chhhhHHHH
Confidence 7999998733 1 122333323 48999999998 777764 33321 111111111
Q ss_pred --ccccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 005046 191 --RVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (716)
Q Consensus 191 --~~r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~kaf-- 265 (716)
.......+++|+|++. .+.|+||+|||+.++.|+.|.+| .+|.||+|.++|+...++.+|+++.++|.++++++
T Consensus 64 ~~~~~~~~~~~~q~~~~~~~~~d~Rv~vv~~~~~~a~~r~~~-~~~~~~~n~~~Gg~~~~~~~~~~~~~~a~~~~~~l~~ 142 (192)
T d1gsaa2 64 TLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIP-QGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKE 142 (192)
T ss_dssp HHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEEC-CSSCSCCCGGGTCEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccccccccccCceeEEEEECCcceEEEEEecc-cCCcchhhhhccCcceeecccHHHHHHHHHHHHHHHh
Confidence 1234555788999998 78999999999999999888766 58999999999999999999999999999999887
Q ss_pred -cCceeeEeEEeeCCCcEEEeccC
Q 005046 266 -RQAVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 266 -gq~VcGfDLLRs~g~syV~DVNg 288 (716)
|+.+|||||+ ++||+|||.
T Consensus 143 ~gl~~~gVDii----~~~~~EiNv 162 (192)
T d1gsaa2 143 KGLIFVGLDII----GDRLTEINV 162 (192)
T ss_dssp TTCCEEEEEEE----TTEEEEEEC
T ss_pred hcCceEEEEee----CCeEEEEEc
Confidence 9999999999 458888883
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.26 E-value=1.7e-11 Score=115.08 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||..++++++++|||||++.+++.+. +.+. ..++.|+|+||++|. .|-|+.
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~~~~~~~------------~~~~---~~~~fP~viKP~~gg-----------~s~Gv~--- 51 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFWVINKDD------------RPVA---ATFTYPVFVKPARSG-----------SSFGVK--- 51 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEEEECTTC------------CCCG---GGSCSCEEEEESSCC-----------TTTTCE---
T ss_pred CHHHHHHHHHHCCCCCCCeEEECchh------------HHHH---HhcCCCEEEeecccc-----------Ccchhc---
Confidence 79999999999999999999997331 1111 235699999999874 333432
Q ss_pred hhhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEE-----eecCCCCCCceeecC---CCCce--
Q 005046 176 RKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNP---DGKEV-- 244 (716)
Q Consensus 176 rkign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe-----~RKSPv~DG~vrrN~---~gke~-- 244 (716)
++.+... +..-+. .......++.|+|++ |..+.+++++....--. ...+-.......+.. ..++.
T Consensus 52 -~v~~~~e-l~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (211)
T d1e4ea2 52 -KVNSADE-LDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 127 (211)
T ss_dssp -EECSGGG-HHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEE
T ss_pred -ccccccc-chhhcccccccccccccccccc--cccceeeccCCCcceeeeeceeeccccchhhhhhhhhhcccccceee
Confidence 2222211 111111 223456689999995 77888888875432111 011100011111111 12222
Q ss_pred eeeeeCC----HHHHHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEeccCc
Q 005046 245 RYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 289 (716)
Q Consensus 245 r~pv~Lt----~eEk~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVNgw 289 (716)
-.|..++ .+-+++|.++++++|.. +|++|+.... |.+||+|||.-
T Consensus 128 ~~p~~~~~~~~~~i~~~a~~~~~~lg~~g~~~id~~~~~~g~~~viEiN~~ 178 (211)
T d1e4ea2 128 TVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTL 178 (211)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESS
T ss_pred eccccccHhhhhhhHHHHHHHHHhhccCCeeEEEEEEcCCCCEEEEEEeCC
Confidence 2233444 35667889999999987 9999999875 56999999943
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.21 E-value=5.4e-11 Score=112.93 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=112.1
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rL 174 (716)
||..+.++|+++|||||++.++++.. ...+.+.---..++.|+|+||++|. .++|++..... .|
T Consensus 1 dK~~~k~~l~~~gi~tp~~~~~~~~~---------~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~~~------el 65 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYIVVDPES---------ANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAE------EY 65 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEEEECTTG---------GGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHH------HH
T ss_pred CHHHHHHHHHHcCCCCCCEEEEchhh---------cChHHHHHHHHHhCCCEEEEEeccCCCccceeccccc------hh
Confidence 78899999999999999999998442 1122222111345699999999984 34444333221 11
Q ss_pred HhhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc--eeE---EEe-ecCCCCCCceeec--CCCCc---
Q 005046 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE--YAH---AEA-RKSPVVDGVVMRN--PDGKE--- 243 (716)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~--~vh---Ae~-RKSPv~DG~vrrN--~~gke--- 243 (716)
-..+.. .......++.|||+.. ++.+-+.+++.. .+. +.. ...+..++.+.-+ ...++
T Consensus 66 ~~~~~~----------~~~~~~~~liee~i~g-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 134 (228)
T d1ehia2 66 TEALSD----------SFQYDYKVLIEEAVNG-ARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVH 134 (228)
T ss_dssp HHHHHH----------HTTTCSCEEEEECCCC-SCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCE
T ss_pred hhhhhh----------hcccccccccceEEec-cceEEEEEeeCCCcceeeeeeeeccccccccceeeeecccccccccc
Confidence 111100 1224556899999976 345555444432 111 111 1111123322211 12222
Q ss_pred eeeeeeCCHHH----HHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEecc---Cc---ccc-----ccchhhHHHHHHHH
Q 005046 244 VRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVL 306 (716)
Q Consensus 244 ~r~pv~Lt~eE----k~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVN---gw---SFV-----K~n~kYYddcA~IL 306 (716)
...+..++++. +++|.++++++|.. ++.+|++.+. |.+||+||| || |.+ .....|++=...|+
T Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~lg~~~~~~iD~~~d~~g~~~~lEvN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii 214 (228)
T d1ehia2 135 FQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLI 214 (228)
T ss_dssp EESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhhcCCeeeEEEEEcCCCcEEEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 23455667644 45788888999986 5559988865 569999999 55 222 35578888778888
Q ss_pred HHHHHH
Q 005046 307 RKMFLE 312 (716)
Q Consensus 307 ~~~~l~ 312 (716)
..-+-+
T Consensus 215 ~~~~~~ 220 (228)
T d1ehia2 215 DYGFED 220 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766644
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.17 E-value=1e-11 Score=116.65 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHh
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (716)
|.++-++|+++|||||++..+++...... ..++.+.. -..++.|+|+||..|. .|-|+.
T Consensus 1 K~~tk~~~~~~Giptp~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~P~vvKP~~g~-----------~s~Gv~---- 59 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKG-----LSDKQLAE-ISALGLPVIVKPSREG-----------SSVGMS---- 59 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHHHC-----CCTHHHHH-HHTTCSSEEEEETTCC-----------TTTTCE----
T ss_pred CHHHHHHHHHcCCCCCCeEEEechhhccc-----chHHHHHH-HHhcCCCEEEeecccc-----------Cceecc----
Confidence 57889999999999999999974310000 01111111 1125799999999985 444443
Q ss_pred hhCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceee----cCCCCcee----ee
Q 005046 177 KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR----NPDGKEVR----YP 247 (716)
Q Consensus 177 kign~sS~~~p~~~-~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe~RKSPv~DG~vrr----N~~gke~r----~p 247 (716)
++.|.... ..-+. ....+..++.|+|+. |.++.|+++|+.......= .| .++.+.. +....... .+
T Consensus 60 ~v~~~~el-~~~~~~~~~~~~~vlve~~i~--g~e~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (210)
T d1iowa2 60 KVVAENAL-QDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRI-QP-SGTFYDYEAKFLSDETQYFCPAGLE 134 (210)
T ss_dssp EESSGGGH-HHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEE-EC-SSSSSCHHHHHTCSCCEEESSCCCC
T ss_pred cccchhhh-hHHHHHhhccCcccccccccc--CceeEEEeecCcccceeEE-ec-ccceeeecccccccccccccccccc
Confidence 22222111 11011 224567899999995 8999999998864433322 11 1221111 12222222 23
Q ss_pred eeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEeccCc
Q 005046 248 VLLTPNEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 289 (716)
Q Consensus 248 v~Lt~eEk~iA~ka~kafgq~-VcGfDLLRs~-g~syV~DVNgw 289 (716)
..+..+.+++|.++++++|.. +|.+|++... |.+||+|||.-
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~~~vdf~~d~~g~~~~lEiN~~ 178 (210)
T d1iowa2 135 ASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 178 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESS
T ss_pred cccchhHHHHHHHHHHHhCCCCceEEEEEECCCCCEEEEEEeCC
Confidence 334456778999999999988 8889988865 56999999953
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=2.1e-09 Score=102.01 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=100.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHHH
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLf 175 (716)
|..+=++|.++|||+|++..++.. ++..+.- ..++.|+|+||.+|. ..++++..... -....+
T Consensus 2 K~~~K~~l~~~gIptp~~~~~~~~------------~e~~~~~-~~ig~PvVvKP~~~~gs~Gv~~v~~~~---el~~a~ 65 (220)
T d1vkza3 2 KVYAKRFMKKYGIRTARFEVAETP------------EELREKI-KKFSPPYVIKADGLARGKGVLILDSKE---ETIEKG 65 (220)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-TTSCSSEEEEESSCCSSCCEEEESSHH---HHHHHH
T ss_pred HHHHHHHHHHCCCCCCCeEEeCCH------------HHHHHHH-HHcCCCEEEEeccccccccceeeccHH---HHHHHh
Confidence 455568899999999999988722 2322211 235699999999874 12222211100 011122
Q ss_pred hhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEE-EeecC-CCCCCceeecCCCCceee----eee
Q 005046 176 RKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA-EARKS-PVVDGVVMRNPDGKEVRY----PVL 249 (716)
Q Consensus 176 rkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhA-e~RKS-Pv~DG~vrrN~~gke~r~----pv~ 249 (716)
++.-. ++. ....+..++.|||+.-..-.+-+++-|..+..- ..|.- ...+|....+..+.+... +..
T Consensus 66 ~~~~~----~~~---~~~~~~~vliEe~i~g~e~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (220)
T d1vkza3 66 SKLII----GEL---IKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSD 138 (220)
T ss_dssp HHHHH----TSS---STTCCSCEEEEECCCSEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHH
T ss_pred hhhcc----ccc---cccccceEeeecccccccceeEEEEeCCEEEEcccccccccccccccccccccccccccCCccch
Confidence 22210 110 123466799999998766667778778775542 22211 112555555555544433 344
Q ss_pred CCHHHHHHHHHHHHHhc---C---ceeeEeEEeeCCCcEEEeccCcc
Q 005046 250 LTPNEKQMAREVCIAFR---Q---AVCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 250 Lt~eEk~iA~ka~kafg---q---~VcGfDLLRs~g~syV~DVNgwS 290 (716)
+..++.++...+++++. . .++.+|+.-+++++||+|+|.=.
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~~~~G~~~~d~~~~~~gp~viEiN~R~ 185 (220)
T d1vkza3 139 TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRL 185 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhccceeEEEeeCCCEEEEEEECCC
Confidence 45566666666666553 2 46669999999999999999753
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.5e-08 Score=92.96 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=91.8
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||.+.=++|+++|||||++..+... + +..+.+. .++.|+|+||..|. .|+|+.++.
T Consensus 1 DK~~~K~~l~~~GIptp~~~~v~s~---~------d~~~~~~----~ig~P~vvKp~~~~-----------~~~~~~~v~ 56 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQLLAER---S------EWPAVFD----RLGELAIVKRRTGG-----------YDGRGQWRL 56 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEEEECCG---G------GHHHHHH----HHCSCEEEEESSSC-----------BTTBSEEEE
T ss_pred CHHHHHHHHHHCCcCCCCceEECCH---H------HHHHHHH----HcCCCeeeeecccc-----------cccceeeec
Confidence 6888889999999999999999733 1 1222232 34599999998885 444444322
Q ss_pred hhhCCCcccccccccccccCcceEEeeccCCCC-ceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH--
Q 005046 176 RKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG-TDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP-- 252 (716)
Q Consensus 176 rkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G-~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~-- 252 (716)
+. ..... .....++.+|.|||+..+. ..+=++.-+...+.. -.+ .-...........-.|..+++
T Consensus 57 ~~----~~~~~---~~~~~~~~~i~ee~i~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~p~~~~~~~ 124 (198)
T d3etja3 57 RA----NETEQ---LPAECYGECIVEQGINFSGEVSLVGARGFDGSTVF---YPL--THNLHQDGILRTSVAFPQANAQQ 124 (198)
T ss_dssp CG----GGGGG---SCGGGTTTEEEEECCCCSEEEEEEEEECTTSCEEE---CCC--EEEEEETTEEEEEEECSSCCHHH
T ss_pred ch----hhHHH---HHhccCceEEEeeeccccccccceeeecccceeee---ece--eeccccccceeeeeeccccccch
Confidence 21 11111 1334678899999997532 122122112111110 010 000111111122233444554
Q ss_pred --HHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEeccCc
Q 005046 253 --NEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGW 289 (716)
Q Consensus 253 --eEk~iA~ka~kafgq~-VcGfDLLRs~g~syV~DVNgw 289 (716)
+...+|.+++++++.. ++.+|+..++++.||||||.=
T Consensus 125 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~Evn~R 164 (198)
T d3etja3 125 QARAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPR 164 (198)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEEESS
T ss_pred hhhhhhhhhHHHHhhhhcccchhheeecCCcEEEEEEECC
Confidence 4567888888888753 457899999999999999964
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.55 E-value=6.6e-08 Score=92.06 Aligned_cols=155 Identities=16% Similarity=0.071 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||.+.-++|+++|||+|+++-. .+ .++.|+|+||..|. .|-|+. ++
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~~--------------~~--------~i~~P~IVKP~~g~-----------gs~Gv~-~v 46 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVYED--------------PD--------DIEKPVIVKPHGAK-----------GGKGYF-LA 46 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBCSC--------------GG--------GCCSCEEEEECC---------------TTCE-EE
T ss_pred CHHHHHHHHHHcCCCCchhhhC--------------HH--------HcCCCEEEEECCCC-----------CCCCeE-EE
Confidence 7888899999999999974311 11 13599999999986 333432 11
Q ss_pred hhhCCCccccccccc------ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEee-cCCCCCCceee-----cCC
Q 005046 176 RKVGNRSSEFHPDVR------RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEAR-KSPVVDGVVMR-----NPD 240 (716)
Q Consensus 176 rkign~sS~~~p~~~------~~r~~gsyIyQEFi~~~G~DIKvytVG~---~~vhAe~R-KSPv~DG~vrr-----N~~ 240 (716)
+.. ++++..+. ....+..+|.|||++-.--.+-++.-.. ..+.+..+ .....+|...+ ..+
T Consensus 47 ~~~----~e~~~~~~~~~~~~~~~~~~~~iiee~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (235)
T d2r85a2 47 KDP----EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEF 122 (235)
T ss_dssp SSH----HHHHHHHHHHHCCCSGGGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTS
T ss_pred ech----HHHHHHHHHHHhhhhhCCCcchhHHhhcCCeEEEEEEeecccccceEEEEeecCCcceeeEEEeccceeEecc
Confidence 110 00110000 1123567999999965323333332211 11222222 12222333321 111
Q ss_pred CCc------e----eeeeeCCHHHHHHHHHHHHHh------cCceeeEeEEeeCC-CcEEEeccC
Q 005046 241 GKE------V----RYPVLLTPNEKQMAREVCIAF------RQAVCGFDLLRCEG-RSYVCDVNG 288 (716)
Q Consensus 241 gke------~----r~pv~Lt~eEk~iA~ka~kaf------gq~VcGfDLLRs~g-~syV~DVNg 288 (716)
+.. . ..+..+..+-+++|.++++++ ...++++|++.+.+ ..||+|||.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~~~dg~~~viEiNp 187 (235)
T d2r85a2 123 DMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISA 187 (235)
T ss_dssp CCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred cCCCCcceeeccCcccchhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEEcCCCCEEEEEEeC
Confidence 111 1 112234456688888888886 45689999999865 578999994
|
| >d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Prostatic acid phosphatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.7e-07 Score=93.25 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=44.6
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccccc-ccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~r-hdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
|+||.. +||+.||+ . |+. || +..|- .++.|+||+..|+++||++|+.||+..++
T Consensus 36 G~LT~~G~~q~~~lG~~lr~-~---------Y~~----ll--~~~~~~~~i~v~st~~~Rt~~SA~afl~Gl~p~~~ 96 (342)
T d1nd6a_ 36 GQLTQLGMEQHYELGEYIRK-R---------YRK----FL--NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG 96 (342)
T ss_dssp TCBCHHHHHHHHHHHHHHHH-H---------TTT----TT--CSSCCGGGEEEEEESCHHHHHHHHHHHHHHSCCCG
T ss_pred chhhHHHHHHHHHHHHHHHH-H---------HHH----hc--CCcCCcceEEEEeCCChHHHHHHHHHHHhcCCCCc
Confidence 889987 99999999 7 863 33 44443 46899999999999999999999997654
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=8.9e-08 Score=95.38 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
||.+.-++|.+.|||+|++..++. .+++++.. ..++.|+|+||..|. .|.|++ .+
T Consensus 1 Dr~~~r~~~~~~gip~~~~~~~~~------------~~ea~~~~-~~ig~PvviKp~~~~-----------gg~G~~-~v 55 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSGIAHT------------MEEALAVA-ADVGFPCIIRPSFTM-----------GGSGGG-IA 55 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEEEESS------------HHHHHHHH-HHHCSSEEEEETTCC-----------TTTTCE-EE
T ss_pred CHHHHHHHHHHCCCCCCCceEeCC------------HHHHHHHH-HHcCCCEEEEECCCC-----------CCCceE-Ee
Confidence 688888999999999999988872 23444321 235699999998875 343432 22
Q ss_pred hhhCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC---c--eeEEEeecCCCCCCceeecCCCCceeeeeeC
Q 005046 176 RKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---E--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLL 250 (716)
Q Consensus 176 rkign~sS~~~p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~---~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~L 250 (716)
.....-.+.+. +......++.+++|||+.. ..-+-|.+++. . ++++..|..+ ..+++-+-.+..-+-.|
T Consensus 56 ~~~~el~~~~~-~a~~~~~~~~v~iEe~l~g-~~e~~v~~~~d~~g~~~~~~~~~~~~~----~~~~~~~~~~~aP~~~L 129 (275)
T d1a9xa5 56 YNREEFEEICA-RGLDLSPTKELLIDESLIG-WKEYEMEVVRDKNDNCIIVCSIENFDA----MGIHTGDSITVAPAQTL 129 (275)
T ss_dssp SSHHHHHHHHH-HHHHHCTTSCEEEEECCTT-SEEEEEEEEECTTCCEEEEEEEEESSC----TTSCGGGSCEEESCCSC
T ss_pred eCHHHHHHHHH-HHHhhCCCCcEEEeeecCC-chhheeeeEEecCCCEEEEEeeccccc----cCcccCceeEEcCCCcC
Confidence 21111001110 0001124667899999986 34466666642 2 4567778665 23344445565545569
Q ss_pred CHHH----HHHHHHHHHHhcC--ceeeEeEEee--CCCcEEEeccCc
Q 005046 251 TPNE----KQMAREVCIAFRQ--AVCGFDLLRC--EGRSYVCDVNGW 289 (716)
Q Consensus 251 t~eE----k~iA~ka~kafgq--~VcGfDLLRs--~g~syV~DVNgw 289 (716)
++++ .++|.++++++|. .++-|.++-. ++..|++|||--
T Consensus 130 ~~~~~~~i~~~a~~i~~~lg~~~G~~~~ef~~~~~~~~~~~iE~npR 176 (275)
T d1a9xa5 130 TDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPR 176 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHcCceECceEEEEEEeCCCCEEEEEEecCC
Confidence 9875 4567899999997 4666888765 456899999943
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=2.1e-08 Score=92.49 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=78.6
Q ss_pred HhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCccc
Q 005046 105 EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184 (716)
Q Consensus 105 ~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~ 184 (716)
++.|||+|++..+.. .+|..+ .-..++.|+|+||..|. -|.|+. +.....+..+.
T Consensus 11 ~~~Gip~p~~~~v~s------------~~dl~~-~~~~ig~PvVvKP~~g~-----------gs~gv~-~v~~~~el~~a 65 (206)
T d1kjqa3 11 EELQLPTSTYRFADS------------ESLFRE-AVADIGYPCIVKPVMSS-----------SGKGQT-FIRSAEQLAQA 65 (206)
T ss_dssp TTSCCCBCCEEEESS------------HHHHHH-HHHHHCSSEEEEESCC--------------CCCE-EECSGGGHHHH
T ss_pred HHCCCCCCCCeEECC------------HHHHHH-HHHHhCCCEEEeeccCC-----------ccCCce-EEcCHHHHHHH
Confidence 479999999999982 233333 22345699999999985 233332 22211111111
Q ss_pred ccccccccc-cCcceEEeeccCCCCc-eeEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHH
Q 005046 185 FHPDVRRVR-REGSYIYEEFMPTGGT-DVKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMARE 260 (716)
Q Consensus 185 ~~p~~~~~r-~~gsyIyQEFi~~~G~-DIKvytVG~~--~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~eEk~iA~k 260 (716)
++-...... ....++.|+|+..... .+-++.-+.. +++...++.+ .+........ ...+..+..+.++++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 141 (206)
T d1kjqa3 66 WKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQE--DGDYRESWQP--QQMSPLALERAQEIARK 141 (206)
T ss_dssp HHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEEE--TTEEEEEEEC--CCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCcceeeeeeccccceeeeeeeeecCCCceeeccceeeec--cCccceeecc--ccCCHHHHHHHHHHHHh
Confidence 110000111 2455666666654321 1212222211 1111222221 2222211111 11122233456778888
Q ss_pred HHHHhcCc-eeeEeEEeeCCCcEEEeccC
Q 005046 261 VCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 261 a~kafgq~-VcGfDLLRs~g~syV~DVNg 288 (716)
+..+++.. +.++|+..+.+++||+|||.
T Consensus 142 ~~~~~~~~g~~~~e~~~~~~~~~viEin~ 170 (206)
T d1kjqa3 142 VVLALGGYGLFGVELFVCGDEVIFSEVSP 170 (206)
T ss_dssp HHHHHCSSEEEEEEEEEETTEEEEEEEES
T ss_pred hhhhhhceeeeccccccccCCceEEEeec
Confidence 88888876 57799999999999999994
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=4.2e-08 Score=98.11 Aligned_cols=157 Identities=14% Similarity=0.166 Sum_probs=88.9
Q ss_pred HHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCC
Q 005046 101 YEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN 180 (716)
Q Consensus 101 lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign 180 (716)
.++|++.|||+|++.++. +.+++++. -+.++.|+|+||..|. .|-|+. +++....
T Consensus 3 ~~~l~~lgi~~p~~~~v~------------s~~ea~~~-a~~iGfPvivKps~~~-----------gG~G~~-iv~~~~e 57 (259)
T d1a9xa6 3 QHAVERLKLKQPANATVT------------AIEMAVEK-AKEIGYPLVVRASYVL-----------GGRAME-IVYDEAD 57 (259)
T ss_dssp HHHHHHHTCCCCCEEECC------------SHHHHHHH-HHHHCSSEEEEC------------------CEE-EECSHHH
T ss_pred HHHHHHCCCCCCCceEEC------------CHHHHHHH-HHHhCCCEEEEECCCC-----------CCCccE-eecCHHH
Confidence 478999999999999998 23445442 2346699999998875 222322 2211111
Q ss_pred CcccccccccccccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCc---eeeeeeCCHHH--
Q 005046 181 RSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE---VRYPVLLTPNE-- 254 (716)
Q Consensus 181 ~sS~~~p~~~~~r~~gsyIyQEFi~~-~G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~~gke---~r~pv~Lt~eE-- 254 (716)
-...+.- ......++.++.|+|+.. .--+|-+..=|...+-+-.... .-++..|-|+ +.-|..||+++
T Consensus 58 l~~~~~~-a~~~~~~~~vlie~~i~~~~Eiev~~i~Dg~~~~i~~i~e~-----i~~~gvhsgds~~~~p~~~l~~~~~~ 131 (259)
T d1a9xa6 58 LRRYFQT-AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEH-----IEQAGVHSGDSACSLPAYTLSQEIQD 131 (259)
T ss_dssp HHHHHHH-CC--------EEEBCCTTCEEEEEEEEECSSCEEEEEEEEE-----SSCTTSCGGGCCEEESCSSCCHHHHH
T ss_pred HHHHhhh-hhcccccchhhhhhhcCCCeEEEEEEEEeCCcEEEEeeeec-----cccCcceeEeccccccCccCCHHHHH
Confidence 1111110 001224677999999986 2355666655554332211100 0112334333 23556788877
Q ss_pred --HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEeccC
Q 005046 255 --KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (716)
Q Consensus 255 --k~iA~ka~kafgq-~VcGfDLLRs~g~syV~DVNg 288 (716)
+++|.++++++|. .+|+|+++-.++..||+|||=
T Consensus 132 ~l~~~a~kia~~l~~~G~~~vef~v~~~~~y~iEvNp 168 (259)
T d1a9xa6 132 VMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNP 168 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEECSSCEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhccceeEEEEEECCEEEEEEccc
Confidence 6688999999997 899999999889999999994
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.43 E-value=1.6e-07 Score=89.03 Aligned_cols=186 Identities=13% Similarity=0.179 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCCC-CcEE-EEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 005046 98 RKVYEQLEKYGIPV-PRYA-LVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (716)
Q Consensus 98 ~~~lqiL~~~gIP~-P~t~-~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (716)
.++-++|+++|||+ |.+. .++. .++....- ..++.|+|+||.+|. .|.|+. .+
T Consensus 2 ~~~k~~~~~aGvP~~p~~~~~v~s------------~~ea~~~~-~~ig~P~vvKP~~~~-----------~s~gv~-~v 56 (214)
T d1ulza3 2 ARSKEVMKKAGVPVVPGSDGVLKS------------LEEAKALA-REIGYPVLLKATAGG-----------GGRGIR-IC 56 (214)
T ss_dssp HHHHHHHHHTTCCBCCBCSSSCCC------------HHHHHHHH-HHHCSSEEEEECSSS-----------SCCSCE-EE
T ss_pred HHHHHHHHHcCCCcCCCcCCCCCC------------HHHHHHHH-HHcCCCEEEeecccc-----------CCccce-ee
Confidence 45668999999996 7653 2331 12222211 235699999999885 333332 11
Q ss_pred hhhCCCccccc---ccccccccCcceEEeeccCCCCceeEEEEECCc-eeEEEeecCCCCCCceeecCC-CCceeeeeeC
Q 005046 176 RKVGNRSSEFH---PDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE-YAHAEARKSPVVDGVVMRNPD-GKEVRYPVLL 250 (716)
Q Consensus 176 rkign~sS~~~---p~~~~~r~~gsyIyQEFi~~~G~DIKvytVG~~-~vhAe~RKSPv~DG~vrrN~~-gke~r~pv~L 250 (716)
++.......++ .+......++.+|.||||+-...-+=+++.+++ .++....+- ....++.. ......+..+
T Consensus 57 ~~~~el~~a~~~~~~~~~~~~~~~~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~ 132 (214)
T d1ulza3 57 RNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD----CSIQRRNQKLVEIAPSLIL 132 (214)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEE----EEEEETTEEEEEEESCSSC
T ss_pred eccHHHHHHHHHHHHHHHHhcCCCCceeheeecCcceeeEEEEEcCCCeEEEEeccc----cccCccccceeEEeecccc
Confidence 11100000000 000012246679999999732221122222222 222222110 00111111 1112233345
Q ss_pred CH----HHHHHHHHHHHHhc-CceeeEeEEeeCC-CcEEEeccCccccccchhhHHHHH--HHHHHHHHHhh
Q 005046 251 TP----NEKQMAREVCIAFR-QAVCGFDLLRCEG-RSYVCDVNGWSFVKNSYKYYDDAA--CVLRKMFLEAK 314 (716)
Q Consensus 251 t~----eEk~iA~ka~kafg-q~VcGfDLLRs~g-~syV~DVNgwSFVK~n~kYYddcA--~IL~~~~l~~~ 314 (716)
|+ +-+++|.++++++| ..+|.+|.+...+ ++||+|+|.=. =++..+...+. ++...++..++
T Consensus 133 ~~e~~~~~~~~~~~~~~~lg~~G~~~vef~~~~dg~~~~iEin~R~--~~~~~~~~~a~Gidl~~~~v~~al 202 (214)
T d1ulza3 133 TPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRI--QVEHPVSEMVTGIDIVKWQIKIAA 202 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSC--CTTHHHHHHHHCCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCccceEEEEEECCCCCEEEEEecCcC--CCchhhhHHHHCcCHHHHHHHHHC
Confidence 54 44688999999999 5677899877754 58899999732 13333444443 45555554443
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3.9e-07 Score=88.73 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeeccccCcceeEEeccCCCChHHHHHh
Q 005046 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (716)
Q Consensus 97 R~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (716)
|..+=++|.++|||||++..++.. .+..+++. .++.|+|+||..+. .|-|+. +.+
T Consensus 2 K~f~K~~~~~~~IPt~~~~~~~~~---------~ea~~~~~----~~~~P~VvK~~~~~-----------~gkGv~-i~~ 56 (224)
T d1gsoa3 2 KAFTKDFLARHKIPTAEYQNFTEV---------EPALAYLR----EKGAPIVIKADGLA-----------AGKGVI-VAM 56 (224)
T ss_dssp HHHHHHHHHHTTCCBCCEEEESSS---------SHHHHHHH----HHCSSEEEEC-----------------CCEE-EES
T ss_pred HHHHHHHHHHcCCCCCCceEeCCH---------HHHHHHHH----HcCCCEEEEeCCcc-----------ccccee-eeh
Confidence 445567899999999999887622 12233333 24599999998875 455552 222
Q ss_pred hhCCCcccccccc---cccccCcceEEeeccCCCCceeEEEEECCceeEEE-----eecCCCCCCceeecCCCCceeeee
Q 005046 177 KVGNRSSEFHPDV---RRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRYPV 248 (716)
Q Consensus 177 kign~sS~~~p~~---~~~r~~gsyIyQEFi~~~G~DIKvytVG~~~vhAe-----~RKSPv~DG~vrrN~~gke~r~pv 248 (716)
........++--. ..-..+..+|.|||+.-.--.+=+++=|.++++.. .|-. ||.--.|+-|=+.-.|.
T Consensus 57 ~~~e~~~a~~~~~~~~~~~~~~~~vliEefl~G~E~s~~~i~dg~~~~~~~~~~d~kr~~---d~~~gp~tggmg~~~P~ 133 (224)
T d1gsoa3 57 TLEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVG---DKDTGPNTGGMGAYSPA 133 (224)
T ss_dssp SHHHHHHHHTTTTCSCCTTCTTCCEEEEECCCEEEEEEEEEEESSCEEEEEEEEEEEEEE---TTTEEEEEEEEEEEESC
T ss_pred hHHHHHHHHHHHHhcccccccCceEEeecccccccceeEEEeccCceEeeeccccccccc---ccccccccccccccCCC
Confidence 2111111111000 01123467999999964223334444477766554 3322 66666666544444454
Q ss_pred e-----CCHHH-HHH---HHHHHHHhcCceee---EeEEeeCCC-cEEEeccC
Q 005046 249 L-----LTPNE-KQM---AREVCIAFRQAVCG---FDLLRCEGR-SYVCDVNG 288 (716)
Q Consensus 249 ~-----Lt~eE-k~i---A~ka~kafgq~VcG---fDLLRs~g~-syV~DVNg 288 (716)
. |..+. +.+ +.++.++.|....| ++++-+.+| +||+|+|.
T Consensus 134 p~~~~~l~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mit~~G~p~vlE~N~ 186 (224)
T d1gsoa3 134 PVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNC 186 (224)
T ss_dssp TTCCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTCCEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCceeeeeeccceeeeeCCCEEEEEEec
Confidence 2 22221 122 25556777877666 488777665 99999995
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=1.2e-07 Score=94.21 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=46.4
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccccc-ccceEeecCchhHHHHHHHHHHhhhccc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~r-hdlkIysSdEgRVq~tAaafakg~L~le 546 (716)
|+||+. +||+.||+ . |+. .+++..+.+|. .++.++||+-.|+++||+||+.||+.-+
T Consensus 47 g~LT~~G~~q~~~lG~~lr~-~---------Y~~--~~~l~~~~~~~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~ 110 (391)
T d1nt4a_ 47 GQLTTKGGVLEVYMGHYMRE-W---------LAE--QGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGC 110 (391)
T ss_dssp TCBCHHHHHHHHHHHHHHHH-H---------HHH--TTSSCSSSCCCTTSEEEEECSSHHHHHHHHHHHHHHSTTS
T ss_pred ccccHHHHHHHHHHHHHHHH-H---------HHh--hcCCCCCCCCCccceEEecCCChHHHHHHHHHHHHhCCCC
Confidence 789988 99999999 5 542 25555555565 4899999999999999999999999644
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.37 E-value=1.6e-07 Score=90.50 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChHHHH
Q 005046 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKEL 174 (716)
Q Consensus 96 DR~~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rL 174 (716)
||.+.-++|.++|||+|+.+-. . +.|+.|+|+||..|. ..++++-+...+ ....
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~~--------------~--------~~i~~PvVVKP~~g~gs~Gv~~v~~~~e---l~~a 55 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKYES--------------P--------EDIDGTVIVKFPGARGGRGYFIASSTEE---FYKK 55 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEESS--------------G--------GGCCSCEEEECSCCCC---EEEESSHHH---HHHH
T ss_pred CHHHHHHHHHHCCCCCcccccC--------------H--------hHCCCCEEEEECCCCCCCCeEEeCCHHH---HHHH
Confidence 7888889999999999984311 0 113599999999985 222222222111 1112
Q ss_pred HhhhCCCcccccccccccccCcceEEeeccCCC-----------CceeEEEEECCceeEEEeecCCCCCCceeecC----
Q 005046 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-----------GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNP---- 239 (716)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-----------G~DIKvytVG~~~vhAe~RKSPv~DG~vrrN~---- 239 (716)
++...+. +. .....++.++.|||++-. +.++.+.+++ .|..-.++|.++...
T Consensus 56 ~~~~~~~-~~-----~~~~~~~~v~vEe~i~G~e~~v~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~~~~~~ 122 (238)
T d2r7ka2 56 AEDLKKR-GI-----LTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMD-------KRYESNIDGLVRIPAKDQL 122 (238)
T ss_dssp HHHHHHT-TS-----CCHHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEE-------EEEEEEHHHHTTSCHHHHH
T ss_pred HHHHHHH-Hh-----hccCCCCcEEEEEeecCceEEEEEeecccccceEEEeec-------cCCccEEEEEEEcCHHhee
Confidence 2211100 00 011234678999999742 2222232222 222111122221110
Q ss_pred ----CCCcee---eee----eCCHHHHHHHHHHHHHh------c-CceeeEeEEeeCC-CcEEEeccC
Q 005046 240 ----DGKEVR---YPV----LLTPNEKQMAREVCIAF------R-QAVCGFDLLRCEG-RSYVCDVNG 288 (716)
Q Consensus 240 ----~gke~r---~pv----~Lt~eEk~iA~ka~kaf------g-q~VcGfDLLRs~g-~syV~DVNg 288 (716)
+.+... -+. .+.++-++++.++++++ | ..++++|++.+.+ .+||+|+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~dg~~~viEinp 190 (238)
T d2r7ka2 123 EMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSA 190 (238)
T ss_dssp TCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEES
T ss_pred ccCccccCccccccCccccHHHHHHHHHHHHHHHHHHHHhcccCccccccHhhHhhcCCCEEEEEEEC
Confidence 011111 122 34556778899999998 4 4699999998765 599999996
|
| >d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=3e-07 Score=92.37 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=43.5
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhccccc-ccceEeecCchhHHHHHHHHHHhhhccc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~r-hdlkIysSdEgRVq~tAaafakg~L~le 546 (716)
|+||.. +||+.||+ . |+.. +++.-+..|- .++.|+||+.-|+.+||+||+.||+.-.
T Consensus 44 G~LT~~G~~q~~~lG~~lr~-~---------Y~~~--~~~~~~~~~~~~~i~vrSt~~~Rt~~SA~afl~Gl~p~~ 107 (409)
T d1dkla_ 44 GWLTPRGGELIAYLGHYQRQ-R---------LVAD--GLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDC 107 (409)
T ss_dssp TSBCHHHHHHHHHHHHHHHH-H---------HHHT--TSSCSSSCCCTTTEEEEECSSHHHHHHHHHHHHHHSTTC
T ss_pred chhhHHHHHHHHHHHHHHHH-H---------HHHh--ccCCCCCCCCccceEEEeCCChHHHHHHHHHHHhcCCCc
Confidence 899987 99999999 4 5421 2222133443 4799999999999999999999998643
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.4e-07 Score=88.75 Aligned_cols=167 Identities=16% Similarity=0.232 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhCCCC-CCcE--EEEecCCCccccccccCccceeeecCeeecCcEEEeecccc-CcceeEEeccCCCChH
Q 005046 96 DRRKVYEQLEKYGIP-VPRY--ALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 171 (716)
Q Consensus 96 DR~~~lqiL~~~gIP-~P~t--~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 171 (716)
||..+-++|+++||| +|-+ .+++ +.+++.. --..++.|+|+||..|. ..++.+.+...+ .
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~~~~~------------s~dea~~-~a~~iG~PvivKp~~~~ggrGv~~v~~~~e---l 64 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDGPLGD------------DMDKNRA-IAKRIGYPVIIKASGGGGGRGMRVVRGDAE---L 64 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSSCCCS------------CHHHHHH-HHHHHCSSEEEEEEEEETTEEEEEECSHHH---H
T ss_pred CHHHHHHHHHHcCcCCCCCCCCCCCC------------CHHHHHH-HHHHcCCCEEEecccccCCceeEeecchhH---H
Confidence 678888999999999 4643 1222 1223332 12245699999999874 444444443221 2
Q ss_pred HHHHhhhCCCcccccccccccccCcceEEeeccCCC-CceeEEEEECCceeEE-EeecCCCCCCceeecC-CCCceeeee
Q 005046 172 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVKVYTVGPEYAHA-EARKSPVVDGVVMRNP-DGKEVRYPV 248 (716)
Q Consensus 172 ~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-G~DIKvytVG~~~vhA-e~RKSPv~DG~vrrN~-~gke~r~pv 248 (716)
++.|+-..+... ....++..++||||.-. -..+-+..-|...+.+ ..|.- ....+. +..+..-+.
T Consensus 65 ~~a~~~~~~ea~-------~~~~~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~~~~-----~~~~~~~~~~~~~P~~ 132 (216)
T d2j9ga3 65 AQSISMTRAEAK-------AAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDC-----SMQRRHQKVVEEAPAP 132 (216)
T ss_dssp HHHHHHHHHHTC---------CCCCCEEEEECCSSCEEEEEEEEEESSSCEEEEEEEEE-----EEEETTEEEEEEESCT
T ss_pred HHHHHHHHHHHH-------HhcCCCceEeeeeecCcccceeEEEEcCCCCeeecccccc-----CcccccCCeEEeccCc
Confidence 223332211001 22346779999999762 2333333333322222 11211 111111 122222222
Q ss_pred eCCHH----HHHHHHHHHHHhc-CceeeEeEEeeCCCcEEEeccCcc
Q 005046 249 LLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVNGWS 290 (716)
Q Consensus 249 ~Lt~e----Ek~iA~ka~kafg-q~VcGfDLLRs~g~syV~DVNgwS 290 (716)
.++++ .+.+|.+++.++| ..++++|++-+++++||+|||.=.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~viEvnpR~ 179 (216)
T d2j9ga3 133 GITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRI 179 (216)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEECSC
T ss_pred cccchhhhhhHHHHHHHHHHcCccCcceeEeEecCCeEEEEeecCcc
Confidence 44554 3556778888876 567889999999999999999754
|
| >d1qwoa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus fumigatus [TaxId: 5085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Aspergillus fumigatus [TaxId: 5085]
Probab=98.10 E-value=3.1e-06 Score=86.62 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=42.7
Q ss_pred Cccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhccc
Q 005046 477 SGQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (716)
Q Consensus 477 GGelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~le 546 (716)
.|+||.. +||+.||+ . ||. + ++ .+++.|+||+--|+.+||++|+.||+...
T Consensus 95 ~gqLT~~G~~q~~~LG~~lr~-r---------Y~~----~--~~---~~~i~vrST~~~RTi~SA~afl~GL~p~~ 151 (435)
T d1qwoa_ 95 ADDLTPFGEQQLVNSGIKFYQ-R---------YKA----L--AR---SVVPFIRASGSDRVIASGEKFIEGFQQAK 151 (435)
T ss_dssp SSSBCHHHHHHHHHHHHHHHH-H---------THH----H--HT---TCCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHH-H---------hHh----h--cC---ccceEEEecCchHHHHHHHHHHHhcCCCc
Confidence 4899988 99999999 5 642 2 23 35789999999999999999999998654
|
| >d1ihpa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus ficuum [TaxId: 5058]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Aspergillus ficuum [TaxId: 5058]
Probab=98.01 E-value=2.8e-06 Score=87.44 Aligned_cols=50 Identities=22% Similarity=0.164 Sum_probs=41.9
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhccc
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~le 546 (716)
|+||.. +||+.||+ . ||. ++ + ..++.|+||+--|+.+||++|..||+...
T Consensus 97 GqLT~~G~~q~~~lG~~lR~-r---------Y~~----~~--~---~~~i~vrST~~~RTi~SA~afl~GL~p~~ 152 (438)
T d1ihpa_ 97 DDLTPFGEQELVNSGIKFYQ-R---------YES----LT--R---NIVPFIRSSGSSRVIASGKKFIEGFQSTK 152 (438)
T ss_dssp SSBCHHHHHHHHHHHHHHHH-H---------THH----HH--T---TCCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH-H---------hHH----hc--C---CCceEEEeCCcHHHHHHHHHHHHHhcCCc
Confidence 899987 99999999 6 752 22 2 34789999999999999999999999643
|
| >d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Aspergillus niger [TaxId: 5061]
Probab=97.94 E-value=2.3e-06 Score=89.57 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=42.5
Q ss_pred ccccch------HHHHHHHhccchhhhhhcCCCCCCcchhhhcccccccceEeecCchhHHHHHHHHHHhhhcccC
Q 005046 478 GQFIDF------LIEQFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (716)
Q Consensus 478 GelT~~------~lG~~fR~~~~~~~~~~~~Yp~~~~gLlrlhst~rhdlkIysSdEgRVq~tAaafakg~L~leg 547 (716)
|+||.. +||+.||+ . ||. || .. ..++.|+||+..|+++||++|..||+..+.
T Consensus 103 g~LT~~G~~q~~~LG~~lR~-r---------Y~~----ll--~~--~~~v~~rST~~~RT~~SA~afl~Gl~p~~~ 160 (447)
T d1qfxa_ 103 TSGPYAGLLDAYNHGNDYKA-R---------YGH----LW--NG--ETVVPFFSSGYGRVIETARKFGEGFFGYNY 160 (447)
T ss_dssp CSSTTCHHHHHHHHHHHHHH-H---------HGG----GC--CS--SSCEEEEEESBHHHHHHHHHHHHHHHGGGH
T ss_pred ccccHHHHHHHHHHHHHHHH-h---------hhh----hc--cC--cCceEEEecCchHHHHHHHHHHHHhcCCcc
Confidence 788876 99999999 6 642 33 22 347999999999999999999999997653
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=1.1e-06 Score=86.75 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=68.0
Q ss_pred eeecCcEEEeeccccCcceeEEeccCCCChHHHHHhhhCCCcccccccccccccCcceEEeeccCCC-CceeEEEEECC-
Q 005046 141 NRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVKVYTVGP- 218 (716)
Q Consensus 141 ~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyQEFi~~~-G~DIKvytVG~- 218 (716)
..++.|+|+||.+|. .|-|+. +++....-...+.. ......+...|+||||.-. -..+-+..-|.
T Consensus 60 ~~igfPvvVKP~~~~-----------gs~Gv~-iv~~~~el~~a~~~-a~~~s~~~~vlVEe~I~G~~~~~~~~~~~~~~ 126 (267)
T d1w96a3 60 KRIGFPVMIKASEGG-----------GGKGIR-QVEREEDFIALYHQ-AANEIPGSPIFIMKLAGRARHLEVQLLADQYG 126 (267)
T ss_dssp HHHCSSEEEEETTCC-----------TTTTEE-EECSHHHHHHHHHH-HHHHSTTCCEEEEECCCSCEEEEEEEEECTTS
T ss_pred HhcCCCEEEEeeccc-----------CCeeEE-eecccchhhhhhhh-hhhhcccchhhhhhhccchhhhhhhheeccCc
Confidence 357799999999985 344443 22211111111110 0011236678999999642 23333333322
Q ss_pred ceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee--CCCcEEEeccCc
Q 005046 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC--EGRSYVCDVNGW 289 (716)
Q Consensus 219 ~~vhAe~RKSPv~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~kafgq~-VcGfDLLRs--~g~syV~DVNgw 289 (716)
..++.-.+... ..++.........+..++. +..++|.++++++|.. .+.+|++.+ +|..||+|||-=
T Consensus 127 ~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~lg~~g~~~vd~~~~~~~g~~yviEiNpR 200 (267)
T d1w96a3 127 TNISLFGRDCS----VQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 200 (267)
T ss_dssp CEEEEEEEEEE----EEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECS
T ss_pred ceeeecccccc----cccccccccceeecccCchHHHHHHHHHHHHHHHHhCCccccceeeeeeCCCCcEEEEEeccc
Confidence 12222222110 0111111122233445665 3455688999999976 456899986 356899999953
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.006 Score=51.05 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHhhcCC-ceEEEEeCc-ceeecCCCcccCCcCeeeccccCCCcHHHHHHHHHhcCCcccCCchhhhHhhh
Q 005046 24 GQILDRLQAFG-EFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHD 96 (716)
Q Consensus 24 ~~IL~rL~~~g-~feiiiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~D 96 (716)
+.|++-+.+.| +.+++=..+ .+-++.+--..+.+|++|++-+.++.-..++++|+.+|.+++|++.++.++.|
T Consensus 14 k~L~~a~~~rG~~~~~id~~~~~~~l~~~~~~~~~~D~Vi~R~~s~~~~~~v~~~lE~~Gv~v~Ns~~aI~~c~D 88 (88)
T d1uc8a1 14 RMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALGIPVVNRPEVIEACGD 88 (88)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHTTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHCCCeEEEEehhhcEEEccCCCCccCCCCEEEEeccccchHHHHHHHHHHCCCcEeccHHHHHhhCC
Confidence 44666666665 344444444 44456655556779999999988888899999999999999999999998876
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.16 E-value=0.2 Score=47.66 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCcEEEEecCCCccccccccCccceeeecCeeec-CcEEEeec
Q 005046 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 152 (716)
Q Consensus 99 ~~lqiL~~~gIP~P~t~~~~r~~~~~~~~~~~e~~d~I~v~G~~~~-kPfVeKpv 152 (716)
.+-++|++.|||+|++.++... +++++ .-+.++ +|+|.|+.
T Consensus 8 eaK~lL~~yGIpvp~~~~a~s~------------~ea~~-~a~~ig~~~vVlK~q 49 (246)
T d1eucb2 8 QSKKLMSDNGVKVQRFFVADTA------------NEALE-AAKRLNAKEIVLKAQ 49 (246)
T ss_dssp HHHHHHHTTTCCCCCEEEESSH------------HHHHH-HHHHHTCSSEEEEEC
T ss_pred HHHHHHHHcCCCCCCeeEECCH------------HHHHH-HHHHhCCCeEEEEEe
Confidence 4678999999999999999733 23322 111233 79999985
|