Citrus Sinensis ID: 005059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
Protein Sequence
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKRKRLSRLR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEccccccccccEEcccccccccccEEEccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEccccccccEEEEEccHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccHccEEEEEEcccccccEEEEEEcccHHHHEcccccccccccEEEEEcccccccccccccccccEEEEEEEEEccccccccccccEcccccccccccccccccccccccEEEEEEEHEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHcccccHHHHcccccccEEEEcccccEEEEEEcccccEEEEEEccccccEEccccHHHcccHHHHHEEHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccEEEccccccEEccccccccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDIVESLfdiqvqdppeedfssidltwtkfgtaehhdevalipyarvdsfiigecsnvecptrfhiergrkrsrgslkeykddeylEYRLYWcsfgpenygegggvlpsrkyrlntrnraarpqsmrgctchFVVKrlyarpslALLIYndrrhvnksgfichgpldrdaigpgakkiPYICNEIQQQTMSMIYlgipeesvLEKHIEGIQRycgsdakvnSLASQYVQKLGMIIRRstheldlddqasIRLWVDRNKKSIffyqdssetdpfilGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVtrssakpdVTKWMKSLLDRArsiepgwkisgfliddaaaeidpireifccpLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYsiwdgadpfvnLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMralplasqeASGAIEAYHVKLKtklfddshlgalQRVDWLVHKLTTELHSSywldryadesdsfqnvKDEYIASTSWHRamqipnsavtlgdkEHLFARvssqkdsslthlvwnpgsefafcdcawsmqgnickHVVKVNMICannegyqpsmsFQSLREVLMNLwtkpmddsveLDLSVAWTHNMLDQIKQLVELsssddigavvnnlplkwvskkgrtsvgipsstlalpsssksstvhkknrkrkrlsrlr
Flexible Loop (DISEMBL)
MDIVESLFdiqvqdppeedFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGEcsnvecptrfhiergrkrsrgslkeykddeYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTrnraarpqsmrgctCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRStheldlddqasirLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWvvtrssakpdvtKWMKSLLDRArsiepgwkiSGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVkkctnikiqrEIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNlplkwvskkgrtsvgipsstlalpsssksstvhkknrkrkrlsrlr
Low Complexity Region (SEG)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIpsstlalpsssksstVHkknrkrkrlsrlr
Disordered region (IsUnstruct)
*******************FSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIER*********KEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRL***********MRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARV*****SSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSK**************************************
Disordered Region (DISOPRED)
****ESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRF********************YLEYRLYWCSFGPENY**************************RGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH*LDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADES***QNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNM********************************************************************
Disordered Region (DISEMBL)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSS***************************
Disordered Region (DISPRO)
*DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPS***************SMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSST**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKRKRLSRLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
224093406	744	predicted protein [Populus trichocarpa]	1.0	0.962	0.841	0.0
255555891	719	conserved hypothetical protein [Ricinus	0.988	0.984	0.837	0.0
356567947	719	PREDICTED: uncharacterized protein LOC10	0.986	0.981	0.823	0.0
225431451	720	PREDICTED: uncharacterized protein LOC10	0.956	0.951	0.843	0.0
356554035	765	PREDICTED: uncharacterized protein LOC10	0.969	0.907	0.831	0.0
449461861	718	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.788	0.0
449507487	718	PREDICTED: uncharacterized LOC101204643	1.0	0.997	0.785	0.0
357515651	732	hypothetical protein MTR_8g043760 [Medic	1.0	0.978	0.780	0.0
147776709	706	hypothetical protein VITISV_043960 [Viti	0.937	0.950	0.824	0.0
147794996	706	hypothetical protein VITISV_039453 [Viti	0.937	0.950	0.823	0.0

>gi|224093406|ref|XP_002309914.1| predicted protein [Populus trichocarpa] gi|222852817|gb|EEE90364.1| predicted protein [Populus trichocarpa]

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/727 (84%), Positives = 667/727 (91%), Gaps = 11/727 (1%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDIVES+ ++ VQ+P EEDFS+ DLTWTKFGTAEHHDEVALIPY RVD+FIIGECSN EC
Sbjct: 18  MDIVESVLNLAVQNPAEEDFSAADLTWTKFGTAEHHDEVALIPYDRVDAFIIGECSNPEC 77

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+RG+LK+YK DEYLEY+LYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct: 78  PTRFHIERGRKRARGTLKDYKTDEYLEYKLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 137

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPS AL+IYN+RRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 138 ARPQSMRGCTCHFVVKRLYARPSQALIIYNERRHVNKSGFVCHGPLDRDAIGPGAKKIPY 197

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+ KVNSLASQYV KLGMII+RSTH
Sbjct: 198 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNPKVNSLASQYVHKLGMIIKRSTH 257

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDS E+D FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 258 ELDLDDQASIRMWVERNKKSIFFYQDSLESDAFILGIQTEWQLQQMIRFGHRSLIAADST 317

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRSSAKPDV KWMK+LL RA S+EPGWKISG
Sbjct: 318 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSSAKPDVAKWMKALLGRASSVEPGWKISG 377

Query: 361 FLIDDAAAEIDPIRE-------IFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRL 413
           FLIDDAAAEIDPIR+       IF CP+LFSLWRVRRSWLRNIVKKC NI++QREIFKRL
Sbjct: 378 FLIDDAAAEIDPIRQDIFAIQDIFGCPVLFSLWRVRRSWLRNIVKKCGNIEVQREIFKRL 437

Query: 414 GNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEAS 473
           G I+YSIW G D    LE L  D VDQTAFI+YFKASW+PK+ MWLSTMRALPLASQEAS
Sbjct: 438 GEIVYSIWGGVDTLSALEELTHDLVDQTAFIQYFKASWVPKIEMWLSTMRALPLASQEAS 497

Query: 474 GAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEY 533
           GAIEAYHVKLK KLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EY
Sbjct: 498 GAIEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEY 557

Query: 534 IASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGN 593
           IASTSWHRA+QIPNS+VT+ DK+HLFA+VSSQKD+++T +VWNPGSEFAFCDCAWS+QGN
Sbjct: 558 IASTSWHRALQIPNSSVTVDDKDHLFAKVSSQKDNNVTRIVWNPGSEFAFCDCAWSLQGN 617

Query: 594 ICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIK 653
           +CKHV+KVNMIC N EGYQPSMSF++ +E+L +LW KPMDDSV LDLS+AW H MLDQIK
Sbjct: 618 LCKHVIKVNMICENREGYQPSMSFRAFKELLTSLWKKPMDDSVGLDLSIAWAHQMLDQIK 677

Query: 654 QLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSST----VHKKNRKR 709
            LVEL SS  IG VVNN+PLKWVSKKGRTS+GIPSS LALPSSSKS +      KK++KR
Sbjct: 678 HLVELDSSKTIGTVVNNMPLKWVSKKGRTSIGIPSSVLALPSSSKSGSNNAVARKKSQKR 737

Query: 710 KRLSRLR 716
           KRLSRLR
Sbjct: 738 KRLSRLR 744

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555891|ref|XP_002518981.1| conserved hypothetical protein [Ricinus communis] gi|223541968|gb|EEF43514.1| conserved hypothetical protein [Ricinus communis]

 Score = 1274 bits (3298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/709 (83%), Positives = 653/709 (92%), Gaps = 1/709 (0%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDIVES+FDI VQ+PP+E+FSS DLTWTKFGTA+ HD+VALIPY RVD+FIIGECSNVEC
Sbjct: 1   MDIVESIFDIPVQNPPDEEFSSADLTWTKFGTADRHDDVALIPYDRVDTFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIER RKRSRGSLKEYK+DEYLEY+LYWCSFGPENYGEGG  LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERQRKRSRGSLKEYKNDEYLEYKLYWCSFGPENYGEGGDTLPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
            RPQSMRGCTCHFVVKRLY RPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 PRPQSMRGCTCHFVVKRLYTRPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYVQKLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVQKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQD+SE D FILGIQTEWQLQQMIRFGHRSL+AADST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDTSEADSFILGIQTEWQLQQMIRFGHRSLVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALP+AWV+TRS AKPDV KWMK+LLDRA S+EPGWKISG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPIAWVITRSFAKPDVAKWMKALLDRASSVEPGWKISG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEIDPIR+I+ CP+LFSLWR+RRSWLRNIVKKC NI++QREIFKRLG I+Y I
Sbjct: 361 FLIDDAAAEIDPIRDIYGCPVLFSLWRIRRSWLRNIVKKCNNIEVQREIFKRLGKIVYGI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W+G D    LE L  DFVDQT FI+YF ASW+PK+ MWLS MR LPLASQEASGAIEAYH
Sbjct: 421 WNGGDTLAALEELTTDFVDQTTFIQYFNASWVPKIDMWLSAMRTLPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EY+ASTSWH
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYVASTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA+QIPNSAVTL DK+ LFA+VSSQKDS+LTH+VWNPGSEFAFCDCAWS+QGN+CKHV+K
Sbjct: 541 RALQIPNSAVTLDDKDKLFAKVSSQKDSNLTHIVWNPGSEFAFCDCAWSLQGNLCKHVIK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNM+C N+EG Q SMSFQSL+E+L  LW KPMDDSV LDLS+AWTH ML QIKQLVEL++
Sbjct: 601 VNMLCKNSEG-QSSMSFQSLKEILTGLWRKPMDDSVALDLSMAWTHQMLGQIKQLVELNN 659

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKR 709
           S+ I  VV N+PLKWVS+K RTSVGIPSS   LPSS+KS+  +   R++
Sbjct: 660 SNSISTVVKNMPLKWVSRKARTSVGIPSSIPFLPSSTKSNAKNVVARQK 708

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567947|ref|XP_003552176.1| PREDICTED: uncharacterized protein LOC100776331 [Glycine max]

 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/709 (82%), Positives = 660/709 (93%), Gaps = 3/709 (0%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+  I +QDPPEE+F + DLTWTKFG AEHHDEVALIPY RVD+FIIGEC+NVEC
Sbjct: 1   MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ G+LKEYKDDEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRTIGNLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYA+PSLAL++YN+RRH+NKSGFICHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGIQRYCGSDAKV+SLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+W++RN+KS+FF+QD+SE+DPFILGIQTEWQLQQMIRFGHRS++AADST
Sbjct: 241 ELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FG+KRLKYPL TLLVFDSRQHALPVAWV+TRS  KPDV+KW+K+L+DRARS+EPGWK+SG
Sbjct: 301 FGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID +R+IFCCP+LFSLWRVRRSWLRNIVKKC+NI+IQREIFKRLG I+Y+I
Sbjct: 361 FLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G +  + LE  + DFVDQTAF+EYFK  W+PKL MWLSTMR  PLASQEASGA+EAYH
Sbjct: 421 WGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASQEASGALEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK++YIASTSWH
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA+QIP+ AV+L DK+HLFA+V SQKDSSLTH+VWNPGSEFAFCDC+WSMQGN+CKHVVK
Sbjct: 541 RALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNMIC N +GYQPSMSF+S +EVLM+LW KP+DDS  LDLS+AWTH MLDQI++ VEL++
Sbjct: 601 VNMICENLKGYQPSMSFRSFQEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNN 660

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALP---SSSKSSTVHKKN 706
           S DIG VVNN+PLKWVSKKGRT +G PSS+LALP   S++KS  V+KKN
Sbjct: 661 STDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALPHGSSNTKSVVVYKKN 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431451|ref|XP_002274170.1| PREDICTED: uncharacterized protein LOC100247174 [Vitis vinifera] gi|296088541|emb|CBI37532.3| unnamed protein product [Vitis vinifera]

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/685 (84%), Positives = 640/685 (93%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDI+ES+ DI VQDP EE+FSS DL WTKFG  EHHD+VALIPYARVD+FIIGECSNVEC
Sbjct: 1   MDIIESILDIPVQDPKEEEFSSADLNWTKFGNPEHHDDVALIPYARVDAFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRS+GSLKEYK+DEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSKGSLKEYKNDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           IC+EIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYV KLGMII+RSTH
Sbjct: 181 ICSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDSSE DPFILGIQTEWQLQQMIRFGHRS++A DST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDSSEADPFILGIQTEWQLQQMIRFGHRSIMAVDST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRS AKPDV+KWMK+LLDRAR I+ GWK+SG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKPDVSKWMKALLDRARGIDIGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID IR++FCCP+LFSLWRVRRSWLRNI+KK +N+++QRE+FKRLG I+YSI
Sbjct: 361 FLIDDAAAEIDSIRDVFCCPVLFSLWRVRRSWLRNIIKKSSNVEVQREMFKRLGKIVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G D  V LE   QDFVDQT+FIEYFKA WMPK+ MW+  M+ LPLASQEASGAIEAYH
Sbjct: 421 WSGVDSLVALEEFTQDFVDQTSFIEYFKALWMPKIEMWIDMMKTLPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KL+DDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EYIASTSWH
Sbjct: 481 VKLKVKLYDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIASTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA++IP+++V L DK  LFA+V SQKDS+LTHLVWNPGSEFAFCDC W+MQGN+CKH++K
Sbjct: 541 RALRIPDTSVILEDKNQLFAKVLSQKDSNLTHLVWNPGSEFAFCDCEWAMQGNLCKHIIK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNMIC N++ YQ SMSFQS RE+LMNLW KPMDDSV LD +VAWTH MLDQI++LVEL+S
Sbjct: 601 VNMICKNHQAYQSSMSFQSFREILMNLWRKPMDDSVALDQAVAWTHQMLDQIQKLVELNS 660

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVG 685
           ++DIG+VVNNLPLKWVSKKGRT VG
Sbjct: 661 ANDIGSVVNNLPLKWVSKKGRTFVG 685

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554035|ref|XP_003545355.1| PREDICTED: uncharacterized protein LOC100809744 [Glycine max]

 Score = 1253 bits (3242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/694 (83%), Positives = 647/694 (93%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+  I +QDPPEE+F + DLTWTKFG AEHHDEVALIPY RVD+FIIGEC+NVEC
Sbjct: 1   MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ GSLKEYKDDEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRTIGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYA+PSLAL++YN+RRH+NKSGFICHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGIQRYCGSDAKV+SLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+W++RN+KS+FF+QD+SE+DPFILGIQTEWQLQQMIRFGHRS++AADST
Sbjct: 241 ELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FG+KRLKYPL TLLVFDSRQHALPVAWV+TRS  KPDV+KW+K+L+DRARS+EPGWK+SG
Sbjct: 301 FGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID +R+IFCCP+LFSLWRVRRSWLRNIVKKC+NI+IQREIFKRLG I+Y+I
Sbjct: 361 FLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G +  + LE  + DFVDQTAF+EYFK  W+PKL MWLSTMR  PLAS EASGA+EAYH
Sbjct: 421 WGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASLEASGALEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK++YIASTSWH
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA+QIP+ AV+L DK+HLFA+V SQKDSSLTH+VWNPGSEFAFCDC+WSMQGN+CKHVVK
Sbjct: 541 RALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNMIC N +GYQPSMSF S  EVLM+LW KP+DDS  LDLS+AWTH MLDQI++ VEL++
Sbjct: 601 VNMICENLKGYQPSMSFWSFEEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNN 660

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALP 694
           S DIG VVNN+PLKWVSKKGRT +G PSS+LALP
Sbjct: 661 STDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALP 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461861|ref|XP_004148660.1| PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus]

 Score = 1245 bits (3222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/718 (78%), Positives = 653/718 (90%), Gaps = 2/718 (0%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ D+QVQDPPEE+F S DLTWTKFGT EHHDEVALIPYARVD+FIIGEC+N+EC
Sbjct: 1   MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYARVDAFIIGECTNIEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRSRGSLKE+KDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSRGSLKEFKDDEYLEYRQYWCSFGPENYGEGGSILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVNKSGF+CHGP DR+AIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPFDREAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSM+YLGIPE +++EKH+E +QRYCGS+AK NSLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMLYLGIPEANIVEKHLECLQRYCGSNAKANSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDD+ASI +WV+RNKKSIF +QD+SE + FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 241 ELDLDDRASISMWVERNKKSIFIHQDTSEDNSFILGIQTEWQLQQMIRFGHRSLIAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGI+RLKYPLCTLLVFDSRQHALPVAW++TRS AK DV+KWMK+LLDRA+S+EPGWK+SG
Sbjct: 301 FGIRRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAQSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAA EIDPI +IFCCP+LFSLWR+RRSWL+N+V+KC++I++QREIFKRLG ++YSI
Sbjct: 361 FLIDDAATEIDPIMDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREIFKRLGKLVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           WDG D  V LE   +DFVDQTAF+EYFK  W+PK+ MWLS MRA PLASQEASGAIEAYH
Sbjct: 421 WDGVDASVVLEEFTRDFVDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           +KLK KLFDDSHLGA QRVDWLVHKLTTELHS+YWLDRYADESDSFQNVK+EYI+STSWH
Sbjct: 481 MKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA+QIP+S+VTL D+ HLFA+V SQKD+S++H+VWNPGSEF+FCDC+WSMQGN+CKHV+K
Sbjct: 541 RALQIPDSSVTLDDENHLFAKVLSQKDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNM+C N   Y+PSMSFQS  E+LMN+W  PMDDSV LD+S+AWTH +LD++++LVEL+S
Sbjct: 601 VNMVCENCPSYKPSMSFQSFEEILMNMWKLPMDDSVALDVSMAWTHQILDEVQKLVELNS 660

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKS--STVHKKNRKRKRLSRLR 716
           S+DI +VVN LPLKW S KGRTS   PSST+  PS S +    + KKN+KRKRLS +R
Sbjct: 661 SNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVKKAMQKKNQKRKRLSSIR 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507487|ref|XP_004163046.1| PREDICTED: uncharacterized LOC101204643 [Cucumis sativus]

 Score = 1242 bits (3214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/718 (78%), Positives = 653/718 (90%), Gaps = 2/718 (0%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ D+QVQDPPEE+F S DLTWTKFGT EHHDEVALIPYARVD+FIIGEC+N+EC
Sbjct: 1   MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYARVDAFIIGECTNIEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRSRGSLKE+KDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSRGSLKEFKDDEYLEYRQYWCSFGPENYGEGGSILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVNKSGF+CHGP DR+AIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPFDREAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSM+YLGIPE +++EKH+E +QRYCGS+AK NSLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMLYLGIPEANIVEKHLECLQRYCGSNAKANSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDD+ASI +WV+RNKKSIF +QD+SE + FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 241 ELDLDDRASISMWVERNKKSIFIHQDTSEDNSFILGIQTEWQLQQMIRFGHRSLIAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGI+RLKYPLCTLLVFDSRQHALPVAW++TRS AK DV+KWMK+LLDRA+S+EPGWK+SG
Sbjct: 301 FGIRRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAQSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAA EIDPI +IFCCP+LFSLWR+RRSWL+N+V+KC++I++QREIFKRLG ++YSI
Sbjct: 361 FLIDDAATEIDPIMDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREIFKRLGKLVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           WDG D  V LE   +DFVDQTAF+EYFK  W+PK+ MWLS MRA PLASQEASGAIEAYH
Sbjct: 421 WDGVDASVVLEEFTRDFVDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           +KLK KLFDDSHLGA QRVDWLVHKLTTELHS+YWLDRYADESDSFQNVK+EYI+STSWH
Sbjct: 481 MKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWH 540

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA+QIP+S+VTL ++ HLFA+V SQKD+S++H+VWNPGSEF+FCDC+WSMQGN+CKHV+K
Sbjct: 541 RALQIPDSSVTLDNENHLFAKVLSQKDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIK 600

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNM+C N   Y+PSMSFQS  ++LMN+W  PMDDSV LD+S+AWTH +LD++++LVEL+S
Sbjct: 601 VNMVCENCPSYKPSMSFQSFEKILMNIWKLPMDDSVALDVSMAWTHQILDEVQKLVELNS 660

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKS--STVHKKNRKRKRLSRLR 716
           S+DI +VVN LPLKW S KGRTS   PSST+  PS S +    + KKN+KRKRLS +R
Sbjct: 661 SNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVKKAMQKKNQKRKRLSSIR 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515651|ref|XP_003628114.1| hypothetical protein MTR_8g043760 [Medicago truncatula] gi|355522136|gb|AET02590.1| hypothetical protein MTR_8g043760 [Medicago truncatula]

 Score = 1225 bits (3170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/730 (78%), Positives = 659/730 (90%), Gaps = 14/730 (1%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ +I +QDP EE+FS+ DLTWTKFG+AEH+DEVALIPY RVD+FIIGECSNV C
Sbjct: 3   MAIVESVRNIPLQDPSEEEFSAADLTWTKFGSAEHYDEVALIPYDRVDAFIIGECSNVLC 62

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ G+LKEYKDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 63  PTRFHIERGRKRTIGTLKEYKDDEYLEYRQYWCSFGPENYGEGGEILPSRRYRLNTRNRA 122

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVN SGFICHGPLDRDAIGPGAKKIPY
Sbjct: 123 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNTSGFICHGPLDRDAIGPGAKKIPY 182

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGI+RYCG +A+VNSLASQYV KLGMII+RSTH
Sbjct: 183 ICNEIQQQTMSMIYLGIPEENILEKHIEGIERYCGPNAQVNSLASQYVHKLGMIIKRSTH 242

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RN+KS+FF+QD+SE+DPFILGIQTEWQLQQM+RFGHRS++AADS+
Sbjct: 243 ELDLDDQASIRMWVERNRKSVFFHQDTSESDPFILGIQTEWQLQQMVRFGHRSIVAADSS 302

Query: 301 FGIKRLK-----------YPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRA 349
           FG+KRLK           YPL TLLVFDSRQHALPVAW++TRS AKPDV+KW+K+L+DRA
Sbjct: 303 FGVKRLKVIIFHSRLLSYYPLFTLLVFDSRQHALPVAWIITRSFAKPDVSKWLKALIDRA 362

Query: 350 RSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREI 409
           RS+EPGWK+SGFLIDDAAA+ID + +IF CP+LFSLWR+RRSWLRNIV+KC NI++QREI
Sbjct: 363 RSVEPGWKVSGFLIDDAAADIDLLSDIFDCPVLFSLWRIRRSWLRNIVRKCNNIEVQREI 422

Query: 410 FKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLAS 469
           FKRLG I+YSIW G +  + LE L+ DFVDQT F+EYF+ SW+PK+ MWLSTMR +PLAS
Sbjct: 423 FKRLGTIVYSIWGGTNTSLALEQLMLDFVDQTDFLEYFRVSWLPKIEMWLSTMRNVPLAS 482

Query: 470 QEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNV 529
           QEASGA+EAYHVKLK KLFDDSHLGALQRVDWLVHKLTTELHSSYWLDR+ADESDSFQNV
Sbjct: 483 QEASGALEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRFADESDSFQNV 542

Query: 530 KDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWS 589
           K+ YIASTSWHRA++IP+SAVTL DK  LFA+V+S+KDSSLTH+VWNPGSEF+FCDC+WS
Sbjct: 543 KEGYIASTSWHRALEIPDSAVTLDDKNRLFAKVASKKDSSLTHIVWNPGSEFSFCDCSWS 602

Query: 590 MQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNML 649
           + GN+CKHV+KVNMIC N +G Q SMSF+S  EVLM+LW KP+DDS  LDLS+AWTH ML
Sbjct: 603 LHGNLCKHVIKVNMICENLQGCQSSMSFRSFEEVLMDLWRKPVDDSFALDLSLAWTHQML 662

Query: 650 DQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPS---SSKSSTVHKKN 706
           DQI++LVEL++S DIG VVNN+PLKWVSKK RT++G  SS  A PS   ++KS  V+KKN
Sbjct: 663 DQIQKLVELNNSTDIGTVVNNMPLKWVSKKRRTNIGKRSSISATPSGNRNTKSVVVYKKN 722

Query: 707 RKRKRLSRLR 716
           RKR+RLS+LR
Sbjct: 723 RKRRRLSQLR 732

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776709|emb|CAN76964.1| hypothetical protein VITISV_043960 [Vitis vinifera]

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/685 (82%), Positives = 627/685 (91%), Gaps = 14/685 (2%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDI+ES+ DI VQDP EE+FSS DL WTKFG  EHHD+VALIPYARVD+FIIGECSNVEC
Sbjct: 1   MDIIESILDIPVQDPKEEEFSSADLNWTKFGNPEHHDDVALIPYARVDAFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRS+GSLKEYK+DEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSKGSLKEYKNDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           IC+EIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYV KLGMII+RSTH
Sbjct: 181 ICSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDSSE DPFILGIQTEWQLQQMIRFGHRS++A DST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDSSEADPFILGIQTEWQLQQMIRFGHRSIMAVDST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRS AKPDV+KWMK+LLDRAR I+ GWK+SG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKPDVSKWMKALLDRARGIDIGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
                         ++FCCP+LFSLWRVRRSWLRNI+KK +N+++QRE+FKRLG I+YSI
Sbjct: 361 --------------DVFCCPVLFSLWRVRRSWLRNIIKKSSNVEVQREMFKRLGKIVYSI 406

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G D  V LE   QDFVDQT+FIEYFKA WMPK+ MW+  M+ LPLASQEASGAIEAYH
Sbjct: 407 WSGVDSLVALEEFTQDFVDQTSFIEYFKALWMPKIEMWIDMMKTLPLASQEASGAIEAYH 466

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KL+DDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EYIASTSWH
Sbjct: 467 VKLKVKLYDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIASTSWH 526

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA++IP+++V L DK  LFA+V SQKDS+LTHLVWNPGSEFAFCDC W+MQGN+CKH++K
Sbjct: 527 RALRIPDTSVILEDKNQLFAKVLSQKDSNLTHLVWNPGSEFAFCDCEWAMQGNLCKHIIK 586

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNMIC N++ YQ SMSFQS RE+LMNLW KPMDDSV LD +VAWTH MLDQI++LVEL+S
Sbjct: 587 VNMICKNHQAYQSSMSFQSFREILMNLWRKPMDDSVALDQAVAWTHQMLDQIQKLVELNS 646

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVG 685
           ++DIG+VVNNLPLKWVSKKGRT VG
Sbjct: 647 ANDIGSVVNNLPLKWVSKKGRTFVG 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794996|emb|CAN60858.1| hypothetical protein VITISV_039453 [Vitis vinifera]

 Score = 1221 bits (3159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/685 (82%), Positives = 626/685 (91%), Gaps = 14/685 (2%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDI+ES+ DI VQDP EE+FSS DL WTKFG  EHHD+VALIPYARVD+FIIGECSNVEC
Sbjct: 1   MDIIESILDIPVQDPKEEEFSSADLNWTKFGNPEHHDDVALIPYARVDAFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRS+GSLKEYK+DEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSKGSLKEYKNDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           IC+EIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYV KLGMII+RSTH
Sbjct: 181 ICSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDSSE DPFILGIQTEWQLQQMIRFGHRS++A DST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDSSEADPFILGIQTEWQLQQMIRFGHRSIMAVDST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRS AKPDV+KWMK+LLDRA  I+ GWK+SG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKPDVSKWMKALLDRAHGIDIGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
                         ++FCCP+LFSLWRVRRSWLRNI+KK +N+++QRE+FKRLG I+YSI
Sbjct: 361 --------------DVFCCPVLFSLWRVRRSWLRNIIKKSSNVEVQREMFKRLGKIVYSI 406

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G D  V LE   QDFVDQT+FIEYFKA WMPK+ MW+  M+ LPLASQEASGAIEAYH
Sbjct: 407 WSGVDSLVALEEFTQDFVDQTSFIEYFKALWMPKIEMWIDMMKTLPLASQEASGAIEAYH 466

Query: 481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
           VKLK KL+DDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EYIASTSWH
Sbjct: 467 VKLKVKLYDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIASTSWH 526

Query: 541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
           RA++IP+++V L DK  LFA+V SQKDS+LTHLVWNPGSEFAFCDC W+MQGN+CKH++K
Sbjct: 527 RALRIPDTSVILEDKNQLFAKVLSQKDSNLTHLVWNPGSEFAFCDCEWAMQGNLCKHIIK 586

Query: 601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
           VNMIC N++ YQ SMSFQS RE+LMNLW KPMDDSV LD +VAWTH MLDQI++LVEL+S
Sbjct: 587 VNMICKNHQAYQSSMSFQSFREILMNLWRKPMDDSVALDQAVAWTHQMLDQIQKLVELNS 646

Query: 661 SDDIGAVVNNLPLKWVSKKGRTSVG 685
           ++DIG+VVNNLPLKWVSKKGRT VG
Sbjct: 647 ANDIGSVVNNLPLKWVSKKGRTFVG 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
TAIR|locus:2036541	703	AT1G60560 [Arabidopsis thalian	0.958	0.975	0.791	1.2e-312
TAIR|locus:2129271	778	AT4G13970 [Arabidopsis thalian	0.914	0.841	0.425	5.3e-159
WB|WBGene00013537	915	Y73F8A.33 [Caenorhabditis eleg	0.480	0.375	0.218	5.7e-05

TAIR|locus:2036541 AT1G60560 [Arabidopsis thaliana (taxid:3702)]

 Score = 2999 (1060.8 bits), Expect = 1.2e-312, P = 1.2e-312
 Identities = 543/686 (79%), Positives = 617/686 (89%)

Query:     1 MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
             M+IVESL +I VQ+P  EDFS  DLTWTKFGT+EHHD+VAL+PYARVD FIIGECSN EC
Sbjct:     1 MEIVESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAEC 60

Query:    61 PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
             PTRFHIERGRKRSRGSLKEYK DEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct:    61 PTRFHIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120

Query:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
             ARPQSMRGCTCHFVVKRLYARPSLALLIYN+RRHVNK+GF+CHGPLDRDAIGPGAKKIPY
Sbjct:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNERRHVNKAGFVCHGPLDRDAIGPGAKKIPY 180

Query:   181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
             ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGSDA V+SLASQYV KLGMII+RSTH
Sbjct:   181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTH 240

Query:   241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
             ELDLDDQASI++W +RNKKSIFFYQ+SSETD F+LGIQTEWQLQQ++RFGH SL+AADST
Sbjct:   241 ELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQLVRFGHCSLVAADST 300

Query:   301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
             FGIKRLKYPLCTLLVFDSR HALPVAW+++RS  K DV KWMK LL RA+S+EPG+KI+G
Sbjct:   301 FGIKRLKYPLCTLLVFDSRHHALPVAWIISRSYLKSDVEKWMKILLQRAQSVEPGFKING 360

Query:   361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
             F+IDDAA E DPIR+ FCCP+LFSLWRVRRSWLRN+VKKC +I++QR++FK LG ++YSI
Sbjct:   361 FIIDDAATETDPIRDTFCCPILFSLWRVRRSWLRNVVKKCDSIEVQRDLFKCLGELVYSI 420

Query:   421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
             WDG D    LE L QDFVDQTAF++YF ++W+PK+ MWLSTM++LPLASQEA GAIEAYH
Sbjct:   421 WDGVDTTKALEKLTQDFVDQTAFMQYFTSTWLPKIGMWLSTMKSLPLASQEACGAIEAYH 480

Query:   481 VKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIASTSWH 540
             +KLK KLFDD+HLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVK+EYIASTSW+
Sbjct:   481 IKLKVKLFDDTHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIASTSWY 540

Query:   541 RAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 600
             RAM+IP+SAVTL +   L A+V SQ+DS +T +VWNPGSEFAFCDC WS+QGN+CKH++K
Sbjct:   541 RAMEIPDSAVTLDENNILLAKVQSQRDSDVTRVVWNPGSEFAFCDCTWSLQGNLCKHIIK 600

Query:   601 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 660
             VN +C N EGY  SMS +S +E L N+  KPMDDS+ LDLS+A T  M DQIKQLV LS 
Sbjct:   601 VNTMCENREGYGDSMSLRSFKEKLRNIKMKPMDDSIALDLSMALTLQMFDQIKQLVRLSG 660

Query:   661 SDDIGAVVNNLPLKWVSKKGRTSVGI 686
             ++DI  +VN+LP+KW  KKGRT++GI
Sbjct:   661 TNDISNIVNDLPVKWGCKKGRTTIGI 686

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2129271 AT4G13970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
 Identities = 281/660 (42%), Positives = 430/660 (65%)

Query:     5 ESLFDIQVQDPPEEDFSSIDLTWTKF-GTAEHHDEVALIPYARVDSFIIGECSNVECPTR 63
             + +F + VQ+P   +FSS DL W+K  G  ++ D +ALIPY RVD F+ GECSN +CPT 
Sbjct:     5 DQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTS 64

Query:    64 FHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARP 123
             FH+E  R++++G   + K D  LEY LYWCSFGP++  +GG V PSR   +  +N A RP
Sbjct:    65 FHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNNAGRP 124

Query:   124 QSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICN 183
              S RGC CHF+VKRL A P++AL+IYN+ +HV++ GF CHGP D+ A G  A   PYI  
Sbjct:   125 NSKRGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAMFAPYISE 184

Query:   184 EIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELD 243
             +++ +  S++Y+G+  E+++++H E +++  G   + + L  +YV++L   IRRST+ELD
Sbjct:   185 DLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIRRSTYELD 244

Query:   244 LDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGI 303
              DD  SI +WV+ ++  +FF++  S+TDPF LGIQTEWQLQQMIRFG+  L+A+DS FG 
Sbjct:   245 EDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLASDSRFGT 304

Query:   304 KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLI 363
               LKYP+ +L+VFDS   A+PVAW++    +  D  +WM++L +R  + +P WK++GF++
Sbjct:   305 NTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSWKVAGFIV 364

Query:   364 DDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDG 423
             DD  A+I  IR++F CP+LFS WR+R +W +NI+K+C   K + EI + LG  +  I   
Sbjct:   365 DDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQAVDKISRR 424

Query:   424 ADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKL 483
                    +  ++DFV    F+EYF++ W P++  W S +++LPLASQE   A+E YH +L
Sbjct:   425 QGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAMELYHYQL 484

Query:   484 KTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKDEYIAS-TSWHRA 542
             K +L ++    A QR DWLV KL T++HS +WLD Y+ + +  +  K+E+++  TS+ +A
Sbjct:   485 KCRLLNERDSEAYQRADWLVDKLGTKVHSYFWLDEYSGKDNFARYWKEEWVSGLTSFRKA 544

Query:   543 MQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVN 602
             + IP+S V +     + A+++ + D +  H+VWNPGS+F  C C+W+ +G ICKH++K+ 
Sbjct:   545 LSIPDSDVVISG---MSAKITDECDGNEIHVVWNPGSQFGVCSCSWAEKGYICKHMIKLT 601

Query:   603 MICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSD 662
              +C  N   + S S     + L++L   P  DS+  D +V+   ++  QI  L  L  SD
Sbjct:   602 QLCLGNRAARQSASLLQYYQTLIDLLRCPPHDSLFRDYAVSLAVSVEKQINALGYLQKSD 661

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00013537 Y73F8A.33 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 83/379 (21%), Positives = 156/379 (41%)

Query:   242 LDLDDQASIRLWVDRN--KKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADS 299
             LD +D  S++  VDRN  +  I F+    +    ++   T  Q +   R+G+   I  D 
Sbjct:   305 LDENDFISLQKRVDRNWPEDGIRFFSPPRDDGAVVM---TPDQKELCERYGNDG-ICIDD 360

Query:   300 TFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKIS 359
             T    +    L T+LV +     +PVA++++ +  + DV +  + ++       P +   
Sbjct:   361 THNPSKYNLKLTTMLVVNGHGRGIPVAYMISSTVTQEDVKQLFECIVKEIPDFHPQY--- 417

Query:   360 GFLIDDAAA---EIDPIREIFCCPLLFSLWRVRRSWLRN---IVKKCTNIKIQREIFKRL 413
              F+ D+A A     + + +      L+ +W V+R+   N   ++ KC    ++  +   +
Sbjct:   418 -FMSDEAHAFWNGYNCVLKNHKTQRLWCIWHVQRALFENADKLLPKCEAETVKGTLTSMM 476

Query:   414 GNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMR-ALP----LA 468
             G    + ++     + LE L  D  +   + +YF+ S +    +W    R   P    + 
Sbjct:   477 GEPTKAKYENLLATL-LEHLENDCENGKQYADYFRRSHLDYDKLWAGCFRRGAPFQTSMF 535

Query:   469 SQEASGAIEAYHVKLKTKLFDDSHLGAL-QRVDWLVHKLTTELHSSYWLDRY-ADESDSF 526
             S+    A++  H++L T +  D+ L  L    +W+V KL  +  S   L    A ++ + 
Sbjct:   536 SESWHAALKKEHLQLHTNIRIDALLKVLYDAFEWVVRKLAKQ--SGRCLKTASARKAQNL 593

Query:   527 QNVK------DEYIASTSWHRAMQIPNSAV-TLGDKEHLFARVSSQKDSSLTHLVWNPGS 579
             +N        ++YI S +     +I   A   +   E L    S  KD +         +
Sbjct:   594 RNCAKAKLQAEDYILSQNEKGDFEIEAKASGKVYTVEDLLG-CSCAKDENCHCSCGACWT 652

Query:   580 EFAFCDCAWSMQGNICKHV 598
              F  C C     G  CKHV
Sbjct:   653 RF-LCTCPGQKSGVSCKHV 670

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	716
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	0.003

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 574 VWNPGSEFAFCDC-AWSMQGNICKHVVKV 601
           +       A C C A+ + G  CKH + V
Sbjct: 5   LDLDDLVKASCSCPAFQLYGIPCKHALAV 33

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	716
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.72
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.25
COG3328	379	Transposase and inactivated derivatives [DNA repli	97.92
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	97.41
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	96.5
PF15299	225	ALS2CR8: Amyotrophic lateral sclerosis 2 chromosom	96.28
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	96.22
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.8
PF13610	140	DDE_Tnp_IS240: DDE domain	86.38
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	85.89
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	85.7
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	83.45
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	82.18

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=3.4e-47  Score=445.15  Aligned_cols=484  Identities=14%  Similarity=0.196  Sum_probs=342.1

Q ss_pred             cccccCCCCCCccccccceeEEEEEEeeeCCCcc------CCCCccccccc---cccc---------------------c
Q 005059           67 ERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENY------GEGGGVLPSRK---YRLN---------------------T  116 (716)
Q Consensus        67 ~~~~~~~~g~~~~~~~d~~l~~~~Y~Cs~g~~~y------~~~g~~~psr~---~~~~---------------------~  116 (716)
                      ...-.|-+||.|++.++++-||+.|+..-|+..=      .+.++..-+++   .+.|                     +
T Consensus        69 ~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~  148 (846)
T PLN03097         69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPE  148 (846)
T ss_pred             CCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcc
Confidence            3445799999999999999999988888887641      01000000000   0000                     0


Q ss_pred             CcCCCCCCCccCceeEEEEEEeecCCcEEEEEEecccCCCCCCCccCCCCCcCcCCCCCCcCCCCCHHHHHHHHHHHHcC
Q 005059          117 RNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLG  196 (716)
Q Consensus       117 ~~r~~R~~~k~gC~c~f~Vk~~~~~~~~~v~i~~~~~H~~~~~~~~H~p~~~~a~g~~~~~~~~Is~e~r~~I~~ll~~G  196 (716)
                      ..+.+|..+++||+|++.|++. .++.|.|.-+. .+|+|.       ..+     +.     .++...+          
T Consensus       149 ~~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv-~eHNH~-------L~p-----~~-----~~~~~~r----------  199 (846)
T PLN03097        149 NGTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFV-KEHNHE-------LLP-----AQ-----AVSEQTR----------  199 (846)
T ss_pred             cccccccccCCCCceEEEEEEc-CCCeEEEEEEe-cCCCCC-------CCC-----cc-----ccchhhh----------
Confidence            0112345678999999999984 46778887777 567653       211     01     1222222          


Q ss_pred             CChHHHHHHHHHHhhhhcCCCCcCCCCcHHHHHHHHHHhhhccccCCcchHHHHHHHHHhc--CCeeeEecCCCCCCCeE
Q 005059          197 IPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRN--KKSIFFYQDSSETDPFI  274 (716)
Q Consensus       197 i~~~~Il~~ire~~~k~~g~~~r~~llT~kDV~Ni~~~~~r~~~~l~~nD~~Sv~~wv~~~--~~~vffy~d~~d~~~f~  274 (716)
                          .|+..+...+   ++ .... ..+..|.+|.....++  ..+..+|+..+..++.++  ++|.|||.-..|+++-+
T Consensus       200 ----~~~~~~~~~~---~~-~~~v-~~~~~d~~~~~~~~r~--~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l  268 (846)
T PLN03097        200 ----KMYAAMARQF---AE-YKNV-VGLKNDSKSSFDKGRN--LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRL  268 (846)
T ss_pred             ----hhHHHHHhhh---hc-cccc-cccchhhcchhhHHHh--hhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCe
Confidence                2222111111   11 1111 2345677776555442  255678999999998888  48999998666655555


Q ss_pred             E-EccCHH-HHHHHHHhCCceEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhccc
Q 005059          275 L-GIQTEW-QLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSI  352 (716)
Q Consensus       275 l-~iqt~~-q~~~l~~fg~~~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~  352 (716)
                      . +|+.+. .+..+..||+  ||++|+||.||+|++||..++|+|+||+.+++|++|+.+|+.++|.|+|++|+..|+++
T Consensus       269 ~niFWaD~~sr~~Y~~FGD--vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk  346 (846)
T PLN03097        269 KNLFWVDAKSRHDYGNFSD--VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQ  346 (846)
T ss_pred             eeEEeccHHHHHHHHhcCC--EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCC
Confidence            4 455555 4567888998  99999999999999999999999999999999999999999999999999999999875


Q ss_pred             CCCcceEEEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHH
Q 005059          353 EPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLE  431 (716)
Q Consensus       353 ~p~~~P~~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le  431 (716)
                          .|++|+||.|.|+.+||.+|||++ |.+|.|||+++..+++...+.   ....+...|..+++...++++|+..|.
T Consensus       347 ----~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~---~~~~f~~~f~~cv~~s~t~eEFE~~W~  419 (846)
T PLN03097        347 ----APKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK---QHENFMAKFEKCIYRSWTEEEFGKRWW  419 (846)
T ss_pred             ----CCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh---hhhHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                699999999999999999999996 999999999988887754322   234567778888998888888888898


Q ss_pred             HHHHHhhhhhHHHHHHHhhhhhhHHhHHHhh-hcCCCCCCCCCcHHHHhHHHHhhhhcCCCCc-hhhccHHHHHHHHh-h
Q 005059          432 VLIQDFVDQTAFIEYFKASWMPKLAMWLSTM-RALPLASQEASGAIEAYHVKLKTKLFDDSHL-GALQRVDWLVHKLT-T  508 (716)
Q Consensus       432 ~~~~~f~~~~~F~~Yf~~~Wl~~~~~Wa~~~-R~~~~~~~~TNn~iEs~h~~LK~~ll~~~~~-~~~~RvD~Lv~~L~-~  508 (716)
                      +++++|.-...  +|+...| ..+++||.+| +..+.+++.||++.||+|+.||.++-....+ .|..++|.++.... +
T Consensus       420 ~mi~ky~L~~n--~WL~~LY-~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ek  496 (846)
T PLN03097        420 KILDRFELKED--EWMQSLY-EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEE  496 (846)
T ss_pred             HHHHhhccccc--HHHHHHH-HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Confidence            88888853211  4666677 5579999998 5577899999999999999999866555544 47888999888642 3


Q ss_pred             hhhhchh-------------hh-ccc--ccchhHHhhHHHhhhccchhhhhccCCceeeecCCCcceEEEeeccCCceEE
Q 005059          509 ELHSSYW-------------LD-RYA--DESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTH  572 (716)
Q Consensus       509 ev~s~~~-------------l~-~~~--~~~~~~~~~r~e~~~~~s~~~a~~I~~~~v~i~~~n~~~~~V~Sq~~~~~~~  572 (716)
                      |....|.             +. +.+  -+..+|+.||+|...+.+.......       ++.....|.|........+.
T Consensus       497 E~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~-------~dg~~~~y~V~~~~~~~~~~  569 (846)
T PLN03097        497 EAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMES-------QDETSITFRVQDFEKNQDFT  569 (846)
T ss_pred             HHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeec-------cCCceEEEEEEEecCCCcEE
Confidence            3332221             10 111  1467788999999865431111000       11122247777655555677


Q ss_pred             EEecCCCceeeecccCC-CCCccchhhHHHhhhhcccC
Q 005059          573 LVWNPGSEFAFCDCAWS-MQGNICKHVVKVNMICANNE  609 (716)
Q Consensus       573 vv~n~~~~~~~C~C~~~-~~G~lCkHil~V~~~~~~~~  609 (716)
                      |+||...+...|+|..| +.|+||+|+|+|+.+.....
T Consensus       570 V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~  607 (846)
T PLN03097        570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSA  607 (846)
T ss_pred             EEEecCCCeEEeeccCeecCccchhhHHHHHhhcCccc
Confidence            77999999999999988 99999999999999886544

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.72  E-value=1.4e-17  Score=147.04  Aligned_cols=89  Identities=19%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             ccccccccCCceEE---EEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhhHHH
Q 005059          299 STFGIKRLKYPLCT---LLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIRE  375 (716)
Q Consensus       299 sT~~tN~~~~pL~t---l~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nAI~~  375 (716)
                      +||+||+| .||++   +++.|+.|+++|+||+++++|+.+++.|+|+.+++.+..    . |.+||+|.+.++++||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~----~-p~~ii~D~~~~~~~Ai~~   74 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ----K-PKVIISDFDKALINAIKE   74 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc----C-ceeeeccccHHHHHHHHH
Confidence            69999999 77775   999999999999999999999999999999988877653    4 999999999999999999


Q ss_pred             hcCCC-cccchHHHHHHHH
Q 005059          376 IFCCP-LLFSLWRVRRSWL  393 (716)
Q Consensus       376 VFp~~-~LLC~wHV~qaw~  393 (716)
                      +||+. +++|.||+.|+|+
T Consensus        75 vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   75 VFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             HCCCceEehhHHHHHHhhC
Confidence            99996 9999999999763

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.25  E-value=1.3e-12  Score=144.52  Aligned_cols=244  Identities=16%  Similarity=0.250  Sum_probs=170.9

Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhcCCCCcCCCCcHHHHHHHHHHhhhccccCCcchHHHHHHHHHhcCC
Q 005059          180 YICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKK  259 (716)
Q Consensus       180 ~Is~e~r~~I~~ll~~Gi~~~~Il~~ire~~~k~~g~~~r~~llT~kDV~Ni~~~~~r~~~~l~~nD~~Sv~~wv~~~~~  259 (716)
                      +.+++.-+.|.+|-..|+|..+|-..+    +..+|+.    -+...-|.++...+.           ..+..|-.+-  
T Consensus        98 r~~~~l~~~i~~ly~~G~Str~i~~~l----~~l~g~~----~~S~s~vSri~~~~~-----------~~~~~w~~R~--  156 (381)
T PF00872_consen   98 RREDSLEELIISLYLKGVSTRDIEEAL----EELYGEV----AVSKSTVSRITKQLD-----------EEVEAWRNRP--  156 (381)
T ss_pred             hhhhhhhhhhhhhhccccccccccchh----hhhhccc----ccCchhhhhhhhhhh-----------hhHHHHhhhc--
Confidence            356788889999999999998885433    2224421    145555666554333           2334443321  


Q ss_pred             eeeEecCCCCCCCeEEEccCHHHHHHHHHhCCceEEEEeccccccc-----cCCceEEEEEEcCCCCeEEEEEEEecCCC
Q 005059          260 SIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKR-----LKYPLCTLLVFDSRQHALPVAWVVTRSSA  334 (716)
Q Consensus       260 ~vffy~d~~d~~~f~l~iqt~~q~~~l~~fg~~~vi~~DsT~~tN~-----~~~pL~tl~v~d~~g~g~Pva~~i~~~et  334 (716)
                              +++.+                | .  +|++|+||-.-+     -+-.+++++|+|..|+-.++|+.+...|+
T Consensus       157 --------L~~~~----------------y-~--~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es  209 (381)
T PF00872_consen  157 --------LESEP----------------Y-P--YLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRES  209 (381)
T ss_pred             --------ccccc----------------c-c--ceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCc
Confidence                    11111                1 1  689999986433     34689999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005059          335 KPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRL  413 (716)
Q Consensus       335 ~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L  413 (716)
                      ...+..+|..|.++=  .   -.|..|++|.......||+++||.. ++.|.+|..++..+++.     ...+.++...|
T Consensus       210 ~~~W~~~l~~L~~RG--l---~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~-----~k~~~~v~~~L  279 (381)
T PF00872_consen  210 AASWREFLQDLKERG--L---KDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVP-----KKDRKEVKADL  279 (381)
T ss_pred             cCEeeecchhhhhcc--c---cccceeeccccccccccccccccchhhhhheechhhhhccccc-----cccchhhhhhc
Confidence            998877777665431  1   2488999999999999999999985 99999999985544442     23456677778


Q ss_pred             HHHHhhhcCCCCcHHHHHHHHHHhhh-hhHHHHHHHhhhhhhHHhHHHhhhcCCC---CCCCCCcHHHHhHHHHhhhh
Q 005059          414 GNILYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKASWMPKLAMWLSTMRALPL---ASQEASGAIEAYHVKLKTKL  487 (716)
Q Consensus       414 ~~lv~~~~~~~~~~~~le~~~~~f~~-~~~F~~Yf~~~Wl~~~~~Wa~~~R~~~~---~~~~TNn~iEs~h~~LK~~l  487 (716)
                      +.+.+.. +.++....+++|.+.|.+ .|.++++++..|...   |+ ++. +|-   ..+.|||.+|++|+.||+..
T Consensus       280 k~I~~a~-~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~---~t-f~~-fP~~~~~~i~TTN~iEsln~~irrr~  351 (381)
T PF00872_consen  280 KAIYQAP-DKEEAREALEEFAEKWEKKYPKAAKSLEENWDEL---LT-FLD-FPPEHRRSIRTTNAIESLNKEIRRRT  351 (381)
T ss_pred             ccccccc-ccchhhhhhhhcccccccccchhhhhhhhccccc---cc-eee-ecchhccccchhhhccccccchhhhc
Confidence            7765544 345566778888887766 688999999888533   22 111 222   25689999999999999853

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=97.92  E-value=6.9e-05  Score=82.65  Aligned_cols=176  Identities=14%  Similarity=0.151  Sum_probs=117.2

Q ss_pred             EEEEeccccccc--cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhh
Q 005059          294 LIAADSTFGIKR--LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID  371 (716)
Q Consensus       294 vi~~DsT~~tN~--~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~n  371 (716)
                      .+++|++|---+  -+-.++..+|++..|..-.+++.+...|+ .-...||..|..+--.     ....+++|.-...-+
T Consensus       147 ~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~-----~v~l~v~Dg~~gl~~  220 (379)
T COG3328         147 YVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLS-----DVLLVVVDGLKGLPE  220 (379)
T ss_pred             EEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcccc-----ceeEEecchhhhhHH
Confidence            799999997655  44589999999999999999999999999 5555566665543211     244567799999999


Q ss_pred             hHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHhhh-hhHHHHHHHh
Q 005059          372 PIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKA  449 (716)
Q Consensus       372 AI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le~~~~~f~~-~~~F~~Yf~~  449 (716)
                      ||.++||.. +..|..|..+    |+..+. ..+.+.++...+..+..+. +..+....+.++.+.|.. .+.......+
T Consensus       221 aI~~v~p~a~~Q~C~vH~~R----nll~~v-~~k~~d~i~~~~~~I~~a~-~~e~~~~~~~~~~~~w~~~yP~i~~~~~~  294 (379)
T COG3328         221 AISAVFPQAAVQRCIVHLVR----NLLDKV-PRKDQDAVLSDLRSIYIAP-DAEEALLALLAFSELWGKRYPAILKSWRN  294 (379)
T ss_pred             HHHHhccHhhhhhhhhHHHh----hhhhhh-hhhhhHHHHhhhhhhhccC-CcHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence            999999985 9999999998    443332 2244555666565543333 223334456666665543 3454454444


Q ss_pred             hhhhhHHhHHHhhhcCCCC---CCCCCcHHHHhHHHHhhh
Q 005059          450 SWMPKLAMWLSTMRALPLA---SQEASGAIEAYHVKLKTK  486 (716)
Q Consensus       450 ~Wl~~~~~Wa~~~R~~~~~---~~~TNn~iEs~h~~LK~~  486 (716)
                      .|..   .|.  |-.+|-.   .+.|||.+|+.|+.++..
T Consensus       295 ~~~~---~~~--F~~fp~~~r~~i~ttN~IE~~n~~ir~~  329 (379)
T COG3328         295 ALEE---LLP--FFAFPSEIRKIIYTTNAIESLNKLIRRR  329 (379)
T ss_pred             HHHH---hcc--cccCcHHHHhHhhcchHHHHHHHHHHHH
Confidence            4432   221  1113321   467999999999988864

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=97.41  E-value=0.00029  Score=61.91  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=49.1

Q ss_pred             CCCCccccccceeEEEEEEeeeCCCccCCCCccccccccccccCcCCCCCCCccCceeEEEEEEeecCCcEEEEEEeccc
Q 005059           74 RGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRR  153 (716)
Q Consensus        74 ~g~~~~~~~d~~l~~~~Y~Cs~g~~~y~~~g~~~psr~~~~~~~~r~~R~~~k~gC~c~f~Vk~~~~~~~~~v~i~~~~~  153 (716)
                      .+.+.+.+.++.+.+..|.|+++       |..++..+.  ..+++..+++.++||+|+|.|+... ++.|.+..+. .+
T Consensus        16 ~~~s~~~~~~~~~~~~~~~C~r~-------G~~~~~~~~--~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~~~~-~~   84 (91)
T PF03101_consen   16 KSSSRKSKKNGEIKRVTFVCSRG-------GKYKSKKKN--EEKRRRNRPSKKTGCKARINVKRRK-DGKWRVTSFV-LE   84 (91)
T ss_pred             EeeeEeCCCCceEEEEEEEECCc-------ccccccccc--cccccccccccccCCCEEEEEEEcc-CCEEEEEECc-CC
Confidence            34555667889999999999963       333322211  1223446788899999999999865 7778877776 55


Q ss_pred             CCC
Q 005059          154 HVN  156 (716)
Q Consensus       154 H~~  156 (716)
                      |+|
T Consensus        85 HNH   87 (91)
T PF03101_consen   85 HNH   87 (91)
T ss_pred             cCC
Confidence            754

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=96.50  E-value=0.0016  Score=44.88  Aligned_cols=24  Identities=21%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             eecccCC-CCCccchhhHHHhhhhc
Q 005059          583 FCDCAWS-MQGNICKHVVKVNMICA  606 (716)
Q Consensus       583 ~C~C~~~-~~G~lCkHil~V~~~~~  606 (716)
                      +|+|..+ ..|+||+|+++|+...+
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~   26 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIG   26 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhC
Confidence            6999876 89999999999987654

>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

Probab=96.28  E-value=0.056  Score=55.98  Aligned_cols=59  Identities=2%  Similarity=0.006  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhhh--h-----cCCCCcCCCCcHHHHHHHHHHhh
Q 005059          178 IPYICNEIQQQTMSMIYLGIPE-ESVLEKHIEGIQR--Y-----CGSDAKVNSLASQYVQKLGMIIR  236 (716)
Q Consensus       178 ~~~Is~e~r~~I~~ll~~Gi~~-~~Il~~ire~~~k--~-----~g~~~r~~llT~kDV~Ni~~~~~  236 (716)
                      ...|.++..+.|.+|+..|++. .+|.+.++..+..  +     ....+|...+|.+||+|......
T Consensus       155 ~q~~~~~v~~ki~eLv~~gv~~v~e~k~~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~  221 (225)
T PF15299_consen  155 KQPLDPRVVEKIHELVAQGVTSVPEMKRHLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAK  221 (225)
T ss_pred             cccCCHHHHHHHHHHHHcccccHHHHHHHHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHH
Confidence            4568999999999999999887 4554444333321  1     22346778899999999876554

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.22  E-value=0.0044  Score=46.09  Aligned_cols=27  Identities=37%  Similarity=0.753  Sum_probs=22.8

Q ss_pred             CCceeeecccCC-CCCccchhhHHHhhh
Q 005059          578 GSEFAFCDCAWS-MQGNICKHVVKVNMI  604 (716)
Q Consensus       578 ~~~~~~C~C~~~-~~G~lCkHil~V~~~  604 (716)
                      +.....|+|+.+ ..|.+|+|+++|+..
T Consensus        11 ~~~~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   11 SIEQASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             cccccEeeCCCccccCCcchhHHHHHHh
Confidence            456789999987 699999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.80  E-value=0.055  Score=56.27  Aligned_cols=91  Identities=15%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             EEEeccccccccCCceEEEEEEcCC-CCeEEEEEEEecCCChhhHHHHHHHHH-HHhcccCCCcceEEEEEcCchhhhhh
Q 005059          295 IAADSTFGIKRLKYPLCTLLVFDSR-QHALPVAWVVTRSSAKPDVTKWMKSLL-DRARSIEPGWKISGFLIDDAAAEIDP  372 (716)
Q Consensus       295 i~~DsT~~tN~~~~pL~tl~v~d~~-g~g~Pva~~i~~~et~e~~~~~L~~l~-~~~~~~~p~~~P~~fmtD~d~A~~nA  372 (716)
                      |+||=+.....+..  |..++.|.. ..+-++  .++.+-+.+++..||..++ ...     .-.+++|.+|...+...|
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~il--~i~~~r~~~~l~~~~~~~~~~~~-----~~~v~~V~~Dm~~~y~~~   71 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRIL--DILPGRDKETLKDFFRSLYPEEE-----RKNVKVVSMDMSPPYRSA   71 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceEE--EEcCCccHHHHHHHHHHhCcccc-----ccceEEEEcCCCcccccc
Confidence            35666655554443  555566652 223333  3778888898888876552 111     126889999999999999


Q ss_pred             HHHhcCCC-cccchHHHHHHHHH
Q 005059          373 IREIFCCP-LLFSLWRVRRSWLR  394 (716)
Q Consensus       373 I~~VFp~~-~LLC~wHV~qaw~k  394 (716)
                      +++.||+. +.+-.|||.|...+
T Consensus        72 ~~~~~P~A~iv~DrFHvvk~~~~   94 (249)
T PF01610_consen   72 IREYFPNAQIVADRFHVVKLANR   94 (249)
T ss_pred             ccccccccccccccchhhhhhhh
Confidence            99999996 89999999986544

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=86.38  E-value=0.24  Score=47.29  Aligned_cols=78  Identities=17%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             EEEEecccc-ccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhh
Q 005059          294 LIAADSTFG-IKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP  372 (716)
Q Consensus       294 vi~~DsT~~-tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nA  372 (716)
                      .+++|-||= .+.-  --|..-++|..|.  .+.+.++..-+...-..||..++....     -.|..|+||+..+...|
T Consensus         3 ~w~~DEt~iki~G~--~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~-----~~p~~ivtDk~~aY~~A   73 (140)
T PF13610_consen    3 SWHVDETYIKIKGK--WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR-----GEPRVIVTDKLPAYPAA   73 (140)
T ss_pred             EEEEeeEEEEECCE--EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec-----cccceeecccCCccchh
Confidence            689999994 3433  3445567898888  688888888888876667665554432     26999999999999999


Q ss_pred             HHHhcCCC
Q 005059          373 IREIFCCP  380 (716)
Q Consensus       373 I~~VFp~~  380 (716)
                      +++.++..
T Consensus        74 ~~~l~~~~   81 (140)
T PF13610_consen   74 IKELNPEG   81 (140)
T ss_pred             hhhccccc
Confidence            99999863

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=85.89  E-value=4.2  Score=36.59  Aligned_cols=75  Identities=11%  Similarity=0.002  Sum_probs=53.3

Q ss_pred             eEEEEeccccc-cccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhh
Q 005059          293 SLIAADSTFGI-KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID  371 (716)
Q Consensus       293 ~vi~~DsT~~t-N~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~n  371 (716)
                      ..+++|.++-. ...+-..+.++++|.+ .++.+++.+.+.++.+.+..+|...+...+.    ..|+.+.+|...+..+
T Consensus         7 ~~~~~D~~~~~~~~~~~~~~~~~~iD~~-S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    7 ERWQIDFTPMPIPDKGGRVYLLVFIDDY-SRFIYAFPVSSKETAEAALRALKRAIEKRGG----RPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TEEEEEEEEETGGCTT-CEEEEEEEETT-TTEEEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHHS
T ss_pred             CEEEEeeEEEecCCCCccEEEEEEEECC-CCcEEEEEeeccccccccccccccccccccc----ccceeccccccccccc
Confidence            37999999433 2233378888999986 5566788888888888887777766665542    1299999999988775


Q ss_pred             h
Q 005059          372 P  372 (716)
Q Consensus       372 A  372 (716)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            4

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=85.70  E-value=2.4  Score=38.86  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=25.5

Q ss_pred             CCCCCccCceeEEEEEEeec--CCcEEEEEEecccCCC
Q 005059          121 ARPQSMRGCTCHFVVKRLYA--RPSLALLIYNDRRHVN  156 (716)
Q Consensus       121 ~R~~~k~gC~c~f~Vk~~~~--~~~~~v~i~~~~~H~~  156 (716)
                      .+++.++.|.|+|+|+..+.  ...|.+++.+ +.|+|
T Consensus        73 ~k~t~srk~~CPFriRA~yS~k~k~W~lvvvn-n~HnH  109 (111)
T PF08731_consen   73 KKRTKSRKNTCPFRIRANYSKKNKKWTLVVVN-NEHNH  109 (111)
T ss_pred             CCcccccccCCCeEEEEEEEecCCeEEEEEec-CCcCC
Confidence            34556788999999998754  5677777777 55754

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=83.45  E-value=1.5  Score=46.40  Aligned_cols=81  Identities=14%  Similarity=0.102  Sum_probs=48.3

Q ss_pred             EEEEeccccc----cc-cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchh
Q 005059          294 LIAADSTFGI----KR-LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAA  368 (716)
Q Consensus       294 vi~~DsT~~t----N~-~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A  368 (716)
                      ++++|-|.-.    .+ -+.=+.++..  ..    .+.|.+..+-..+.+..+|..           + ..++++|.-.+
T Consensus        69 ~~~~DET~~~vl~~~~g~~~~~Wv~~~--~~----~v~f~~~~sR~~~~~~~~L~~-----------~-~GilvsD~y~~  130 (271)
T PF03050_consen   69 VVHADETGWRVLDKGKGKKGYLWVFVS--PE----VVLFFYAPSRSSKVIKEFLGD-----------F-SGILVSDGYSA  130 (271)
T ss_pred             eeccCCceEEEeccccccceEEEeeec--cc----eeeeeecccccccchhhhhcc-----------c-ceeeecccccc
Confidence            7777777644    22 2222333322  22    566777776666665555422           1 24788888876


Q ss_pred             hhhhHHHhcCCCcccchHHHHHHHHHHH
Q 005059          369 EIDPIREIFCCPLLFSLWRVRRSWLRNI  396 (716)
Q Consensus       369 ~~nAI~~VFp~~~LLC~wHV~qaw~k~l  396 (716)
                      ... +.   +..+.+|+-|+.+.+.+-.
T Consensus       131 Y~~-~~---~~~hq~C~AH~~R~~~~~~  154 (271)
T PF03050_consen  131 YNK-LA---GITHQLCWAHLRRDFQDAA  154 (271)
T ss_pred             ccc-cc---ccccccccccccccccccc
Confidence            555 22   5579999999998665433

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=82.18  E-value=1e+02  Score=35.54  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             EEEEcCchhhhhhHHHhcCCC-cccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHhh
Q 005059          360 GFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFV  438 (716)
Q Consensus       360 ~fmtD~d~A~~nAI~~VFp~~-~LLC~wHV~qaw~k~l~~~~~~~e~~~ev~~~L~~lv~~~~~~~~~~~~le~~~~~f~  438 (716)
                      ++..|.+.=..++. +.||.. +.|..||+.|+..+.+..   ..+.+..+++.|..    - +...++..++.+...-.
T Consensus       261 iingDGa~WIk~~~-~~~~~~~~~LD~FHl~k~i~~~~~~---~~~~~~~~~~al~~----~-d~~~l~~~L~~~~~~~~  331 (470)
T PF06782_consen  261 IINGDGASWIKEGA-EFFPKAEYFLDRFHLNKKIKQALSH---DPELKEKIRKALKK----G-DKKKLETVLDTAESCAK  331 (470)
T ss_pred             EEeCCCcHHHHHHH-HhhcCceEEecHHHHHHHHHHHhhh---ChHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhhh
Confidence            34557776554444 488875 899999999988876632   23444445544432    1 11222333443332221


Q ss_pred             h------hhHHHHHHHhhhhhhHHhHHHhhhcCCCCCCCCCcHHHHhHHHHhhhhcCC
Q 005059          439 D------QTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDD  490 (716)
Q Consensus       439 ~------~~~F~~Yf~~~Wl~~~~~Wa~~~R~~~~~~~~TNn~iEs~h~~LK~~ll~~  490 (716)
                      +      -.++..|+.++|-. +    ..|+..  .+.......|+.|+.|.+.+-.+
T Consensus       332 ~~~~~~~i~~~~~Yl~~n~~~-i----~~y~~~--~~~~g~g~ee~~~~~~s~RmK~r  382 (470)
T PF06782_consen  332 DEEERKKIRKLRKYLLNNWDG-I----KPYRER--EGLRGIGAEESVSHVLSYRMKSR  382 (470)
T ss_pred             chHHHHHHHHHHHHHHHCHHH-h----hhhhhc--cCCCccchhhhhhhHHHHHhcCC
Confidence            1      24688999999953 2    234320  12334455899999998776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	716
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 9e-12
 Identities = 107/691 (15%), Positives = 207/691 (29%), Gaps = 205/691 (29%)

Query: 30  FGTAEHHDEVALIPYARVDSFIIG-ECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEY 88
           F T EH  +   I     D+F+   +C +V+   +  +    K     +   KD      
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTL 65

Query: 89  RLYW--CSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYAR---PS 143
           RL+W   S   E   +    +    Y+                   F++  +      PS
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK-------------------FLMSPIKTEQRQPS 106

Query: 144 LALLIYNDRRHV--NKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEES 201
           +   +Y ++R    N +       + R       +       +++Q  + +     P ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSR------LQPY----LKLRQALLELR----PAKN 152

Query: 202 VLEKHIEGIQRYCGSDAKVNSLASQYVQKLGM--------IIRRSTHELDLDDQASIRLW 253
           VL   I+G+    G       +   Y  +  M        +   ++ E  L+    +   
Sbjct: 153 VL---IDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 254 VDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTL 313
           +D N  S     D S        ++      ++ R              +K   Y  C L
Sbjct: 209 IDPNWTS---RSDHSSNIK----LRIHSIQAELRRL-------------LKSKPYENC-L 247

Query: 314 LVFDSRQHALPVAW----------VVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLI 363
           LV  + Q+    AW          + TR      VT ++ +      S++          
Sbjct: 248 LVLLNVQN--AKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTHISLDHHSM--TLTP 300

Query: 364 DDA------AAEID----PIREIFCCPLLFSL--------------WR-VRRSWLRNIVK 398
           D+         +      P   +   P   S+              W+ V    L  I++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 399 KCTNI---KIQREIFKRLG------NI----LYSIWDGADPFVNLEVLIQDFVDQTAFIE 445
              N+      R++F RL       +I    L  IW        + V++      +   +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEK 419

Query: 446 YFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHK 505
             K                      E++ +I + +++LK KL ++  L          H+
Sbjct: 420 QPK----------------------ESTISIPSIYLELKVKLENEYAL----------HR 447

Query: 506 LTTELHSSYWLDRYADESDSFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQ 565
               +   Y + +  D  D      D+Y      H           +G   HL      +
Sbjct: 448 ---SIVDHYNIPKTFDSDDLIPPYLDQYFY---SH-----------IGH--HLKNIEHPE 488

Query: 566 KDSSLTHLVWNPGSEFAF-------CDCAWSMQGNICKHVVKVNM----ICANNEGYQPS 614
           + +    +  +    F F          AW+  G+I   + ++      IC N+  Y   
Sbjct: 489 RMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY--E 542

Query: 615 MSFQSLREVLM----NLWTKPMDDSVELDLS 641
               ++ + L     NL      D + + L 
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 91/563 (16%), Positives = 165/563 (29%), Gaps = 183/563 (32%)

Query: 206 HIE---GIQRYCGSD-------AKVNSLASQYVQK-LGMIIRRSTHELDL------DDQA 248
           H++   G  +Y   D       A V++   + VQ     I+  S  E+D           
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSG 63

Query: 249 SIRL-WVDRNK-KSIF--FYQDSSETD-PFILG-IQTEWQLQQMIRFGHRSLIAADSTFG 302
           ++RL W   +K + +   F ++    +  F++  I+TE +   M+   +      D  + 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYN 121

Query: 303 IKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKIS--- 359
             +         VF            V+R      + + +  L        P   +    
Sbjct: 122 DNQ---------VFAKYN--------VSRLQPYLKLRQALLEL-------RPAKNVLIDG 157

Query: 360 --GF----LIDDAAAEIDPIR----EIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREI 409
             G     +  D             +IF              WL   +K C        +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF--------------WLN--LKNC---NSPETV 198

Query: 410 FKRLGNILYSI----WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPK-LAMWLSTMRA 464
            + L  +LY I       +D   N+++ I     Q       K+      L         
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCL--------- 247

Query: 465 LPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESD 524
           L L + + + A  A+++  K                 L+   TT         R+     
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKI----------------LL---TT---------RFK---- 275

Query: 525 SFQNVKDEYIASTSWHRAMQIPNSAVTLGDKEHLFARVSSQKDSSLTHLVWNPGSEFAFC 584
               V D   A+T+ H ++   +  +T  + + L  +    +   L   V    +     
Sbjct: 276 ---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLS 331

Query: 585 DCAWSMQGNIC-----KHVV--KVNMI---CANN-EGYQPSMSFQSL----------REV 623
             A S++  +      KHV   K+  I     N  E  +    F  L            +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 624 LMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTS 683
           L  +W   +   V + +             +L + S           L  K   K+   S
Sbjct: 392 LSLIWFDVIKSDVMVVV------------NKLHKYS-----------LVEKQ-PKESTIS 427

Query: 684 VGIPSSTLAL-PSSSKSSTVHKK 705
             IPS  L L         +H+ 
Sbjct: 428 --IPSIYLELKVKLENEYALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	716
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	83.68

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=83.68  E-value=1.4  Score=38.59  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             eEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhcccCCCcceEEEEEcCchhhhhh
Q 005059          293 SLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP  372 (716)
Q Consensus       293 ~vi~~DsT~~tN~~~~pL~tl~v~d~~g~g~Pva~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~nA  372 (716)
                      |++.+|.||--|+     +.++++|.+ .++..++.+ .+++.+.+..+|..+...       ..|+.|.||....+.++
T Consensus         4 g~W~~D~~~~~~k-----~ilv~vD~~-Sr~~~~~~~-~~~~~~~v~~~l~~~~~~-------~~p~~I~sDnG~eF~s~   69 (154)
T d1exqa_           4 GIWQLDCTHLEGK-----VILVAVHVA-SGYIEAEVI-PAETGQETAYFLLKLAGR-------WPVKTIHTDNGSNFTGA   69 (154)
T ss_dssp             GEEEEEEEEETTE-----EEEEEEETT-TTEEEEEEE-SSSSHHHHHHHHHHHHHH-------SCCCEEECCCCGGGTSH
T ss_pred             CceeeEEEEECCE-----EEEEEEECc-CCcEEEEEe-cCcchHHHHhhhhhheec-------cCCCEEEEcCCccccch
Confidence            3899999987665     466778887 456677665 456777777777655432       14889999999888776


Q ss_pred             HHH
Q 005059          373 IRE  375 (716)
Q Consensus       373 I~~  375 (716)
                      .-.
T Consensus        70 ~~~   72 (154)
T d1exqa_          70 TVR   72 (154)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            543